HHsearch alignment for GI: 254780212 and conserved domain: cd02979

>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=93.29  E-value=0.66  Score=27.04  Aligned_cols=128  Identities=14%  Similarity=0.203  Sum_probs=67.3

Q ss_pred             CCCCCCEEEEC-CCCCEEEHHHH---CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC----------------CCCC
Q ss_conf             86537307886-99978828986---9985999965113676631126100000000012----------------3333
Q gi|254780212|r    7 GDKAPHFVLPS-NDEQEISLLAL---GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE----------------ESTI   66 (157)
Q Consensus         7 G~~aP~f~l~~-~~g~~~~l~~l---~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~----------------~gv~   66 (157)
T Consensus         1 G~R~~~~~V~r~aD~~p~~l~~~~~sdGrfri~vFa-gd~~~--~~~~~~l~~l~~~l~~~~s~~~~~~~~~~~~~~~~~   77 (167)
T cd02979           1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFA-GDIAP--AQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSVFD   77 (167)
T ss_pred             CCCCCCCEEEEECCCCEEECCCCCCCCCCEEEEEEE-CCCCC--CCHHHHHHHHHHHHHCCCCHHHEECCCCCCCCCCEE
T ss_conf             963788358886479882510313479858999995-78876--331779999999870866425310677799786379


Q ss_pred             CCCCCCCC---------CCCCCCCCCCCCCCC-CCHHHH------HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf             22234443---------211112222100000-000123------44589985986666557665444210799988999
Q gi|254780212|r   67 LIGISPDS---------IASHKKFHQKHNLSI-TLLADE------SKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKG  130 (157)
Q Consensus        67 vv~is~d~---------~~~~~~~~~~~~~~f-pil~D~------~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G  130 (157)
T Consensus        78 ~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~d~~kv~~dd~~~~~~~~~ay~~~GId~~~G-----------avVVVRPD~  146 (167)
T cd02979          78 VVTIHAAPRREIELLDLPAVLRPFGEKKGWDYEKIYADDDSYHEGHGDAYEKYGIDPERG-----------AVVVVRPDQ  146 (167)
T ss_pred             EEEEECCCCCCCCHHHCCHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCE-----------EEEEECCCC
T ss_conf             999965787633265686744676512574320188146545566432798749786643-----------899988997


Q ss_pred             EEEEEECCCCCCCCHHHHHHHH
Q ss_conf             7999976888578999999999
Q gi|254780212|r  131 IIAQIWKPVTLKNHAQSVLKMV  152 (157)
Q Consensus       131 ~I~~~~~~~~~~~~~~eil~~i  152 (157)
T Consensus       147 yVg~v~~l----dd~~~l~~yF  164 (167)
T cd02979         147 YVALVGPL----DDVEALEAYF  164 (167)
T ss_pred             CEEEEECC----CHHHHHHHHH
T ss_conf             27998760----2088999886