HHsearch alignment for GI: 254780212 and conserved domain: cd02953
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.95 E-value=1.8e-05 Score=55.06 Aligned_cols=92 Identities=15% Similarity=0.189 Sum_probs=54.6
Q ss_pred HCCCEEEEEEEECCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 69985999965113676631126100---000000012333322234443211112222100000000123445899859
Q gi|254780212|r 28 LGGSKIVLYFYPKDDTSGCTAEAINF---SSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYD 104 (157)
Q Consensus 28 l~gk~vvl~f~~~~~tp~C~~e~~~l---~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~g 104 (157)
T Consensus 9 ~~gKpVlvdf~-A~WC~~Ck~m~~~~~~~~~v~~~~~-~~~v~vkvD~t~~-----------------~~~~~~l~~~~~ 69 (104)
T cd02953 9 AQGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALK-KDVVLLRADWTKN-----------------DPEITALLKRFG 69 (104)
T ss_pred HCCCCEEEEEE-CCCCHHHHHHHHHCCCCHHHHHHHH-CCCCEEECCCCCC-----------------CHHHHHHHHHCC
T ss_conf 82991999998-6758888851142048899999972-4773576367789-----------------989999999839
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCEEE-EEECCCCCCCCHHHHHHHHH
Q ss_conf 86666557665444210799988999799-99768885789999999999
Q gi|254780212|r 105 VWKEKSMFGKKYMGVVRTTFLIDEKGIIA-QIWKPVTLKNHAQSVLKMVK 153 (157)
Q Consensus 105 v~~~~~~~~~~~~~~~r~tfiid~~G~I~-~~~~~~~~~~~~~eil~~i~ 153 (157)
T Consensus 70 v~g------------~Pt~~f~~~~g~~~~~~l~G~~---~~~~fl~~Le 104 (104)
T cd02953 70 VFG------------PPTYLFYGPGGEPEPLRLPGFL---TADEFLEALE 104 (104)
T ss_pred CCC------------CCEEEEECCCCCCCCCEEECCC---CHHHHHHHHC
T ss_conf 955------------6779998799986762612304---8999999759