HHsearch alignment for GI: 254780212 and conserved domain: cd02966

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.89  E-value=1.7e-23  Score=165.68  Aligned_cols=114  Identities=29%  Similarity=0.475  Sum_probs=105.3

Q ss_pred             CEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf             30788699978828986998599996511367663112610000000001233332223444--3211112222100000
Q gi|254780212|r   12 HFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPD--SIASHKKFHQKHNLSI   89 (157)
Q Consensus        12 ~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d--~~~~~~~~~~~~~~~f   89 (157)
T Consensus         1 df~l~d~~G~~~~l~~~~gk~~vl~f~-a~wC~~C~~~~~~l~~~~~~~~~~~v~vi~i~~~~~~~~~~~~~~~~~~~~~   79 (116)
T cd02966           1 DFSLPDLDGKPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITF   79 (116)
T ss_pred             CCCEECCCCCEEEHHHHCCCEEEEEEE-CCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCE
T ss_conf             921587992998599979995999999-2789975453642023301344564138999788788899999887439833


Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECC
Q ss_conf             0001234458998598666655766544421079998899979999768
Q gi|254780212|r   90 TLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKP  138 (157)
Q Consensus        90 pil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~  138 (157)
T Consensus        80 p~~~D~~~~~~~~~~v~------------~~P~~~iid~~G~i~~~~~G  116 (116)
T cd02966          80 PVLLDPDGELAKAYGVR------------GLPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             EEEECCCCHHHHHCCCC------------CCCEEEEECCCCEEEEEEEC
T ss_conf             89986985289984998------------04579999999999999979