HHsearch alignment for GI: 254780212 and conserved domain: cd03003
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=94.88 E-value=0.0099 Score=38.24 Aligned_cols=83 Identities=14% Similarity=0.252 Sum_probs=48.0
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
T Consensus 17 ~~~~~~V~Fy-ApWC~hCk~l~P~~~~~a~~~~~-~v~ia~vdc~---------------------~~~~lc~~~~V~~- 72 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCG---------------------DDRMLCRSQGVNS- 72 (101)
T ss_pred CCCEEEEEEE-CCCCHHHHHHCHHHHHHHHHHCC-CEEEEEEECC---------------------CCHHHHCCCEEEE-
T ss_conf 6982999996-88588888646899999998369-6699998525---------------------6933401345676-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHH
Q ss_conf 655766544421079998899979999768885789999999
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLK 150 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~ 150 (157)
T Consensus 73 -----------yPTl~~f-~~G~~~~~Y~G~---Rt~~~l~~ 99 (101)
T cd03003 73 -----------YPSLYVF-PSGMNPEKYYGD---RSKESLVK 99 (101)
T ss_pred -----------CCEEEEE-CCCCEEEEEECC---CCHHHHHH
T ss_conf -----------2489998-099701455088---99999995