Query gi|254780212|ref|YP_003064625.1| bacterioferritin comigratory protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 157
No_of_seqs 117 out of 6540
Neff 8.3
Searched_HMMs 39220
Date Mon May 23 19:05:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780212.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1225 Bcp Peroxiredoxin [Pos 100.0 1.3E-44 0 295.5 10.0 157 1-157 1-157 (157)
2 PRK09437 bcp thioredoxin-depen 100.0 3.4E-44 0 292.8 11.4 155 1-155 1-155 (156)
3 cd03015 PRX_Typ2cys Peroxiredo 100.0 7E-40 1.8E-44 266.3 10.1 145 6-156 1-157 (173)
4 TIGR03137 AhpC peroxiredoxin. 100.0 1.1E-39 2.9E-44 265.0 10.2 148 2-156 1-156 (187)
5 PTZ00253 tryparedoxin peroxida 100.0 6.5E-39 1.7E-43 260.3 9.8 148 3-156 5-164 (199)
6 PRK13190 putative peroxiredoxi 100.0 1.8E-38 4.5E-43 257.7 9.6 147 3-156 1-154 (202)
7 PRK13599 putative peroxiredoxi 100.0 2.7E-38 7E-43 256.5 10.4 148 4-156 2-156 (215)
8 cd03016 PRX_1cys Peroxiredoxin 100.0 2.9E-38 7.5E-43 256.3 10.2 146 6-156 1-154 (203)
9 PRK10382 alkyl hydroperoxide r 100.0 6.9E-38 1.8E-42 254.1 9.4 146 5-156 3-156 (187)
10 PTZ00137 2-Cys peroxiredoxin; 100.0 1E-37 2.6E-42 253.1 9.4 148 2-156 1-160 (194)
11 PRK13189 peroxiredoxin; Provis 100.0 3.8E-37 9.8E-42 249.5 10.4 147 5-156 3-156 (215)
12 PRK13191 putative peroxiredoxi 100.0 5.8E-37 1.5E-41 248.4 9.7 148 4-156 8-162 (230)
13 cd03018 PRX_AhpE_like Peroxire 100.0 1.1E-36 2.9E-41 246.6 9.5 145 4-154 1-149 (149)
14 COG0450 AhpC Peroxiredoxin [Po 100.0 1.7E-36 4.3E-41 245.5 9.7 149 2-156 1-161 (194)
15 cd03017 PRX_BCP Peroxiredoxin 100.0 1E-36 2.7E-41 246.8 8.3 140 8-150 1-140 (140)
16 cd03014 PRX_Atyp2cys Peroxired 100.0 1.4E-33 3.7E-38 227.5 8.9 139 5-151 1-143 (143)
17 PRK00522 tpx thiol peroxidase; 100.0 2.6E-33 6.6E-38 226.0 9.8 147 3-154 18-168 (168)
18 cd02971 PRX_family Peroxiredox 100.0 2.8E-32 7.2E-37 219.6 9.2 138 9-149 1-140 (140)
19 PRK03147 thiol-disulfide oxido 100.0 2.8E-31 7.1E-36 213.5 8.6 139 2-153 34-173 (176)
20 pfam08534 Redoxin Redoxin. Thi 100.0 1.2E-30 3.2E-35 209.5 8.7 137 6-149 1-142 (142)
21 pfam00578 AhpC-TSA AhpC/TSA fa 100.0 1.3E-30 3.3E-35 209.4 7.1 124 6-135 1-124 (124)
22 KOG0854 consensus 100.0 5.2E-29 1.3E-33 199.5 8.2 156 1-156 3-168 (224)
23 cd02970 PRX_like2 Peroxiredoxi 99.9 7.4E-28 1.9E-32 192.5 7.7 130 9-138 1-148 (149)
24 cd02969 PRX_like1 Peroxiredoxi 99.9 1.3E-27 3.2E-32 191.1 8.4 136 7-155 1-151 (171)
25 KOG0852 consensus 99.9 3.7E-27 9.4E-32 188.2 9.0 150 1-156 1-161 (196)
26 KOG0855 consensus 99.9 8.3E-27 2.1E-31 186.0 8.6 147 3-154 62-210 (211)
27 cd03010 TlpA_like_DsbE TlpA-li 99.9 1.6E-24 4.2E-29 172.0 4.7 117 8-140 1-121 (127)
28 cd02966 TlpA_like_family TlpA- 99.9 1.7E-23 4.4E-28 165.7 8.2 114 12-138 1-116 (116)
29 cd03012 TlpA_like_DipZ_like Tl 99.9 1.5E-23 3.9E-28 166.0 4.7 116 11-139 1-125 (126)
30 cd03011 TlpA_like_ScsD_MtbDsbE 99.9 6.9E-23 1.8E-27 162.0 7.3 112 11-141 1-114 (123)
31 cd03013 PRX5_like Peroxiredoxi 99.9 1.1E-21 2.7E-26 154.7 8.2 143 6-150 1-155 (155)
32 cd02967 mauD Methylamine utili 99.8 3E-21 7.5E-26 152.0 4.8 109 11-135 1-111 (114)
33 cd03009 TryX_like_TryX_NRX Try 99.8 1.1E-19 2.7E-24 142.4 5.4 109 12-134 1-114 (131)
34 COG2077 Tpx Peroxiredoxin [Pos 99.8 2.2E-19 5.5E-24 140.5 6.1 129 3-136 17-147 (158)
35 cd02964 TryX_like_family Trypa 99.7 1.7E-18 4.4E-23 135.0 5.5 105 18-135 5-115 (132)
36 cd02968 SCO SCO (an acronym fo 99.7 1.8E-17 4.5E-22 128.8 6.6 129 9-138 1-142 (142)
37 TIGR00385 dsbE periplasmic pro 99.7 2.8E-17 7.2E-22 127.5 3.5 128 5-149 36-169 (175)
38 COG0678 AHP1 Peroxiredoxin [Po 99.6 3.6E-15 9.3E-20 114.6 7.4 148 2-151 1-164 (165)
39 pfam02630 SCO1-SenC SCO1/SenC. 99.6 4.9E-15 1.2E-19 113.8 6.4 126 11-137 18-157 (159)
40 COG1999 Uncharacterized protei 99.5 6.6E-14 1.7E-18 106.8 9.0 141 12-156 49-204 (207)
41 KOG0541 consensus 99.4 1.8E-13 4.6E-18 104.2 5.4 149 1-151 6-170 (171)
42 KOG2792 consensus 99.4 1.7E-13 4.5E-18 104.2 4.8 150 6-156 113-279 (280)
43 PTZ00256 glutathione peroxidas 99.4 1.3E-12 3.3E-17 98.9 9.1 145 7-155 17-180 (183)
44 PTZ00056 glutathione peroxidas 99.4 9.7E-13 2.5E-17 99.7 7.7 144 7-155 16-177 (180)
45 PRK10606 btuE putative glutath 99.4 1.8E-12 4.7E-17 98.0 8.0 145 8-155 3-180 (183)
46 cd00340 GSH_Peroxidase Glutath 99.3 1E-11 2.6E-16 93.4 6.5 135 10-151 2-151 (152)
47 COG0386 BtuE Glutathione perox 99.2 7E-12 1.8E-16 94.4 3.9 141 9-155 4-159 (162)
48 TIGR02661 MauD methylamine deh 99.1 6.7E-11 1.7E-15 88.4 3.1 128 5-154 47-180 (189)
49 KOG1651 consensus 99.0 1.1E-09 2.8E-14 80.9 5.4 137 7-146 11-162 (171)
50 cd03008 TryX_like_RdCVF Trypar 98.9 2.5E-09 6.3E-14 78.8 4.4 97 25-134 20-127 (146)
51 cd02950 TxlA TRX-like protein 98.8 8.6E-09 2.2E-13 75.4 5.3 91 29-152 19-109 (142)
52 KOG2501 consensus 98.6 3.6E-08 9.3E-13 71.6 4.2 109 13-134 15-130 (157)
53 pfam00255 GSHPx Glutathione pe 98.6 2.4E-08 6.1E-13 72.7 2.7 80 12-93 3-91 (108)
54 TIGR02540 gpx7 putative glutat 98.5 2E-07 5.2E-12 67.0 5.2 136 11-155 3-152 (153)
55 pfam05988 DUF899 Bacterial pro 98.5 4E-07 1E-11 65.2 6.3 130 11-149 47-183 (211)
56 pfam00837 T4_deiodinase Iodoth 98.3 3.2E-06 8.1E-11 59.7 7.0 136 4-156 73-237 (237)
57 cd02963 TRX_DnaJ TRX domain, D 98.3 4E-06 1E-10 59.1 7.3 89 29-155 23-111 (111)
58 cd02949 TRX_NTR TRX domain, no 98.2 2.2E-06 5.7E-11 60.6 5.2 85 29-152 12-96 (97)
59 TIGR01068 thioredoxin thioredo 98.1 5.4E-06 1.4E-10 58.3 5.3 86 30-154 14-99 (101)
60 PRK09381 trxA thioredoxin; Pro 98.0 7.8E-06 2E-10 57.3 5.1 87 29-154 20-106 (109)
61 cd02956 ybbN ybbN protein fami 98.0 5E-06 1.3E-10 58.5 4.0 85 29-152 11-95 (96)
62 pfam00085 Thioredoxin Thioredo 98.0 2E-05 5.1E-10 54.8 7.0 87 29-154 17-103 (104)
63 cd02985 TRX_CDSP32 TRX family, 98.0 4.9E-06 1.3E-10 58.5 3.6 91 25-149 10-100 (103)
64 KOG4498 consensus 98.0 1.1E-05 2.9E-10 56.3 5.3 138 16-153 35-195 (197)
65 cd02951 SoxW SoxW family; SoxW 98.0 2.2E-05 5.7E-10 54.5 6.5 103 30-154 14-120 (125)
66 pfam09695 YtfJ_HI0045 Bacteria 98.0 2.6E-05 6.7E-10 54.1 6.6 138 4-155 15-174 (174)
67 cd02953 DsbDgamma DsbD gamma f 98.0 1.8E-05 4.6E-10 55.1 5.6 92 28-153 9-104 (104)
68 PRK10996 thioredoxin 2; Provis 97.9 4E-05 1E-09 52.9 6.3 88 29-155 51-138 (139)
69 cd02947 TRX_family TRX family; 97.9 2.2E-05 5.5E-10 54.6 4.9 84 29-152 9-92 (93)
70 cd02984 TRX_PICOT TRX domain, 97.8 4.3E-05 1.1E-09 52.8 6.0 85 29-153 13-97 (97)
71 PRK13703 conjugal pilus assemb 97.8 3.6E-05 9.1E-10 53.2 4.9 96 24-150 136-234 (247)
72 cd02997 PDI_a_PDIR PDIa family 97.7 8.6E-05 2.2E-09 50.9 6.2 88 29-152 16-104 (104)
73 cd02948 TRX_NDPK TRX domain, T 97.7 5.3E-05 1.4E-09 52.2 4.8 87 29-155 16-102 (102)
74 TIGR02740 TraF-like TraF-like 97.7 6.7E-05 1.7E-09 51.6 5.0 105 23-150 187-292 (306)
75 cd02994 PDI_a_TMX PDIa family, 97.5 0.00021 5.4E-09 48.5 5.8 87 28-154 15-101 (101)
76 cd03000 PDI_a_TMX3 PDIa family 97.5 0.00037 9.5E-09 47.0 6.8 91 28-155 13-103 (104)
77 TIGR02738 TrbB type-F conjugat 97.5 8.1E-05 2.1E-09 51.1 3.0 109 23-154 60-174 (176)
78 PTZ00051 thioredoxin; Provisio 97.4 0.00043 1.1E-08 46.6 5.7 75 29-140 17-91 (98)
79 pfam05176 ATP-synt_10 ATP10 pr 97.3 0.0003 7.5E-09 47.6 4.5 133 10-155 103-255 (255)
80 PRK13728 conjugal transfer pro 97.3 0.00044 1.1E-08 46.6 5.3 99 15-139 58-157 (181)
81 KOG0910 consensus 97.3 0.00038 9.7E-09 46.9 4.9 94 22-154 47-146 (150)
82 cd03004 PDI_a_ERdj5_C PDIa fam 97.3 0.00048 1.2E-08 46.3 5.0 87 29-152 18-104 (104)
83 KOG0907 consensus 97.2 0.00062 1.6E-08 45.6 5.2 86 29-155 20-105 (106)
84 COG4312 Uncharacterized protei 97.2 0.00022 5.7E-09 48.3 2.7 123 13-136 55-197 (247)
85 cd02998 PDI_a_ERp38 PDIa famil 97.2 0.00093 2.4E-08 44.5 5.7 88 29-152 17-105 (105)
86 cd03001 PDI_a_P5 PDIa family, 97.2 0.0013 3.4E-08 43.6 6.4 85 29-151 17-101 (103)
87 cd03005 PDI_a_ERp46 PDIa famil 97.2 0.00091 2.3E-08 44.6 5.3 87 28-152 14-102 (102)
88 cd02996 PDI_a_ERp44 PDIa famil 97.1 0.00073 1.9E-08 45.2 4.7 86 29-152 17-108 (108)
89 PRK00293 dipZ thiol:disulfide 97.1 0.00075 1.9E-08 45.1 4.1 94 29-157 479-577 (577)
90 cd02961 PDI_a_family Protein D 97.0 0.0018 4.6E-08 42.8 5.5 87 29-152 14-101 (101)
91 cd02989 Phd_like_TxnDC9 Phosdu 97.0 0.0014 3.6E-08 43.5 4.9 75 29-140 21-95 (113)
92 cd02959 ERp19 Endoplasmic reti 96.9 0.00033 8.5E-09 47.3 1.5 79 26-136 15-93 (117)
93 cd03002 PDI_a_MPD1_like PDI fa 96.9 0.0022 5.5E-08 42.3 5.3 91 29-152 17-108 (109)
94 TIGR01626 ytfJ_HI0045 conserve 96.8 0.0027 6.9E-08 41.7 5.4 139 4-156 23-183 (184)
95 cd02993 PDI_a_APS_reductase PD 96.8 0.00042 1.1E-08 46.7 1.0 45 29-74 20-64 (109)
96 TIGR01126 pdi_dom protein disu 96.5 0.0042 1.1E-07 40.6 4.6 88 29-154 13-105 (107)
97 TIGR01130 ER_PDI_fam protein d 96.5 0.0013 3.4E-08 43.6 1.7 61 30-92 18-79 (522)
98 PTZ00102 disulphide isomerase; 96.4 0.0089 2.3E-07 38.5 5.7 59 30-90 50-109 (479)
99 PHA02125 thioredoxin-like prot 96.3 0.013 3.4E-07 37.4 6.0 71 34-151 2-72 (75)
100 COG3118 Thioredoxin domain-con 96.3 0.0051 1.3E-07 40.0 3.8 45 29-75 42-86 (304)
101 cd02999 PDI_a_ERp44_like PDIa 96.2 0.0013 3.4E-08 43.6 0.7 83 29-151 17-99 (100)
102 cd02958 UAS UAS family; UAS is 96.2 0.013 3.3E-07 37.6 5.6 93 26-153 13-108 (114)
103 cd02960 AGR Anterior Gradient 96.1 0.0025 6.4E-08 41.9 1.7 44 28-73 21-65 (130)
104 KOG0190 consensus 96.1 0.0065 1.6E-07 39.4 3.7 62 29-92 41-103 (493)
105 cd02992 PDI_a_QSOX PDIa family 95.9 0.0034 8.8E-08 41.1 1.4 56 30-87 19-76 (114)
106 cd02957 Phd_like Phosducin (Ph 95.6 0.023 5.9E-07 36.0 4.8 74 29-140 23-96 (113)
107 TIGR01130 ER_PDI_fam protein d 95.3 0.012 3.1E-07 37.7 2.4 52 13-67 369-423 (522)
108 COG3054 Predicted transcriptio 95.1 0.043 1.1E-06 34.3 4.9 140 4-157 23-184 (184)
109 cd03003 PDI_a_ERdj5_N PDIa fam 94.9 0.0099 2.5E-07 38.2 1.0 83 29-150 17-99 (101)
110 cd02995 PDI_a_PDI_a'_C PDIa fa 94.8 0.017 4.4E-07 36.7 2.1 34 29-63 17-50 (104)
111 PRK08132 hypothetical protein; 94.7 0.43 1.1E-05 28.2 10.4 115 4-154 428-545 (549)
112 TIGR02739 TraF type-F conjugat 94.5 0.037 9.4E-07 34.7 3.2 92 25-141 154-250 (270)
113 TIGR02187 GlrX_arch Glutaredox 93.9 0.18 4.6E-06 30.5 5.7 49 93-156 75-127 (237)
114 COG4232 Thiol:disulfide interc 93.6 0.18 4.7E-06 30.5 5.3 95 29-156 473-568 (569)
115 COG0526 TrxA Thiol-disulfide i 93.5 0.027 6.8E-07 35.6 0.9 50 22-73 24-73 (127)
116 cd02979 PHOX_C FAD-dependent P 93.3 0.66 1.7E-05 27.0 7.8 128 7-152 1-164 (167)
117 cd02975 PfPDO_like_N Pyrococcu 92.7 0.36 9.3E-06 28.6 5.7 92 25-153 16-110 (113)
118 KOG0908 consensus 92.3 0.06 1.5E-06 33.4 1.3 46 25-73 16-61 (288)
119 pfam07976 Phe_hydrox_dim Pheno 91.5 0.35 9E-06 28.7 4.5 102 3-105 29-164 (169)
120 PTZ00102 disulphide isomerase; 91.3 0.084 2.1E-06 32.5 1.1 35 29-64 376-410 (479)
121 cd02962 TMX2 TMX2 family; comp 91.2 0.067 1.7E-06 33.1 0.6 42 32-74 49-90 (152)
122 pfam01216 Calsequestrin Calseq 90.6 1.5 3.9E-05 24.8 7.1 21 31-53 29-49 (350)
123 KOG0191 consensus 88.6 0.15 3.9E-06 31.0 0.7 54 29-87 46-99 (383)
124 KOG0190 consensus 87.7 0.21 5.5E-06 30.1 0.9 34 29-63 383-416 (493)
125 PRK10877 thiol:disulfide inter 87.5 1.1 2.8E-05 25.7 4.5 104 29-157 106-232 (232)
126 COG2143 Thioredoxin-related pr 86.7 2.2 5.7E-05 23.8 5.7 106 29-153 41-149 (182)
127 PRK06184 hypothetical protein; 86.7 3.1 8E-05 22.9 10.4 104 3-154 389-494 (503)
128 cd03006 PDI_a_EFP1_N PDIa fami 85.4 0.25 6.3E-06 29.7 0.3 70 19-92 16-88 (113)
129 pfam04592 SelP_N Selenoprotein 84.7 0.83 2.1E-05 26.4 2.7 127 7-151 7-144 (238)
130 cd01659 TRX_superfamily Thiore 83.8 0.65 1.6E-05 27.1 1.8 44 35-81 2-45 (69)
131 cd02952 TRP14_like Human TRX-r 82.5 0.89 2.3E-05 26.2 2.1 49 25-74 16-70 (119)
132 cd03023 DsbA_Com1_like DsbA fa 79.7 4.2 0.00011 22.1 4.7 33 29-62 4-36 (154)
133 PRK06183 mhpA 3-(3-hydroxyphen 79.6 6.1 0.00015 21.1 9.4 32 6-37 416-448 (554)
134 PRK08294 phenol 2-monooxygenas 79.5 6.1 0.00016 21.1 6.7 137 2-154 460-628 (634)
135 PRK11657 dsbG disulfide isomer 78.9 3.9 9.9E-05 22.3 4.4 34 95-141 209-242 (253)
136 TIGR01425 SRP54_euk signal rec 78.5 1.9 4.8E-05 24.2 2.7 107 6-133 92-216 (453)
137 KOG1731 consensus 77.1 0.32 8.2E-06 28.9 -1.6 55 32-88 59-115 (606)
138 KOG4614 consensus 75.8 4.3 0.00011 22.1 3.9 35 121-155 249-283 (287)
139 TIGR02200 GlrX_actino Glutared 75.3 1.4 3.5E-05 25.1 1.3 44 35-84 2-45 (78)
140 TIGR02196 GlrX_YruB Glutaredox 70.9 1.1 2.8E-05 25.7 -0.1 32 36-74 3-34 (79)
141 KOG3425 consensus 66.3 4.6 0.00012 21.9 2.3 51 25-76 19-77 (128)
142 pfam06110 DUF953 Eukaryotic pr 64.3 4.1 0.0001 22.2 1.7 48 27-75 16-69 (119)
143 TIGR00424 APS_reduc 5'-adenyly 61.7 2.7 6.9E-05 23.3 0.4 97 25-156 373-469 (469)
144 COG4098 comFA Superfamily II D 61.3 5 0.00013 21.7 1.7 25 127-156 404-428 (441)
145 pfam04278 Tic22 Tic22-like fam 61.2 12 0.0003 19.3 3.6 85 8-96 59-146 (259)
146 TIGR00411 redox_disulf_1 redox 60.3 16 0.00042 18.5 5.3 77 37-155 5-81 (82)
147 TIGR01832 kduD 2-deoxy-D-gluco 59.5 6.5 0.00017 21.0 2.0 98 27-150 2-110 (249)
148 cd02976 NrdH NrdH-redoxin (Nrd 54.3 2.7 6.9E-05 23.3 -0.6 31 36-73 3-33 (73)
149 cd07582 nitrilase_4 Uncharacte 52.1 22 0.00055 17.7 3.7 13 123-135 245-257 (294)
150 COG2179 Predicted hydrolase of 51.5 2.8 7.1E-05 23.2 -0.9 45 48-92 46-90 (175)
151 PRK00394 transcription factor; 50.1 24 0.00062 17.4 5.7 114 31-155 48-170 (178)
152 smart00594 UAS UAS domain. 49.3 25 0.00064 17.4 5.3 93 28-152 25-121 (122)
153 KOG0912 consensus 46.5 5.2 0.00013 21.5 -0.2 45 30-75 13-61 (375)
154 cd07564 nitrilases_CHs Nitrila 46.3 28 0.00071 17.1 4.1 14 122-135 241-254 (297)
155 PRK10819 transport protein Ton 42.7 32 0.00081 16.7 4.7 40 117-156 177-218 (243)
156 cd02955 SSP411 TRX domain, SSP 42.6 5.1 0.00013 21.6 -0.7 102 25-155 10-121 (124)
157 pfam00795 CN_hydrolase Carbon- 41.7 33 0.00083 16.6 3.7 17 122-138 94-110 (172)
158 TIGR02181 GRX_bact glutaredoxi 41.6 9.4 0.00024 20.0 0.5 48 36-90 2-54 (82)
159 cd03027 GRX_DEP Glutaredoxin ( 40.7 6.6 0.00017 20.9 -0.4 31 38-75 6-36 (73)
160 PRK05370 argininosuccinate syn 39.8 6.4 0.00016 21.0 -0.6 17 30-46 11-27 (447)
161 TIGR02177 PorB_KorB 2-oxoacid: 39.6 8.2 0.00021 20.3 -0.0 40 41-80 2-48 (302)
162 pfam06053 DUF929 Domain of unk 37.5 19 0.00049 18.0 1.6 35 29-64 57-91 (249)
163 COG0810 TonB Periplasmic prote 37.5 38 0.00097 16.2 4.6 40 117-156 179-220 (244)
164 PRK11478 hypothetical protein; 37.3 27 0.00069 17.1 2.4 54 63-136 74-127 (129)
165 COG0695 GrxC Glutaredoxin and 36.9 10 0.00027 19.7 0.2 14 37-50 5-18 (80)
166 TIGR01352 tonB_Cterm TonB fami 36.3 40 0.001 16.1 4.6 40 117-156 13-54 (81)
167 TIGR00936 ahcY adenosylhomocys 36.1 16 0.0004 18.6 1.0 42 4-47 176-227 (422)
168 cd03029 GRX_hybridPRX5 Glutare 35.7 9.9 0.00025 19.8 -0.1 17 31-49 1-17 (72)
169 PTZ00075 S-adenosyl-L-homocyst 35.1 17 0.00044 18.3 1.1 19 28-48 252-271 (476)
170 PRK12702 mannosyl-3-phosphogly 35.0 7.9 0.0002 20.4 -0.7 11 145-155 287-297 (302)
171 TIGR03381 agmatine_aguB N-carb 35.0 42 0.0011 16.0 3.3 14 122-135 227-240 (279)
172 TIGR02180 GRX_euk Glutaredoxin 34.9 10 0.00026 19.8 -0.2 48 35-85 2-50 (85)
173 cd03037 GST_N_GRX2 GST_N famil 34.5 10 0.00026 19.8 -0.2 54 35-97 3-56 (71)
174 cd03475 Rieske_SoxF_SoxL SoxF 34.2 41 0.0011 16.0 2.9 35 10-46 2-36 (171)
175 pfam10740 DUF2529 Protein of u 33.7 14 0.00035 19.0 0.3 52 43-97 89-146 (172)
176 PRK13287 amiF formamidase; Pro 33.7 44 0.0011 15.9 3.3 44 97-140 89-134 (333)
177 cd07565 aliphatic_amidase alip 32.1 47 0.0012 15.7 3.7 14 122-135 219-232 (291)
178 PRK10416 cell division protein 32.1 32 0.00082 16.7 2.0 90 30-133 293-390 (499)
179 cd07573 CPA N-carbamoylputresc 30.8 49 0.0012 15.6 3.4 13 123-135 231-243 (284)
180 pfam03544 TonB Gram-negative b 30.7 49 0.0013 15.6 3.6 38 118-156 16-56 (79)
181 PRK11869 2-oxoacid ferredoxin 30.6 12 0.0003 19.3 -0.4 12 144-155 271-282 (284)
182 cd07576 R-amidase_like Pseudom 29.7 51 0.0013 15.5 3.4 13 123-135 209-221 (254)
183 PRK00366 ispG 4-hydroxy-3-meth 29.7 15 0.00038 18.8 -0.0 64 30-97 25-89 (367)
184 cd07583 nitrilase_5 Uncharacte 29.5 52 0.0013 15.4 3.4 14 122-135 209-222 (253)
185 pfam12017 Transposase_37 Trans 29.1 15 0.00038 18.8 -0.1 20 137-156 187-206 (236)
186 cd02987 Phd_like_Phd Phosducin 28.7 31 0.00078 16.8 1.5 41 29-72 82-122 (175)
187 TIGR00495 crvDNA_42K DNA-bindi 28.3 13 0.00033 19.1 -0.5 37 97-136 309-345 (407)
188 PRK08244 hypothetical protein; 28.2 54 0.0014 15.3 3.9 32 6-37 393-426 (494)
189 TIGR02026 BchE magnesium-proto 28.1 19 0.00048 18.1 0.3 69 12-84 173-267 (506)
190 TIGR02495 NrdG2 anaerobic ribo 28.0 35 0.00089 16.5 1.6 135 21-155 6-165 (220)
191 PRK09628 oorB 2-oxoglutarate-a 27.7 16 0.00042 18.5 -0.1 11 37-47 13-23 (281)
192 COG1648 CysG Siroheme synthase 27.6 56 0.0014 15.2 4.3 116 27-155 9-146 (210)
193 cd03019 DsbA_DsbA DsbA family, 27.5 27 0.00069 17.2 1.0 33 29-62 14-46 (178)
194 pfam05369 MtmB Monomethylamine 27.1 49 0.0013 15.5 2.3 22 5-26 116-137 (457)
195 pfam11211 DUF2997 Protein of u 27.1 57 0.0014 15.2 3.8 31 123-154 2-32 (48)
196 cd07568 ML_beta-AS_like mammal 26.5 58 0.0015 15.1 4.0 13 123-135 233-245 (287)
197 COG0821 gcpE 1-hydroxy-2-methy 26.1 16 0.0004 18.6 -0.4 47 52-98 37-84 (361)
198 PRK04175 rpl7ae 50S ribosomal 25.7 49 0.0012 15.6 2.0 72 64-157 49-123 (123)
199 pfam04551 GcpE GcpE protein. I 25.6 21 0.00054 17.8 0.2 41 57-97 37-78 (345)
200 pfam05379 Peptidase_C23 Carlav 25.3 34 0.00086 16.6 1.1 73 52-136 6-80 (89)
201 cd07566 ScNTA1_like Saccharomy 25.2 61 0.0016 15.0 3.3 16 122-137 103-118 (295)
202 TIGR01752 flav_long flavodoxin 25.1 31 0.00079 16.8 0.9 45 26-71 83-127 (176)
203 cd02954 DIM1 Dim1 family; Dim1 24.6 26 0.00066 17.3 0.5 54 29-87 13-66 (114)
204 KOG0914 consensus 24.5 54 0.0014 15.3 2.1 36 30-66 144-179 (265)
205 pfam03190 DUF255 Protein of un 24.2 15 0.00038 18.8 -0.9 103 24-155 31-143 (163)
206 TIGR01511 ATPase-IB1_Cu copper 23.6 19 0.00048 18.1 -0.4 50 54-103 377-428 (545)
207 cd00652 TBP_TLF TATA box bindi 23.3 67 0.0017 14.7 5.0 114 31-155 47-168 (174)
208 cd07197 nitrilase Nitrilase su 22.5 69 0.0018 14.6 3.8 15 122-136 209-223 (253)
209 PRK12767 carbamoyl phosphate s 22.2 11 0.00029 19.5 -1.8 46 46-91 77-128 (325)
210 pfam05768 DUF836 Glutaredoxin- 22.2 24 0.00061 17.5 -0.1 52 36-93 3-54 (76)
211 cd04518 TBP_archaea archaeal T 22.1 71 0.0018 14.6 5.9 116 30-156 46-168 (174)
212 PRK10291 glyoxalase I; Provisi 21.7 72 0.0018 14.5 2.7 58 64-140 65-122 (129)
213 TIGR00995 3a0901s06TIC22 chlor 21.7 72 0.0018 14.5 2.3 83 10-96 88-173 (289)
214 TIGR01901 adhes_NPXG filamento 21.7 62 0.0016 14.9 1.9 12 122-133 67-78 (97)
215 TIGR01326 OAH_OAS_sulfhy O-ace 21.2 74 0.0019 14.5 2.7 92 7-104 233-344 (434)
216 cd07569 DCase N-carbamyl-D-ami 21.0 75 0.0019 14.4 4.2 13 123-135 248-260 (302)
217 PRK11033 zntA zinc/cadmium/mer 20.9 25 0.00064 17.3 -0.2 50 54-103 572-623 (739)
218 KOG1752 consensus 20.9 47 0.0012 15.7 1.2 19 28-48 11-29 (104)
219 cd04516 TBP_eukaryotes eukaryo 20.4 77 0.002 14.4 5.1 114 30-155 46-167 (174)
220 cd07581 nitrilase_3 Uncharacte 20.3 77 0.002 14.4 3.3 15 122-136 211-225 (255)
221 PRK05476 S-adenosyl-L-homocyst 20.2 39 0.001 16.1 0.7 18 28-47 206-224 (427)
No 1
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-44 Score=295.53 Aligned_cols=157 Identities=51% Similarity=0.901 Sum_probs=153.7
Q ss_pred CCCCCCCCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97777986537307886999788289869985999965113676631126100000000012333322234443211112
Q gi|254780212|r 1 MTSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKK 80 (157)
Q Consensus 1 M~~l~vG~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~ 80 (157)
||.|++|++||||+|++++|+.++|++++||+|||+|||++|||+|++|++.|++++++|++.|++|+|||+|+++++++
T Consensus 1 ~~~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~ 80 (157)
T COG1225 1 MMMLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKK 80 (157)
T ss_pred CCCCCCCCCCCCEEEECCCCCEEEHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
T ss_conf 98577999188758356999998548836982899987889998516999999998999986797899980899899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf 22210000000012344589985986666557665444210799988999799997688857899999999998509
Q gi|254780212|r 81 FHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLKQ 157 (157)
Q Consensus 81 ~~~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L~~ 157 (157)
|+++++++||+|||++++++++|||+.++.++|..+.++.|+|||||++|+|+++|+..++..|+++++++|++|+.
T Consensus 81 F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l~~ 157 (157)
T COG1225 81 FAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKLAE 157 (157)
T ss_pred HHHHHCCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 99982998556679737899984866313457642332233489989998699996589976619999999997529
No 2
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=100.00 E-value=3.4e-44 Score=292.82 Aligned_cols=155 Identities=39% Similarity=0.718 Sum_probs=151.4
Q ss_pred CCCCCCCCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97777986537307886999788289869985999965113676631126100000000012333322234443211112
Q gi|254780212|r 1 MTSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKK 80 (157)
Q Consensus 1 M~~l~vG~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~ 80 (157)
|+.|++|++||+|+|++++|+.++|++++||++||+|||++|||+|+.|++.|++.+++|+++|++|+|||.|+++++++
T Consensus 1 m~~l~vG~~aPdF~l~~~~g~~v~L~d~~gk~vvl~Fyp~~~tp~C~~e~~~f~d~~~~f~~~g~~VigIS~D~~~~~~~ 80 (156)
T PRK09437 1 MNPLKAGDIAPKFSLPDQDGEQVSLTDFQGKKVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISPDKPEKLSK 80 (156)
T ss_pred CCCCCCCCCCCCEEEECCCCCEEEHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
T ss_conf 99899979998708488999998779968997999997687899874688999999987532581899876888999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 222100000000123445899859866665576654442107999889997999976888578999999999985
Q gi|254780212|r 81 FHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 81 ~~~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L 155 (157)
|+++++++||+|||++++++++|||+.++.+.+..+.++.|+|||||++|+|+++|++.++.+|+++||++|+++
T Consensus 81 f~~~~~l~f~lLsD~~~~v~~~ygv~~~~~~~g~~~~g~~R~tfiID~~G~I~~v~~~v~~~~h~~~vL~~Lk~~ 155 (156)
T PRK09437 81 FAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDEDGKIEHVFDKFKTKDHHDVVLDYLKEN 155 (156)
T ss_pred HHHHHCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 999709997489889806999849975442356544788506999999998999978999875399999999852
No 3
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=100.00 E-value=7e-40 Score=266.30 Aligned_cols=145 Identities=34% Similarity=0.548 Sum_probs=134.0
Q ss_pred CCCCCCCEEEE----CCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98653730788----69997882898699859999651136766311261000000000123333222344432111122
Q gi|254780212|r 6 VGDKAPHFVLP----SNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKF 81 (157)
Q Consensus 6 vG~~aP~f~l~----~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~ 81 (157)
||++||+|+++ +.++++++|++++|||+||+|||++|||+|++|+++|++.+++|+++|++|+|||+|+++++++|
T Consensus 1 vGd~aP~F~l~~~~~~~~~~~v~lsd~~Gk~vvL~FyP~dfTp~Ct~E~~~f~~~~~ef~~~g~~vigIS~Ds~~sh~~~ 80 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAW 80 (173)
T ss_pred CCCCCCCCEEECCCCCCCCCEEEHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
T ss_conf 95868987602422898740876899689829999981789952279999999999999846967998607988999999
Q ss_pred CCCC-------CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCCCCCCHHHHHHHHH
Q ss_conf 2210-------000000012344589985986666557665444210799988999799997-68885789999999999
Q gi|254780212|r 82 HQKH-------NLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVK 153 (157)
Q Consensus 82 ~~~~-------~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~-~~~~~~~~~~eil~~i~ 153 (157)
++++ +++||+|||++++++++|||+.+..+ .+.|+||||||+|+|++++ ++..+++|++|+|++|+
T Consensus 81 ~~~~~~~~~~~~l~fplLsD~~~~v~~~yGv~~~~~g------~~~R~tfiID~~g~Ir~~~~~~~~~gr~~~EiLr~l~ 154 (173)
T cd03015 81 RNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEG------VALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLD 154 (173)
T ss_pred HHHHHHHCCCCCCCCCEEECCHHHHHHHHCCCCCCCC------CCCEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8768975687764467677763699998199756568------7751799989998699999738998989999999999
Q ss_pred HHH
Q ss_conf 850
Q gi|254780212|r 154 SLK 156 (157)
Q Consensus 154 ~L~ 156 (157)
+||
T Consensus 155 aLq 157 (173)
T cd03015 155 ALQ 157 (173)
T ss_pred HHH
T ss_conf 862
No 4
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=100.00 E-value=1.1e-39 Score=265.01 Aligned_cols=148 Identities=22% Similarity=0.370 Sum_probs=136.0
Q ss_pred CCCCCCCCCCCEEEECCC-CC--EEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 777798653730788699-97--882898699859999651136766311261000000000123333222344432111
Q gi|254780212|r 2 TSLSVGDKAPHFVLPSND-EQ--EISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASH 78 (157)
Q Consensus 2 ~~l~vG~~aP~f~l~~~~-g~--~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~ 78 (157)
|+| +|++||+|+++... |+ +++|+||+|||+||+|||++|||+|++|+.+|++++++|+++|++++|||+|+.++|
T Consensus 1 M~l-vG~~aPdF~~~a~~~g~~~~isl~d~~Gkw~VLffyP~DFTpVCttEl~~~~~~~~eF~~~n~~vlgiS~Ds~~sH 79 (187)
T TIGR03137 1 MSL-INTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVH 79 (187)
T ss_pred CCC-CCCCCCCCEEEEEECCEEEEEEHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
T ss_conf 985-6888999888778789268975899699759999950688887708999999999999977997999855988999
Q ss_pred CCCCCCC----CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE-ECCCCCCCCHHHHHHHHH
Q ss_conf 1222210----00000001234458998598666655766544421079998899979999-768885789999999999
Q gi|254780212|r 79 KKFHQKH----NLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVLKMVK 153 (157)
Q Consensus 79 ~~~~~~~----~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~-~~~~~~~~~~~eil~~i~ 153 (157)
++|++.. +++||+++|++++++++|||+.+..+ .+.|++|||||+|+|+++ .|+.+++||++|+|+.|+
T Consensus 80 ~aW~~~~~~~g~i~fPllaD~~~~vs~~yGvl~~~~g------~a~Ra~FIIDp~g~Ir~~~~~~~~vGRn~~EiLR~l~ 153 (187)
T TIGR03137 80 KAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAG------LADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred HHHHHHHHHHCCCCCCEECCCCCHHHHHCCCCCCCCC------CCEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 9997427642772330442886258998297537888------6146899999999099999789987859999999999
Q ss_pred HHH
Q ss_conf 850
Q gi|254780212|r 154 SLK 156 (157)
Q Consensus 154 ~L~ 156 (157)
+||
T Consensus 154 AlQ 156 (187)
T TIGR03137 154 AAQ 156 (187)
T ss_pred HHH
T ss_conf 877
No 5
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=100.00 E-value=6.5e-39 Score=260.35 Aligned_cols=148 Identities=30% Similarity=0.520 Sum_probs=135.6
Q ss_pred CCCCCCCCCCEE----EECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 777986537307----8869997882898699859999651136766311261000000000123333222344432111
Q gi|254780212|r 3 SLSVGDKAPHFV----LPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASH 78 (157)
Q Consensus 3 ~l~vG~~aP~f~----l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~ 78 (157)
..++|++||+|+ +++.+.++++|++|+|||+||+|||++|||+|++|+.+|++.+++|+++|++++|||+|+.++|
T Consensus 5 ~arIG~~APdF~~~a~~~~~~~~~vsLsdy~GkwvvL~fyP~dfT~vCttEl~~~~~~~~eF~~~~~~vigiS~Ds~~sH 84 (199)
T PTZ00253 5 DAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAH 84 (199)
T ss_pred CCCCCCCCCCCEEEEECCCCCEEEEEHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
T ss_conf 66559939998405571799556885189699859999810667886727999999999999777978999978838789
Q ss_pred CCCCCCC-------CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE-ECCCCCCCCHHHHHH
Q ss_conf 1222210-------00000001234458998598666655766544421079998899979999-768885789999999
Q gi|254780212|r 79 KKFHQKH-------NLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVLK 150 (157)
Q Consensus 79 ~~~~~~~-------~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~-~~~~~~~~~~~eil~ 150 (157)
++|++.. +++||+++|.+++++++|||+.+..+ ...|++|||||+|+|+++ .++.+++|+++|+|+
T Consensus 85 ~aW~~~~~~~~g~~~i~fPliaD~~~~is~~yGvl~e~~G------~a~Ra~FIIDp~giIr~~~v~~~~vGRnv~EiLR 158 (199)
T PTZ00253 85 LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQG------VAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLR 158 (199)
T ss_pred HHHHCCHHHHCCCCCCEEEEEECCCCHHHHHCCCCCCCCC------CEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHH
T ss_conf 9884070755885760121575786568897196026689------5267899988998499999779876859999999
Q ss_pred HHHHHH
Q ss_conf 999850
Q gi|254780212|r 151 MVKSLK 156 (157)
Q Consensus 151 ~i~~L~ 156 (157)
.|++||
T Consensus 159 ~l~AlQ 164 (199)
T PTZ00253 159 LLEAFQ 164 (199)
T ss_pred HHHHHH
T ss_conf 999876
No 6
>PRK13190 putative peroxiredoxin; Provisional
Probab=100.00 E-value=1.8e-38 Score=257.66 Aligned_cols=147 Identities=30% Similarity=0.513 Sum_probs=135.3
Q ss_pred CCCCCCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77798653730788699978828986998599996511367663112610000000001233332223444321111222
Q gi|254780212|r 3 SLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFH 82 (157)
Q Consensus 3 ~l~vG~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~ 82 (157)
-|++|++||||++.++.| +++|++++|||+||+|||++|||+|++|+.+|++.+++|+++|++++|||+|+.++|++|+
T Consensus 1 pL~iG~~aPdF~~~t~~g-~i~l~dy~Gkw~vlffyP~DfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sH~aW~ 79 (202)
T PRK13190 1 PVKLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCCCCCEECCCCC-CEEEHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
T ss_conf 997888898868616888-3972885998799999537889867179999999899999769889999675399999985
Q ss_pred CC----C--CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE-ECCCCCCCCHHHHHHHHHHH
Q ss_conf 21----0--00000001234458998598666655766544421079998899979999-76888578999999999985
Q gi|254780212|r 83 QK----H--NLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 83 ~~----~--~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~-~~~~~~~~~~~eil~~i~~L 155 (157)
+. . .++||+++|++++++++|||+.+..+ .+.|++|||||+|+|+++ .++.+++||++|+|+.|++|
T Consensus 80 ~~~~~~~G~~v~fPliaD~~~~is~~yG~l~~~~g------~a~R~~FIIDp~g~Ir~~~~~~~~vGRn~~EiLR~ldAl 153 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADIDKELAREYNLIDENSG------ATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred HCHHHHCCCCCCCCCCCCCCCHHHHHCCCEECCCC------CEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 68798569331223433895057897498007889------657799999999849999975889602789999999988
Q ss_pred H
Q ss_conf 0
Q gi|254780212|r 156 K 156 (157)
Q Consensus 156 ~ 156 (157)
|
T Consensus 154 q 154 (202)
T PRK13190 154 Q 154 (202)
T ss_pred H
T ss_conf 7
No 7
>PRK13599 putative peroxiredoxin; Provisional
Probab=100.00 E-value=2.7e-38 Score=256.51 Aligned_cols=148 Identities=27% Similarity=0.428 Sum_probs=137.2
Q ss_pred CCCCCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77986537307886999788289869985999965113676631126100000000012333322234443211112222
Q gi|254780212|r 4 LSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQ 83 (157)
Q Consensus 4 l~vG~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~ 83 (157)
..+|++||+|++++++|+...+++++|||+||+|||++|||+|++|+.+|++.+++|+++|++++|+|+|+.++|++|.+
T Consensus 2 ~~vGd~aPdF~l~tt~G~~~~~~d~~Gkw~VLffyP~DfTpvCttEl~~f~~~~~eF~~~n~~vigiS~Ds~~sH~~W~~ 81 (215)
T PRK13599 2 KLLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCCCEEECCCCCEECHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
T ss_conf 85787589878626899785189959988999982079998566889999999999997598899984787889999985
Q ss_pred ------CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE-ECCCCCCCCHHHHHHHHHHHH
Q ss_conf ------1000000001234458998598666655766544421079998899979999-768885789999999999850
Q gi|254780212|r 84 ------KHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVLKMVKSLK 156 (157)
Q Consensus 84 ------~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~-~~~~~~~~~~~eil~~i~~L~ 156 (157)
..+++||+++|++++++++|||+.+... ....|++|||||+|+|+++ +|+..++||++|+|+.|++||
T Consensus 82 ~i~~~~g~~i~FPiiaD~~~~ia~~yGml~~~~g-----~~t~R~~FiIDp~~~ir~~~~yp~~vGRnvdEiLR~ldAlQ 156 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKG-----TNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQ 156 (215)
T ss_pred HHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCCC-----CCEEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 3887569775122551540659998498267888-----75775899989999489999789877869999999999998
No 8
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=100.00 E-value=2.9e-38 Score=256.33 Aligned_cols=146 Identities=30% Similarity=0.450 Sum_probs=134.0
Q ss_pred CCCCCCCEEEECCCCCEEEHHHHCC-CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9865373078869997882898699-859999651136766311261000000000123333222344432111122221
Q gi|254780212|r 6 VGDKAPHFVLPSNDEQEISLLALGG-SKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQK 84 (157)
Q Consensus 6 vG~~aP~f~l~~~~g~~~~l~~l~g-k~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~ 84 (157)
+|++||+|++.++.|+ ++|+++.| ||+||+|||++|||+|++|+.+|++.+++|+++|++++|||+|+.++|++|.+.
T Consensus 1 vG~~aPdF~~~~~~g~-i~l~dy~G~k~vvlffyP~dfT~vCttEl~~~~~~~~eF~~~~~~vlgiS~Ds~~sH~aW~~~ 79 (203)
T cd03016 1 LGDTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIED 79 (203)
T ss_pred CCCCCCCCEEECCCCC-EEHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHC
T ss_conf 9785898786457785-978997799789999666668987837899999989999974987999737868878888658
Q ss_pred ------CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE-ECCCCCCCCHHHHHHHHHHHH
Q ss_conf ------000000001234458998598666655766544421079998899979999-768885789999999999850
Q gi|254780212|r 85 ------HNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVLKMVKSLK 156 (157)
Q Consensus 85 ------~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~-~~~~~~~~~~~eil~~i~~L~ 156 (157)
..++||+++|++++++++|||+.+..+. ..+.|++|||||+|+|+++ .++.+++||++|+|+.|++||
T Consensus 80 ~~~~~g~~v~fPllaD~~~~ia~~yGvl~~~~g~----~~a~R~~FIIDp~g~Ir~~~v~~~~vGRnvdEiLR~ldAlQ 154 (203)
T cd03016 80 IEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGS----TLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC----CCEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 8975696623142227862588873443713488----63367899989998399999758776668899999999998
No 9
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=100.00 E-value=6.9e-38 Score=254.06 Aligned_cols=146 Identities=21% Similarity=0.348 Sum_probs=134.0
Q ss_pred CCCCCCCCEEEECCCC---CEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7986537307886999---7882898699859999651136766311261000000000123333222344432111122
Q gi|254780212|r 5 SVGDKAPHFVLPSNDE---QEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKF 81 (157)
Q Consensus 5 ~vG~~aP~f~l~~~~g---~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~ 81 (157)
.+|++||+|++....+ .+++++|++|||+||+|||++|||+|++|+.+|++.+++|+++|++++|||+|+.++|++|
T Consensus 3 lvg~~ap~F~~~a~~~g~~~~v~l~d~~Gkw~VLffyP~DFT~VCtTEl~~~~~~~~eF~~~n~~vigiS~Ds~~sH~aW 82 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW 82 (187)
T ss_pred CCCCCCCCCEEEEEECCEEEEEEHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
T ss_conf 55770999877667699778985699599879999827998985989999999889999974997999925988999999
Q ss_pred CCCC----CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE-ECCCCCCCCHHHHHHHHHHHH
Q ss_conf 2210----00000001234458998598666655766544421079998899979999-768885789999999999850
Q gi|254780212|r 82 HQKH----NLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVLKMVKSLK 156 (157)
Q Consensus 82 ~~~~----~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~-~~~~~~~~~~~eil~~i~~L~ 156 (157)
++.. +++||+++|++++++++||++.+... ...|++|||||+|+|+++ .|+.+++|+++|+|+.|++||
T Consensus 83 ~~~~~~~~~i~fPlisD~~~~is~~ygvl~~~~g------~a~Ra~FIIDp~g~Ir~~~~~~~~vGRn~~EiLR~l~AlQ 156 (187)
T PRK10382 83 HSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG------LADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred HHHHHHCCCCCCCEEECCCCHHHHHCCCCCCCCC------EEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 8645331587886578886579998299667888------0577899988998499999789998869999999999877
No 10
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=100.00 E-value=1e-37 Score=253.06 Aligned_cols=148 Identities=27% Similarity=0.434 Sum_probs=134.5
Q ss_pred CCCCCCCCCCCEEEECCCC---CEEEHHHHCC-CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7777986537307886999---7882898699-85999965113676631126100000000012333322234443211
Q gi|254780212|r 2 TSLSVGDKAPHFVLPSNDE---QEISLLALGG-SKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIAS 77 (157)
Q Consensus 2 ~~l~vG~~aP~f~l~~~~g---~~~~l~~l~g-k~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~ 77 (157)
|+..+|++||+|++....| ++++|+++.| ||+||+|||++|||+|++|+.+|++.+++|+++|++++|||+|+.++
T Consensus 1 M~~liG~~aPdF~~~a~~~~~~~~i~lsdy~g~kwvvLffyP~dFT~VCttEl~~~~~~~~eF~~~~~~v~giS~Ds~~s 80 (194)
T PTZ00137 1 MSSLVGKEAPSFKAEAVFGDNFGEFNLSDYFGDSYVLLVFYPLDFTFVCPSELLGFSKRLDEFEERNVKVLGCSVDSKFS 80 (194)
T ss_pred CCHHHCCCCCCCEEEEEECCCEEEEEHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf 92564983999892666289500886399779967999980377887550899999999999997598899996783888
Q ss_pred CCCCCCC-------CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE-ECCCCCCCCHHHHH
Q ss_conf 1122221-------000000001234458998598666655766544421079998899979999-76888578999999
Q gi|254780212|r 78 HKKFHQK-------HNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVL 149 (157)
Q Consensus 78 ~~~~~~~-------~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~-~~~~~~~~~~~eil 149 (157)
|++|++. .+++||+++|.+++++++|||+.++ ....|++|||||+|+|+++ .++..++||++|+|
T Consensus 81 H~aW~~~~~~~~gi~~i~fPllaD~~~~ia~~yGvl~~~-------G~a~RatFiIDp~g~Ir~~~v~~~~vGRnv~EiL 153 (194)
T PTZ00137 81 HLAWKKTDLRKGGVGNLKHPLFSDITRSISKSFGLLRDD-------GFSLRASVLIDKAGVVQHLAVNDLGIGRSVDETL 153 (194)
T ss_pred HHHHHHCHHHHCCCCCCCCCEEECCCCHHHHHCCCCCCC-------CCEEEEEEEECCCCEEEEEEECCCCCCCCHHHHH
T ss_conf 999962348658867733445636733589976986368-------8216789999999979999977987684989999
Q ss_pred HHHHHHH
Q ss_conf 9999850
Q gi|254780212|r 150 KMVKSLK 156 (157)
Q Consensus 150 ~~i~~L~ 156 (157)
+.|++||
T Consensus 154 R~l~Alq 160 (194)
T PTZ00137 154 RIFDAVQ 160 (194)
T ss_pred HHHHHHH
T ss_conf 9999866
No 11
>PRK13189 peroxiredoxin; Provisional
Probab=100.00 E-value=3.8e-37 Score=249.47 Aligned_cols=147 Identities=29% Similarity=0.452 Sum_probs=133.9
Q ss_pred CCCCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79865373078869997882898699859999651136766311261000000000123333222344432111122221
Q gi|254780212|r 5 SVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQK 84 (157)
Q Consensus 5 ~vG~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~ 84 (157)
.+|++||+|++.++.|+...+++++|||+||+|||++|||+|++|+.+|++.+++|+++|++++|||+|+.++|++|++.
T Consensus 3 ~iG~~aPdF~~~~~~G~~~l~~~~~gkwvvLffyP~DFT~VCttEl~~~~~~~~eF~~~~~~vigiS~Ds~~sH~aW~~~ 82 (215)
T PRK13189 3 LIGDKFPEFEVKTTHGPIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRKLNTELIGLSIDQVFSHIKWVEW 82 (215)
T ss_pred CCCCCCCCCEEECCCCCEEEHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHC
T ss_conf 68788999888615796885798399889999787778986845999999999999871977999946858689998518
Q ss_pred ------CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE-ECCCCCCCCHHHHHHHHHHHH
Q ss_conf ------000000001234458998598666655766544421079998899979999-768885789999999999850
Q gi|254780212|r 85 ------HNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVLKMVKSLK 156 (157)
Q Consensus 85 ------~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~-~~~~~~~~~~~eil~~i~~L~ 156 (157)
..++||+++|++++++++|||+.+.+. ..+.|++|||||+|+|+++ .|+.+++||++|+|+.|++||
T Consensus 83 ~~~~~G~~i~fPliaD~~~~Is~~yGvl~~~~~-----~~a~R~~FIIDp~g~Ir~~~v~~~~vGRnvdEiLR~ldAlQ 156 (215)
T PRK13189 83 IKEKLGVEIEFPIIADDDGEIAKKLGMIHPGKG-----TNTVRAVFVVDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 156 (215)
T ss_pred HHHHCCCCEEEEEEECCCCHHHHHCCCCCCCCC-----CCEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 787469650344786672648897498025888-----74674799999998699999838886558999999999998
No 12
>PRK13191 putative peroxiredoxin; Provisional
Probab=100.00 E-value=5.8e-37 Score=248.36 Aligned_cols=148 Identities=27% Similarity=0.420 Sum_probs=133.6
Q ss_pred CCCCCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77986537307886999788289869985999965113676631126100000000012333322234443211112222
Q gi|254780212|r 4 LSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQ 83 (157)
Q Consensus 4 l~vG~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~ 83 (157)
-.+|++||||++.+++|+...+++++|||+||+|||++|||+|++|+.+|++.+++|+++|++++|+|+|+.++|.+|.+
T Consensus 8 P~iG~~aPdF~~~tt~G~i~l~d~~~gkw~VLffyP~DFTpVCtTEl~~f~~~~~eF~k~n~~vlg~S~Ds~~sH~aW~~ 87 (230)
T PRK13191 8 PLIGEKFPEMEVITTHGKIKLPDDYKGKWFVLFSHPGDFTPVCTTEFYSFAKRYEDFKKLNTELIGLSVDSNISHIEWVN 87 (230)
T ss_pred CCCCCCCCCCEEECCCCCEEEHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
T ss_conf 76799289988143689587389819988999978898899597999999988999997599899997896888999987
Q ss_pred ----C--CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE-ECCCCCCCCHHHHHHHHHHHH
Q ss_conf ----1--000000001234458998598666655766544421079998899979999-768885789999999999850
Q gi|254780212|r 84 ----K--HNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVLKMVKSLK 156 (157)
Q Consensus 84 ----~--~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~-~~~~~~~~~~~eil~~i~~L~ 156 (157)
. ..++||+++|++++++++|||+...+ .....|++|||||+|+|+++ +|+.+++||++|+|+.|++||
T Consensus 88 ~i~~~~g~~i~fPiiaD~~~~ia~~yGml~~e~-----~~~tvRavFIIDP~g~Ir~~~~yp~~vGRNvdEiLRvldALQ 162 (230)
T PRK13191 88 WIEKNLKVEIPFPIIADPMGNVAKRLGMIHAES-----STSTVRAVFIVDDKGTVRLIMYYPLEIGRNIDEILRAIKALQ 162 (230)
T ss_pred HHHHHCCCCCCEEEEECCCCHHHHHCCCCCCCC-----CCCEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 689835977530266568677999859814477-----864366899999998299999679776859899999999998
No 13
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=100.00 E-value=1.1e-36 Score=246.58 Aligned_cols=145 Identities=32% Similarity=0.493 Sum_probs=132.2
Q ss_pred CCCCCCCCCEEEECCCCCEEEHHHHCC-CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 779865373078869997882898699-8599996511367663112610000000001233332223444321111222
Q gi|254780212|r 4 LSVGDKAPHFVLPSNDEQEISLLALGG-SKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFH 82 (157)
Q Consensus 4 l~vG~~aP~f~l~~~~g~~~~l~~l~g-k~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~ 82 (157)
|++|++||+|+|++.+|+.++|+++.| +++||+|||++|||+|+.|+++|++.+++|++.|+++++||.|+++.+++|+
T Consensus 1 l~vGd~aP~F~l~~~~g~~v~L~d~~g~~~vvl~F~p~~~cp~C~~e~~~~~~~~~~~~~~~v~Vv~IS~D~~~~~~~f~ 80 (149)
T cd03018 1 LEVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWA 80 (149)
T ss_pred CCCCCCCCCEEEECCCCCEEEHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
T ss_conf 98979886979499998998689976998099999888899975878988888888763478399963699999999999
Q ss_pred CCCCCCCCCHHH--HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCC-CCCCHHHHHHHHHH
Q ss_conf 210000000012--3445899859866665576654442107999889997999976888-57899999999998
Q gi|254780212|r 83 QKHNLSITLLAD--ESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVT-LKNHAQSVLKMVKS 154 (157)
Q Consensus 83 ~~~~~~fpil~D--~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~-~~~~~~eil~~i~~ 154 (157)
++++++||+|+| ++++++++||++.+.. ..+.|+|||||++|+|+|+|.... ..++..|++++|++
T Consensus 81 ~~~~l~fpllsD~~~~~~va~~ygv~~~~~------g~~~r~tfiID~~G~V~~~~v~~~~~~r~~~~~~~~l~a 149 (149)
T cd03018 81 EENGLTFPLLSDFWPHGEVAKAYGVFDEDL------GVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALDA 149 (149)
T ss_pred HHHCCCCEEEEECCCCCCHHHHCCCCCCCC------CCCCCEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHCC
T ss_conf 987999619996898702498869950677------984488999979998999999079967885799999659
No 14
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-36 Score=245.52 Aligned_cols=149 Identities=31% Similarity=0.570 Sum_probs=137.5
Q ss_pred CCCCCCCCCCCEEEECC-CCC---EEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77779865373078869-997---88289869985999965113676631126100000000012333322234443211
Q gi|254780212|r 2 TSLSVGDKAPHFVLPSN-DEQ---EISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIAS 77 (157)
Q Consensus 2 ~~l~vG~~aP~f~l~~~-~g~---~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~ 77 (157)
|++.+|+++|+|++... .|+ +++++++.|||+||+|||++|||+|++|+.+|++.|++|+++|++|+|+|+|+.++
T Consensus 1 ~~~lIg~~aP~F~~~a~~~~~~~~~i~l~~~~gkw~VLff~P~DFTfVCpTEi~af~~~~~eF~~~g~eVigvS~Ds~fs 80 (194)
T COG0450 1 MMSLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFS 80 (194)
T ss_pred CCCCCCCCCCCCEEEEEECCCEEEEEECHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf 95535875898388878568503678636656857999914688785584019999765288998599899996684898
Q ss_pred CCCCCCC----CC---CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE-ECCCCCCCCHHHHH
Q ss_conf 1122221----00---0000001234458998598666655766544421079998899979999-76888578999999
Q gi|254780212|r 78 HKKFHQK----HN---LSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVL 149 (157)
Q Consensus 78 ~~~~~~~----~~---~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~-~~~~~~~~~~~eil 149 (157)
+.+|.+. .+ ++|||++|.+++++++|||+.+.++. +.|++|||||+|+||++ +++.+.+++++|+|
T Consensus 81 H~aW~~~~~~~~gi~~i~~P~iaD~~~~vs~~ygvl~~~~g~------a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEil 154 (194)
T COG0450 81 HKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGL------ALRGTFIIDPDGVIRHILVNPLTIGRNVDEIL 154 (194)
T ss_pred HHHHHHCHHHCCCCCCEECCEEECCCHHHHHHCCCCCCCCCC------CEEEEEEECCCCEEEEEEEECCCCCCCHHHHH
T ss_conf 999973677509835420066876822688970980567772------04689999999829999972687775789999
Q ss_pred HHHHHHH
Q ss_conf 9999850
Q gi|254780212|r 150 KMVKSLK 156 (157)
Q Consensus 150 ~~i~~L~ 156 (157)
+.|++||
T Consensus 155 R~idAlq 161 (194)
T COG0450 155 RVIDALQ 161 (194)
T ss_pred HHHHHHH
T ss_conf 9999988
No 15
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=100.00 E-value=1e-36 Score=246.80 Aligned_cols=140 Identities=50% Similarity=0.900 Sum_probs=131.5
Q ss_pred CCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65373078869997882898699859999651136766311261000000000123333222344432111122221000
Q gi|254780212|r 8 DKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNL 87 (157)
Q Consensus 8 ~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~ 87 (157)
|+||+|+|++.+|+.++|++++||++||+|||++|||+|+.|++.|++.+++|+++|+++++||.|+++.+++|++++++
T Consensus 1 d~APdF~l~~~~G~~~~L~d~~Gk~vvl~F~p~~~~p~C~~e~~~~~~~~~~~~~~g~~vv~IS~d~~~~~~~~~~~~~~ 80 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGL 80 (140)
T ss_pred CCCCCEEEECCCCCEEEHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCC
T ss_conf 98898486889989987899799849999966878997889999999999998741984899827889999999998699
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHH
Q ss_conf 000001234458998598666655766544421079998899979999768885789999999
Q gi|254780212|r 88 SITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLK 150 (157)
Q Consensus 88 ~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~ 150 (157)
+||+|+|++++++++||++..... ....+.|+|||||++|+|+++|++..++.|++|+|+
T Consensus 81 ~fp~l~D~~~~v~~~ygv~~~~~~---~~~~~~R~tfvId~~G~I~~i~~~~~~~~~~~~~l~ 140 (140)
T cd03017 81 PFPLLSDPDGKLAKAYGVWGEKKK---KYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVLE 140 (140)
T ss_pred CCEEEEECCHHHHHHCCCCCCCCC---CCCCEEEEEEEECCCCEEEEEECCCCCCCHHHHHHC
T ss_conf 837999497399998699865766---667476799999899989999858994548989629
No 16
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=100.00 E-value=1.4e-33 Score=227.55 Aligned_cols=139 Identities=29% Similarity=0.440 Sum_probs=125.4
Q ss_pred CCCCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79865373078869997882898699859999651136766311261000000000123333222344432111122221
Q gi|254780212|r 5 SVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQK 84 (157)
Q Consensus 5 ~vG~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~ 84 (157)
+||++||+|+|++.+|+.++|++++||++||+|||+++||+|+.|++.|++.+++|. |+++++||.|+++++++|+++
T Consensus 1 kVGd~aPdF~l~~~~~~~v~lsd~~Gk~~Vl~fyP~~~T~vC~~e~~~f~~~~~~f~--~~~v~gIS~Ds~~s~~~f~~~ 78 (143)
T cd03014 1 KVGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWCGA 78 (143)
T ss_pred CCCCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCC--CCEEEEEECCCHHHHHHHHHH
T ss_conf 999888883988899999876995998699999807899845315999999987358--968999978999999999987
Q ss_pred CCCC-CCCHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEC--CCCCCCCHHHHHHH
Q ss_conf 0000-000012-3445899859866665576654442107999889997999976--88857899999999
Q gi|254780212|r 85 HNLS-ITLLAD-ESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWK--PVTLKNHAQSVLKM 151 (157)
Q Consensus 85 ~~~~-fpil~D-~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~--~~~~~~~~~eil~~ 151 (157)
++++ |++||| .+++++++||++.+..+ .+.|+|||||++|+|+|++. .....+++++++++
T Consensus 79 ~~l~~~~lLSD~~~~~~~~~yGv~~~~~g------~~~R~tfiID~~G~I~~~e~~~~~~~epd~~~~~~a 143 (143)
T cd03014 79 EGVDNVTTLSDFRDHSFGKAYGVLIKDLG------LLARAVFVIDENGKVIYVELVPEITDEPDYEAALAA 143 (143)
T ss_pred CCCCCCEEEECCCCCCHHHHHCCEECCCC------CEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHCC
T ss_conf 69989648464999736787290550179------422189999999989999967886789898999519
No 17
>PRK00522 tpx thiol peroxidase; Provisional
Probab=100.00 E-value=2.6e-33 Score=225.99 Aligned_cols=147 Identities=25% Similarity=0.371 Sum_probs=130.5
Q ss_pred CCCCCCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77798653730788699978828986998599996511367663112610000000001233332223444321111222
Q gi|254780212|r 3 SLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFH 82 (157)
Q Consensus 3 ~l~vG~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~ 82 (157)
.+++||+||+|+|++.+++.++|++++||++||+|||++|||+|+.|++.|++.+++|. |+++++||.|+++++++|+
T Consensus 18 ~~~VGd~APdF~l~~~~~~~v~Lsd~~Gk~vVL~f~P~~~TpvC~~e~~~f~~~~~~~~--~~~v~gIS~D~~~a~~~f~ 95 (168)
T PRK00522 18 LPQVGSKAPDFTLVAKDLSDVSLSQFAGKRKVLNIFPSIDTGVCAASVRKFNQLAAELD--NTVVLCVSADLPFAQSRFC 95 (168)
T ss_pred CCCCCCCCCCCEEECCCCCEEEHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHHHHH
T ss_conf 99888999881888899999865883998599999736888652778988999998635--9749999689989999999
Q ss_pred CCCCCC-CCCHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE--CCCCCCCCHHHHHHHHHH
Q ss_conf 210000-000012-344589985986666557665444210799988999799997--688857899999999998
Q gi|254780212|r 83 QKHNLS-ITLLAD-ESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIW--KPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 83 ~~~~~~-fpil~D-~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~--~~~~~~~~~~eil~~i~~ 154 (157)
++++++ +.+||| .+++++++||++..... ......|++||||++|+|+|++ ......+|+++++++||+
T Consensus 96 ~~~~~~~~~~lsd~~~~~~~~~yGvl~~~~~---~~g~~~Ra~FVID~~G~I~y~e~v~~~~~~pdyd~~l~alka 168 (168)
T PRK00522 96 GAEGLENVITLSTFRDAEFGQDYGVAIADGP---LKGLLARAVVVLDEDDNVIYSELVDEITTEPDYDAALAALKA 168 (168)
T ss_pred HHCCCCCCEECCCCCCCHHHHHCCCEECCCC---CCCCEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHCC
T ss_conf 8649988667041677638997095751462---259475189999999979999987888889899999998619
No 18
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.97 E-value=2.8e-32 Score=219.59 Aligned_cols=138 Identities=38% Similarity=0.551 Sum_probs=124.1
Q ss_pred CCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 53730788699978828986998599996511367663112610000000001233332223444321111222210-00
Q gi|254780212|r 9 KAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKH-NL 87 (157)
Q Consensus 9 ~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~-~~ 87 (157)
+||+|+|++.+|++++|++++||++||+|||++|||+|+.|+++|++.+++|++.|+++++||.|+++.+++|++++ ++
T Consensus 1 kAP~f~l~~~~g~~~~l~~~~gk~vvl~f~p~~~~p~C~~e~~~~~~~~~~~~~~g~~vv~Is~d~~~~~~~~~~~~~~~ 80 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGL 80 (140)
T ss_pred CCCCEEEECCCCCEEEHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 99988958899999867997989499999999889996144688999988750477168776289999999999984588
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCC-CCCCHHHHH
Q ss_conf 00000123445899859866665576654442107999889997999976888-578999999
Q gi|254780212|r 88 SITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVT-LKNHAQSVL 149 (157)
Q Consensus 88 ~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~-~~~~~~eil 149 (157)
+||+|+|++++++++||++..... ....+.|++||||++|+|++++.+.. .+++.++++
T Consensus 81 ~f~~l~D~~~~~~~~ygv~~~~~~---~~~~~~r~tfvId~~G~I~~~~i~~~~~~~~~~~~l 140 (140)
T cd02971 81 NFPLLSDPDGEFAKAYGVLIEKSA---GGGLAARATFIIDPDGKIRYVEVEPLPTGRNAEELL 140 (140)
T ss_pred CCEEEECCCHHHHHHCCCCCCCCC---CCCCCCCEEEEECCCCEEEEEEECCCCCCCCHHHHC
T ss_conf 865888686899998399734655---789521089999999989999988999997957709
No 19
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=2.8e-31 Score=213.49 Aligned_cols=139 Identities=25% Similarity=0.432 Sum_probs=124.3
Q ss_pred CCCCCCCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 7777986537307886999788289869985999965113676631126100000000012333322234443-211112
Q gi|254780212|r 2 TSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDS-IASHKK 80 (157)
Q Consensus 2 ~~l~vG~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~-~~~~~~ 80 (157)
.++++|++||+|++++.+|+.+++++++||++||+|| ++|||+|..|++.+++++++|++.|+.+++||.|. ....++
T Consensus 34 ~~~~iG~~aP~f~l~~l~G~~v~lsd~kGK~vll~FW-AtWC~pC~~E~P~L~~l~~~~~~~~v~vi~i~~d~~~~~v~~ 112 (176)
T PRK03147 34 EKMQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETDIAVKN 112 (176)
T ss_pred CCCCCCCCCCCCEEECCCCCEEEHHHHCCCEEEEEEE-CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
T ss_conf 5233799089716278998987189969997999997-897927546715599999985306447852207887888988
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 2221000000001234458998598666655766544421079998899979999768885789999999999
Q gi|254780212|r 81 FHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVK 153 (157)
Q Consensus 81 ~~~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~ 153 (157)
|.++++++||++.|++++++++||+.. .|++|+||++|+|++.+.|.-+..+.+++++.|+
T Consensus 113 f~~~~~~~~pv~~D~~~~~~~~~~v~~------------~P~t~lId~~G~I~~~~~G~i~~~~l~~~i~~lk 173 (176)
T PRK03147 113 FVNQYGLKFPVAIDKGRQVIDAYGVGP------------LPTTFLIDKDGKVVKVITGEMTEEMLEEYLNKIK 173 (176)
T ss_pred HHHHCCCCCEEEECCCCHHHHHCCCCC------------CCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 898709962289879735898769998------------8869999799979999978999999999999874
No 20
>pfam08534 Redoxin Redoxin. This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins.
Probab=99.97 E-value=1.2e-30 Score=209.53 Aligned_cols=137 Identities=28% Similarity=0.398 Sum_probs=121.0
Q ss_pred CCCCCCCEEEEC--CCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 986537307886--999788289869985999965113676631126100000000012333322234443-21111222
Q gi|254780212|r 6 VGDKAPHFVLPS--NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDS-IASHKKFH 82 (157)
Q Consensus 6 vG~~aP~f~l~~--~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~-~~~~~~~~ 82 (157)
.|++||+|+|++ .+|+.++|++++||++||+||+++|||+|+.|++.+++++++|.++|+.+++||.++ ...+++|+
T Consensus 1 ~G~~aP~f~l~~~~~dg~~~~l~~~~Gk~vvl~f~~~~wCp~C~~e~~~l~~~~~~~~~~~~~iv~I~~~~~~~~~~~~~ 80 (142)
T pfam08534 1 AGDKAPDFTLPDVALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKGVDVVAVNASNDPFFVMNFW 80 (142)
T ss_pred CCCCCCCEECCCCCCCCCEECHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHH
T ss_conf 90999471812757899697199989996999997898892645635656677887416533899883376078899999
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC--CCCHHHHH
Q ss_conf 21000000001234458998598666655766544421079998899979999768885--78999999
Q gi|254780212|r 83 QKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTL--KNHAQSVL 149 (157)
Q Consensus 83 ~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~--~~~~~eil 149 (157)
++++++||+++|++++++++||+.... ....|++||||++|+|++++.+..+ .++++++|
T Consensus 81 ~~~~~~fp~l~D~~~~~~~~~gv~~~~-------~~~~p~~~lId~~G~I~~~~~g~~~~~~~~~~~~l 142 (142)
T pfam08534 81 AKEGLKYPVLADGDGAFTKAYGLTEDA-------GLRTPRYFLIDEDGKVVYLEVGPDPGDVSDAEAVL 142 (142)
T ss_pred HHHCCCCEEEECCCHHHHHHCCCCCCC-------CCEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHC
T ss_conf 986997079986964999982997446-------63076899992799799999779988885869869
No 21
>pfam00578 AhpC-TSA AhpC/TSA family. This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA).
Probab=99.96 E-value=1.3e-30 Score=209.40 Aligned_cols=124 Identities=45% Similarity=0.694 Sum_probs=116.8
Q ss_pred CCCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98653730788699978828986998599996511367663112610000000001233332223444321111222210
Q gi|254780212|r 6 VGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKH 85 (157)
Q Consensus 6 vG~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~ 85 (157)
+|++||+|+++|.+|+.++|++++||++||+||++.|||+|..|++++++++++|+++|+++++||.|+++.+++|.+++
T Consensus 1 iG~~aP~f~l~d~~G~~~~l~~~~gk~~vl~f~~~~wC~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 80 (124)
T pfam00578 1 VGDKAPDFELPDLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLGVEVLGVSVDSPESHKKFAEKL 80 (124)
T ss_pred CCCCCCCCEEECCCCCEEEHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 97899861879899699849998999199999889999272999999987443231358746678589999999999985
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 00000001234458998598666655766544421079998899979999
Q gi|254780212|r 86 NLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI 135 (157)
Q Consensus 86 ~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~ 135 (157)
+++||+++|++++++++|||+.... ....|++||||++|+|+|+
T Consensus 81 ~~~~~~l~D~~~~~~~~~gv~~~~~------~~~~P~~~lID~~G~I~yi 124 (124)
T pfam00578 81 GLPFPLLSDPDGEVARAYGVLNEEA------GGALRTTFVIDPDGKIRYI 124 (124)
T ss_pred CCCCEEEEECCCHHHHHCCCCCCCC------CCEEEEEEEECCCCEEEEC
T ss_conf 9994799959749999859984667------9882489999899979879
No 22
>KOG0854 consensus
Probab=99.96 E-value=5.2e-29 Score=199.54 Aligned_cols=156 Identities=27% Similarity=0.363 Sum_probs=139.6
Q ss_pred CCCCCCCCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97777986537307886999788289869985999965113676631126100000000012333322234443211112
Q gi|254780212|r 1 MTSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKK 80 (157)
Q Consensus 1 M~~l~vG~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~ 80 (157)
|..|++|+.+|+|+..++.|+.--..-+.+.|.|||.+|++|||+|++|+..++++.++|.++|+.++|+|+|+.++++.
T Consensus 3 ~~~l~lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~ 82 (224)
T KOG0854 3 GPRLRLGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKD 82 (224)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCHHHHHCCCEEEEEEHHHHHHHHH
T ss_conf 87310267578751224326245535306605897417666775105777788863726664586578865316777889
Q ss_pred CCCC---------CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEE-EECCCCCCCCHHHHHH
Q ss_conf 2221---------00000000123445899859866665576654442107999889997999-9768885789999999
Q gi|254780212|r 81 FHQK---------HNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQ-IWKPVTLKNHAQSVLK 150 (157)
Q Consensus 81 ~~~~---------~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~-~~~~~~~~~~~~eil~ 150 (157)
|.+. +.++|||++|++++++-.|++..+.+....+.....|++|||||+.+|+. +.|+.++++|++|||+
T Consensus 83 Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dEiLR 162 (224)
T KOG0854 83 WIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDEILR 162 (224)
T ss_pred HHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHCCCCHHHCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHH
T ss_conf 99999998742677789875458715465653456976748877883678999978876179999713556768899999
Q ss_pred HHHHHH
Q ss_conf 999850
Q gi|254780212|r 151 MVKSLK 156 (157)
Q Consensus 151 ~i~~L~ 156 (157)
+|++||
T Consensus 163 vidsLq 168 (224)
T KOG0854 163 VIDSLQ 168 (224)
T ss_pred HHHHHH
T ss_conf 998875
No 23
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.95 E-value=7.4e-28 Score=192.47 Aligned_cols=130 Identities=21% Similarity=0.296 Sum_probs=116.0
Q ss_pred CCCCEEEECCCCCEEEHHHHCC-CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5373078869997882898699-859999651136766311261000000000123333222344432111122221000
Q gi|254780212|r 9 KAPHFVLPSNDEQEISLLALGG-SKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNL 87 (157)
Q Consensus 9 ~aP~f~l~~~~g~~~~l~~l~g-k~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~ 87 (157)
.||+|+|++.+|+.++|+++.+ +++||+|||+.|||+|..|+.+|++.+++|+++|+++++||.|+++.+++|.+++++
T Consensus 1 ~APdf~L~~~~G~~v~l~~~~~~~~vvl~F~R~~~Cp~C~~~l~~l~~~~~~~~~~gv~vvaIs~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CCCCEEEECCCCCEEECHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCC
T ss_conf 99970857899898976798099979999977899942147198999889999876965999927999999999986599
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCC-----------------CCCCCCCCCCEEEEEECCCCEEEEEECC
Q ss_conf 00000123445899859866665-----------------5766544421079998899979999768
Q gi|254780212|r 88 SITLLADESKEVLKSYDVWKEKS-----------------MFGKKYMGVVRTTFLIDEKGIIAQIWKP 138 (157)
Q Consensus 88 ~fpil~D~~~~~~~~~gv~~~~~-----------------~~~~~~~~~~r~tfiid~~G~I~~~~~~ 138 (157)
+||+++|++++++++||+..... ....+.....|++||||++|+|++.|++
T Consensus 81 ~f~vl~D~~~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~fvi~~~g~I~~~h~~ 148 (149)
T cd02970 81 PFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred CCEEEECCCHHHHHHCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEC
T ss_conf 83699849779999869558763666467887354335678989876746779999999989999817
No 24
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.95 E-value=1.3e-27 Score=191.05 Aligned_cols=136 Identities=23% Similarity=0.346 Sum_probs=113.0
Q ss_pred CCCCCCEEEECCCCCEEEHHHHC-CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCC
Q ss_conf 86537307886999788289869-9859999651136766311261000000000123333222344--------43211
Q gi|254780212|r 7 GDKAPHFVLPSNDEQEISLLALG-GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISP--------DSIAS 77 (157)
Q Consensus 7 G~~aP~f~l~~~~g~~~~l~~l~-gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~--------d~~~~ 77 (157)
|++||+|+|++++|+.++|++++ ||++||+|| ++|||.|..+++.+++++.+|.+.|+++++||. |+++.
T Consensus 1 G~~APdF~L~d~~G~~~~Lsd~~~~k~vvl~F~-~~~CP~c~~~~p~l~~l~~~~~~~gv~~lgVn~~~~~~~~~ds~~~ 79 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPEN 79 (171)
T ss_pred CCCCCCCEEECCCCCEEEHHHHCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHH
T ss_conf 989976271379989986899779998999995-8999178888876556776763478289999668744375569999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEC--CC--CCCCC--HHHHHHH
Q ss_conf 112222100000000123445899859866665576654442107999889997999976--88--85789--9999999
Q gi|254780212|r 78 HKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWK--PV--TLKNH--AQSVLKM 151 (157)
Q Consensus 78 ~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~--~~--~~~~~--~~eil~~ 151 (157)
+++|+++++++||+|.|++++++++||+.. .|.+||||++|+|+|.-. .. ..+.. -..+..+
T Consensus 80 ~~~~~~~~~~~fPvL~D~~g~va~~yg~~~------------tP~~fvID~~G~i~YrG~idd~~~~~~~~~~~~~l~~A 147 (171)
T cd02969 80 MKAKAKEHGYPFPYLLDETQEVAKAYGAAC------------TPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAA 147 (171)
T ss_pred HHHHHHHHCCCCEEEEECCCHHHHHCCCCC------------CCEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf 999998702371799958974999749964------------88079988999899868625778788998887999999
Q ss_pred HHHH
Q ss_conf 9985
Q gi|254780212|r 152 VKSL 155 (157)
Q Consensus 152 i~~L 155 (157)
|++|
T Consensus 148 i~~~ 151 (171)
T cd02969 148 LDAL 151 (171)
T ss_pred HHHH
T ss_conf 9999
No 25
>KOG0852 consensus
Probab=99.94 E-value=3.7e-27 Score=188.19 Aligned_cols=150 Identities=33% Similarity=0.509 Sum_probs=135.4
Q ss_pred CCCCCCCCCCCCEE---EECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97777986537307---886999788289869985999965113676631126100000000012333322234443211
Q gi|254780212|r 1 MTSLSVGDKAPHFV---LPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIAS 77 (157)
Q Consensus 1 M~~l~vG~~aP~f~---l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~ 77 (157)
|+++.+..++|+|. +.+..-++++|++|+||++|++|||.+||.+|++|+.+|.+.+++|++.|++|+++|+|+.++
T Consensus 1 ~~~~~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fs 80 (196)
T KOG0852 1 NMMEVVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFS 80 (196)
T ss_pred CCCCCCCCCCCCCCEEEEECCCCEEEEEHHHCCCEEEEEECCCCEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf 97444578888763258976800177500105638999855874104775466456565788886297599986332433
Q ss_pred CCCCCC----CCCC---CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE-ECCCCCCCCHHHHH
Q ss_conf 112222----1000---000001234458998598666655766544421079998899979999-76888578999999
Q gi|254780212|r 78 HKKFHQ----KHNL---SITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVL 149 (157)
Q Consensus 78 ~~~~~~----~~~~---~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~-~~~~~~~~~~~eil 149 (157)
+.+|+. +.|+ ++|++||.++++++.|||+.++++. ..|..||||++|++|++ .+..+++++++|+|
T Consensus 81 hlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~------~lRglfIId~~gi~R~it~NDlpvgRSVdE~l 154 (196)
T KOG0852 81 HLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGI------ALRGLFIIDPDGILRQITINDLPVGRSVDETL 154 (196)
T ss_pred HHHHHCCCHHHCCCCCCCCCEEECCCHHHHHHCCCEECCCCC------CEEEEEEECCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 466765854438967656633316324567761846347884------12116898466515776532567773389999
Q ss_pred HHHHHHH
Q ss_conf 9999850
Q gi|254780212|r 150 KMVKSLK 156 (157)
Q Consensus 150 ~~i~~L~ 156 (157)
+.|++.|
T Consensus 155 RLvqAfQ 161 (196)
T KOG0852 155 RLVQAFQ 161 (196)
T ss_pred HHHHHHH
T ss_conf 9998873
No 26
>KOG0855 consensus
Probab=99.94 E-value=8.3e-27 Score=186.02 Aligned_cols=147 Identities=33% Similarity=0.557 Sum_probs=130.6
Q ss_pred CCCCCCCCCCEEEECCCCCEEEHHHHCCC-EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77798653730788699978828986998-59999651136766311261000000000123333222344432111122
Q gi|254780212|r 3 SLSVGDKAPHFVLPSNDEQEISLLALGGS-KIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKF 81 (157)
Q Consensus 3 ~l~vG~~aP~f~l~~~~g~~~~l~~l~gk-~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~ 81 (157)
.+++||.+|||+|+|.||+.++|.++.|+ ++|+||||++.||+|++|.+.|++.|++|++.+.+|+|+|.|+..++++|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF 141 (211)
T KOG0855 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAF 141 (211)
T ss_pred EEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCHHHHHHH
T ss_conf 24327747872212679986560232378727999821678998531124420248988635855886325736777876
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCCCCCCHHHHHHHHHH
Q ss_conf 2210000000012344589985986666557665444210799988999799997-688857899999999998
Q gi|254780212|r 82 HQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 82 ~~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~-~~~~~~~~~~eil~~i~~ 154 (157)
..++++||.+|||+.+++.+.+|+.... ++ ....|++||.++.|....++ ..+.+..++++.++.|++
T Consensus 142 ~sKqnlPYhLLSDpk~e~ik~lGa~k~p--~g---g~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~~ 210 (211)
T KOG0855 142 ASKQNLPYHLLSDPKNEVIKDLGAPKDP--FG---GLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLKA 210 (211)
T ss_pred HHHCCCCEEEECCCCHHHHHHHCCCCCC--CC---CCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHC
T ss_conf 4122587054207421278871898888--78---853414799956973799872354751008889888752
No 27
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.90 E-value=1.6e-24 Score=171.96 Aligned_cols=117 Identities=23% Similarity=0.275 Sum_probs=103.2
Q ss_pred CCCCCEEEECCCCC--EEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 65373078869997--882898699859999651136766311261000000000123333222344-432111122221
Q gi|254780212|r 8 DKAPHFVLPSNDEQ--EISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISP-DSIASHKKFHQK 84 (157)
Q Consensus 8 ~~aP~f~l~~~~g~--~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~-d~~~~~~~~~~~ 84 (157)
++||+|++++.+|+ .+++++++||++||+|| ++||++|..|++.++++++ +.++++++||. |+++..++|.++
T Consensus 1 kpAP~f~l~~ldG~~~~ls~~d~kGk~vvl~FW-AtWC~pC~~e~P~l~~l~~---~~~~~vv~v~~~d~~~~~~~~~~~ 76 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALAR---QGRVPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCCEECCCCCCCCEEECHHHHCCCEEEEEEE-CCCCHHHHHHCCHHHHHHH---CCCEEEEEEECCCCHHHHHHHHHH
T ss_conf 989962711778995285699929998999999-8958668886810788842---583589986347899999999998
Q ss_pred CCCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 00000-000123445899859866665576654442107999889997999976888
Q gi|254780212|r 85 HNLSI-TLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVT 140 (157)
Q Consensus 85 ~~~~f-pil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~ 140 (157)
++++| +++.|++++++++||+.. .|++||||++|+|++.+.|.-
T Consensus 77 ~~~~~~~~~~D~~~~~~~~~~v~~------------~Ptt~liD~~G~I~~~~~G~i 121 (127)
T cd03010 77 HGNPYAAVGFDPDGRVGIDLGVYG------------VPETFLIDGDGIIRYKHVGPL 121 (127)
T ss_pred HCCCCCEEEECCCCCHHHHCCCCC------------CCCEEEEECCCEEEEEEECCC
T ss_conf 399864477558863223078554------------781999919997999998489
No 28
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.89 E-value=1.7e-23 Score=165.68 Aligned_cols=114 Identities=29% Similarity=0.475 Sum_probs=105.3
Q ss_pred CEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf 30788699978828986998599996511367663112610000000001233332223444--3211112222100000
Q gi|254780212|r 12 HFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPD--SIASHKKFHQKHNLSI 89 (157)
Q Consensus 12 ~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d--~~~~~~~~~~~~~~~f 89 (157)
+|++++.+|+.+++++++||++||+|| ++|||.|..+++.++++++++...|+++++||.| +.+..++|.++++++|
T Consensus 1 df~l~d~~G~~~~l~~~~gk~~vl~f~-a~wC~~C~~~~~~l~~~~~~~~~~~v~vi~i~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITF 79 (116)
T ss_pred CCCEECCCCCEEEHHHHCCCEEEEEEE-CCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCE
T ss_conf 921587992998599979995999999-2789975453642023301344564138999788788899999887439833
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECC
Q ss_conf 0001234458998598666655766544421079998899979999768
Q gi|254780212|r 90 TLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKP 138 (157)
Q Consensus 90 pil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~ 138 (157)
|++.|++++++++|++. ..|++||||++|+|++.+.|
T Consensus 80 p~~~D~~~~~~~~~~v~------------~~P~~~iid~~G~i~~~~~G 116 (116)
T cd02966 80 PVLLDPDGELAKAYGVR------------GLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred EEEECCCCHHHHHCCCC------------CCCEEEEECCCCEEEEEEEC
T ss_conf 89986985289984998------------04579999999999999979
No 29
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.88 E-value=1.5e-23 Score=166.02 Aligned_cols=116 Identities=17% Similarity=0.307 Sum_probs=103.8
Q ss_pred CCEEEECC---CCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCC
Q ss_conf 73078869---9978828986998599996511367663112610000000001233332223444------32111122
Q gi|254780212|r 11 PHFVLPSN---DEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPD------SIASHKKF 81 (157)
Q Consensus 11 P~f~l~~~---~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d------~~~~~~~~ 81 (157)
|||+-.+. .|++++|++|+||+|||.|| ++||+.|..|++.+++++++|++.|+.+|+|+.+ +.+..++|
T Consensus 1 p~~~~~~~wlN~~~~vsL~~~kGK~Vll~FW-atwC~pC~~e~P~l~~l~~~~~~~gv~vigV~~~~~~~e~~~~~~~~~ 79 (126)
T cd03012 1 PEFEGILQWLNTDKPLSLAQLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSA 79 (126)
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf 9888767412699837589949998999872-241937887729999999970658817999844544430259999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCC
Q ss_conf 2210000000012344589985986666557665444210799988999799997688
Q gi|254780212|r 82 HQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPV 139 (157)
Q Consensus 82 ~~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~ 139 (157)
.++++++||++.|++..++++|++.. .|++||||++|+|++.+.|.
T Consensus 80 ~~~~~i~~pv~~D~~~~~~~~~~v~~------------~Pt~~lID~~G~i~~~~~Ge 125 (126)
T cd03012 80 VLRYGITYPVANDNDYATWRAYGNQY------------WPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred HHHHCCCCEEEECCCHHHHHHCCCCC------------CCEEEEECCCCCEEEEEECC
T ss_conf 99859974289858178898579982------------38799998998299999578
No 30
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.88 E-value=6.9e-23 Score=161.97 Aligned_cols=112 Identities=20% Similarity=0.369 Sum_probs=96.9
Q ss_pred CCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf 7307886999788289869985999965113676631126100000000012333322234--44321111222210000
Q gi|254780212|r 11 PHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGIS--PDSIASHKKFHQKHNLS 88 (157)
Q Consensus 11 P~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is--~d~~~~~~~~~~~~~~~ 88 (157)
|+|+|++.+|+.++|++++||++||+|| ++|||+|..|++.++++++++ .+++|+ .++.+++++|.++++++
T Consensus 1 P~ftl~~ldG~~~~l~~~~Gk~vvl~FW-AtWC~pC~~e~P~l~~l~~~~-----~~v~v~~~~~~~~~v~~f~~~~~~~ 74 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAADY-----PVVSVALRSGDDGAVARFMQKKGYG 74 (123)
T ss_pred CCEEEECCCCCEEEHHHHCCCEEEEEEE-CCCCCCHHHHCHHHHHHHHHC-----CEEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 9617577998998489969998999999-387813656383388887338-----7887886038688888776511887
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 00001234458998598666655766544421079998899979999768885
Q gi|254780212|r 89 ITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTL 141 (157)
Q Consensus 89 fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~ 141 (157)
||++.|++++++++||+.. .|++||||++|+| +.+.|...
T Consensus 75 fp~~~D~~~~~~~~y~v~~------------~Pt~~liD~~GiV-~~~~G~~~ 114 (123)
T cd03011 75 FPVINDPDGVISARWGVSV------------TPAIVIVDPGGIV-FVTTGVTS 114 (123)
T ss_pred CEEEECCCCCHHHHCCCCC------------CCEEEEEECCCEE-EEEECCCC
T ss_conf 3289889976265479771------------6779999199989-99975799
No 31
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.86 E-value=1.1e-21 Score=154.71 Aligned_cols=143 Identities=22% Similarity=0.315 Sum_probs=117.6
Q ss_pred CCCCCCCEEEEC---CCCCEEEHHH-HCCCEEEEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 986537307886---9997882898-6998599996511367663112-6100000000012333-32223444321111
Q gi|254780212|r 6 VGDKAPHFVLPS---NDEQEISLLA-LGGSKIVLYFYPKDDTSGCTAE-AINFSSLKADFDEEST-ILIGISPDSIASHK 79 (157)
Q Consensus 6 vG~~aP~f~l~~---~~g~~~~l~~-l~gk~vvl~f~~~~~tp~C~~e-~~~l~~~~~~~~~~gv-~vv~is~d~~~~~~ 79 (157)
+||++|+++|.. .+.+.+++++ ++||++||+++||+|||+|+.+ ++.+.+.+++|+++|+ ++++||+|++..++
T Consensus 1 vGd~iP~~~l~~~~~~~~~~~~l~d~f~~kkvvl~~vPgAFTp~Cs~~HlP~~i~~~~~~~~kGvd~I~~isvnD~fv~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCCCCCCEEEEECCCCCEEEEHHHHHCCCEEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHCCCCEEEEEEECCHHHHH
T ss_conf 98878871899762999768878998499819999824667886534658547776999997699689999809999999
Q ss_pred CCCCCCCCC--CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCC----CCHHHHHH
Q ss_conf 222210000--000012344589985986666557665444210799988999799997688857----89999999
Q gi|254780212|r 80 KFHQKHNLS--ITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLK----NHAQSVLK 150 (157)
Q Consensus 80 ~~~~~~~~~--fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~----~~~~eil~ 150 (157)
+|.+.++.+ +++|+|++++++++||+.......+. .....|..+||+ ||+|.+.+....++ ..++.+|+
T Consensus 81 AW~~~~~~~~~i~~lsD~~~~f~~~lGl~~d~~~~g~-g~Rs~R~a~iv~-dg~I~~~~vE~~~~~~~vS~ae~iLk 155 (155)
T cd03013 81 AWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGG-GIRSKRYALIVD-DGKVKYLFVEEDPGDVEVSSAENVLK 155 (155)
T ss_pred HHHHHHCCCCCEEEEECCCHHHHHHHCCEECCCCCCC-CCCCEEEEEEEE-CCEEEEEEEECCCCCCEEECHHHHHC
T ss_conf 9999609877359954674799997298062567878-002100899999-99899999827999765568789519
No 32
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.83 E-value=3e-21 Score=151.96 Aligned_cols=109 Identities=24% Similarity=0.353 Sum_probs=96.2
Q ss_pred CCEEEECCCCCEEEHHHHC-CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 7307886999788289869-9859999651136766311261000000000123333222344432111122221000-0
Q gi|254780212|r 11 PHFVLPSNDEQEISLLALG-GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNL-S 88 (157)
Q Consensus 11 P~f~l~~~~g~~~~l~~l~-gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~-~ 88 (157)
|+|+|++.+|++++|++++ ||+++|+|| +.|||+|..|++.+++.+.+.. ..+.++++|.++.+++++|.+++++ .
T Consensus 1 P~f~l~~ldG~~v~L~~~~~gk~vll~Fw-atwCP~Ck~emP~l~~~~~~~~-~~~~vv~~sdg~~~~~~~f~~~~~l~~ 78 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEA-DWLDVVLASDGEKAEHQRFLKKHGLEA 78 (114)
T ss_pred CCCEEECCCCCEEEECCCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 95374538998698055369984999997-8988678777778999999717-867999997899799999999759877
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 00001234458998598666655766544421079998899979999
Q gi|254780212|r 89 ITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI 135 (157)
Q Consensus 89 fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~ 135 (157)
||.+.|. ++.++|+|-. .|++|+||++|+|+..
T Consensus 79 ~p~~~~~--e~~~ay~V~~------------lP~~~liD~~G~I~~k 111 (114)
T cd02967 79 FPYVLSA--ELGMAYQVSK------------LPYAVLLDEAGVIAAK 111 (114)
T ss_pred CCEEECH--HHHHHCCCCC------------EEEEEEECCCCEEEEC
T ss_conf 8798137--7875444551------------4359999899839955
No 33
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.79 E-value=1.1e-19 Score=142.42 Aligned_cols=109 Identities=19% Similarity=0.339 Sum_probs=88.0
Q ss_pred CEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC-CCCCCCCCCCCC-C
Q ss_conf 30788699978828986998599996511367663112610000000001233--3322234443-211112222100-0
Q gi|254780212|r 12 HFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES--TILIGISPDS-IASHKKFHQKHN-L 87 (157)
Q Consensus 12 ~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~g--v~vv~is~d~-~~~~~~~~~~~~-~ 87 (157)
||.| +.||+.++|++++||+++|+|| ++|||+|..|++.|.++|++|++++ +++++||.|. .+..++|.++.. +
T Consensus 1 ~f~l-~~dG~~v~Lsd~kGK~vll~FW-ATWC~PC~~e~P~L~~ly~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~ 78 (131)
T cd03009 1 DFLL-RNDGGKVPVSSLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWL 78 (131)
T ss_pred CEEE-CCCCCEEEHHHCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCE
T ss_conf 9038-8999798899947988999998-7578666526589999999986138877999985587779999999857611
Q ss_pred CCCCHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 000001-23445899859866665576654442107999889997999
Q gi|254780212|r 88 SITLLA-DESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQ 134 (157)
Q Consensus 88 ~fpil~-D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~ 134 (157)
.+|+.. +...++++.|||.. .|++||||++|+|+.
T Consensus 79 ~~p~~~~~~~~~l~~~y~v~g------------iPt~~lId~~G~IV~ 114 (131)
T cd03009 79 AVPFSDRERRSRLNRTFKIEG------------IPTLIILDADGEVVT 114 (131)
T ss_pred EEECCCCCHHHHHHHHCCCCC------------CCEEEEECCCCCEEH
T ss_conf 011255106789999769887------------784899999997981
No 34
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.2e-19 Score=140.52 Aligned_cols=129 Identities=27% Similarity=0.416 Sum_probs=114.7
Q ss_pred CCCCCCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77798653730788699978828986998599996511367663112610000000001233332223444321111222
Q gi|254780212|r 3 SLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFH 82 (157)
Q Consensus 3 ~l~vG~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~ 82 (157)
.+++||++|+|++.+.+.+.++++++.||..||..+|+-.||+|..|...|++...++. ++.++.||.|.|+++++||
T Consensus 17 ~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~DLPFAq~RfC 94 (158)
T COG2077 17 EPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMDLPFAQKRFC 94 (158)
T ss_pred CCCCCCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCC--CCEEEEEECCCHHHHHHHH
T ss_conf 77668868754897574101022335885699998258987344688999999984259--9279999678965876366
Q ss_pred CCCCCC-CCCHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf 210000-0000123-44589985986666557665444210799988999799997
Q gi|254780212|r 83 QKHNLS-ITLLADE-SKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIW 136 (157)
Q Consensus 83 ~~~~~~-fpil~D~-~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~ 136 (157)
..+|++ ...+||. ++++.++||+...... ......|++|++|.+|+|.|.-
T Consensus 95 ~aeGi~nv~~lSd~r~~~Fge~yGv~I~egp---L~gLlARaV~V~De~g~V~y~e 147 (158)
T COG2077 95 GAEGIENVITLSDFRDRAFGENYGVLINEGP---LAGLLARAVFVLDENGKVTYSE 147 (158)
T ss_pred HHCCCCCCEEHHHHHHHHHHHHHCEEECCCC---CCCEEEEEEEEECCCCCEEEEE
T ss_conf 6528665167155302456575277852564---2470356999983899399987
No 35
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.74 E-value=1.7e-18 Score=134.99 Aligned_cols=105 Identities=17% Similarity=0.250 Sum_probs=83.8
Q ss_pred CCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC-CCCCCCCCCCCCC--CCCCH
Q ss_conf 99978828986998599996511367663112610000000001233--3322234443-2111122221000--00000
Q gi|254780212|r 18 NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES--TILIGISPDS-IASHKKFHQKHNL--SITLL 92 (157)
Q Consensus 18 ~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~g--v~vv~is~d~-~~~~~~~~~~~~~--~fpil 92 (157)
..|+.++|++|+||+++|+|| ++|||+|..|++.|.+++++|++.| +++++||.|. .+..++|.++++- ..|.-
T Consensus 5 ~~~~~v~ls~lkGK~vll~FW-AsWC~pCr~e~P~L~~ly~~~~~~~~~~~vi~is~D~~~~~~~~~~~~~~~~~~lp~~ 83 (132)
T cd02964 5 DGEGVVPVSALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFE 83 (132)
T ss_pred CCCCEEEHHHHCCCEEEEEEE-CCCCHHHHHHCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 699898899908988999998-4568204310589999999987418868999976789999999999964985034136
Q ss_pred H-HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 1-234458998598666655766544421079998899979999
Q gi|254780212|r 93 A-DESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI 135 (157)
Q Consensus 93 ~-D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~ 135 (157)
. +.+..+++.|+|.. .|++||||++|+|+..
T Consensus 84 ~~~~~~~l~~~y~V~g------------iPt~~lid~~Gkiv~~ 115 (132)
T cd02964 84 DEELRELLEKQFKVEG------------IPTLVVLKPDGDVVTT 115 (132)
T ss_pred CHHHHHHHHHHCCCCC------------CCEEEEECCCCCEECH
T ss_conf 7788899999738888------------9878999899989703
No 36
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.71 E-value=1.8e-17 Score=128.78 Aligned_cols=129 Identities=19% Similarity=0.305 Sum_probs=101.9
Q ss_pred CCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCC---CCCCCCCCCC----CCCCCCC
Q ss_conf 5373078869997882898699859999651136766-311261000000000123---3332223444----3211112
Q gi|254780212|r 9 KAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSG-CTAEAINFSSLKADFDEE---STILIGISPD----SIASHKK 80 (157)
Q Consensus 9 ~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~-C~~e~~~l~~~~~~~~~~---gv~vv~is~d----~~~~~~~ 80 (157)
.+|+|+|.|++|+.+++++++||++||+|. .++||. |+..+..|+++++++.+. +++++.||+| +++.+++
T Consensus 1 ~~p~f~L~d~~G~~~~~~~~~gk~~lv~F~-yt~Cp~~Cp~~~~~l~~~~~~l~~~~~~~v~~v~ISvDP~rDtpe~L~~ 79 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKA 79 (142)
T ss_pred CCCCEEEECCCCCEEEHHHHCCCEEEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHH
T ss_conf 979869991998998279979988999987-4679993489999999999986443258579999990888899999999
Q ss_pred CCCCCCCCCCCHHHHH---HHHHHHCCCCCCCCCCCCCCCCC-C-EEEEEECCCCEEEEEECC
Q ss_conf 2221000000001234---45899859866665576654442-1-079998899979999768
Q gi|254780212|r 81 FHQKHNLSITLLADES---KEVLKSYDVWKEKSMFGKKYMGV-V-RTTFLIDEKGIIAQIWKP 138 (157)
Q Consensus 81 ~~~~~~~~fpil~D~~---~~~~~~~gv~~~~~~~~~~~~~~-~-r~tfiid~~G~I~~~~~~ 138 (157)
|++.++-+|..|.... .+++++||+.............. + ..+|||||+|+|+..+++
T Consensus 80 y~~~~~~~w~~Ltg~~~~i~~l~~~~gv~~~~~~~~~~~~~~~Hs~~~~lid~~G~i~~~~~g 142 (142)
T cd02968 80 YAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHHCCCCEEEECCHHHHHHHHHHCCEEEEECCCCCCCCEEECCCEEEEECCCCCEEEEECC
T ss_conf 999736584699899999999999769589976788888788730389999799859999479
No 37
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily; InterPro: IPR004799 Periplasmic protein thiol:disulphide oxidoreductase is involved in the biogenesis of c-type cytochromes as well as in disulphide bond formation in some periplasmic proteins. This group defines the DsbE subfamily.; GO: 0015036 disulfide oxidoreductase activity, 0017004 cytochrome complex assembly, 0030288 outer membrane-bounded periplasmic space.
Probab=99.67 E-value=2.8e-17 Score=127.53 Aligned_cols=128 Identities=22% Similarity=0.263 Sum_probs=107.4
Q ss_pred CCCCCCCCEEEECCCCCEEEHH-H--HCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC-CCCCCCC
Q ss_conf 7986537307886999788289-8--6998599996511367663112610000000001233-33222344-4321111
Q gi|254780212|r 5 SVGDKAPHFVLPSNDEQEISLL-A--LGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES-TILIGISP-DSIASHK 79 (157)
Q Consensus 5 ~vG~~aP~f~l~~~~g~~~~l~-~--l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~g-v~vv~is~-d~~~~~~ 79 (157)
-+|+++|.|...+..++.-..+ + -+|++++|+|| ++|||+|+.|-+-|+++ .+.| +.||||.. |+.+..-
T Consensus 36 LigkpvP~~~~a~L~~~~q~~~~~~~~qG~~~LlNVW-AsWCp~CraEHp~L~eL----ak~Grl~ivG~dYKD~~~~Al 110 (175)
T TIGR00385 36 LIGKPVPAFGLAALREPLQLYTADIFRQGKPVLLNVW-ASWCPPCRAEHPYLNEL----AKEGRLPIVGVDYKDQSQNAL 110 (175)
T ss_pred HCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEEEEEEE-ECCCCCCHHCCHHHHHH----HHCCCCEEEEEECCCCCHHHH
T ss_conf 1388988511220246786136445308960699884-03688831000578999----753973078863478845788
Q ss_pred CCCCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 22221000000-00123445899859866665576654442107999889997999976888578999999
Q gi|254780212|r 80 KFHQKHNLSIT-LLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVL 149 (157)
Q Consensus 80 ~~~~~~~~~fp-il~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil 149 (157)
+|..++|-||. ++.|++++++=.+||+. .|=|||||.+|+|+|.|.|.-.....++.+
T Consensus 111 ~~LkelGNPy~~~~~D~~G~~glDlGV~G------------aPETflvdg~G~I~YRhaG~l~~~~w~~~l 169 (175)
T TIGR00385 111 KFLKELGNPYQLILADPKGKLGLDLGVYG------------APETFLVDGNGVILYRHAGPLNKEVWTEEL 169 (175)
T ss_pred HHHHHCCCCEEEEEECCCCCEEEECCCCC------------CCCCEEECCCCEEEEEECCCCCCHHHHHHC
T ss_conf 88764489066888789984653226688------------985478679865877743788601122212
No 38
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.6e-15 Score=114.58 Aligned_cols=148 Identities=18% Similarity=0.335 Sum_probs=117.1
Q ss_pred CCCCCCCCCCCEEEECC------CC-CEEEHHH-HCCCEEEEEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf 77779865373078869------99-7882898-699859999651136766311-261000000000123333-22234
Q gi|254780212|r 2 TSLSVGDKAPHFVLPSN------DE-QEISLLA-LGGSKIVLYFYPKDDTSGCTA-EAINFSSLKADFDEESTI-LIGIS 71 (157)
Q Consensus 2 ~~l~vG~~aP~f~l~~~------~g-~~~~l~~-l~gk~vvl~f~~~~~tp~C~~-e~~~l~~~~~~~~~~gv~-vv~is 71 (157)
|++++|++.|..++... +| ..++..+ ++||.+||+-.||+|||.|.. +++.+.+++++|+++|+. ++.||
T Consensus 1 m~~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVS 80 (165)
T COG0678 1 MTIMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVS 80 (165)
T ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 95545880773076776414467776212288852898799994887658876602284678879999974996699999
Q ss_pred CCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCC----CCH
Q ss_conf 4432111122221000--0000012344589985986666557665444210799988999799997688857----899
Q gi|254780212|r 72 PDSIASHKKFHQKHNL--SITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLK----NHA 145 (157)
Q Consensus 72 ~d~~~~~~~~~~~~~~--~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~----~~~ 145 (157)
+++++.+++|++..+. +..+++|.++++.++.|+.......+-+ ...-|...|| +||+|.+.+...+.. .++
T Consensus 81 VND~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G-~RS~RYsmvV-~nGvV~~~~iE~p~~~~~vS~a 158 (165)
T COG0678 81 VNDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFG-VRSWRYSMVV-ENGVVEKLFIEPPGDPFTVSSA 158 (165)
T ss_pred ECCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHCCCEEECCCCCCC-EEEEEEEEEE-ECCEEEEEEECCCCCCEEECCH
T ss_conf 5829988788875388866799417981454533735631567754-3120477888-5786899986389995100489
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780212|r 146 QSVLKM 151 (157)
Q Consensus 146 ~eil~~ 151 (157)
+.+|+.
T Consensus 159 ~~mL~~ 164 (165)
T COG0678 159 DTMLAQ 164 (165)
T ss_pred HHHHHC
T ss_conf 999750
No 39
>pfam02630 SCO1-SenC SCO1/SenC. This family is involved in biogenesis of respiratory and photosynthetic systems. SCO1 is required for a post-translational step in the accumulation of subunits COXI and COXII of cytochrome c oxidase. SenC is required for optimal cytochrome c oxidase activity and maximal induction of genes encoding the light-harvesting and reaction centre complexes of R. capsulatus.
Probab=99.57 E-value=4.9e-15 Score=113.80 Aligned_cols=126 Identities=21% Similarity=0.310 Sum_probs=96.2
Q ss_pred CCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCC--CCCCCCCCCC----CCCCCCCCCC
Q ss_conf 73078869997882898699859999651136766-311261000000000123--3332223444----3211112222
Q gi|254780212|r 11 PHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSG-CTAEAINFSSLKADFDEE--STILIGISPD----SIASHKKFHQ 83 (157)
Q Consensus 11 P~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~-C~~e~~~l~~~~~~~~~~--gv~vv~is~d----~~~~~~~~~~ 83 (157)
=+|+|.|++|+.+++++|+||++|++|. .+.||. |+..+..|+++++++.+. .++++.||+| +|+.+++|.+
T Consensus 18 g~F~L~dq~G~~~t~~~l~Gk~~lv~Fg-fT~CpdiCP~~~~~l~~~~~~l~~~~~~v~~v~iTvDPerDTpe~L~~Y~~ 96 (159)
T pfam02630 18 GPFTLIDQNGKNFTSENLKGKLSLIYFG-FTNCPDICPPALDRLTDIIKKLKAENIDVQPVFISVDPERDTPKVLKEYLK 96 (159)
T ss_pred CCEEEEECCCCEECHHHHCCCEEEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 9828982899997679959988999998-889996458999999999998530477559999996248899999999999
Q ss_pred CCCCCCCCHH---HHHHHHHHHCCCCCCCCCCC---CCCCCCCE-EEEEECCCCEEEEEEC
Q ss_conf 1000000001---23445899859866665576---65444210-7999889997999976
Q gi|254780212|r 84 KHNLSITLLA---DESKEVLKSYDVWKEKSMFG---KKYMGVVR-TTFLIDEKGIIAQIWK 137 (157)
Q Consensus 84 ~~~~~fpil~---D~~~~~~~~~gv~~~~~~~~---~~~~~~~r-~tfiid~~G~I~~~~~ 137 (157)
.++.+|.-+. +.-.+++++|+++....... ..+...+. .+|||||+|+|+..|.
T Consensus 97 ~f~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~y~v~Hs~~~~LiD~~G~i~~~y~ 157 (159)
T pfam02630 97 NFHPSFIGLTGTTDEIKSVAKKFKVFYSKVIVDKPEQDYLVDHSSFFYLIDPDGKILKHYN 157 (159)
T ss_pred HCCCCCCEEECCHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCEEEEECCCCCEEEECC
T ss_conf 7299855348999999999997186089646568998854755777999969998974517
No 40
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.52 E-value=6.6e-14 Score=106.83 Aligned_cols=141 Identities=19% Similarity=0.279 Sum_probs=102.4
Q ss_pred CEEEECCCCCEEEHHHHCCCEEEEEEEECCCCC-CCCCCCCCCCCCCCCCC---CCCCCCCCCCCCC----CCCCCCCCC
Q ss_conf 307886999788289869985999965113676-63112610000000001---2333322234443----211112222
Q gi|254780212|r 12 HFVLPSNDEQEISLLALGGSKIVLYFYPKDDTS-GCTAEAINFSSLKADFD---EESTILIGISPDS----IASHKKFHQ 83 (157)
Q Consensus 12 ~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp-~C~~e~~~l~~~~~~~~---~~gv~vv~is~d~----~~~~~~~~~ 83 (157)
+|+|.+++|+++++.+++|++++|+|- .+.|| +|+.++..+.++++++. ..+++++.||+|+ ++.+++|.+
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~Fg-yT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFG-YTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CEEEECCCCCEEECCCCCCCEEEEEEE-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHC
T ss_conf 657886899886123567988999975-5678974757999999999973643478489999987999998999999732
Q ss_pred -CCCCCCCCHH---HHHHHHHHHCCCCCCCCCCC--CCCCCCCEE-EEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf -1000000001---23445899859866665576--654442107-9998899979999768885789999999999850
Q gi|254780212|r 84 -KHNLSITLLA---DESKEVLKSYDVWKEKSMFG--KKYMGVVRT-TFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLK 156 (157)
Q Consensus 84 -~~~~~fpil~---D~~~~~~~~~gv~~~~~~~~--~~~~~~~r~-tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L~ 156 (157)
..+-.|..+. +...+++++|+|+..+-... ..+...+.+ .|+||++|+++..+..... .+++++.|+.|-
T Consensus 128 ~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~---~~~i~~~l~~l~ 204 (207)
T COG1999 128 LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEP---PEEIAADLKKLL 204 (207)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHCEEEEEECCCCCCCCEEECCEEEEEECCCCEEEEEECCCCC---HHHHHHHHHHHH
T ss_conf 16888862650898899999996161456512477776224144069998899829998458998---699999999986
No 41
>KOG0541 consensus
Probab=99.43 E-value=1.8e-13 Score=104.17 Aligned_cols=149 Identities=19% Similarity=0.254 Sum_probs=111.8
Q ss_pred CCCCCCCCCCCC--EEEE---C--CCCCEEEHHHH-CCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 977779865373--0788---6--99978828986-998599996511367663-11261000000000123333-2223
Q gi|254780212|r 1 MTSLSVGDKAPH--FVLP---S--NDEQEISLLAL-GGSKIVLYFYPKDDTSGC-TAEAINFSSLKADFDEESTI-LIGI 70 (157)
Q Consensus 1 M~~l~vG~~aP~--f~l~---~--~~g~~~~l~~l-~gk~vvl~f~~~~~tp~C-~~e~~~l~~~~~~~~~~gv~-vv~i 70 (157)
|..+.+||..|+ .++- . ..+.+++++++ +||++||+-.||+|||.| ..+++.+....++|+++|+. ++.+
T Consensus 6 ~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~sHvPGyi~~a~elksKGvd~Iicv 85 (171)
T KOG0541 6 MAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICV 85 (171)
T ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 36302467466663100116831013424776784078649998488764885410128368877888875688679999
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCC----CC
Q ss_conf 444321111222210000--000012344589985986666557665444210799988999799997688857----89
Q gi|254780212|r 71 SPDSIASHKKFHQKHNLS--ITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLK----NH 144 (157)
Q Consensus 71 s~d~~~~~~~~~~~~~~~--fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~----~~ 144 (157)
|+|+|+.+++|.+.++.+ .-+++|++++..+.+|+..+.... ......-|...++ .||+|.++....... ..
T Consensus 86 SVnDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~-~~g~RS~R~a~vv-engkV~~~nvE~~g~~~t~ss 163 (171)
T KOG0541 86 SVNDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDK-LLGVRSRRYALVV-ENGKVTVVNVEEGGTDFTVSS 163 (171)
T ss_pred ECCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCEEEECCC-CCCCCCCCEEEEE-ECCEEEEEEECCCCCCEEEEC
T ss_conf 63868998888752576655899865887531004614540225-6740124078998-388699999436886157751
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780212|r 145 AQSVLKM 151 (157)
Q Consensus 145 ~~eil~~ 151 (157)
++.||+.
T Consensus 164 ae~il~~ 170 (171)
T KOG0541 164 AEDILKQ 170 (171)
T ss_pred HHHHHHC
T ss_conf 7878432
No 42
>KOG2792 consensus
Probab=99.42 E-value=1.7e-13 Score=104.25 Aligned_cols=150 Identities=21% Similarity=0.309 Sum_probs=102.8
Q ss_pred CCCCC--CCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCC-CC--CCCCCCCCC----C
Q ss_conf 98653--73078869997882898699859999651136766-311261000000000123-33--322234443----2
Q gi|254780212|r 6 VGDKA--PHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSG-CTAEAINFSSLKADFDEE-ST--ILIGISPDS----I 75 (157)
Q Consensus 6 vG~~a--P~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~-C~~e~~~l~~~~~~~~~~-gv--~vv~is~d~----~ 75 (157)
+|.++ =+|+|.|++|+.++-.+|+|||++|+|= .++||- |+.|+..|.+..+++++. |+ ..+.||+|+ +
T Consensus 113 ~gk~~iGGpF~L~d~~Gk~~te~df~Gkw~LiYFG-FThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~ 191 (280)
T KOG2792 113 AGKPAIGGPFSLVDHDGKRVTEKDFLGKWSLIYFG-FTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSV 191 (280)
T ss_pred CCCCCCCCCEEEEECCCCEECCCCCCCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCH
T ss_conf 17774279647772589761030234516999952-56899769699999999999985258998622599847664879
Q ss_pred CCCCCCCCCCCCCC---CCHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCE-EEEEECCCCEEEEEE-CCCCCCCCHHHH
Q ss_conf 11112222100000---000123445899859866665--57665444210-799988999799997-688857899999
Q gi|254780212|r 76 ASHKKFHQKHNLSI---TLLADESKEVLKSYDVWKEKS--MFGKKYMGVVR-TTFLIDEKGIIAQIW-KPVTLKNHAQSV 148 (157)
Q Consensus 76 ~~~~~~~~~~~~~f---pil~D~~~~~~~~~gv~~~~~--~~~~~~~~~~r-~tfiid~~G~I~~~~-~~~~~~~~~~ei 148 (157)
+.+++|.++++-.. +=-.+.-..++++|.||.... ..+.+|..-+- ..|+|||+|.++..+ .+.+.+.-.+.|
T Consensus 192 ~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I 271 (280)
T KOG2792 192 EVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSI 271 (280)
T ss_pred HHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHEEEECCCCCCCCCCEEEEEEEEEEEECCCCCEEHHHCCCCCHHHHHHHH
T ss_conf 99999998508665056688999999998807861468987788856541589999889863006534668888999999
Q ss_pred HHHHHHHH
Q ss_conf 99999850
Q gi|254780212|r 149 LKMVKSLK 156 (157)
Q Consensus 149 l~~i~~L~ 156 (157)
++.+.+-+
T Consensus 272 ~~~v~~y~ 279 (280)
T KOG2792 272 LKHVASYR 279 (280)
T ss_pred HHHHHHCC
T ss_conf 99988316
No 43
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.41 E-value=1.3e-12 Score=98.90 Aligned_cols=145 Identities=15% Similarity=0.224 Sum_probs=101.3
Q ss_pred CCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCC
Q ss_conf 8653730788699978828986998599996511367663112610000000001233332223444--------32111
Q gi|254780212|r 7 GDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPD--------SIASH 78 (157)
Q Consensus 7 G~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d--------~~~~~ 78 (157)
.+.+=||++.+.+|++++|++|+|+.+||+.-.++.|+....+..+|++++++|+++|.+|+|+-.+ +.+++
T Consensus 17 ~ks~ydf~~~~i~G~~~~L~~y~Gk~vlivVNvAS~CG~T~q~Y~~L~~L~~~y~~~Gl~IL~FPcNqF~~QEpg~~~eI 96 (183)
T PTZ00256 17 TKSFFDFELNDIDGQKTQLSKFQGKKAYICVNVACSCGLTSSNYSELVELYKQYSAQGLEILGFPCNQFMNQESKPEPEI 96 (183)
T ss_pred CCCEEEEEEECCCCCEEEHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHH
T ss_conf 76556216445998995289959987999998156778983618999999999850898899866644255699988999
Q ss_pred CCCCC-CCCCCCCCHH--HHH----HHHHHHCCCCCCCCCC-CCC---CCCCCEEEEEECCCCEEEEEECCCCCCCCHHH
Q ss_conf 12222-1000000001--234----4589985986666557-665---44421079998899979999768885789999
Q gi|254780212|r 79 KKFHQ-KHNLSITLLA--DES----KEVLKSYDVWKEKSMF-GKK---YMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQS 147 (157)
Q Consensus 79 ~~~~~-~~~~~fpil~--D~~----~~~~~~~gv~~~~~~~-~~~---~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~e 147 (157)
++|+. ++++.||+.. |.+ +.+.+-+.- ...... ... .....=+-||||++|+++..|.+.. .+++
T Consensus 97 ~~f~~~~ygv~Fp~f~Ki~VnG~~~hPly~~LK~-~~~~~~~~~~~~~~I~WNF~KFLId~~G~vv~rf~p~t---~P~~ 172 (183)
T PTZ00256 97 KEFVIQKYGVSFPLFQKIEVNGQNTHEIYRYLRL-NSELLKVNKNEAKEVPWNFGKFLLDSQGNVVNFYCPDQ---KPNE 172 (183)
T ss_pred HHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHH-CCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCC---CHHH
T ss_conf 9999857898536667673579987868999985-36555567567997786657799999982998979899---9999
Q ss_pred HHHHHHHH
Q ss_conf 99999985
Q gi|254780212|r 148 VLKMVKSL 155 (157)
Q Consensus 148 il~~i~~L 155 (157)
+.+.|++|
T Consensus 173 l~~~Ie~l 180 (183)
T PTZ00256 173 MMQDIEKL 180 (183)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 44
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.40 E-value=9.7e-13 Score=99.68 Aligned_cols=144 Identities=14% Similarity=0.275 Sum_probs=101.6
Q ss_pred CCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCC
Q ss_conf 8653730788699978828986998599996511367663112610000000001233332223444--------32111
Q gi|254780212|r 7 GDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPD--------SIASH 78 (157)
Q Consensus 7 G~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d--------~~~~~ 78 (157)
-+.+=||++.+.+|+.++|++++||.++|+-. ++-|+....+...|++++++|.++|++|+|+..+ +.+++
T Consensus 16 ~ksiYdf~~~~idG~~~~l~~ykGkv~LIVNv-AS~CG~T~q~y~~L~~L~~~y~~~gl~ILaFPcnqF~~QE~~~~~eI 94 (180)
T PTZ00056 16 SKSIYDYTVKTLEGNPVPMSSLKNKVLMITNS-ASKCGLTKSHVKQMNRLHSVFNPRGLEILAFPTSQFLGQEFENTKDI 94 (180)
T ss_pred HHCEECEEEECCCCCEECHHHCCCCEEEEEEE-CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCCHHHH
T ss_conf 30651207546998993489949988999981-57778866679999999998622897899987801057899978999
Q ss_pred CCCCCCCCCCCCCHH--HHH----HHHHHHCCCCCCCCCCCC----CCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHH
Q ss_conf 122221000000001--234----458998598666655766----5444210799988999799997688857899999
Q gi|254780212|r 79 KKFHQKHNLSITLLA--DES----KEVLKSYDVWKEKSMFGK----KYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSV 148 (157)
Q Consensus 79 ~~~~~~~~~~fpil~--D~~----~~~~~~~gv~~~~~~~~~----~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~ei 148 (157)
++|+++++++||+.. |.+ +.+.+-+.- ..+...+. ......=+-||||++|+++..|.+.. ++.++
T Consensus 95 ~~f~~~~~v~Fpvf~Ki~VnG~~ahPlyk~Lk~-~~~~~~~~~g~~~~I~WNF~KFLId~~G~vv~rf~p~~---~P~~l 170 (180)
T PTZ00056 95 RKFNEKNKIKYNLFSPIEVNGPNTHELFKKLKR-NCDSMHDENGTLSAIGWNFGKFLVDKNGKVVAYFSPRT---NPLDL 170 (180)
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHH-HCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCC---CHHHH
T ss_conf 999850498754024785259988889999986-08776665676687775307999989997998889999---98999
Q ss_pred HHHHHHH
Q ss_conf 9999985
Q gi|254780212|r 149 LKMVKSL 155 (157)
Q Consensus 149 l~~i~~L 155 (157)
.+.|++|
T Consensus 171 ~~~Ie~L 177 (180)
T PTZ00056 171 EKKIAEL 177 (180)
T ss_pred HHHHHHH
T ss_conf 9999998
No 45
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.38 E-value=1.8e-12 Score=97.98 Aligned_cols=145 Identities=12% Similarity=0.240 Sum_probs=100.8
Q ss_pred CCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCC
Q ss_conf 653730788699978828986998599996511367663112610000000001233332223444--------321111
Q gi|254780212|r 8 DKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPD--------SIASHK 79 (157)
Q Consensus 8 ~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d--------~~~~~~ 79 (157)
+.+=||++.+.+|++++|++|+||.+||+-. ++.| +.+.|...|++++++|+++|++|+|+-.+ +.++++
T Consensus 3 ~siydf~~~~idG~~~~l~~y~GKvvLIVNv-AS~C-G~T~qY~~L~~L~~~y~~~Gl~ILgFPcNqF~~QEp~~~~eI~ 80 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNV-ASKC-GLTPQYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIK 80 (183)
T ss_pred CCEECEEEECCCCCEECHHHCCCCEEEEEEC-CCCC-CCCHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHCCCCCHHHHH
T ss_conf 7512207776899893489939968999977-7557-8807799999999984118838997420666651999889999
Q ss_pred CCCC-CCCCCCCCHH--HH----HHHHHHHCCCCCC-------CCCC------CCCC-----CCCCEEEEEECCCCEEEE
Q ss_conf 2222-1000000001--23----4458998598666-------6557------6654-----442107999889997999
Q gi|254780212|r 80 KFHQ-KHNLSITLLA--DE----SKEVLKSYDVWKE-------KSMF------GKKY-----MGVVRTTFLIDEKGIIAQ 134 (157)
Q Consensus 80 ~~~~-~~~~~fpil~--D~----~~~~~~~~gv~~~-------~~~~------~~~~-----~~~~r~tfiid~~G~I~~ 134 (157)
+|++ +++++|||.+ +. .+-+.+-+--..+ .++. +... ....=+-||||++|+++.
T Consensus 81 ~fc~~~ygv~Fp~f~Ki~VnG~~~hPlyk~L~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~I~WNF~KFLId~dG~vv~ 160 (183)
T PRK10606 81 TYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQ 160 (183)
T ss_pred HHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCEEE
T ss_conf 99986799851016788605998780699998648665565433201100002457676785530007999989998998
Q ss_pred EECCCCCCCCHHHHHHHHHHH
Q ss_conf 976888578999999999985
Q gi|254780212|r 135 IWKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 135 ~~~~~~~~~~~~eil~~i~~L 155 (157)
.|.+. +.+.-+++++.|+++
T Consensus 161 rf~p~-t~P~~~~i~~~Ie~~ 180 (183)
T PRK10606 161 RFSPD-MTPEDPIVMESIKLA 180 (183)
T ss_pred EECCC-CCCCCHHHHHHHHHH
T ss_conf 88999-999978999999998
No 46
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.27 E-value=1e-11 Score=93.40 Aligned_cols=135 Identities=18% Similarity=0.288 Sum_probs=93.8
Q ss_pred CCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCC
Q ss_conf 3730788699978828986998599996511367663112610000000001233332223444--------32111122
Q gi|254780212|r 10 APHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPD--------SIASHKKF 81 (157)
Q Consensus 10 aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d--------~~~~~~~~ 81 (157)
+-+|++.+.+|+.++|++++||+++|+.. +++|. .+.|...|++++++|+++|++|+|+..+ +.+++++|
T Consensus 2 ~yd~~~~~idG~~~~l~~y~GkvvLiVNv-AS~Cg-~t~qy~~L~~L~~ky~~~gl~Il~fPcnqFg~QEp~~~~eI~~f 79 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred CCCEEEECCCCCEECHHHCCCCEEEEEEC-CCCCC-CCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCHHHHHHH
T ss_conf 11137667998994589939978999966-77888-87248899999998412884999636688613499978999999
Q ss_pred CCC-CCCCCCCHH--HHH----HHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf 221-000000001--234----4589985986666557665444210799988999799997688857899999999
Q gi|254780212|r 82 HQK-HNLSITLLA--DES----KEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKM 151 (157)
Q Consensus 82 ~~~-~~~~fpil~--D~~----~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~ 151 (157)
++. ++.+|||.. |.+ +.+.+-+.-. .....+ ......=+-||||++|+++..|.+.. +++++.+.
T Consensus 80 ~~~~y~v~Fpv~~K~~VnG~~~hply~~Lk~~-~~~~~~-~~i~WNF~KfLid~~G~vv~rf~~~~---~p~~l~~~ 151 (152)
T cd00340 80 CETNYGVTFPMFAKIDVNGENAHPLYKYLKEE-APGLLG-KDIKWNFTKFLVDRDGEVVKRFAPTT---DPEELEKD 151 (152)
T ss_pred HHHCCCCCCCEEEEEECCCCCCCHHHHHHHHH-CCCCCC-CCCCCCCEEEEECCCCCEEEEECCCC---CHHHHHHC
T ss_conf 99706876222766506798768899999975-798878-98762138999989998998879999---98999602
No 47
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=7e-12 Score=94.42 Aligned_cols=141 Identities=17% Similarity=0.264 Sum_probs=97.9
Q ss_pred CCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCC
Q ss_conf 53730788699978828986998599996511367663112610000000001233332223444--------3211112
Q gi|254780212|r 9 KAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPD--------SIASHKK 80 (157)
Q Consensus 9 ~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d--------~~~~~~~ 80 (157)
.+=+|++.+.+|++++|++++||.++|+-. ++-|. -+.|...|..+|++|+++|++|+++-.+ +.+++++
T Consensus 4 ~~yd~~~~~~~G~~~~l~~y~GkVlLIVNt-ASkCG-fTpQYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 4 SIYDFSVKDIDGEPVSLSDYKGKVLLIVNT-ASKCG-FTPQYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred CCCCCEEECCCCCCCCHHHHCCCEEEEEEC-CCCCC-CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 624651353689882489929968999974-54468-8675899999999986489689931452105579898799999
Q ss_pred CCC-CCCCCCCCHH--HHHHH----HHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 222-1000000001--23445----8998598666655766544421079998899979999768885789999999999
Q gi|254780212|r 81 FHQ-KHNLSITLLA--DESKE----VLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVK 153 (157)
Q Consensus 81 ~~~-~~~~~fpil~--D~~~~----~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~ 153 (157)
||. ++|..|||++ |.+++ +.+-+-- ......+.......-+-|+||++|.|+..+.+...+ +++...|+
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~-~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P---~d~~~~Ie 157 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKE-QKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKP---EDIELAIE 157 (162)
T ss_pred HHHHCCCCEEEEEEEEEECCCCCCCHHHHHHH-CCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCH---HHHHHHHH
T ss_conf 98755696455146776269987807999984-278776687643013788786999689850899982---16999999
Q ss_pred HH
Q ss_conf 85
Q gi|254780212|r 154 SL 155 (157)
Q Consensus 154 ~L 155 (157)
+|
T Consensus 158 ~l 159 (162)
T COG0386 158 KL 159 (162)
T ss_pred HH
T ss_conf 98
No 48
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD; InterPro: IPR013478 MauD appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulphide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulphide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded .; GO: 0030416 methylamine metabolic process.
Probab=99.07 E-value=6.7e-11 Score=88.40 Aligned_cols=128 Identities=23% Similarity=0.386 Sum_probs=96.9
Q ss_pred CCCCCCCCEEEECCCCCEEEHHH--HCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79865373078869997882898--6998599996511367663112610000000001233332223444321111222
Q gi|254780212|r 5 SVGDKAPHFVLPSNDEQEISLLA--LGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFH 82 (157)
Q Consensus 5 ~vG~~aP~f~l~~~~g~~~~l~~--l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~ 82 (157)
.|||.+|.|++++.+|+.|.... -.|++.+|-|- +-.||+|.+=++-++... +.+ ++.||-||-..+++|++|.
T Consensus 47 DvG~~aP~F~l~~f~G~~V~iG~~~a~~R~~LLMFT-aPsCPvC~KL~PiIkSia-~~E--~~~Vv~ISDG~~~EHr~FL 122 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGSIALGRPTLLMFT-APSCPVCDKLLPIIKSIA-RAE--EIDVVLISDGTPEEHRRFL 122 (189)
T ss_pred CCCCCCCEECCCCCCCCEEEECCCCCCCCCEEEEEC-CCCCCHHHHHHHHHHHHH-HHH--CCCEEEEECCCCHHHHHHH
T ss_conf 745558710576667864561175567775035443-888853224327898888-672--5325897279927999886
Q ss_pred CCCCCC---CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCC-CCCCCHHHHHHHHHH
Q ss_conf 210000---000012344589985986666557665444210799988999799997688-857899999999998
Q gi|254780212|r 83 QKHNLS---ITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPV-TLKNHAQSVLKMVKS 154 (157)
Q Consensus 83 ~~~~~~---fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~-~~~~~~~eil~~i~~ 154 (157)
++|.+. |-+ | .|+.=+|-| +=.|+-.++|++|+|+.. |. +++.|.|-++++.++
T Consensus 123 ~~H~L~~~~YVV-S---AE~GM~fQV------------~KiPYGVLLD~~G~I~AK--GL~NTREHlESLlEa~r~ 180 (189)
T TIGR02661 123 KDHELGEERYVV-S---AEIGMAFQV------------GKIPYGVLLDQDGVIRAK--GLTNTREHLESLLEADRE 180 (189)
T ss_pred HCCCCCCEEEEE-E---ECCCCCCCC------------CCCCCEEEECCCCEEEEC--CCCCHHHHHHHHHHHCCC
T ss_conf 428888713788-6---202210011------------225622566799747742--676438889998862003
No 49
>KOG1651 consensus
Probab=98.95 E-value=1.1e-09 Score=80.90 Aligned_cols=137 Identities=13% Similarity=0.182 Sum_probs=94.0
Q ss_pred CCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCC
Q ss_conf 8653730788699978828986998599996511367663112610000000001233332223444--------32111
Q gi|254780212|r 7 GDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPD--------SIASH 78 (157)
Q Consensus 7 G~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d--------~~~~~ 78 (157)
-..+-+|+..+.+|+.++|+.|+||.++|+-. ++.|..-..+..+|+.++++|++.|.++++.-.+ +.+++
T Consensus 11 ~~siydf~~~d~~G~~v~l~~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei 89 (171)
T KOG1651 11 KGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEI 89 (171)
T ss_pred HCCEEEEEEECCCCCCCCHHHHCCEEEEEEEC-CCCCCCCHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHH
T ss_conf 15645247861889780678918739999971-00105651011668999999864882999852543367699872888
Q ss_pred CCCC-CCCCCCCCCHH--HHHHH----HHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHH
Q ss_conf 1222-21000000001--23445----899859866665576654442107999889997999976888578999
Q gi|254780212|r 79 KKFH-QKHNLSITLLA--DESKE----VLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQ 146 (157)
Q Consensus 79 ~~~~-~~~~~~fpil~--D~~~~----~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~ 146 (157)
..|+ .+++..|||.. |.++. +.+-+. -......+. .....-+-|+||++|.|+..|.+.....+++
T Consensus 90 ~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK-~~~~~~lg~-~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~ 162 (171)
T KOG1651 90 LNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLK-KVKGGPLGD-DIKWNFTKFLVDKDGHVVKRFSPTTSPLDIE 162 (171)
T ss_pred HHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHH-HCCCCCCCC-CCEEEEEEEEECCCCCEEEEECCCCCCCCCC
T ss_conf 988874568998427688627988756899986-557973466-2034017885889993887338989864300
No 50
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.86 E-value=2.5e-09 Score=78.79 Aligned_cols=97 Identities=13% Similarity=0.191 Sum_probs=73.4
Q ss_pred HHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCC-CCCCCCCCCCCCCCC---CCHH
Q ss_conf 8986998599996511367663112610000000001-------2333322234443-211112222100000---0001
Q gi|254780212|r 25 LLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFD-------EESTILIGISPDS-IASHKKFHQKHNLSI---TLLA 93 (157)
Q Consensus 25 l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~-------~~gv~vv~is~d~-~~~~~~~~~~~~~~f---pil~ 93 (157)
.++|.||.+.|+|- ++|||+|+.=++.|.+.|.+++ ..++++|-||.|. .++..+|..+..-+| |.-.
T Consensus 20 vs~L~GKvVgLYFS-A~WCpPCr~FTP~L~~fY~~l~~~~~~~~~~~fEIVfVS~Drse~~f~~y~~~MP~~WlAlPf~d 98 (146)
T cd03008 20 VARLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFED 98 (146)
T ss_pred HHHCCCCEEEEEEE-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEECCCCC
T ss_conf 99818999999974-78681487677899999999987654403787799998368999999999997798726657696
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 23445899859866665576654442107999889997999
Q gi|254780212|r 94 DESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQ 134 (157)
Q Consensus 94 D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~ 134 (157)
....++.+.|+|-. +|+..||+++|.|+.
T Consensus 99 ~~~~~L~~~f~V~g------------IPtLVil~~dG~vit 127 (146)
T cd03008 99 EFRRELEAQFSVEE------------LPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHHHHHHCCCCC------------CCEEEEECCCCCEEC
T ss_conf 89999999859987------------888999989998973
No 51
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.79 E-value=8.6e-09 Score=75.44 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=70.8
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
.||++++.|| ++||+.|....+.+.++.++|.++ +.++.+++|+.. | ...++.|||-+
T Consensus 19 ngKPvlVdFy-A~WC~~Ck~maP~le~l~~~Y~dk-v~fv~vNVDn~~----w---------------~~~~~~y~V~g- 76 (142)
T cd02950 19 NGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDNPK----W---------------LPEIDRYRVDG- 76 (142)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCC----C---------------HHHHHHHCCCC-
T ss_conf 7997899998-998977887738999999995892-149999788870----5---------------67999819788-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 65576654442107999889997999976888578999999999
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMV 152 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i 152 (157)
.|+..++|.+|..+-.+.|..+....++.++++
T Consensus 77 -----------iPt~~~fd~~G~~~~~~iG~~pe~~l~~~l~aL 109 (142)
T cd02950 77 -----------IPHFVFLDREGNEEGQSIGLQPKQVLAQNLDAL 109 (142)
T ss_pred -----------CCEEEEECCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf -----------876999868996910353769889999999999
No 52
>KOG2501 consensus
Probab=98.62 E-value=3.6e-08 Score=71.60 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=85.3
Q ss_pred EEEECCCCCEEEHH-HHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 07886999788289-86998599996511367663112610000000001233--3322234443-21111222210000
Q gi|254780212|r 13 FVLPSNDEQEISLL-ALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES--TILIGISPDS-IASHKKFHQKHNLS 88 (157)
Q Consensus 13 f~l~~~~g~~~~l~-~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~g--v~vv~is~d~-~~~~~~~~~~~~~~ 88 (157)
..|...+|..+-.+ .|.||.+.++|- +.|||.|+.=.+.+.+.|++.++.+ ++||-||.|. .+++.+|...++.+
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~ 93 (157)
T KOG2501 15 NRLRKQDGTEVLASEALQGKVVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGD 93 (157)
T ss_pred CEEECCCCCCCHHHHHHCCCEEEEEEE-EEECCCHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 741036874243768627868999988-7877835648866899999997368966999995688778999999963998
Q ss_pred CCCH---HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 0000---123445899859866665576654442107999889997999
Q gi|254780212|r 89 ITLL---ADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQ 134 (157)
Q Consensus 89 fpil---~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~ 134 (157)
+..+ .|...++.+.|+|-. .|+..+|+++|+++.
T Consensus 94 W~~iPf~d~~~~~l~~ky~v~~------------iP~l~i~~~dG~~v~ 130 (157)
T KOG2501 94 WLAIPFGDDLIQKLSEKYEVKG------------IPALVILKPDGTVVT 130 (157)
T ss_pred EEEECCCCHHHHHHHHHCCCCC------------CCEEEEECCCCCEEH
T ss_conf 6884289879998787616676------------753678659987865
No 53
>pfam00255 GSHPx Glutathione peroxidase.
Probab=98.59 E-value=2.4e-08 Score=72.73 Aligned_cols=80 Identities=11% Similarity=0.256 Sum_probs=67.9
Q ss_pred CEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCC
Q ss_conf 30788699978828986998599996511367663112610000000001233332223444--------3211112222
Q gi|254780212|r 12 HFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPD--------SIASHKKFHQ 83 (157)
Q Consensus 12 ~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d--------~~~~~~~~~~ 83 (157)
+|++.+.+|++++|++++||.++|+-. ++.|. .+.|...|++++++|+++|.+|+|+..+ +.+++++|+.
T Consensus 3 d~~~~d~~G~~~~l~~ykGkv~LIVNv-AS~Cg-~t~qy~~L~~L~~ky~~~gl~IlaFPcnqF~~QEp~~~~eI~~f~~ 80 (108)
T pfam00255 3 DFSAKDINGEPVPLDQYRGKVLLIVNV-ASKCG-LTPQYTELNELQERYKDRGLVILGFPCNQFGKQEPGSNEEIKYFRP 80 (108)
T ss_pred CEEEECCCCCEECHHHCCCCEEEEEEE-CCCCC-CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 037227995994889939988999995-57788-9707999999999723188399986656646679899899999998
Q ss_pred -CCCCCCCCHH
Q ss_conf -1000000001
Q gi|254780212|r 84 -KHNLSITLLA 93 (157)
Q Consensus 84 -~~~~~fpil~ 93 (157)
+++..||+.+
T Consensus 81 ~~y~v~F~~~~ 91 (108)
T pfam00255 81 GGYGVTFPIFS 91 (108)
T ss_pred HCCCCCCEEEE
T ss_conf 64799840476
No 54
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7; InterPro: IPR013376 This model represents one of several families of known and probable glutathione peroxidases. It is restricted to animals and designated GPX7.; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress.
Probab=98.49 E-value=2e-07 Score=67.02 Aligned_cols=136 Identities=11% Similarity=0.188 Sum_probs=92.1
Q ss_pred CCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCC
Q ss_conf 730788699978828986998599996511367663112610000000001233332223444--------321111222
Q gi|254780212|r 11 PHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPD--------SIASHKKFH 82 (157)
Q Consensus 11 P~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d--------~~~~~~~~~ 82 (157)
=+|++.|..|+.|+|+.|+|+..|++-. ++.|.........|+++..+|...-+.|+|.-++ +..++..|+
T Consensus 3 Y~f~v~d~~G~~VsLeKYrG~vsLVVNV-AS~c~~td~~Y~~L~~L~r~lG~~HF~VLAFPCnQfG~~Ep~~~~Eie~fa 81 (153)
T TIGR02540 3 YSFEVKDARGRTVSLEKYRGKVSLVVNV-ASECEFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPGTSREIESFA 81 (153)
T ss_pred CEEEEEECCCCEEEEEEECCEEEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 2046772356366311001107899870-278810057789999988760755634761345324778898514578765
Q ss_pred C-CCCCCCCCHHH-----HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 2-10000000012-----3445899859866665576654442107999889997999976888578999999999985
Q gi|254780212|r 83 Q-KHNLSITLLAD-----ESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 83 ~-~~~~~fpil~D-----~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L 155 (157)
+ .|++.|||.+- ...+-|=.| +.+ ...+.. ...=.-|||+|+|+|+..|.+. ..+++|-..|.+|
T Consensus 82 r~nYgv~FP~F~Ki~i~G~~a~pAf~f--l~~--s~~K~P-~WNFWKyLV~P~G~VV~~W~P~---~~~~~irp~~~~l 152 (153)
T TIGR02540 82 RRNYGVTFPIFSKIKILGSEAEPAFRF--LVD--SSKKEP-RWNFWKYLVDPEGQVVKFWRPE---EPVEEIRPEITSL 152 (153)
T ss_pred HHCCCEECCCCCCEEEECCCCCHHHHH--HHH--HCCCCC-CCCCEEEEECCCCCEEEECCCC---CCHHHHHHHHHHC
T ss_conf 402510135312336752897445554--333--127888-8340347678997085522898---6288864787512
No 55
>pfam05988 DUF899 Bacterial protein of unknown function (DUF899). This family consists of several uncharacterized bacterial proteins of unknown function.
Probab=98.47 E-value=4e-07 Score=65.21 Aligned_cols=130 Identities=15% Similarity=0.279 Sum_probs=96.0
Q ss_pred CCEEEECCCCCEEEHHHH-CCCEEEE-EEEE-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 730788699978828986-9985999-9651-----13676631126100000000012333322234443211112222
Q gi|254780212|r 11 PHFVLPSNDEQEISLLAL-GGSKIVL-YFYP-----KDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQ 83 (157)
Q Consensus 11 P~f~l~~~~g~~~~l~~l-~gk~vvl-~f~~-----~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~ 83 (157)
.+..+...+|+ ++|+|| .|+..|| +.+. ..-||+|+.-+..++-....+..+|+.+++||..+.+++.+|++
T Consensus 47 k~Y~F~gp~G~-v~L~dLF~GR~qLivYhfMf~P~~~~~C~gCS~~~D~~~g~l~hL~~rd~t~a~vsraP~~~l~~~k~ 125 (211)
T pfam05988 47 KDYRFDGPDGP-VTLADLFGGRSQLIVYHFMFGPGWEAGCPGCSFLADHFDGALAHLAARDVALAAVSRAPLAELVAYKR 125 (211)
T ss_pred CCEEEECCCCC-EEHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHCCCEEEEEECCCHHHHHHHHH
T ss_conf 87587689985-32899809974289999702789889999722245275613778872783699993798999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 100000000123445899859866665576654442107999889997999976888578999999
Q gi|254780212|r 84 KHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVL 149 (157)
Q Consensus 84 ~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil 149 (157)
+.|..||..|..+......|+|....+. ..+--++|+-| +|+|.+.|... ++..+.+.
T Consensus 126 rmGW~~pw~Ss~~s~Fn~D~~v~~~~~~-----e~pg~svF~rd-~g~Vfhtyst~--~RG~e~l~ 183 (211)
T pfam05988 126 RMGWTFPWYSSVGSDFNRDFGVSFTEEG-----ERPGLSVFLRD-GGRVFHTYSTY--ARGLEDLM 183 (211)
T ss_pred HCCCCCEEEECCCCCCCCCCCCCCCCCC-----CCCCEEEEEEC-CCEEEEEECCC--CCCCHHHH
T ss_conf 7599714786589766531475217878-----77615899976-99899965258--98730132
No 56
>pfam00837 T4_deiodinase Iodothyronine deiodinase. Iodothyronine deiodinase converts thyroxine (T4) to 3,5,3'-triiodothyronine (T3).
Probab=98.27 E-value=3.2e-06 Score=59.68 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=88.3
Q ss_pred CCCCCCCCCEEEECCCCCE-EEHHHH--CCCEEEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7798653730788699978-828986--99859999651136-7663112610000000001233332223444321111
Q gi|254780212|r 4 LSVGDKAPHFVLPSNDEQE-ISLLAL--GGSKIVLYFYPKDD-TSGCTAEAINFSSLKADFDEESTILIGISPDSIASHK 79 (157)
Q Consensus 4 l~vG~~aP~f~l~~~~g~~-~~l~~l--~gk~vvl~f~~~~~-tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~ 79 (157)
-++|..||+=++...+|++ .++-|+ .++++||+| |+. ||+-...+.+|+++.++|.+. +.++.|-.+-....-
T Consensus 73 a~~G~~APns~vV~l~g~~~~~ildf~~g~RPLVlnF--GScTCPpFm~~l~~F~rlv~~f~dv-ADFl~VYIeEAHpsD 149 (237)
T pfam00837 73 AHLGGLAPNSEVVRLSGQRGCHILDFAQGNRPLVLNF--GSCTUPPFMARLDAFQRLVEDFCST-ADFLIIYIEEAHPSD 149 (237)
T ss_pred HHCCCCCCCCCEEEECCCCCEEHHHHHCCCCCEEEEC--CCCCCCHHHHHHHHHHHHHHHHHHH-HHEEEEEEECCCCCC
T ss_conf 7457889999638545743000666605898758862--6767855888899999999997603-344666531136777
Q ss_pred CCCC------------------------CCCCCCCCHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 2222------------------------100000000123-445899859866665576654442107999889997999
Q gi|254780212|r 80 KFHQ------------------------KHNLSITLLADE-SKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQ 134 (157)
Q Consensus 80 ~~~~------------------------~~~~~fpil~D~-~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~ 134 (157)
.|.- ++.-..|++.|. +.....+||++- .| .||| .+|+|.|
T Consensus 150 GW~~~~n~~~I~~Hr~ledRl~AA~~l~~~~p~cpvvvDtMdN~an~aYgA~p------------eR-LYIi-q~gkV~Y 215 (237)
T pfam00837 150 GWAFTDNSYNIPTHQTLQDRLQAARLLLQRAPGCRVVADTMRNQSSQAYGAYF------------ER-LYVI-QEGKILY 215 (237)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCC------------CE-EEEE-ECCEEEE
T ss_conf 61016984325776787999999999995099998898614676678736673------------44-8999-7487997
Q ss_pred EECCCCCCCCHHHHHHHHHHHH
Q ss_conf 9768885789999999999850
Q gi|254780212|r 135 IWKPVTLKNHAQSVLKMVKSLK 156 (157)
Q Consensus 135 ~~~~~~~~~~~~eil~~i~~L~ 156 (157)
.--..+.+=+++|+.+.+++++
T Consensus 216 ~Gg~GP~~Y~~~Evr~wLeky~ 237 (237)
T pfam00837 216 QGGRGPWGYHPEEVRAWLEKYH 237 (237)
T ss_pred CCCCCCCCCCHHHHHHHHHHHC
T ss_conf 2788988789899999999749
No 57
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.26 E-value=4e-06 Score=59.07 Aligned_cols=89 Identities=10% Similarity=0.112 Sum_probs=66.8
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
..|++||.|| +.||++|..-.+.+.++.++++..++.+.-|+.| .+.+++..|||-.
T Consensus 23 ~~kPvlV~F~-A~WC~pC~~l~P~~~~~a~ele~~~v~~~~Vn~d---------------------~~~~la~~~gV~s- 79 (111)
T cd02963 23 FKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG---------------------HERRLARKLGAHS- 79 (111)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECC---------------------CCHHHHHHCCCCC-
T ss_conf 8973999999-9747878865079999999834575599999488---------------------6989999819986-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 65576654442107999889997999976888578999999999985
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L 155 (157)
.|+++++ .+|++..-..|..+ .+++.+.++.|
T Consensus 80 -----------iPtl~~~-~~G~~v~~~~G~~s---~~~i~~Fi~kl 111 (111)
T cd02963 80 -----------VPAIVGI-INGQVTFYHDSSFT---KQHVVDFVRKL 111 (111)
T ss_pred -----------CCEEEEE-ECCEEEEEECCCCC---HHHHHHHHHHC
T ss_conf -----------8989999-99999886637679---89999999739
No 58
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.21 E-value=2.2e-06 Score=60.63 Aligned_cols=85 Identities=13% Similarity=0.228 Sum_probs=61.9
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
.+|++|+.|| +.||++|..-.+.|.++.++|..+ +.++-|.+ |.+.+++++|||..
T Consensus 12 s~k~VlV~F~-A~wCgpCk~l~P~l~~la~ey~~~-v~f~kvDv---------------------d~~~~la~~~~I~~- 67 (97)
T cd02949 12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDGA-VHFVEIDI---------------------DEDQEIAEAAGIMG- 67 (97)
T ss_pred CCCEEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCC-EEEEEEEC---------------------CCCHHHHHHCCCCC-
T ss_conf 7994999998-999856564269999999983797-19999968---------------------87988999819931-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 65576654442107999889997999976888578999999999
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMV 152 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i 152 (157)
.|++.+. ++|+.+..+.|..+. +++.+.|
T Consensus 68 -----------~PT~~~f-k~g~~v~~~~G~~~~---~~l~~~i 96 (97)
T cd02949 68 -----------TPTVQFF-KDKELVKEISGVKMK---SEYREFI 96 (97)
T ss_pred -----------CCEEEEE-ECCEEEEEEECCCCH---HHHHHHH
T ss_conf -----------7789999-999996888888889---9999975
No 59
>TIGR01068 thioredoxin thioredoxin; InterPro: IPR005746 Thioredoxins , , , are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. TR-S_2 + NADPH + H^+ -> TR-(SH)_2 + NADP^+ (1) trx-S_2 + TR-(SH)_2 -> trx-(SH)_2 + TR-S_2 (2) Protein-S_2 + trx-(SH)_2 -> Protein-(SH)_2 + trx-S_2 (3) In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide (steps 1 and 2). Reduced thioredoxin then directly reduces the disulphide in the substrate protein (step 3) . Protein disulphide isomerase (PDI), a resident foldase of the endoplasmic recticulum, is a multi-functional protein that catalyses the formation and isomerisation of disulphide bonds during protein folding , . PDI contains 2 redox active domains, near the N- and C-termini, that are similar to thioredoxin: both contribute to disulphide isomerase activity, but are functionally non-equivalent . Interestingly, a mutant PDI, with all 4 of the active cysteines replaced by serine, displays a low but detectable level of disulphide isomerase activity . Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity . A number of endoplasmic reticulum proteins that differ from the PDI major isozyme contain 2 (ERp60, ERp5) or 3 (ERp72 ) thioredoxin domains; all of them seem to be PDIs. 3D-structures have been determined for a number of thioredoxins . The molecule has a doubly-wound alternating alpha/beta fold, consisting of a 5-stranded parallel beta-sheet core, enclosed by 4 alpha-helices. The active site disulphide is located at the N-terminus of helix 2 in a short segment that is separated from the rest of the helix by a kink caused by a conserved proline. The 4-membered disulphide ring is located on the surface of the protein. A flat hydrophobic surface lies adjacent to the disulphide, which presumably facilitates interaction with other proteins. One invariant feature of all thioredoxins is a cis-proline located in a loop preceding beta-strand 4. This residue is positioned in van der Waals contact with the active site cysteines and is important both for stability and function . Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase . Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0006662 glycerol ether metabolic process, 0045454 cell redox homeostasis.
Probab=98.11 E-value=5.4e-06 Score=58.29 Aligned_cols=86 Identities=13% Similarity=0.284 Sum_probs=64.8
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 98599996511367663112610000000001233332223444321111222210000000012344589985986666
Q gi|254780212|r 30 GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEK 109 (157)
Q Consensus 30 gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~~ 109 (157)
+++||+-|| +.||++|..=.|-|.++.+++.. +++++=|++| ++.++|.+|||-
T Consensus 14 d~~VlVDFW-A~WCGPCKm~aP~lee~a~e~~~-~v~~~KlnvD---------------------~~~~~A~~ygi~--- 67 (101)
T TIGR01068 14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVD---------------------ENPDIAAKYGIR--- 67 (101)
T ss_pred CCCEEEEEE-CCCCCCCCCHHHHHHHHHHHCCC-CCEEEEEECC---------------------CCCCCHHHCCCC---
T ss_conf 973788743-59998734424688888754169-7468885347---------------------883414452854---
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 557665444210799988999799997688857899999999998
Q gi|254780212|r 110 SMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 110 ~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~ 154 (157)
..||..+. |+|+.+....|+.+. +++.+.|.+
T Consensus 68 ---------SIPTl~lF-K~G~~V~~~vGa~pK---~~l~~~~~~ 99 (101)
T TIGR01068 68 ---------SIPTLLLF-KNGKVVDRSVGALPK---AALKQLINK 99 (101)
T ss_pred ---------CCCEEEEE-CCCEEEEEEECCCCH---HHHHHHHHH
T ss_conf ---------05637775-198252006135697---999999987
No 60
>PRK09381 trxA thioredoxin; Provisional
Probab=98.04 E-value=7.8e-06 Score=57.29 Aligned_cols=87 Identities=11% Similarity=0.225 Sum_probs=62.1
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
.++++||.|| +.||++|....+.+.++.++|... +.++-|.+| .+.++++.|+|-.
T Consensus 20 s~~~vlV~F~-A~wC~pCk~l~P~l~~l~~e~~~~-v~~~~vdvd---------------------~~~~la~~~~V~~- 75 (109)
T PRK09381 20 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQGK-LTVAKLNID---------------------QNPGTAPKYGIRG- 75 (109)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCCC-EEEEEEECC---------------------CCHHHHHHCCCCC-
T ss_conf 8983999998-899975885118999864423787-589996320---------------------1877787527576-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 6557665444210799988999799997688857899999999998
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~ 154 (157)
.|+.+++ ++|+++..+.|... .+++.+.|++
T Consensus 76 -----------vPT~~~f-k~G~~v~~~~G~~~---~~~l~~~i~~ 106 (109)
T PRK09381 76 -----------IPTLLLF-KNGEVAATKVGALS---KGQLKEFLDA 106 (109)
T ss_pred -----------CCEEEEE-ECCEEEEEEECCCC---HHHHHHHHHH
T ss_conf -----------8849999-99989788727999---9999999998
No 61
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.04 E-value=5e-06 Score=58.48 Aligned_cols=85 Identities=12% Similarity=0.237 Sum_probs=60.0
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
+.+++|+.|| +.||+.|..-.+.+.+..+++..+ +.++-|.+ |.+.+++++|||..
T Consensus 11 ~~~PVlv~F~-A~wC~~C~~~~p~l~~~a~~~~~~-~~~~~vd~---------------------d~~~~la~~~~V~~- 66 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQGQ-FVLAKVNC---------------------DAQPQIAQQFGVQA- 66 (96)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHCCCE-EEEEEEEC---------------------CCCHHHHHHCCCCC-
T ss_conf 9980999998-899976899899999999855652-99999803---------------------34654687678761-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 65576654442107999889997999976888578999999999
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMV 152 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i 152 (157)
.|+++++ ++|+.+..+.|..+. +++.+.|
T Consensus 67 -----------~Pt~~~f-~~G~~v~~~~G~~~~---~~l~~~l 95 (96)
T cd02956 67 -----------LPTVYLF-AAGQPVDGFQGAQPE---EQLRQML 95 (96)
T ss_pred -----------CCEEEEE-ECCEEEEEEECCCCH---HHHHHHH
T ss_conf -----------6838889-999994577189999---9999976
No 62
>pfam00085 Thioredoxin Thioredoxin. Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise.
Probab=98.03 E-value=2e-05 Score=54.77 Aligned_cols=87 Identities=15% Similarity=0.301 Sum_probs=60.3
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
.+|+++|.|| +.|||.|....+.+.+..+++.. ++.++.|..| .+.++++.|++.
T Consensus 17 ~~k~vlv~F~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~d---------------------~~~~~~~~~~i~-- 71 (104)
T pfam00085 17 SDKPVLVDFY-APWCGPCKALAPEYEKLAQEYKD-DVKFAKVDAD---------------------ENPDLASEYGVR-- 71 (104)
T ss_pred CCCCEEEEEE-CCCCHHHHHCCHHHHHHCCCCCC-CCCCCCCCCC---------------------CCHHHHHCCCCE--
T ss_conf 8994999998-99985045107044442222211-0122001465---------------------485353247962--
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 6557665444210799988999799997688857899999999998
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~ 154 (157)
..|+.+++ ++|+....+.|. +..+++.+.|++
T Consensus 72 ----------~~Pti~~~-~~G~~v~~~~G~---~~~e~l~~~i~~ 103 (104)
T pfam00085 72 ----------GFPTIKFF-KNGKKVSDYVGA---RTKDDLVAFIKK 103 (104)
T ss_pred ----------ECCEEEEE-ECCEEEEEEECC---CCHHHHHHHHHH
T ss_conf ----------50908999-899598888789---999999999973
No 63
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.01 E-value=4.9e-06 Score=58.51 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=62.2
Q ss_pred HHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 89869985999965113676631126100000000012333322234443211112222100000000123445899859
Q gi|254780212|r 25 LLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYD 104 (157)
Q Consensus 25 l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~g 104 (157)
|++-++|.+|+.|| ++||++|..-.+.+.++..++. ++.++-|..|..++.++ +++.|+
T Consensus 10 l~~a~~kLVVvdF~-A~WCgPCk~i~P~~e~La~~~~--~v~F~kV~~De~~~~~e------------------la~~~~ 68 (103)
T cd02985 10 LKKAKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTME------------------LCRREK 68 (103)
T ss_pred HHHCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHH------------------HHHHCC
T ss_conf 99779988999998-9989777763089999997779--97899997767655799------------------999779
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 866665576654442107999889997999976888578999999
Q gi|254780212|r 105 VWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVL 149 (157)
Q Consensus 105 v~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil 149 (157)
|.. .| ||+.=++|+.+..+.|.+++.-.++||
T Consensus 69 I~s------------~P-TF~f~k~G~~v~~~~GA~~~~L~~~Vl 100 (103)
T cd02985 69 IIE------------VP-HFLFYKDGEKIHEEEGIGPDELIGDVL 100 (103)
T ss_pred CCC------------CC-EEEEEECCEEEEEEECCCHHHHHHHHH
T ss_conf 806------------33-799999998999996889899999887
No 64
>KOG4498 consensus
Probab=98.01 E-value=1.1e-05 Score=56.32 Aligned_cols=138 Identities=19% Similarity=0.230 Sum_probs=101.4
Q ss_pred ECCCCCEEEHHHHC-CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 86999788289869-98599996511367663112610000000001233332223444321111222210000000012
Q gi|254780212|r 16 PSNDEQEISLLALG-GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLAD 94 (157)
Q Consensus 16 ~~~~g~~~~l~~l~-gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D 94 (157)
.+..|+.+...+|. ....|+.|.|.--|-.|+.+...|.++.+-++..|+.+++|-..+......|+++-.+.-.+..|
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~~f~gevylD 114 (197)
T KOG4498 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQTYFSGEVYLD 114 (197)
T ss_pred HHHCCCEEEHHHHHHCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCHHHCCCCCCEEEEEC
T ss_conf 55057542368866407718998525768772788887887888998739779998044102102011146763248985
Q ss_pred HHHHHHHHCCCCCCC-C-----------------CCC--CCCCCCCEEEEEECCCCEEEEEECCCCCCC--CHHHHHHHH
Q ss_conf 344589985986666-5-----------------576--654442107999889997999976888578--999999999
Q gi|254780212|r 95 ESKEVLKSYDVWKEK-S-----------------MFG--KKYMGVVRTTFLIDEKGIIAQIWKPVTLKN--HAQSVLKMV 152 (157)
Q Consensus 95 ~~~~~~~~~gv~~~~-~-----------------~~~--~~~~~~~r~tfiid~~G~I~~~~~~~~~~~--~~~eil~~i 152 (157)
++++..+.++..... . ..+ ++.....+.+++|.+.++|.+++....+++ +.++|++++
T Consensus 115 ~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~gD~~~i~~Vl~v~ 194 (197)
T KOG4498 115 PHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETGDHVPIDSVLQVV 194 (197)
T ss_pred CCCCEECHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 76550203454301233335553788888864355777554757748839995598079998137878776899999986
Q ss_pred H
Q ss_conf 9
Q gi|254780212|r 153 K 153 (157)
Q Consensus 153 ~ 153 (157)
.
T Consensus 195 ~ 195 (197)
T KOG4498 195 G 195 (197)
T ss_pred H
T ss_conf 1
No 65
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.98 E-value=2.2e-05 Score=54.50 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=62.4
Q ss_pred CCEEEEEEEECCCCCCCCCCCC-CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9859999651136766311261-0000--000001233332223444321111222210000000012344589985986
Q gi|254780212|r 30 GSKIVLYFYPKDDTSGCTAEAI-NFSS--LKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVW 106 (157)
Q Consensus 30 gk~vvl~f~~~~~tp~C~~e~~-~l~~--~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~ 106 (157)
+|+++|.|+ ..|||.|..--. -|.+ ..+.++ ..+.++-|..++...+..|-.+ .=...++++.|+|.
T Consensus 14 ~Kpvlv~f~-~~~C~~C~~m~~~~~~~~~v~~~l~-~~f~~v~vd~~~~~~~~~f~g~--------~~~~~~la~~~~v~ 83 (125)
T cd02951 14 KKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDFDGE--------ALSEKELARKYRVR 83 (125)
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHCCCHHHHHHHH-CCCEEEEEECCCCCCCCCCCCC--------CCCHHHHHHHCCCC
T ss_conf 984999997-8989708999998439999999996-1814788761567530034556--------44399999986987
Q ss_pred CCCCCCCCCCCCCCEEEEEECCC-CEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 66655766544421079998899-9799997688857899999999998
Q gi|254780212|r 107 KEKSMFGKKYMGVVRTTFLIDEK-GIIAQIWKPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 107 ~~~~~~~~~~~~~~r~tfiid~~-G~I~~~~~~~~~~~~~~eil~~i~~ 154 (157)
. .|+++++|++ |++.....|.-...++-.+|+.+.+
T Consensus 84 ~------------tPT~~fld~~gg~~i~~~~Gy~~~~~f~~~L~yv~~ 120 (125)
T cd02951 84 F------------TPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred C------------CCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 6------------777999869998677772597899999999999971
No 66
>pfam09695 YtfJ_HI0045 Bacterial protein of unknown function (YtfJ_HI0045). These are sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.96 E-value=2.6e-05 Score=54.06 Aligned_cols=138 Identities=19% Similarity=0.256 Sum_probs=84.0
Q ss_pred CCCCCCCCCEEEECC-----CC-----CEEEHHHHCCCEEEEEEEECCCCCCCCCCCC-CCCC-C-CCCCCCCCCCCCC-
Q ss_conf 779865373078869-----99-----7882898699859999651136766311261-0000-0-0000123333222-
Q gi|254780212|r 4 LSVGDKAPHFVLPSN-----DE-----QEISLLALGGSKIVLYFYPKDDTSGCTAEAI-NFSS-L-KADFDEESTILIG- 69 (157)
Q Consensus 4 l~vG~~aP~f~l~~~-----~g-----~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~-~l~~-~-~~~~~~~gv~vv~- 69 (157)
|++|++.|..++.+. +| +.++.+++.||.-||.-..| .+ -.+|+. .|-+ + .++|...-.+..+
T Consensus 15 ~~~g~~~P~V~v~d~GEl~l~~~~~~y~~W~S~~L~GKVrviq~iAG--r~-sakelN~~l~~Aikaa~fp~~~YqtttI 91 (174)
T pfam09695 15 LQLGQPVPPVTVADKGELVLNGDKFSYQPWSSAQLAGKVRVIQHIAG--RS-SAKELNAPLIEAIKAAKFPRDKYQTTTI 91 (174)
T ss_pred CCCCCCCCCEEECCCCEEEECCCCEEEEECCHHHCCCCEEEEEEECC--CC-CHHHHHHHHHHHHHHHCCCHHHCCEEEE
T ss_conf 53589289558557855987389462212470215886899998336--88-6677738999999970798100420789
Q ss_pred CCCCCC-----CCCCCCCCCCCCCCC---CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 344432-----111122221000000---001234458998598666655766544421079998899979999768885
Q gi|254780212|r 70 ISPDSI-----ASHKKFHQKHNLSIT---LLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTL 141 (157)
Q Consensus 70 is~d~~-----~~~~~~~~~~~~~fp---il~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~ 141 (157)
|+.|+. .-.+.=.++..-.|| +..|.++.+.++++.-.+. -+.+|+|++|+|+++..|.-+
T Consensus 92 IN~ddAiwgtg~fV~ss~e~~Kk~fP~S~~VlD~~G~v~~aW~L~~~s-----------SaIiVlDk~G~V~f~kdG~Lt 160 (174)
T pfam09695 92 INLDDAIWGTGSFVKSSAEDSKKEFPWSQFVLDSNGVVQKAWDLQEES-----------SAIIVLDKQGKVLFVKEGALT 160 (174)
T ss_pred EECCCCEECCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHCCCCCCCC-----------CEEEEECCCCCEEEEECCCCC
T ss_conf 836765322448875567651331887269991787153402689778-----------659999588878998768899
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 78999999999985
Q gi|254780212|r 142 KNHAQSVLKMVKSL 155 (157)
Q Consensus 142 ~~~~~eil~~i~~L 155 (157)
...+++++..|+.|
T Consensus 161 ~~ev~~vi~li~~l 174 (174)
T pfam09695 161 PAEIQQVIGLIKKL 174 (174)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999998629
No 67
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.95 E-value=1.8e-05 Score=55.06 Aligned_cols=92 Identities=15% Similarity=0.189 Sum_probs=54.6
Q ss_pred HCCCEEEEEEEECCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 69985999965113676631126100---000000012333322234443211112222100000000123445899859
Q gi|254780212|r 28 LGGSKIVLYFYPKDDTSGCTAEAINF---SSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYD 104 (157)
Q Consensus 28 l~gk~vvl~f~~~~~tp~C~~e~~~l---~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~g 104 (157)
-.||+++|.|| ++||+.|..--+.. .+..+.++ .++.++-+..... .+...++.+.||
T Consensus 9 ~~gKpVlvdf~-A~WC~~Ck~m~~~~~~~~~v~~~~~-~~~v~vkvD~t~~-----------------~~~~~~l~~~~~ 69 (104)
T cd02953 9 AQGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALK-KDVVLLRADWTKN-----------------DPEITALLKRFG 69 (104)
T ss_pred HCCCCEEEEEE-CCCCHHHHHHHHHCCCCHHHHHHHH-CCCCEEECCCCCC-----------------CHHHHHHHHHCC
T ss_conf 82991999998-6758888851142048899999972-4773576367789-----------------989999999839
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCEEE-EEECCCCCCCCHHHHHHHHH
Q ss_conf 86666557665444210799988999799-99768885789999999999
Q gi|254780212|r 105 VWKEKSMFGKKYMGVVRTTFLIDEKGIIA-QIWKPVTLKNHAQSVLKMVK 153 (157)
Q Consensus 105 v~~~~~~~~~~~~~~~r~tfiid~~G~I~-~~~~~~~~~~~~~eil~~i~ 153 (157)
+.+ .|+.+++|++|... ..+.|.- +.+++++.|+
T Consensus 70 v~g------------~Pt~~f~~~~g~~~~~~l~G~~---~~~~fl~~Le 104 (104)
T cd02953 70 VFG------------PPTYLFYGPGGEPEPLRLPGFL---TADEFLEALE 104 (104)
T ss_pred CCC------------CCEEEEECCCCCCCCCEEECCC---CHHHHHHHHC
T ss_conf 955------------6779998799986762612304---8999999759
No 68
>PRK10996 thioredoxin 2; Provisional
Probab=97.88 E-value=4e-05 Score=52.91 Aligned_cols=88 Identities=11% Similarity=0.216 Sum_probs=62.5
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
...+||+.|| +.||++|....+.|.++.+++..+ +.++-|.+ |.+.+++.+|||..
T Consensus 51 s~~PVlVdFw-A~WCgPCk~m~P~~e~lA~~~~~k-v~f~kVd~---------------------d~~~~la~~~~I~s- 106 (139)
T PRK10996 51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSGK-VRFVKVNT---------------------EAERELSARFGIRS- 106 (139)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCC-EEEEEEEC---------------------HHHHHHHHHCCCCC-
T ss_conf 8998899998-998870674289999998862894-79999952---------------------57778888707671-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 65576654442107999889997999976888578999999999985
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L 155 (157)
.|+. ++=++|+.+..+.|..+ .+++...|++.
T Consensus 107 -----------iPTl-ilfk~G~~v~r~~Ga~p---~~~l~~wl~q~ 138 (139)
T PRK10996 107 -----------IPTI-MIFKNGQVVDMLNGAVP---KAPFDSWLNEA 138 (139)
T ss_pred -----------CCEE-EEEECCEEEEEEECCCC---HHHHHHHHHHH
T ss_conf -----------8859-99989989777768999---99999999964
No 69
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.88 E-value=2.2e-05 Score=54.57 Aligned_cols=84 Identities=15% Similarity=0.263 Sum_probs=56.1
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
.+++++|+|| +.||+.|....+.+.++.+++. ++.++-|..|. +..++++|++..
T Consensus 9 ~~~~vlv~f~-a~wC~~C~~~~p~l~~~~~~~~--~~~~~~vd~~~---------------------~~~l~~~~~i~~- 63 (93)
T cd02947 9 SAKPVVVDFW-APWCGPCKAIAPVLEELAEEYP--KVKFVKVDVDE---------------------NPELAEEYGVRS- 63 (93)
T ss_pred CCCCEEEEEE-CCCCCCCCCCCHHHHHHCCCCC--CEEEEEECCCC---------------------CHHHHHCCCCCC-
T ss_conf 8995999997-8998262023601223224445--45999955765---------------------953530578673-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 65576654442107999889997999976888578999999999
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMV 152 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i 152 (157)
.|+..++ ++|+.+..+.|.... +++.+.|
T Consensus 64 -----------~Pt~~~~-~~G~~~~~~~G~~~~---~~l~~~i 92 (93)
T cd02947 64 -----------IPTFLFF-KNGKEVDRVVGADPK---EELEEFL 92 (93)
T ss_pred -----------CCCEEEE-ECCEEEEEEECCCCH---HHHHHHH
T ss_conf -----------6968999-899899999789999---9999966
No 70
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.84 E-value=4.3e-05 Score=52.75 Aligned_cols=85 Identities=19% Similarity=0.291 Sum_probs=58.1
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
.++.+|+.|| +.||++|....+.+.++..++.. ++.++-|..| ...++++.|+|..
T Consensus 13 ~~k~vvv~F~-a~wC~pCk~~~p~l~~la~~~~~-~v~f~kvd~d---------------------~~~~l~~~~~I~~- 68 (97)
T cd02984 13 ASKLLVLHFW-APWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAE---------------------ELPEISEKFEITA- 68 (97)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCC---------------------CCHHHHHHCCCCC-
T ss_conf 9986999998-99897489997999999888289-7799997340---------------------0889998739872-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 655766544421079998899979999768885789999999999
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVK 153 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~ 153 (157)
.|+..++ ++|+.+..+.|.+ ++++.+.|+
T Consensus 69 -----------~Pt~~~~-k~G~~v~~~~G~~----~~~l~~~i~ 97 (97)
T cd02984 69 -----------VPTFVFF-RNGTIVDRVSGAD----PKELAKKVE 97 (97)
T ss_pred -----------CCEEEEE-ECCEEEEEEECCC----HHHHHHHHC
T ss_conf -----------1479999-9999999997979----899998529
No 71
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.79 E-value=3.6e-05 Score=53.25 Aligned_cols=96 Identities=13% Similarity=0.142 Sum_probs=64.4
Q ss_pred EHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 28986998599996511367663112610000000001233332223444321--1112222100000000123445899
Q gi|254780212|r 24 SLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIA--SHKKFHQKHNLSITLLADESKEVLK 101 (157)
Q Consensus 24 ~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~--~~~~~~~~~~~~fpil~D~~~~~~~ 101 (157)
.++++..++-+++||++ .||.|..+.+-++...+++ |+.|++||.|... ....+. .+.-.++
T Consensus 136 ~l~~la~~~GLffFy~~-~c~~c~~~apil~~fa~~y---g~~vi~VS~DG~~~p~fp~~r------------~d~Gqa~ 199 (247)
T PRK13703 136 AIAKLAEHYGLMFFYRG-QDPIDGQLAQVINGFRKTY---GLSVIPVSVDGVINPLLPDSR------------TDQGQAQ 199 (247)
T ss_pred HHHHHHHCCEEEEEECC-CCHHHHHHHHHHHHHHHHH---CCEEEEEECCCCCCCCCCCCC------------CCHHHHH
T ss_conf 99999871238999868-9804699899999999985---977999833898687778777------------7867897
Q ss_pred HCCCCCCCCCCCCCCCCCCEEEEEECCCC-EEEEEECCCCCCCCHHHHHH
Q ss_conf 85986666557665444210799988999-79999768885789999999
Q gi|254780212|r 102 SYDVWKEKSMFGKKYMGVVRTTFLIDEKG-IIAQIWKPVTLKNHAQSVLK 150 (157)
Q Consensus 102 ~~gv~~~~~~~~~~~~~~~r~tfiid~~G-~I~~~~~~~~~~~~~~eil~ 150 (157)
.+||- ..|++||++|++ .+.-+-+|.-. .+|+++
T Consensus 200 ~l~V~------------~~PAL~Lv~p~t~~~~Pva~G~iS---~deL~~ 234 (247)
T PRK13703 200 RLGVK------------YFPALMLVDPKSGSVRPLSYGFIT---QDDLAK 234 (247)
T ss_pred HCCCC------------CCCEEEEEECCCCCEEEEEECCCC---HHHHHH
T ss_conf 36984------------165699998899928877311277---999999
No 72
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.74 E-value=8.6e-05 Score=50.89 Aligned_cols=88 Identities=15% Similarity=0.311 Sum_probs=56.6
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 998599996511367663112610000000001233-3322234443211112222100000000123445899859866
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES-TILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWK 107 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~g-v~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~ 107 (157)
.++++++.|| +.||+.|..-.+.+.++.+.++..+ +.+..|..+. |.+..+.+.|+|..
T Consensus 16 ~~~~vlV~Fy-A~WC~~Ck~~~P~~~~~a~~~~~~~~~~~~~vd~~~-------------------~~~~~l~~~~~V~~ 75 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK-------------------PEHDALKEEYNVKG 75 (104)
T ss_pred CCCCEEEEEE-CCCCHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCC-------------------CCCHHHHHHCCCCC
T ss_conf 6998999998-899811115676499999997555887999997563-------------------00787886546455
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 665576654442107999889997999976888578999999999
Q gi|254780212|r 108 EKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMV 152 (157)
Q Consensus 108 ~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i 152 (157)
.|+..+. ++|+.+..+.|. +..+++.+.|
T Consensus 76 ------------~PTi~~f-~~G~~~~~y~G~---r~~e~l~~Fi 104 (104)
T cd02997 76 ------------FPTFKYF-ENGKFVEKYEGE---RTAEDIIEFM 104 (104)
T ss_pred ------------CCEEEEE-ECCEEEEEEECC---CCHHHHHHHC
T ss_conf ------------8789999-899496777778---8989999659
No 73
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.72 E-value=5.3e-05 Score=52.18 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=59.3
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
..+.+|+.|| ++||++|..-.+.+.++..++.+..+.++.+..|..+. ++.|++.
T Consensus 16 ~~~lvvVdf~-A~WCGPCk~i~P~~~~l~~e~~~~~~~~~~~~~d~~~~----------------------~~~~~i~-- 70 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDT----------------------LKRYRGK-- 70 (102)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHH----------------------HHHHCCE--
T ss_conf 7994999998-99774578878999999987478708999977998679----------------------9984988--
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 65576654442107999889997999976888578999999999985
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L 155 (157)
..|+ |++=++|+++....|. +.+++.+.|++|
T Consensus 71 ----------s~PT-f~~fknG~~v~~~~GA----~~~~L~~~I~~l 102 (102)
T cd02948 71 ----------CEPT-FLFYKNGELVAVIRGA----NAPLLNKTITEL 102 (102)
T ss_pred ----------EEEE-EEEEECCEEEEEEECC----CHHHHHHHHHHC
T ss_conf ----------6308-9999999999999798----989999999749
No 74
>TIGR02740 TraF-like TraF-like protein; InterPro: IPR014111 This entry contains TraF-like proteins that are related to the F-type conjugation system pilus assembly proteins TraF (IPR014110 from INTERPRO)and TrbB (IPR014109 from INTERPRO) both of which exhibit a thioredoxin fold . The proteins in this entry have the same length and architecture as TraF, but lack the CXXC-motif found in TrbB that is believed to be responsible for the disulphide isomerase activity..
Probab=97.69 E-value=6.7e-05 Score=51.57 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=66.0
Q ss_pred EEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 82898699859999651136766311261000000000123333222344432111122221000000001234458998
Q gi|254780212|r 23 ISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKS 102 (157)
Q Consensus 23 ~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~ 102 (157)
.-+.++.++..|.|||.++.|++|..+.+-|......| |+.|++||+|-..-- +-.||=. =+|.-+++.
T Consensus 187 ~v~~~la~~~GlFFFf~S~~C~~C~~~~pil~~~~~~Y---G~~V~pvS~DG~PLp-------~G~FPn~-~pD~G~a~~ 255 (306)
T TIGR02740 187 RVLKELAKKSGLFFFFKSDDCPYCHAQAPILKAFEDRY---GIEVLPVSVDGGPLP-------GGKFPNA-RPDAGQAQK 255 (306)
T ss_pred HHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC---CCEEEEEEECCCCCC-------CCCCCCC-CCCHHHHHH
T ss_conf 99999740751689972788662268999999999731---970899984588878-------7888885-214036754
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCE-EEEEECCCCCCCCHHHHHH
Q ss_conf 59866665576654442107999889997-9999768885789999999
Q gi|254780212|r 103 YDVWKEKSMFGKKYMGVVRTTFLIDEKGI-IAQIWKPVTLKNHAQSVLK 150 (157)
Q Consensus 103 ~gv~~~~~~~~~~~~~~~r~tfiid~~G~-I~~~~~~~~~~~~~~eil~ 150 (157)
++| +.....||+||++|... +.-+-.|.- ..+++.+
T Consensus 256 L~i---------Gtd~~VPA~~L~~p~p~~~~~igfG~~---S~~~L~~ 292 (306)
T TIGR02740 256 LKI---------GTDRTVPAVFLVDPKPNQITPIGFGVM---SADELVD 292 (306)
T ss_pred HCC---------CCCCCCCEEEEEECCCCCEEEEEECCC---CHHHHHH
T ss_conf 046---------766546658999858990368740200---3888988
No 75
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.55 E-value=0.00021 Score=48.50 Aligned_cols=87 Identities=10% Similarity=0.211 Sum_probs=55.7
Q ss_pred HCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 69985999965113676631126100000000012333322234443211112222100000000123445899859866
Q gi|254780212|r 28 LGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWK 107 (157)
Q Consensus 28 l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~ 107 (157)
++|.| +|.|| +.|||.|..-.+.+.++.+.++..++.+.-|.. |.+..+++.|+|..
T Consensus 15 ~~g~~-lV~Fy-ApWC~~Ck~l~P~~e~la~~~~~~~v~i~~vD~---------------------~~~~~l~~~~~I~~ 71 (101)
T cd02994 15 LEGEW-MIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDV---------------------TQEPGLSGRFFVTA 71 (101)
T ss_pred HCCCE-EEEEE-CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECC---------------------CCCHHHHHHCCEEE
T ss_conf 38988-99998-998735777748999999864678779999017---------------------55965785478078
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 66557665444210799988999799997688857899999999998
Q gi|254780212|r 108 EKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 108 ~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~ 154 (157)
.|+.+++ ++|.++ .|.| .+..+++++.|++
T Consensus 72 ------------~PTi~~~-~~G~~~-~y~G---~rt~~~l~~fi~e 101 (101)
T cd02994 72 ------------LPTIYHA-KDGVFR-RYQG---PRDKEDLISFIEE 101 (101)
T ss_pred ------------EEEEEEE-ECCCEE-EEEC---CCCHHHHHHHHHC
T ss_conf ------------4189998-199386-6147---9999999999709
No 76
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.52 E-value=0.00037 Score=47.00 Aligned_cols=91 Identities=10% Similarity=0.131 Sum_probs=57.8
Q ss_pred HCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 69985999965113676631126100000000012333322234443211112222100000000123445899859866
Q gi|254780212|r 28 LGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWK 107 (157)
Q Consensus 28 l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~ 107 (157)
-+++.++|.|| +.|||.|..-.+.+.++..+++..+..+-...+| ++.+..+.+.|+|..
T Consensus 13 ~~~~~~lV~Fy-apWC~~Ck~~~P~w~~~a~~~~~~~~~v~v~~vd-------------------~~~~~~~~~~~~I~~ 72 (104)
T cd03000 13 RKEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLD-------------------ATAYSSIASEFGVRG 72 (104)
T ss_pred HCCCEEEEEEE-CCCCHHHHHCCHHHHHHHHHHHHHCCCEEEECCC-------------------CHHCHHHHHHCCCCC
T ss_conf 46992999998-9989879823189999999987518864562046-------------------203566797769844
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 665576654442107999889997999976888578999999999985
Q gi|254780212|r 108 EKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 108 ~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L 155 (157)
.|+.++.. +|.+. .|.| +++.+++++.++++
T Consensus 73 ------------~PTi~~f~-~~~~~-~Y~G---~rt~~~l~~Fi~k~ 103 (104)
T cd03000 73 ------------YPTIKLLK-GDLAY-NYRG---PRTKDDIVEFANRV 103 (104)
T ss_pred ------------CCEEEEEE-CCEEE-EECC---CCCHHHHHHHHHHH
T ss_conf ------------68899997-99577-5038---99999999999963
No 77
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB; InterPro: IPR014109 This entry includes thiol-disulphide isomerase (TrbB), a protein that is involved in conjugative transfer of plasmid DNA, specifically in the F-type system. TrbB has been predicted to contain a thioredoxin fold, it also contains a conserved pair of cysteines and has been shown to function as a thiol disulphide isomerase by complementation of Escherichia coli DsbA mutants . TtbB is believed to be involved in pilin assembly . TrbB is closely related to TraF (IPR014110 from INTERPRO) though somewhat longer lacking the cysteine motif and is apparently not functional as a disulphide bond isomerase..
Probab=97.48 E-value=8.1e-05 Score=51.05 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=65.8
Q ss_pred EEHHH----HCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 82898----69985999965113676631126100000000012333322234443211112222100000000123445
Q gi|254780212|r 23 ISLLA----LGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKE 98 (157)
Q Consensus 23 ~~l~~----l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~ 98 (157)
++|++ ....|-+|+||+ +.||+|..=.+-|+++.+++ |..|+++|.|... ...+.-..|+- -|
T Consensus 60 y~Ls~~r~~~~~~~~~vfF~~-S~CPyCh~FAP~LK~f~~~~---~~~V~a~SlDG~g-----~~~FP~~~P~t----pE 126 (176)
T TIGR02738 60 YRLSNGRKALLDDYALVFFYQ-STCPYCHQFAPVLKRFSQQF---GLSVYAFSLDGQG-----LAEFPDALPAT----PE 126 (176)
T ss_pred EEECHHHHHHHHCCEEEEEEC-CCCCCCCCCCHHHHHHHHHC---CCCEEEEEECCCC-----CCCCCCCCCCC----HH
T ss_conf 110336785444350788862-88964002265778788762---8753788733897-----87788765787----65
Q ss_pred HHHHCCCCCCCCCCCCC-CCCCCEEEEEECCCCEEEEE-ECCCCCCCCHHHHHHHHHH
Q ss_conf 89985986666557665-44421079998899979999-7688857899999999998
Q gi|254780212|r 99 VLKSYDVWKEKSMFGKK-YMGVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 99 ~~~~~gv~~~~~~~~~~-~~~~~r~tfiid~~G~I~~~-~~~~~~~~~~~eil~~i~~ 154 (157)
+.+.|= .+.+ .....|++||||++-+-.+. ..|.- +..|+-.-++.
T Consensus 127 ~~~~~F-------~~~ey~~~~~PalFLvNvnt~~~~~v~~G~~---~~~~L~~r~~~ 174 (176)
T TIGR02738 127 VMQTFF-------PNGEYRPVVTPALFLVNVNTRKAYPVLQGAV---DEAELANRMDE 174 (176)
T ss_pred HHHHHC-------CCCCCCEECCCEEEEECCCHHHHHHHHCCCC---CHHHHHHHHHH
T ss_conf 787633-------8897030102322333153788876433876---78999999987
No 78
>PTZ00051 thioredoxin; Provisional
Probab=97.38 E-value=0.00043 Score=46.57 Aligned_cols=75 Identities=23% Similarity=0.387 Sum_probs=52.3
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
.++.+|+.|| ++||++|..-.+.+.++.+++. ++.++-|..| ...++++.|+|..
T Consensus 17 ~~~~vvV~F~-a~wC~pCk~~~p~~~~l~~~~~--~~~f~~vd~d---------------------~~~~l~~~~~I~~- 71 (98)
T PTZ00051 17 GDSVVVVDFY-AEWCGPCMRFAPQFEELAKEHP--KLVFVKVNVD---------------------ELQELAQKYNVTS- 71 (98)
T ss_pred CCCEEEEEEE-CCCCCCCCCCCHHHHHHHHHCC--CEEEEEEECC---------------------CCHHHHHHCCCEE-
T ss_conf 8991999997-9998751126348999987678--5379999885---------------------8999999879879-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 65576654442107999889997999976888
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVT 140 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~ 140 (157)
.|+ |++=++|+....+.|.+
T Consensus 72 -----------~PT-~~~~k~G~~v~~~~Ga~ 91 (98)
T PTZ00051 72 -----------LPT-FKVFKSGQVVGEFLGAN 91 (98)
T ss_pred -----------EEE-EEEEECCEEEEEEECCC
T ss_conf -----------768-99999999999996879
No 79
>pfam05176 ATP-synt_10 ATP10 protein. ATP 10 is essential for the assembly of a functional mitochondrial ATPase complex.
Probab=97.34 E-value=0.0003 Score=47.61 Aligned_cols=133 Identities=12% Similarity=0.103 Sum_probs=74.6
Q ss_pred CCCEEEECCCCCEEEHHH-HCCCEEEEEEEECCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 373078869997882898-69985999965113676631126---100000000012333322234443211112222--
Q gi|254780212|r 10 APHFVLPSNDEQEISLLA-LGGSKIVLYFYPKDDTSGCTAEA---INFSSLKADFDEESTILIGISPDSIASHKKFHQ-- 83 (157)
Q Consensus 10 aP~f~l~~~~g~~~~l~~-l~gk~vvl~f~~~~~tp~C~~e~---~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~-- 83 (157)
+|+|.-.+.+++..++.+ +.||.-|+..|-..|---|.... +.+.+.+.+ ....+++|-|+...- -+++|.-
T Consensus 103 FPn~~G~TL~~~~~~tt~~l~GKvSvV~lfSs~~gE~~~~sf~~n~~l~~~l~~-~~~~~Q~v~IN~~en-~lK~~lvkl 180 (255)
T pfam05176 103 FPNFSGRTLAGPPQNTTDLLRGKVSVVRLFSSAWGEKQARSYFKNPFLKDYLKE-DYGDAQIVEINVEEN-WLKAWLVKL 180 (255)
T ss_pred CCCCCCCCCCCCCCCCCHHHCCCEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHC-CCCCCEEEEEECCHH-HHHHHHHHH
T ss_conf 865445547898766402216966899985107789998876159628899725-788723999845078-999999999
Q ss_pred -----------CCCCCCCCHHHH---HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHH
Q ss_conf -----------100000000123---445899859866665576654442107999889997999976888578999999
Q gi|254780212|r 84 -----------KHNLSITLLADE---SKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVL 149 (157)
Q Consensus 84 -----------~~~~~fpil~D~---~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil 149 (157)
+..-.| ++++. ...+-++.|+.+.. .=.+||||++|+||++-.|..++.+.+.+.
T Consensus 181 f~~~lr~~vP~~~~~~Y-f~~~~~~~~~~iRe~lg~~N~~----------vGYvyLvD~~~rIRWagsG~At~~E~e~L~ 249 (255)
T pfam05176 181 FMGNLRKKVPEERHERY-FIVRKGQLPFDIRESLGILNSL----------VGYVYLVDHNCRIRWAGSGPATEEELELLW 249 (255)
T ss_pred HHHHHHHHCCHHHCCEE-EEEECCCCCHHHHHHHCCCCCC----------EEEEEEECCCCCEEEECCCCCCHHHHHHHH
T ss_conf 87666632899773806-9987887887799875764310----------358999879871874106899879999999
Q ss_pred HHHHHH
Q ss_conf 999985
Q gi|254780212|r 150 KMVKSL 155 (157)
Q Consensus 150 ~~i~~L 155 (157)
+.|+.|
T Consensus 250 k~v~~L 255 (255)
T pfam05176 250 KCVRGL 255 (255)
T ss_pred HHHHCC
T ss_conf 987429
No 80
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.34 E-value=0.00044 Score=46.57 Aligned_cols=99 Identities=12% Similarity=0.173 Sum_probs=63.5
Q ss_pred EECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 88699978828986998599996511367663112610000000001233332223444321111222210000000012
Q gi|254780212|r 15 LPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLAD 94 (157)
Q Consensus 15 l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D 94 (157)
..-.||..+++.|++ |++||+ +.||+|..-.+.++.+.+++ |..++++|.|... ...+..+.|.
T Consensus 58 ~~LsdGr~vnl~dy~----lV~F~r-S~CPyChqFAP~Lk~~a~~~---gi~V~~~SlDG~g-----~~~FP~~lPa--- 121 (181)
T PRK13728 58 FRLSNGRQVNLADWK----VVLFMQ-GHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG-----DTAFPEALPA--- 121 (181)
T ss_pred EECCCCCEECCCCEE----EEEEEC-CCCCHHHHHCHHHHHHHHHH---CCEEEEEEECCCC-----CCCCCCCCCC---
T ss_conf 588999686243418----999973-88925776588999999985---9717998536988-----8788867779---
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE-ECCC
Q ss_conf 34458998598666655766544421079998899979999-7688
Q gi|254780212|r 95 ESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPV 139 (157)
Q Consensus 95 ~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~-~~~~ 139 (157)
..++.+.|- +. ..-..|++|+||.+-...+- ..|.
T Consensus 122 -Tpei~~tfF--------~n-~~~~tPatFLvNvnT~~ayPv~qG~ 157 (181)
T PRK13728 122 -PPDVMQTFF--------PN-IPVATPTTFLVNVNTLEALPLLQGA 157 (181)
T ss_pred -CHHHHHHHC--------CC-CCCCCCEEEEEECCCCCEECCCCCC
T ss_conf -879999974--------78-9878861699733741100111165
No 81
>KOG0910 consensus
Probab=97.33 E-value=0.00038 Score=46.93 Aligned_cols=94 Identities=15% Similarity=0.228 Sum_probs=63.2
Q ss_pred EEEHHHH------CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 8828986------9985999965113676631126100000000012333322234443211112222100000000123
Q gi|254780212|r 22 EISLLAL------GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADE 95 (157)
Q Consensus 22 ~~~l~~l------~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~ 95 (157)
..+.+++ .+.+|++.|| +.||.+|..-.+.++++.++++.. +.+.-|.+| +
T Consensus 47 ~~s~~~~~~~Vi~S~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD---------------------~ 103 (150)
T KOG0910 47 VQSDSEFDDKVINSDVPVLVDFH-AEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTD---------------------E 103 (150)
T ss_pred CCCHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCE-EEEEEECCC---------------------C
T ss_conf 56788999998746998899986-575743767469999987753371-789997265---------------------6
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 44589985986666557665444210799988999799997688857899999999998
Q gi|254780212|r 96 SKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 96 ~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~ 154 (157)
+.+++..|+|- ..|++++. ++|..+....|.-+. +.+...|+.
T Consensus 104 ~~ela~~Y~I~------------avPtvlvf-knGe~~d~~vG~~~~---~~l~~~i~k 146 (150)
T KOG0910 104 HPELAEDYEIS------------AVPTVLVF-KNGEKVDRFVGAVPK---EQLRSLIKK 146 (150)
T ss_pred CCCHHHHCCEE------------EEEEEEEE-ECCEEEEEECCCCCH---HHHHHHHHH
T ss_conf 60137646316------------50289998-799886622045798---999999999
No 82
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.28 E-value=0.00048 Score=46.31 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=55.5
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
.++++++.|| +.||+.|..-.+.+.++..++.. .+.+..|..| .+.++.+.|+|..
T Consensus 18 ~~~~~lV~Fy-apwC~~Ck~~~P~~~~~a~~~~~-~v~~~~vd~~---------------------~~~~~~~~~~V~~- 73 (104)
T cd03004 18 RKEPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQ---------------------KYESLCQQANIRA- 73 (104)
T ss_pred CCCEEEEEEE-CCCCHHHHHCCHHHHHHHHHHCC-CEEEEEEECC---------------------CCHHHHHCCCCEE-
T ss_conf 9980999998-99984466547579999999679-6289998884---------------------6974773678188-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 65576654442107999889997999976888578999999999
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMV 152 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i 152 (157)
.|+..+..++|+-...|.|. .|+++.+++.|
T Consensus 74 -----------~PTi~lf~~~~~~~~~y~G~--~R~~e~l~~fi 104 (104)
T cd03004 74 -----------YPTIRLYPGNASKYHSYNGW--HRDADSILEFI 104 (104)
T ss_pred -----------CCEEEEECCCCCCEEECCCC--CCCHHHHHHHC
T ss_conf -----------37899991989885457899--98999999659
No 83
>KOG0907 consensus
Probab=97.25 E-value=0.00062 Score=45.63 Aligned_cols=86 Identities=21% Similarity=0.322 Sum_probs=60.3
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
.+|.+|+.|| ++||++|..--+.+.++..+|.+ +.++-|.+|. . .++++.|+|..
T Consensus 20 ~~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--~~Flkvdvde---~------------------~~~~~~~~V~~- 74 (106)
T KOG0907 20 GDKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---L------------------EEVAKEFNVKA- 74 (106)
T ss_pred CCCEEEEEEE-CCCCCCCCCCCHHHHHHHHHCCC--CEEEEEECCC---H------------------HHHHHHCCCEE-
T ss_conf 9976999998-89888876502179999977889--7899983422---0------------------87787608616-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 65576654442107999889997999976888578999999999985
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L 155 (157)
.|+ |++=++|+.+-.+.|.+ .+++.+.+++.
T Consensus 75 -----------~PT-f~f~k~g~~~~~~vGa~----~~~l~~~i~~~ 105 (106)
T KOG0907 75 -----------MPT-FVFYKGGEEVDEVVGAN----KAELEKKIAKH 105 (106)
T ss_pred -----------EEE-EEEEECCEEEEEEECCC----HHHHHHHHHHC
T ss_conf -----------469-99998988889984699----99999998631
No 84
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.00022 Score=48.34 Aligned_cols=123 Identities=15% Similarity=0.311 Sum_probs=84.7
Q ss_pred EEEECCCCCEEEHHHH-CCCEEEEEE---E-E--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0788699978828986-998599996---5-1--1367663112610000000001233332223444321111222210
Q gi|254780212|r 13 FVLPSNDEQEISLLAL-GGSKIVLYF---Y-P--KDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKH 85 (157)
Q Consensus 13 f~l~~~~g~~~~l~~l-~gk~vvl~f---~-~--~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~ 85 (157)
..+...+| +.+|.+| .|+..||.. + | ..-||+|..-+..+.-....++..||.+++||.-+.+++.+|.++.
T Consensus 55 Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rm 133 (247)
T COG4312 55 YVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRM 133 (247)
T ss_pred EEEECCCC-CHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHC
T ss_conf 67326875-31299985898607999984278765899813667741413466675157128998448689999999860
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-------------CCCCCEEEEEECCCCEEEEEE
Q ss_conf 000000012344589985986666557665-------------444210799988999799997
Q gi|254780212|r 86 NLSITLLADESKEVLKSYDVWKEKSMFGKK-------------YMGVVRTTFLIDEKGIIAQIW 136 (157)
Q Consensus 86 ~~~fpil~D~~~~~~~~~gv~~~~~~~~~~-------------~~~~~r~tfiid~~G~I~~~~ 136 (157)
|..||..|+.+..+-+.|.|...+.-...+ ....--++|.=++.|.|-..+
T Consensus 134 GW~f~w~Ss~~s~Fn~Df~vsf~~~q~~~G~~~yn~~~~~~~~rd~~G~~vF~~~e~g~v~~ty 197 (247)
T COG4312 134 GWQFPWVSSTDSDFNRDFQVSFTEDQQAPGVVVYNFERTPPTGRDLPGISVFYSDEDGRVYHTY 197 (247)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCHHHCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 8861267536765552102234601116760575034577765568873488776888613354
No 85
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.20 E-value=0.00093 Score=44.53 Aligned_cols=88 Identities=18% Similarity=0.308 Sum_probs=54.4
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99859999651136766311261000000000123-33322234443211112222100000000123445899859866
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE-STILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWK 107 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~-gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~ 107 (157)
.+++++|.|| +.|||.|..-.+.+.++...++.. ++.+..|..|. . +..+.+.|++..
T Consensus 17 ~~~~vlV~Fy-a~wC~~Ck~~~p~~~~la~~~~~~~~v~i~~vd~d~--~------------------~~~l~~~~~I~~ 75 (105)
T cd02998 17 DKKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE--A------------------NKDLAKKYGVSG 75 (105)
T ss_pred CCCEEEEEEE-CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCC--C------------------CHHHHHHCCCCC
T ss_conf 8981999995-898888755450899999998568761376136674--3------------------334553157777
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 665576654442107999889997999976888578999999999
Q gi|254780212|r 108 EKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMV 152 (157)
Q Consensus 108 ~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i 152 (157)
.|+..+..+++.....|.| .++.+++++.|
T Consensus 76 ------------~Pti~~f~~~~~~~~~y~G---~r~~~~l~~Fi 105 (105)
T cd02998 76 ------------FPTLKFFPKGSTEPVKYEG---GRDLEDLVKFV 105 (105)
T ss_pred ------------CCEEEEEECCCCCEEEECC---CCCHHHHHHHC
T ss_conf ------------8889999899732789648---89999999659
No 86
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.18 E-value=0.0013 Score=43.59 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=52.5
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
..+++++.|| +.||+.|..-.+.+.++.++++.. +.+..|. +|.+..+++.|+|..
T Consensus 17 ~~~~vlV~Fy-a~wC~~C~~~~P~~~~~a~~~~~~-~~~a~vd---------------------~~~~~~l~~~~~I~~- 72 (103)
T cd03001 17 SDDVWLVEFY-APWCGHCKNLAPEWKKAAKALKGI-VKVGAVD---------------------ADVHQSLAQQYGVRG- 72 (103)
T ss_pred CCCEEEEEEE-CCCCCCCCCCCHHHHHHHHHHCCC-EEEEEEE---------------------CCHHHHHHHHCCCCE-
T ss_conf 9984999997-898877354484899999980686-2899998---------------------824431144269737-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf 6557665444210799988999799997688857899999999
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKM 151 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~ 151 (157)
.|+.++..+.+.....|.|. ++.+++++.
T Consensus 73 -----------~PTi~~f~~G~~~~~~Y~G~---R~~e~l~~F 101 (103)
T cd03001 73 -----------FPTIKVFGAGKNSPQDYQGG---RTAKAIVSA 101 (103)
T ss_pred -----------ECEEEEEECCCCCEEEECCC---CCHHHHHHH
T ss_conf -----------49899996995561576788---999999996
No 87
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.16 E-value=0.00091 Score=44.60 Aligned_cols=87 Identities=16% Similarity=0.284 Sum_probs=52.8
Q ss_pred HCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 6998599996511367663112610000000001233--33222344432111122221000000001234458998598
Q gi|254780212|r 28 LGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES--TILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDV 105 (157)
Q Consensus 28 l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~g--v~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv 105 (157)
...+.+++.|| +.||+.|..-.+.+.++.+++...+ +.+..|..+ .+..+.+.|++
T Consensus 14 v~~~~~lV~Fy-apWC~~C~~~~P~~~~la~~~~~~~~~v~i~~vd~~---------------------~~~~l~~~~~I 71 (102)
T cd03005 14 IAEGNHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT---------------------QHRELCSEFQV 71 (102)
T ss_pred HHCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC---------------------CCHHHHHCCCC
T ss_conf 80899999998-999977871433699999998841898899996054---------------------56255531125
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 66665576654442107999889997999976888578999999999
Q gi|254780212|r 106 WKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMV 152 (157)
Q Consensus 106 ~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i 152 (157)
-. .|+..+. ++|+....|.|. ++.+++.+.|
T Consensus 72 ~~------------~PTl~~f-~~G~~~~~y~G~---r~~~~l~~fi 102 (102)
T cd03005 72 RG------------YPTLLLF-KDGEKVDKYKGT---RDLDSLKEFV 102 (102)
T ss_pred CC------------CCEEEEE-ECCEEEEEEECC---CCHHHHHHHC
T ss_conf 66------------8879999-899496888679---9989999659
No 88
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.14 E-value=0.00073 Score=45.18 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=54.0
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 998599996511367663112610000000001233-----332223444321111222210000000012344589985
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES-----TILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSY 103 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~g-----v~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~ 103 (157)
.++.+++.|| +.|||.|..-.+.+.++...+++.. +.+..|.. |.+.++++.|
T Consensus 17 ~~~~~lV~Fy-A~WC~~Ck~~~P~~~~~a~~~~~~~~~~~~v~~~~vd~---------------------~~~~~l~~~~ 74 (108)
T cd02996 17 SAELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC---------------------DKESDIADRY 74 (108)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC---------------------CCCHHHHHHC
T ss_conf 6994999999-99998899864599999999886457787189999227---------------------6376679972
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCEEEE-EECCCCCCCCHHHHHHHH
Q ss_conf 9866665576654442107999889997999-976888578999999999
Q gi|254780212|r 104 DVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQ-IWKPVTLKNHAQSVLKMV 152 (157)
Q Consensus 104 gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~-~~~~~~~~~~~~eil~~i 152 (157)
+|.. .|+..+. ++|.... .|.| .++.+++.+.|
T Consensus 75 ~I~~------------yPTi~lf-~~G~~~~~~Y~G---~Rs~e~l~~Fi 108 (108)
T cd02996 75 RINK------------YPTLKLF-RNGMMMKREYRG---QRSVEALAEFV 108 (108)
T ss_pred CCCC------------CCEEEEE-ECCCCCCEEECC---CCCHHHHHHHC
T ss_conf 9875------------7779999-699496131179---89999999659
No 89
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.05 E-value=0.00075 Score=45.13 Aligned_cols=94 Identities=22% Similarity=0.356 Sum_probs=56.7
Q ss_pred CCCEEEEEEEECCCCCCCCC-CCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99859999651136766311-2610000--00000123333222344432111122221000000001234458998598
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTA-EAINFSS--LKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDV 105 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~-e~~~l~~--~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv 105 (157)
.||+|+|.|| ++||-.|.. |-..|.+ ..+.++ +++++=+ +++=-.+++.++.++||+
T Consensus 479 ~gKPV~VDFt-ADWCvtCK~~E~~tf~d~~V~~al~--~~~llk~-----------------DvT~~~~~~~all~~~~~ 538 (577)
T PRK00293 479 AGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQA-----------------DVTANNAEDVALLKHYNV 538 (577)
T ss_pred CCCCEEEEEE-CHHHHHHHHHHHHHCCCHHHHHHHC--CCEEEEE-----------------ECCCCCHHHHHHHHHCCC
T ss_conf 7990999998-4687779999998579889999863--9818999-----------------779999999999997499
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEEE--CCCCCCCCHHHHHHHHHHHHC
Q ss_conf 6666557665444210799988999799997--688857899999999998509
Q gi|254780212|r 106 WKEKSMFGKKYMGVVRTTFLIDEKGIIAQIW--KPVTLKNHAQSVLKMVKSLKQ 157 (157)
Q Consensus 106 ~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~--~~~~~~~~~~eil~~i~~L~~ 157 (157)
.+ .|+....|++|+-+... .|. -++++.++.++++|.
T Consensus 539 ~G------------pP~~lf~~~~G~e~~~~r~~G~---~~~~~f~~~l~~i~~ 577 (577)
T PRK00293 539 LG------------LPTILFFDAQGQEIPDARVTGF---MDAATFAAHLRDLQP 577 (577)
T ss_pred CC------------CCEEEEECCCCCCCCCCEEEEE---CCHHHHHHHHHHCCC
T ss_conf 88------------9889999999978447615775---069999999973399
No 90
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=96.98 E-value=0.0018 Score=42.80 Aligned_cols=87 Identities=13% Similarity=0.242 Sum_probs=53.1
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99859999651136766311261000000000123-33322234443211112222100000000123445899859866
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE-STILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWK 107 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~-gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~ 107 (157)
.++.++|.|| +.|||.|..-.+.+.++...++.. ++.+..|..+. .. .+.+.|++.
T Consensus 14 ~~~~~lV~Fy-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~vd~~~---~~------------------~~~~~~~i~- 70 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---NN------------------DLCSEYGVR- 70 (101)
T ss_pred CCCCEEEEEE-CCCCCCCHHHCHHHHHHHHHHCCCCCEEEEEEECCC---CH------------------HHCCCCCEE-
T ss_conf 3998999998-899804033267789999985148978999998755---34------------------222267736-
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 665576654442107999889997999976888578999999999
Q gi|254780212|r 108 EKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMV 152 (157)
Q Consensus 108 ~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i 152 (157)
..|+.++..++++....+.|.. ..+++.+.|
T Consensus 71 -----------~~Pti~~f~~~~~~~~~y~G~~---~~~~l~~fi 101 (101)
T cd02961 71 -----------GYPTIKLFPNGSKEPVKYEGPR---TLESLVEFI 101 (101)
T ss_pred -----------EECEEEEEECCCEEEEEECCCC---CHHHHHHHC
T ss_conf -----------8287999989954355746989---999999659
No 91
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.98 E-value=0.0014 Score=43.46 Aligned_cols=75 Identities=12% Similarity=0.196 Sum_probs=51.8
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
..+.+|+.|| +.||+.|..-.+.|.++..++. ++.++-|++|. ...+++.|++..
T Consensus 21 ~~~~VVV~Fy-a~wc~~Ck~l~p~l~~lA~~~~--~v~F~kvn~d~---------------------~p~i~~~~~I~~- 75 (113)
T cd02989 21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEK---------------------APFLVEKLNIKV- 75 (113)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCC---------------------CHHHHHHCCCCC-
T ss_conf 7997999998-9999667888999999999787--97599998467---------------------977899869875-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 65576654442107999889997999976888
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVT 140 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~ 140 (157)
.|+. ++=++|+++....|..
T Consensus 76 -----------lPT~-~~fk~G~~vd~ivGf~ 95 (113)
T cd02989 76 -----------LPTV-ILFKNGKTVDRIVGFE 95 (113)
T ss_pred -----------CCEE-EEEECCEEEEEEECCH
T ss_conf -----------8889-9999999989999942
No 92
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=96.95 E-value=0.00033 Score=47.27 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=48.5
Q ss_pred HHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 98699859999651136766311261000000000123333222344432111122221000000001234458998598
Q gi|254780212|r 26 LALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDV 105 (157)
Q Consensus 26 ~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv 105 (157)
+.-.||+++|.|| ++||+.|..-.+.|.+. +++.+..-.+|.|++|+.++-. .+ +|.+
T Consensus 15 Ak~~~KPiml~~~-~~wC~~Ck~mk~~f~e~-~ei~~ls~~FVminvd~deep~--~~------------------~~~~ 72 (117)
T cd02959 15 AKDSGKPLMLLIH-KTWCGACKALKPKFAES-KEISELSHNFVMVNLEDDEEPK--DE------------------EFSP 72 (117)
T ss_pred HHHHCCCEEEEEC-CCCCHHHHHHHHHHHHC-HHHHHHHHCCEEEECCCCCCCC--CC------------------CCCC
T ss_conf 9984999999973-21176799999998619-9999997565798636777775--20------------------0265
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf 6666557665444210799988999799997
Q gi|254780212|r 106 WKEKSMFGKKYMGVVRTTFLIDEKGIIAQIW 136 (157)
Q Consensus 106 ~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~ 136 (157)
++ +-.|-.+.+||+|+|+.-.
T Consensus 73 ---DG-------~YvPri~FlD~~g~v~~di 93 (117)
T cd02959 73 ---DG-------GYIPRILFLDPSGDVHPEI 93 (117)
T ss_pred ---CC-------CCCCEEEEECCCCCCCHHH
T ss_conf ---78-------7132289989999782433
No 93
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=96.89 E-value=0.0022 Score=42.29 Aligned_cols=91 Identities=12% Similarity=0.149 Sum_probs=51.9
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
.++++++.|| +.||+.|..-.+.+.++.++++.. +.+..+..|.. .+..+.+.|+|-.
T Consensus 17 ~~~~~lV~Fy-ApWC~~Ck~~~P~~~~~a~~~~~~-~~~~~vd~d~~-------------------~~~~i~~~~~I~~- 74 (109)
T cd03002 17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDED-------------------KNKPLCGKYGVQG- 74 (109)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCC-CEEEEEECCCC-------------------CCHHHHHHCCCCC-
T ss_conf 9983999998-886811677679999999980887-22899965634-------------------2465798769844-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEE-EECCCCCCCCHHHHHHHH
Q ss_conf 65576654442107999889997999-976888578999999999
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQ-IWKPVTLKNHAQSVLKMV 152 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~-~~~~~~~~~~~~eil~~i 152 (157)
.|+..+..+.++... ....+.-.++.+++++.|
T Consensus 75 -----------~PTi~~f~~G~~~~k~~~~~y~G~Rt~~~i~~Fi 108 (109)
T cd03002 75 -----------FPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred -----------CCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf -----------8879999596404777862557888999999965
No 94
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626; InterPro: IPR006513 These are sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. .
Probab=96.84 E-value=0.0027 Score=41.72 Aligned_cols=139 Identities=19% Similarity=0.203 Sum_probs=86.7
Q ss_pred CCCCCCCCCEEEEC----------CCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCC-CCCCC--CCCCCCCCCCCC-C
Q ss_conf 77986537307886----------9997882898699859999651136766311261-00000--000012333322-2
Q gi|254780212|r 4 LSVGDKAPHFVLPS----------NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAI-NFSSL--KADFDEESTILI-G 69 (157)
Q Consensus 4 l~vG~~aP~f~l~~----------~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~-~l~~~--~~~~~~~gv~vv-~ 69 (157)
|++|++.|...+.+ ..=+.++..+|.||.-||.---| =| ..+|.. .|-+. ..+|.....+-= -
T Consensus 23 L~v~q~vP~Vgv~~~GEivL~~~~~~yq~W~SA~LaGKVRV~~hiAG-Rt--saKE~Na~li~aIkaakfp~~~YQTTTI 99 (184)
T TIGR01626 23 LEVEQSVPAVGVEERGEIVLSDDDISYQKWRSAELAGKVRVVLHIAG-RT--SAKEKNASLIEAIKAAKFPAEKYQTTTI 99 (184)
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC-CC--HHHHCCCCHHHHHHHHCCCCCCCCCCEE
T ss_conf 12488589711135401675278400158741556415776565415-51--0011376189999863378767752114
Q ss_pred CCCCCCC-----CCCCCCCCC--CCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 3444321-----111222210--00000-001234458998598666655766544421079998899979999768885
Q gi|254780212|r 70 ISPDSIA-----SHKKFHQKH--NLSIT-LLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTL 141 (157)
Q Consensus 70 is~d~~~-----~~~~~~~~~--~~~fp-il~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~ 141 (157)
|+.|+.= -.+.=+++. .+||. ++.|+.+.+..++++-.+. -+++|+|++|+|.++-.|.=.
T Consensus 100 iN~DDAI~GtgmFVkssa~~~Kke~PwSq~vlD~~g~v~nAWqL~~e~-----------SAiIVlDK~G~V~fVKeGaL~ 168 (184)
T TIGR01626 100 INADDAIVGTGMFVKSSAKKSKKEYPWSQVVLDEKGVVKNAWQLKEED-----------SAIIVLDKDGKVKFVKEGALS 168 (184)
T ss_pred EECCCCEECCCHHEECCHHCCCCCCCEEEEEECCHHHHHHHHCCCCCC-----------CEEEEECCCCCEEEEECCCCC
T ss_conf 506885006850101002107723780117886546887542145568-----------658897277735577557668
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 789999999999850
Q gi|254780212|r 142 KNHAQSVLKMVKSLK 156 (157)
Q Consensus 142 ~~~~~eil~~i~~L~ 156 (157)
..++..|+..|..|-
T Consensus 169 ~~diQtV~~L~~~ll 183 (184)
T TIGR01626 169 EADIQTVVDLVQKLL 183 (184)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 135778999997632
No 95
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=96.79 E-value=0.00042 Score=46.68 Aligned_cols=45 Identities=11% Similarity=0.213 Sum_probs=36.5
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9985999965113676631126100000000012333322234443
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDS 74 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~ 74 (157)
.++.+++.|| +.||+.|..-.+.+.++.+.++..++.+..|..|.
T Consensus 20 ~~k~~lV~FY-APWCghCk~l~P~~~~lA~~l~~~~v~v~~vd~d~ 64 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 6998899999-99888888677899999998655897899997787
No 96
>TIGR01126 pdi_dom protein disulfide-isomerase domain; InterPro: IPR005788 This is a domain of eukaryotic protein disulphide isomerases, generally found in two copies. The domain is similar to thioredoxin but the redox-active disulphide region motif is APWCGHCK. ; GO: 0016853 isomerase activity.
Probab=96.54 E-value=0.0042 Score=40.56 Aligned_cols=88 Identities=16% Similarity=0.307 Sum_probs=59.2
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHCCC
Q ss_conf 998599996511367663112610000000001233--33222344432111122221000000001234-458998598
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES--TILIGISPDSIASHKKFHQKHNLSITLLADES-KEVLKSYDV 105 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~g--v~vv~is~d~~~~~~~~~~~~~~~fpil~D~~-~~~~~~~gv 105 (157)
.++.|||-|| +-||+.|-.=.|.+.++.++|+..+ +.|--|- +|.+ ..+++.|+|
T Consensus 13 ~~~~vLVeFY-APWCGHCK~LAP~YEk~A~~l~~~~~~i~~AKvD---------------------At~~G~~l~~~y~V 70 (107)
T TIGR01126 13 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKKQKSKIVLAKVD---------------------ATAEGKDLASRYGV 70 (107)
T ss_pred CCCEEEEEEC-CCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE---------------------CCCCCCCCCCEECC
T ss_conf 9980799861-8876766886743789888874278995478753---------------------68435201010022
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEE--EEEECCCCCCCCHHHHHHHHHH
Q ss_conf 666655766544421079998899979--9997688857899999999998
Q gi|254780212|r 106 WKEKSMFGKKYMGVVRTTFLIDEKGII--AQIWKPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 106 ~~~~~~~~~~~~~~~r~tfiid~~G~I--~~~~~~~~~~~~~~eil~~i~~ 154 (157)
-+ -||..+. ++|.- -.-|.| +|+.++|.+.|.+
T Consensus 71 ~G------------fPTikff-~~G~~~NP~~Y~G---~R~~~~~~~F~~e 105 (107)
T TIGR01126 71 SG------------FPTIKFF-PKGSKENPVDYEG---GRDLEAIVEFVNE 105 (107)
T ss_pred CC------------CCCEEEE-CCCCCCCCCCCCC---CCCHHHHHHHHHH
T ss_conf 02------------5505786-2878148921589---8687889999860
No 97
>TIGR01130 ER_PDI_fam protein disulfide isomerases; InterPro: IPR005792 This family represents eukaryotic protein disulphide isomerases retained in the endoplasmic reticulum (ER) and other closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulphide domains, each similar to thioredoxin but with the redox-active disulphide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). ; GO: 0016853 isomerase activity, 0005783 endoplasmic reticulum.
Probab=96.46 E-value=0.0013 Score=43.57 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=45.4
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCH
Q ss_conf 9859999651136766311261000000000123333222344432111122221000-00000
Q gi|254780212|r 30 GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNL-SITLL 92 (157)
Q Consensus 30 gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~-~fpil 92 (157)
...+|+-|| +-||++|..=.|++.+..+.+++.|-.|.-..+|-.+. +..|.+||+ .||-|
T Consensus 18 ~~~vLVeFY-APWCGHCK~LAPEY~~AA~~L~~~~p~i~LAKVDaT~e-~~La~kygV~GYPTL 79 (522)
T TIGR01130 18 NEFVLVEFY-APWCGHCKSLAPEYEKAATELKKKGPPIKLAKVDATEE-KDLAQKYGVSGYPTL 79 (522)
T ss_pred CCEEEEEEC-CCCCCHHCCCCHHHHHHHHHHHHCCCCEEEEEEECCCH-HHHHHHCCCCCCCCC
T ss_conf 985899952-88344110534368999999985589804888407610-322502576645430
No 98
>PTZ00102 disulphide isomerase; Provisional
Probab=96.41 E-value=0.0089 Score=38.52 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=35.7
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 9859999651136766311261000000000123333222344432111122221000-000
Q gi|254780212|r 30 GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNL-SIT 90 (157)
Q Consensus 30 gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~-~fp 90 (157)
.+.+++-|| +.||+.|.+-.+++.++...+++.+-.+..--+|-.+ .++.++++++ .||
T Consensus 50 ~~~vLV~FY-APWCGHCK~LaPey~~AA~~Lk~~~~~V~lakVDct~-~~~L~~~~~I~gYP 109 (479)
T PTZ00102 50 NDLVLVKFY-APWCGHCKRLAPEYNKAAKMLSEEKSEVKLASVDATE-ENALAQEYGVTGYP 109 (479)
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC-CHHHHHHCCCCCCC
T ss_conf 982899998-9865877746599999999988428953899974765-68789863988787
No 99
>PHA02125 thioredoxin-like protein
Probab=96.28 E-value=0.013 Score=37.43 Aligned_cols=71 Identities=10% Similarity=0.159 Sum_probs=43.2
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99965113676631126100000000012333322234443211112222100000000123445899859866665576
Q gi|254780212|r 34 VLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFG 113 (157)
Q Consensus 34 vl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~ 113 (157)
|++|| ++||+.|..-.+-|.+.--. |. -+=.|...+++.+|+|..
T Consensus 2 i~~F~-A~WCgpCk~l~P~l~~ie~~---------------------~~-------~VD~D~~~~la~k~~Ir~------ 46 (75)
T PHA02125 2 IYLFG-AEWCANCKMVKPMLANVEYT---------------------YV-------DVDTDEGVELTAKHHIRS------ 46 (75)
T ss_pred EEEEE-CCCCCCHHHCCCCCHHCCCE---------------------EE-------EECCCCCHHHHHHCCCCC------
T ss_conf 89984-78775321136672111635---------------------79-------834553776898749615------
Q ss_pred CCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf 65444210799988999799997688857899999999
Q gi|254780212|r 114 KKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKM 151 (157)
Q Consensus 114 ~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~ 151 (157)
.|+ || ||+.+..+.|.. ++..|..+.
T Consensus 47 ------IPT-~i---nG~ev~RfvG~~--rk~~e~ke~ 72 (75)
T PHA02125 47 ------LPT-LV---NTSTLDRFTGVP--RNVAELKEK 72 (75)
T ss_pred ------CCE-EE---CCEEEEEEECCC--CCHHHHHHH
T ss_conf ------981-78---998952064464--238999997
No 100
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0051 Score=40.02 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=33.7
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSI 75 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~ 75 (157)
+-++||+.|| +.||+.|..=++.+.++..+++-+ +.+.-|++|..
T Consensus 42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~~ 86 (304)
T COG3118 42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDAE 86 (304)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHCCC-EEEEEECCCCC
T ss_conf 6787699851-887706899989999999985892-59998468736
No 101
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.23 E-value=0.0013 Score=43.57 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=52.6
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
.++.+++-|| +.||+.|..-.+.+.++...+.+ +.++++- . ++...+++++|||-+
T Consensus 17 ~~~~vlV~FY-ApWC~hCk~l~P~~~~la~~~~~--~~~~a~~--~------------------~~~~~~l~~~ygV~g- 72 (100)
T cd02999 17 REDYTAVLFY-ASWCPFSASFRPHFNALSSMFPQ--IRHLAIE--E------------------SSIKPSLLSRYGVVG- 72 (100)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CCEEEEE--E------------------CCCCHHHHHHCCCCC-
T ss_conf 8952999999-78888889871899999987899--8489999--5------------------457866787467543-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf 6557665444210799988999799997688857899999999
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKM 151 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~ 151 (157)
.|+.++. ++|... .|.| +|+.+.+.+.
T Consensus 73 -----------~PTi~lf-~~g~~~-~Y~G---~Rt~~~l~~F 99 (100)
T cd02999 73 -----------FPTILLF-NSTPRV-RYNG---TRTLDSLAAF 99 (100)
T ss_pred -----------CCEEEEE-CCCCEE-CCCC---CCCHHHHHHH
T ss_conf -----------6579996-799660-4789---9898999854
No 102
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.20 E-value=0.013 Score=37.56 Aligned_cols=93 Identities=17% Similarity=0.246 Sum_probs=56.1
Q ss_pred HHHCCCEEEEEEEECCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 986998599996511367663112610-0-00000001233332223444321111222210000000012344589985
Q gi|254780212|r 26 LALGGSKIVLYFYPKDDTSGCTAEAIN-F-SSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSY 103 (157)
Q Consensus 26 ~~l~gk~vvl~f~~~~~tp~C~~e~~~-l-~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~ 103 (157)
+.-.+|+++++++ +.||+.|..-... + .+...++-+.++.++++..++++ ...+++.|
T Consensus 13 Ak~~~K~llVyl~-~~~~~~~~~~~r~v~~~~~V~~~i~~~fV~w~~d~~~~e-------------------g~~~~~~y 72 (114)
T cd02958 13 AKSEKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE-------------------GQRFLQSY 72 (114)
T ss_pred HHHHCCEEEEEEE-CCCCCCHHHHHHHHCCCHHHHHHHHHHEEEEEEECCCHH-------------------HHHHHHHC
T ss_conf 9971988999984-699743899999845888999999711689863169857-------------------99999866
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECC-CCEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 9866665576654442107999889-9979999768885789999999999
Q gi|254780212|r 104 DVWKEKSMFGKKYMGVVRTTFLIDE-KGIIAQIWKPVTLKNHAQSVLKMVK 153 (157)
Q Consensus 104 gv~~~~~~~~~~~~~~~r~tfiid~-~G~I~~~~~~~~~~~~~~eil~~i~ 153 (157)
.+. ..|+..|||| .|.++..+.|... +++.+..|.
T Consensus 73 ~~~------------~~P~i~iidp~tge~v~~~~G~~~---p~~~l~~L~ 108 (114)
T cd02958 73 KVD------------KYPHIAIIDPRTGEVLKVWSGNIT---PEDLLSQLI 108 (114)
T ss_pred CCC------------CCCEEEEEECCCCCEEEEEECCCC---HHHHHHHHH
T ss_conf 999------------989799997899959989868999---899999999
No 103
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.15 E-value=0.0025 Score=41.89 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=28.1
Q ss_pred HCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 6998599996511367663112610000000001233-332223444
Q gi|254780212|r 28 LGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES-TILIGISPD 73 (157)
Q Consensus 28 l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~g-v~vv~is~d 73 (157)
-.+|++.+.+| .+|||.|..--+.|++.. ++++.- -.+|.|+.+
T Consensus 21 ~s~KPlMvIiH-~~~C~~c~aLKk~Fa~s~-eI~~la~e~FVMvNl~ 65 (130)
T cd02960 21 KSNKPLMVIHH-LEDCPHSQALKKAFAEHK-EIQKLAQEDFIMLNLV 65 (130)
T ss_pred HCCCCEEEEEE-CCCCHHHHHHHHHHHCCH-HHHHHHHCCEEEEECC
T ss_conf 72999799986-023867899999860579-8998735576899656
No 104
>KOG0190 consensus
Probab=96.11 E-value=0.0065 Score=39.38 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=41.7
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCH
Q ss_conf 99859999651136766311261000000000123333222344432111122221000-00000
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNL-SITLL 92 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~-~fpil 92 (157)
....+++-|| +.||..|..-.+++.+..+.+.+.|=.+.-.=+|-.+. ...+.++++ .||.|
T Consensus 41 ~~~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v~gyPTl 103 (493)
T KOG0190 41 GHEFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEVRGYPTL 103 (493)
T ss_pred CCCEEEEEEE-CHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCHH-HHHHHHHCCCCCCEE
T ss_conf 6844899987-22234445308278999987530489753687406433-546766057888737
No 105
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=95.88 E-value=0.0034 Score=41.06 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=36.7
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98599996511367663112610000000001233--33222344432111122221000
Q gi|254780212|r 30 GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES--TILIGISPDSIASHKKFHQKHNL 87 (157)
Q Consensus 30 gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~g--v~vv~is~d~~~~~~~~~~~~~~ 87 (157)
.+++++.|| +.||+.|..-.+.+.++...+...+ +.+-.|..+ .+.....++++++
T Consensus 19 ~~~~lV~FY-ApWC~hCk~l~P~~~~~A~~~~~~~~~v~~~~VdC~-~~~n~~lc~~~~I 76 (114)
T cd02992 19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA-DEENVALCRDFGV 76 (114)
T ss_pred CCCEEEEEE-CCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECC-CCCCHHHHHHCCC
T ss_conf 970999998-997831543486999999986343885699998536-5246657866698
No 106
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=95.63 E-value=0.023 Score=35.99 Aligned_cols=74 Identities=18% Similarity=0.330 Sum_probs=48.7
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
++.+||+.|| +.||+.|..-.+.|.++..++. ++.++-|..+.. .+++.|++.
T Consensus 23 ~~~~VvV~f~-~~~~~~C~~l~~~l~~lA~~~~--~vkF~ki~~~~~----------------------~i~~~~~i~-- 75 (113)
T cd02957 23 KGTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA----------------------FLVNYLDIK-- 75 (113)
T ss_pred CCCEEEEEEE-CCCCCCHHHHHHHHHHHHHCCC--CEEEEEEECCCH----------------------HHHHHCCCC--
T ss_conf 9977999997-8999447899899999863289--619999975728----------------------889876987--
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 65576654442107999889997999976888
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVT 140 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~ 140 (157)
..|+..+. ++|+++..+.|..
T Consensus 76 ----------~lPt~l~y-k~G~~v~~lvG~~ 96 (113)
T cd02957 76 ----------VLPTLLVY-KNGELIDNIVGFE 96 (113)
T ss_pred ----------CCCEEEEE-ECCEEEEEEECHH
T ss_conf ----------26689999-9999989998957
No 107
>TIGR01130 ER_PDI_fam protein disulfide isomerases; InterPro: IPR005792 This family represents eukaryotic protein disulphide isomerases retained in the endoplasmic reticulum (ER) and other closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulphide domains, each similar to thioredoxin but with the redox-active disulphide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). ; GO: 0016853 isomerase activity, 0005783 endoplasmic reticulum.
Probab=95.25 E-value=0.012 Score=37.66 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=38.3
Q ss_pred EEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC--C-CCCC
Q ss_conf 07886999788289869985999965113676631126100000000012--3-3332
Q gi|254780212|r 13 FVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE--E-STIL 67 (157)
Q Consensus 13 f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~--~-gv~v 67 (157)
..|..-+=.++-+.+ +|=|||-|| +-||++|..=.+.+.++.+.|++ . +|.|
T Consensus 369 kv~VgkNF~eiV~D~--~KDVL~EFY-APWCGHCK~L~P~Y~eLA~~y~~~~~~~VVI 423 (522)
T TIGR01130 369 KVVVGKNFDEIVLDE--TKDVLVEFY-APWCGHCKKLAPIYEELAEKYKDSAEDDVVI 423 (522)
T ss_pred EEEECCCEEEEEECC--CCCEEEEEE-CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 899815412345779--998899996-6867610021308899999987547987089
No 108
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=95.14 E-value=0.043 Score=34.32 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=77.3
Q ss_pred CCCCCCCCCEEEEC-----CCC-----CEEEHHHHCCCEEEEEEEECCCCCCCCCCCC-CCCCC--CCCCCCCCCCC-CC
Q ss_conf 77986537307886-----999-----7882898699859999651136766311261-00000--00001233332-22
Q gi|254780212|r 4 LSVGDKAPHFVLPS-----NDE-----QEISLLALGGSKIVLYFYPKDDTSGCTAEAI-NFSSL--KADFDEESTIL-IG 69 (157)
Q Consensus 4 l~vG~~aP~f~l~~-----~~g-----~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~-~l~~~--~~~~~~~gv~v-v~ 69 (157)
|++|++.|..-+.+ .++ +.+..++|.||.-||.---| -| ..+|+. .|-+. ..+|.....+- --
T Consensus 23 lq~~q~vp~Vgv~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAG-Rt--saKE~Na~lieaIk~a~fp~~~YQTTTI 99 (184)
T COG3054 23 LQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAG-RT--SAKEKNATLIEAIKSAKFPHDRYQTTTI 99 (184)
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEECCCCHHHCCCHHHHHHHHHC-CC--CHHHHCHHHHHHHHHCCCCHHHCEEEEE
T ss_conf 42388379845344642886276200124526540440322336643-45--0655060899999864698678156677
Q ss_pred CCCCCCC-----CCCCCCCCCCCCCC---CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 3444321-----11122221000000---001234458998598666655766544421079998899979999768885
Q gi|254780212|r 70 ISPDSIA-----SHKKFHQKHNLSIT---LLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTL 141 (157)
Q Consensus 70 is~d~~~-----~~~~~~~~~~~~fp---il~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~ 141 (157)
|+.|+.- -.+.=+++..-.|| +..|.++.+-.+++.-.+ ..++.++|++|+|.++..|.-+
T Consensus 100 iN~DDAi~GtgmFVkssae~~Kke~pwSq~vlD~~gvak~AWqL~e~-----------~SavvVlDk~G~VkfvkeGaLt 168 (184)
T COG3054 100 INTDDAIPGTGMFVKSSAESNKKEYPWSQFVLDSNGVAKNAWQLKEE-----------SSAVVVLDKDGRVKFVKEGALT 168 (184)
T ss_pred ECCCCCCCCCCCEEECCHHHCCCCCCCEEEEECCCHHHHHHHCCCCC-----------CCEEEEECCCCCEEEEECCCCC
T ss_conf 60577633433301132333543387303688453066665355666-----------6359998488868998638755
Q ss_pred CCCHHHHHHHHHHHHC
Q ss_conf 7899999999998509
Q gi|254780212|r 142 KNHAQSVLKMVKSLKQ 157 (157)
Q Consensus 142 ~~~~~eil~~i~~L~~ 157 (157)
..++.+++..|..|-|
T Consensus 169 ~aevQ~Vi~ll~~l~k 184 (184)
T COG3054 169 QAEVQQVIDLLQKLLK 184 (184)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 8999999999997629
No 109
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=94.88 E-value=0.0099 Score=38.24 Aligned_cols=83 Identities=14% Similarity=0.252 Sum_probs=48.0
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
.++.++|.|| +.||+.|..-.+.+.+...+++. .+.+..|..+ .+..+.+.|+|-.
T Consensus 17 ~~~~~~V~Fy-ApWC~hCk~l~P~~~~~a~~~~~-~v~ia~vdc~---------------------~~~~lc~~~~V~~- 72 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCG---------------------DDRMLCRSQGVNS- 72 (101)
T ss_pred CCCEEEEEEE-CCCCHHHHHHCHHHHHHHHHHCC-CEEEEEEECC---------------------CCHHHHCCCEEEE-
T ss_conf 6982999996-88588888646899999998369-6699998525---------------------6933401345676-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHH
Q ss_conf 655766544421079998899979999768885789999999
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLK 150 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~ 150 (157)
-|+.++. ++|+....|.|. +..+.+.+
T Consensus 73 -----------yPTl~~f-~~G~~~~~Y~G~---Rt~~~l~~ 99 (101)
T cd03003 73 -----------YPSLYVF-PSGMNPEKYYGD---RSKESLVK 99 (101)
T ss_pred -----------CCEEEEE-CCCCEEEEEECC---CCHHHHHH
T ss_conf -----------2489998-099701455088---99999995
No 110
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=94.81 E-value=0.017 Score=36.74 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=27.8
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99859999651136766311261000000000123
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE 63 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~ 63 (157)
.++.+++.|| +.||+.|..-.+.+.++...++..
T Consensus 17 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~ 50 (104)
T cd02995 17 SDKDVLVEFY-APWCGHCKALAPIYEELAEKLKGD 50 (104)
T ss_pred CCCCEEEEEE-CCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 9985999997-997756421274499999995279
No 111
>PRK08132 hypothetical protein; Provisional
Probab=94.74 E-value=0.43 Score=28.21 Aligned_cols=115 Identities=24% Similarity=0.309 Sum_probs=66.3
Q ss_pred CCCCCCCCCEEEECCCCCEEEHHHHCC-CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf 779865373078869997882898699-8599996511367663112610000000001233--3322234443211112
Q gi|254780212|r 4 LSVGDKAPHFVLPSNDEQEISLLALGG-SKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES--TILIGISPDSIASHKK 80 (157)
Q Consensus 4 l~vG~~aP~f~l~~~~g~~~~l~~l~g-k~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~g--v~vv~is~d~~~~~~~ 80 (157)
...|..+|+..+.+.+|+..++.++.| .++||.|-...+ + .. ........+ +.++.+.......
T Consensus 428 ~~pG~r~P~~~l~~~~g~~~~l~dl~g~~f~LL~~~~~~~---~-~~------~~~~~~~~~~~~~~~~~~~~~~~~--- 494 (549)
T PRK08132 428 PAPGAVAPDAPLRAADGGPGWLLQLLGGGFTLLLFGSAGD---A-AA------LPQALRGAGIPVRLVLVVPAGAAQ--- 494 (549)
T ss_pred CCCCCCCCCCEEECCCCCEEEHHHHCCCCEEEEEECCCCC---H-HH------HHHHHHHCCCCEEEEEEECCCCCC---
T ss_conf 9997699986017788955877895089779998379752---0-44------566664238844899972376556---
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 22210000000012344589985986666557665444210799988999799997688857899999999998
Q gi|254780212|r 81 FHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 81 ~~~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~ 154 (157)
..-..+.|.++.+++.||+.. -..+||-|||.|.+.|... +.+.+.++|+.
T Consensus 495 ------~~~~~~~D~~g~~~~~~g~~~-------------~~~vLVRPDg~VA~r~~~~----~~~~l~~aL~r 545 (549)
T PRK08132 495 ------AGVDVLEDDDGLAAERYDARP-------------GTVYLIRPDQHVAARWRTP----DAAAVRAALAR 545 (549)
T ss_pred ------CCCCCEECCCCHHHHHHCCCC-------------CEEEEECCCCEEEEECCCC----CHHHHHHHHHH
T ss_conf ------676641257447889728888-------------8099999987467201699----98999999999
No 112
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF; InterPro: IPR014110 This entry includes TraF; a protein that is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically in the F-type system. TraF has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm . Unlike the related protein TrbB (IPR014109 from INTERPRO), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulphide isomerase by complementation of an Escherichia coli DsbA defect . The protein is believed to be involved in pilin assembly . Even more closely related than TrbB is a clade of genes (IPR014111 from INTERPRO), which do contain the CXXC motif, but it is unclear whether these are involved in type-F conjugation systems per se..
Probab=94.51 E-value=0.037 Score=34.75 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=53.9
Q ss_pred HHHHCCC-EEEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 8986998-599996511367663112610000000001-233332223444321--111222210000000012344589
Q gi|254780212|r 25 LLALGGS-KIVLYFYPKDDTSGCTAEAINFSSLKADFD-EESTILIGISPDSIA--SHKKFHQKHNLSITLLADESKEVL 100 (157)
Q Consensus 25 l~~l~gk-~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~-~~gv~vv~is~d~~~--~~~~~~~~~~~~fpil~D~~~~~~ 100 (157)
...+..+ |-++|||+|.. |. -..|+....+|. +.|.+||+||+|... .+...+ .+|. +|..-+
T Consensus 154 I~~l~~~G~Gl~FFYrG~s-p~----s~~~a~~i~~F~~~y~~~vi~vS~DG~~~p~l~n~R---~iPl-----edsgqa 220 (270)
T TIGR02739 154 IEQLSQSGYGLFFFYRGKS-PI----SQKLAPVIQAFAKEYGISVIPVSVDGTLIPELPNSR---LIPL-----EDSGQA 220 (270)
T ss_pred HHHHHHCCCCEEEEECCCC-HH----HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC---CCCC-----CCHHHH
T ss_conf 9999762762478865998-45----678999999888541966756612432054668888---3565-----451357
Q ss_pred HHCCCCCCCCCCCCCCCCCCEEEEEECCCC-EEEEEECCCCC
Q ss_conf 985986666557665444210799988999-79999768885
Q gi|254780212|r 101 KSYDVWKEKSMFGKKYMGVVRTTFLIDEKG-IIAQIWKPVTL 141 (157)
Q Consensus 101 ~~~gv~~~~~~~~~~~~~~~r~tfiid~~G-~I~~~~~~~~~ 141 (157)
...||-. .||+|+|||+- ++.=+-||.-.
T Consensus 221 ~~l~V~~------------~PAl~LV~P~~~~~~PlAYGf~S 250 (270)
T TIGR02739 221 QKLGVKY------------FPALYLVDPKSQKMSPLAYGFIS 250 (270)
T ss_pred HHCCCCC------------CCEEEEEECCCCCEEEEEHHHCC
T ss_conf 6613420------------34256872676722010010204
No 113
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein; InterPro: IPR011903 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different..
Probab=93.88 E-value=0.18 Score=30.50 Aligned_cols=49 Identities=24% Similarity=0.399 Sum_probs=33.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCC----EEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 12344589985986666557665444210799988999----79999768885789999999999850
Q gi|254780212|r 93 ADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKG----IIAQIWKPVTLKNHAQSVLKMVKSLK 156 (157)
Q Consensus 93 ~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G----~I~~~~~~~~~~~~~~eil~~i~~L~ 156 (157)
+|++++.+++|+|-. .|||.|. ++| .|| |+|++.|-.+..+++.|..|-
T Consensus 75 t~e~KE~~ekY~VEr------------vPt~~~~-~~G~kD~~iR--y~G~PaG~Ef~~L~edI~~vS 127 (237)
T TIGR02187 75 TPEDKELVEKYKVER------------VPTTILL-EEGSKDYGIR--YTGIPAGYEFAALIEDIVRVS 127 (237)
T ss_pred CCCCHHHHHHCCCCC------------CCEEEEE-ECCCEEEEEE--EEECCCHHHHHHHHHHHHHHC
T ss_conf 984202342337552------------1068982-0896356788--972154368999999998526
No 114
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.61 E-value=0.18 Score=30.46 Aligned_cols=95 Identities=19% Similarity=0.284 Sum_probs=54.0
Q ss_pred CCCEEEEEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99859999651136766311-26100000000012333322234443211112222100000000123445899859866
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTA-EAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWK 107 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~-e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~ 107 (157)
++|+|.+.|| ++||=.|.. |-..|.+....++-.|+.++-.. |.++. ..+.+.-+.||+..
T Consensus 473 ~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaD---------vT~~~--------p~~~~lLk~~~~~G 534 (569)
T COG4232 473 KAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQAD---------VTAND--------PAITALLKRLGVFG 534 (569)
T ss_pred CCCCEEEEEE-HHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEEE---------ECCCC--------HHHHHHHHHCCCCC
T ss_conf 8996799622-468787676556356759999853786899853---------04899--------89999999728878
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 6655766544421079998899979999768885789999999999850
Q gi|254780212|r 108 EKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLK 156 (157)
Q Consensus 108 ~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L~ 156 (157)
.|+.+..+++|.=..+..+. -+.+.+++.++..+
T Consensus 535 ------------~P~~~ff~~~g~e~~~l~gf---~~a~~~~~~l~~~~ 568 (569)
T COG4232 535 ------------VPTYLFFGPQGSEPEILTGF---LTADAFLEHLERAA 568 (569)
T ss_pred ------------CCEEEEECCCCCCCCCCCCE---ECHHHHHHHHHHHC
T ss_conf ------------98799989999877677660---02789999998733
No 115
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.50 E-value=0.027 Score=35.60 Aligned_cols=50 Identities=22% Similarity=0.399 Sum_probs=37.4
Q ss_pred EEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8828986998599996511367663112610000000001233332223444
Q gi|254780212|r 22 EISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPD 73 (157)
Q Consensus 22 ~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d 73 (157)
....+.+.++.+++.|| +.|||.|....+.+.+..+++.. .+.++.+...
T Consensus 24 ~~~~~~~~~~~~~~~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 24 PLSLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred HHHHHHCCCCEEEEEEE-CCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECC
T ss_conf 00345416871999953-89994299999999999987166-8369999687
No 116
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=93.29 E-value=0.66 Score=27.04 Aligned_cols=128 Identities=14% Similarity=0.203 Sum_probs=67.3
Q ss_pred CCCCCCEEEEC-CCCCEEEHHHH---CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC----------------CCCC
Q ss_conf 86537307886-99978828986---9985999965113676631126100000000012----------------3333
Q gi|254780212|r 7 GDKAPHFVLPS-NDEQEISLLAL---GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE----------------ESTI 66 (157)
Q Consensus 7 G~~aP~f~l~~-~~g~~~~l~~l---~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~----------------~gv~ 66 (157)
|..+|++.+.. .|++++.|.+. .|+|-|++|= |+-.+ ..+...+.++.+.+.+ .=+.
T Consensus 1 G~R~~~~~V~r~aD~~p~~l~~~~~sdGrfri~vFa-gd~~~--~~~~~~l~~l~~~l~~~~s~~~~~~~~~~~~~~~~~ 77 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFA-GDIAP--AQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSVFD 77 (167)
T ss_pred CCCCCCCEEEEECCCCEEECCCCCCCCCCEEEEEEE-CCCCC--CCHHHHHHHHHHHHHCCCCHHHEECCCCCCCCCCEE
T ss_conf 963788358886479882510313479858999995-78876--331779999999870866425310677799786379
Q ss_pred CCCCCCCC---------CCCCCCCCCCCCCCC-CCHHHH------HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 22234443---------211112222100000-000123------44589985986666557665444210799988999
Q gi|254780212|r 67 LIGISPDS---------IASHKKFHQKHNLSI-TLLADE------SKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKG 130 (157)
Q Consensus 67 vv~is~d~---------~~~~~~~~~~~~~~f-pil~D~------~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G 130 (157)
++.|...+ |+..+.+.+....++ -+.+|. ++.+.+.|||-.... ++.||-|||
T Consensus 78 ~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~d~~kv~~dd~~~~~~~~~ay~~~GId~~~G-----------avVVVRPD~ 146 (167)
T cd02979 78 VVTIHAAPRREIELLDLPAVLRPFGEKKGWDYEKIYADDDSYHEGHGDAYEKYGIDPERG-----------AVVVVRPDQ 146 (167)
T ss_pred EEEEECCCCCCCCHHHCCHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCE-----------EEEEECCCC
T ss_conf 999965787633265686744676512574320188146545566432798749786643-----------899988997
Q ss_pred EEEEEECCCCCCCCHHHHHHHH
Q ss_conf 7999976888578999999999
Q gi|254780212|r 131 IIAQIWKPVTLKNHAQSVLKMV 152 (157)
Q Consensus 131 ~I~~~~~~~~~~~~~~eil~~i 152 (157)
.|-++..- ++++++-+..
T Consensus 147 yVg~v~~l----dd~~~l~~yF 164 (167)
T cd02979 147 YVALVGPL----DDVEALEAYF 164 (167)
T ss_pred CEEEEECC----CHHHHHHHHH
T ss_conf 27998760----2088999886
No 117
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=92.68 E-value=0.36 Score=28.64 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=48.7
Q ss_pred HHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 89869985999965113676631126100000000012333322234443211112222100000000123445899859
Q gi|254780212|r 25 LLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYD 104 (157)
Q Consensus 25 l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~g 104 (157)
++++++..-+++|.-.+.|+.|. ++.+|-+...++.++ +. .+.++ .+.+.+.+++||
T Consensus 16 l~~l~~pV~ivvF~~~~~c~yc~-~t~~ll~ela~lsdK-i~---------------~~~~~------~~~d~e~a~k~g 72 (113)
T cd02975 16 FKEMKNPVDLVVFSSKEGCQYCE-VTKQLLEELSELSDK-LK---------------LEIYD------FDEDKEKAEKYG 72 (113)
T ss_pred HHHCCCCEEEEEEECCCCCCCHH-HHHHHHHHHHHHCCC-EE---------------EEEEC------CCCCHHHHHHHC
T ss_conf 98579986999995798871169-999999999974885-38---------------99966------766979999839
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCC---CEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 8666655766544421079998899---979999768885789999999999
Q gi|254780212|r 105 VWKEKSMFGKKYMGVVRTTFLIDEK---GIIAQIWKPVTLKNHAQSVLKMVK 153 (157)
Q Consensus 105 v~~~~~~~~~~~~~~~r~tfiid~~---G~I~~~~~~~~~~~~~~eil~~i~ 153 (157)
|-. .|++.+++.+ +.|| |+|.+.+-.+...+++|-
T Consensus 73 Ver------------~Pti~i~~~~~~~~~ir--f~GiP~G~Ef~slie~Ii 110 (113)
T cd02975 73 VER------------VPTTIFLQDGGKDGGIR--YYGLPAGYEFASLIEDIV 110 (113)
T ss_pred CEE------------CCEEEEECCCCCCCCEE--EEECCCCHHHHHHHHHHH
T ss_conf 814------------65799974888755269--950786276999999998
No 118
>KOG0908 consensus
Probab=92.31 E-value=0.06 Score=33.45 Aligned_cols=46 Identities=26% Similarity=0.404 Sum_probs=33.8
Q ss_pred HHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8986998599996511367663112610000000001233332223444
Q gi|254780212|r 25 LLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPD 73 (157)
Q Consensus 25 l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d 73 (157)
|+.-.+|.+++-|+ ++||++|..-.+.|.++..+|. +..++-|.+|
T Consensus 16 ls~ag~k~v~Vdft-a~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd 61 (288)
T KOG0908 16 LSAAGGKLVVVDFT-ASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVD 61 (288)
T ss_pred HHCCCCEEEEEEEE-ECCCCHHHHHHHHHHHHHHHCC--CCEEEEEEHH
T ss_conf 40258618999987-1455327766057887654176--6389997478
No 119
>pfam07976 Phe_hydrox_dim Phenol hydroxylase, C-terminal dimerization domain. Phenol hydroxylase acts a homodimer, to hydroxylates phenol to catechol or similar product. The enzyme is comprised of three domains. The first two domains from the active site. The third domain, this domain, is involved in forming the dimerization interface. The domain adopts a thioredoxin-like fold.
Probab=91.47 E-value=0.35 Score=28.71 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=56.4
Q ss_pred CCCCCCCCCCEEEEC-CCCCEEEHHHH---CCCEEEEEEEECCCCC-CCCCCCCCCCCCCC-------CCCCC------C
Q ss_conf 777986537307886-99978828986---9985999965113676-63112610000000-------00123------3
Q gi|254780212|r 3 SLSVGDKAPHFVLPS-NDEQEISLLAL---GGSKIVLYFYPKDDTS-GCTAEAINFSSLKA-------DFDEE------S 64 (157)
Q Consensus 3 ~l~vG~~aP~f~l~~-~~g~~~~l~~l---~gk~vvl~f~~~~~tp-~C~~e~~~l~~~~~-------~~~~~------g 64 (157)
.|.+|..+|++.+.. .||+++.|.+. .|+|-|++|- |+..+ .....+..|.+..+ .|... -
T Consensus 29 ~l~~G~R~~sa~V~r~aDa~p~~L~~~l~sdGrwRi~vFa-gd~~~~~~~~~l~~l~~~L~~~~s~l~r~~~~~~~~ds~ 107 (169)
T pfam07976 29 GLPPGRRLPSAKVVRQADANPVHLGHDLPSDGRFRIYVFA-GDLSLPEQLSRLDALAEYLESPDSPLRRFTPKGADIDSV 107 (169)
T ss_pred CCCCCEECCCCEEEEECCCCEEEHHHHCCCCCCEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCC
T ss_conf 8888436588347885479782142023489977999975-788765578999999998848312665138788886763
Q ss_pred CCCCCCCC---------CCCCCCCCCCCCCCCCCC-CHHHH------HHHHHHHCCC
Q ss_conf 33222344---------432111122221000000-00123------4458998598
Q gi|254780212|r 65 TILIGISP---------DSIASHKKFHQKHNLSIT-LLADE------SKEVLKSYDV 105 (157)
Q Consensus 65 v~vv~is~---------d~~~~~~~~~~~~~~~fp-il~D~------~~~~~~~~gv 105 (157)
++++.|.. |-|+..+.+..+++++|- +.+|. .+.+.+.||+
T Consensus 108 id~~~V~~~~r~~vel~dlP~~f~P~~~~~g~dy~kv~~dd~~~~~~~g~~y~~~GI 164 (169)
T pfam07976 108 IDVLLVHQSPRDEVELEDLPELLRPFDGKLGLDYEKVYADDESYHEGHGDAYEKYGI 164 (169)
T ss_pred EEEEEEECCCCCCCCHHHCCHHHCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCC
T ss_conf 217999648856178657948448888888865363670465556577645765088
No 120
>PTZ00102 disulphide isomerase; Provisional
Probab=91.28 E-value=0.084 Score=32.54 Aligned_cols=35 Identities=14% Similarity=0.341 Sum_probs=28.6
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998599996511367663112610000000001233
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES 64 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~g 64 (157)
.+|.++|.|| +.||+.|..-.+.+.++.+.|++.+
T Consensus 376 ~~kdvlv~fy-APWCghCk~l~P~~~~la~~~~~~~ 410 (479)
T PTZ00102 376 SGKDVLLEIY-APWCGHCKNLEPVYTDLGEKLKDND 410 (479)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8988899998-9877567764489999999845799
No 121
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=91.25 E-value=0.067 Score=33.14 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=33.8
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5999965113676631126100000000012333322234443
Q gi|254780212|r 32 KIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDS 74 (157)
Q Consensus 32 ~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~ 74 (157)
.+++.|| +.|||.|..-.+-++++..+|...++++.-|.++-
T Consensus 49 ~WLV~F~-A~W~~~C~~~apifaelS~~y~~~~lkFgkvDv~r 90 (152)
T cd02962 49 TWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR 90 (152)
T ss_pred EEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 9999992-58887888778999999999653786699987663
No 122
>pfam01216 Calsequestrin Calsequestrin.
Probab=90.63 E-value=1.5 Score=24.82 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=13.5
Q ss_pred CEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 85999965113676631126100
Q gi|254780212|r 31 SKIVLYFYPKDDTSGCTAEAINF 53 (157)
Q Consensus 31 k~vvl~f~~~~~tp~C~~e~~~l 53 (157)
..++++|| .||+.|..-.+++
T Consensus 29 d~l~v~f~--ap~g~~k~~~~~y 49 (350)
T pfam01216 29 EVLALLYH--EPVSDDKASQRQF 49 (350)
T ss_pred CEEEEEEE--CCCCCCHHHHHHH
T ss_conf 58999987--8986555553667
No 123
>KOG0191 consensus
Probab=88.59 E-value=0.15 Score=30.96 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=33.3
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNL 87 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~ 87 (157)
.++..++.|| ..||+.|..-.+.+.++...++. .+.+..|..+ .+++.++++++
T Consensus 46 ~~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~---~~~~~~~~y~i 99 (383)
T KOG0191 46 DDSPWLVEFY-APWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCD---EHKDLCEKYGI 99 (383)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEECCC---CCHHHHHHCCC
T ss_conf 6885599998-88776367767999999986532-5037896574---48889986287
No 124
>KOG0190 consensus
Probab=87.68 E-value=0.21 Score=30.05 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=27.7
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99859999651136766311261000000000123
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE 63 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~ 63 (157)
.+|-|+|-|| +-||+.|..-.+.+.++.+.|++.
T Consensus 383 e~KdVLvEfY-APWCgHCk~laP~yeeLAe~~k~~ 416 (493)
T KOG0190 383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 7876799970-754345565547999999996589
No 125
>PRK10877 thiol:disulfide interchange protein DsbC; Provisional
Probab=87.45 E-value=1.1 Score=25.68 Aligned_cols=104 Identities=6% Similarity=0.065 Sum_probs=52.9
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCC-CCCCCCCC----------CCCCC
Q ss_conf 99859999651136766311261000000000123333222-------34443211-11222210----------00000
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIG-------ISPDSIAS-HKKFHQKH----------NLSIT 90 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~-------is~d~~~~-~~~~~~~~----------~~~fp 90 (157)
.+|.+|.+|- =..||+|.+--.+ .+++.+.|++|.- +..++... ..-||.+. +-+.+
T Consensus 106 ~~k~~i~VFT-DpdCpYCrklh~e----l~~~~~~gItV~y~~fPr~g~~~~s~~k~~~iWCa~Dr~~A~~~~~~g~~~~ 180 (232)
T PRK10877 106 QEKHVITVFT-DITCGYCHKLHEQ----MKDYNALGITVRYLAFPRQGLESQAEKDMKSIWCAKDKNKAFDDAMAGKDVS 180 (232)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHH----HHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf 8757999996-9998789999999----9861026749999960455689537999999985478999999997599999
Q ss_pred -CH----HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf -00----12344589985986666557665444210799988999799997688857899999999998509
Q gi|254780212|r 91 -LL----ADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLKQ 157 (157)
Q Consensus 91 -il----~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L~~ 157 (157)
-- .+.+.++++.+||-+ .|+. |=+||+.. .|+- .++++++.|++.||
T Consensus 181 ~~~C~~pv~~~~~lg~~lGV~G------------TPti--v~~dG~~v---pGy~---pa~~L~~~L~~~~k 232 (232)
T PRK10877 181 PASCDVDIADHYALGVQLGVQG------------TPAI--VLSNGTLV---PGYQ---GPKEMKAFLDEHQK 232 (232)
T ss_pred CCCCCCHHHHHHHHHHHCCCCC------------CCEE--EECCCCCC---CCCC---CHHHHHHHHHHCCC
T ss_conf 2227885999999999839986------------7759--94899798---7988---99999999986559
No 126
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.71 E-value=2.2 Score=23.78 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=57.8
Q ss_pred CCCEEEEEEEECCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99859999651136766311---261000000000123333222344432111122221000000001234458998598
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTA---EAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDV 105 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~---e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv 105 (157)
.+|+.+|.|= ...|++|.. ++..-.++.+-+.. .+.++-+.......+.-..... ..+-...++++.|+|
T Consensus 41 ~~Kylllmfe-s~~C~yC~~fKKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~~g~k-----ee~~s~~ELa~kf~v 113 (182)
T COG2143 41 NDKYLLLMFE-SNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFKVGDK-----EEKMSTEELAQKFAV 113 (182)
T ss_pred CCCEEEEEEC-CCCCHHHHHHHHHHCCHHHHHHHHHH-CEEEEEEEECCCCCEEEECCCE-----EEEECHHHHHHHHCC
T ss_conf 6758999975-89970799998862463879999762-7589999831576267412765-----455439999987355
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 666655766544421079998899979999768885789999999999
Q gi|254780212|r 106 WKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVK 153 (157)
Q Consensus 106 ~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~ 153 (157)
-. .|+.+.-|++|+-..-..|.-++..+-.|++.|.
T Consensus 114 rs------------tPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa 149 (182)
T COG2143 114 RS------------TPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVA 149 (182)
T ss_pred CC------------CCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 56------------8659998588977986478789899999999987
No 127
>PRK06184 hypothetical protein; Provisional
Probab=86.66 E-value=3.1 Score=22.89 Aligned_cols=104 Identities=21% Similarity=0.229 Sum_probs=60.1
Q ss_pred CCCCCCCCCCEEEECCCCCEEEHHHH-CC-CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77798653730788699978828986-99-85999965113676631126100000000012333322234443211112
Q gi|254780212|r 3 SLSVGDKAPHFVLPSNDEQEISLLAL-GG-SKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKK 80 (157)
Q Consensus 3 ~l~vG~~aP~f~l~~~~g~~~~l~~l-~g-k~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~ 80 (157)
.+..|+.+|+..+.+.+|...++.++ .| .++||.|-+.. .... .. .+..+..+..+.
T Consensus 389 ~~~~G~r~p~~~~~~~~~~~~~l~d~~~g~~f~ll~~~~~~------~~~~-------~~--~~~~~~~~~~~~------ 447 (503)
T PRK06184 389 GLQAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAFGAGA------AAID-------AR--PGLRIHRIGVRG------ 447 (503)
T ss_pred CCCCCCCCCCCEEECCCCCCEEHHHHHCCCCEEEEEECCCC------CCCC-------CC--CCCEEEEECCCC------
T ss_conf 77686608997557788981365785168846999836874------3334-------45--686599990677------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 22210000000012344589985986666557665444210799988999799997688857899999999998
Q gi|254780212|r 81 FHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 81 ~~~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~ 154 (157)
-+.|..+.+...||+.. ...+||-|||.|-++.. ..+.+.+.+++..
T Consensus 448 ----------~~~d~~~~~~~~~g~~~-------------~~~vLVRPDg~Va~~~~----~~~~~~l~~~l~r 494 (503)
T PRK06184 448 ----------DLIDDGGHFRDAYGLAP-------------GTLVLVRPDGYVGAIAD----ADDANALEAYLAR 494 (503)
T ss_pred ----------CEECCCCHHHHHHCCCC-------------CEEEEECCCCEEEEEEC----CCCHHHHHHHHHH
T ss_conf ----------45557517889728788-------------80999999757899944----8998999999998
No 128
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=85.36 E-value=0.25 Score=29.65 Aligned_cols=70 Identities=9% Similarity=0.128 Sum_probs=43.2
Q ss_pred CCCEEEHHHH--CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCH
Q ss_conf 9978828986--99859999651136766311261000000000123333222344432111122221000-00000
Q gi|254780212|r 19 DEQEISLLAL--GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNL-SITLL 92 (157)
Q Consensus 19 ~g~~~~l~~l--~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~-~fpil 92 (157)
.|....+..+ ....+++.|| +.||+.|..-.+++.+..+.+++. +.+.+|+...++..= .+++++ .||.+
T Consensus 16 ~G~l~~~~~~~~~sei~lV~FY-APWC~hc~~~~pe~~~~A~~l~~~-v~f~aVnC~~~~~~C--r~qy~v~~fP~i 88 (113)
T cd03006 16 KGQLDYAEELRTDAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQGKC--RKQKHFFYFPVI 88 (113)
T ss_pred CCCHHHHHHHHHCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHCC-EEEEEEECCCCCCHH--HCCCCCCCCCEE
T ss_conf 7867888987640737999998-886788999899999999985467-489999478884521--153575658789
No 129
>pfam04592 SelP_N Selenoprotein P, N terminal region. SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma. It is thought to be glycosylated. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage. The promoter structure of bovine SelP suggest that it may be involved in countering heavy metal intoxication, and may also have a developmental function. The N-terminal region of SelP can exist independently of the C terminal region. Zebrafish selenoprotein Pb lacks the C terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported. N-terminal region contains a conserved SecxxCys motif, which is similar to the
Probab=84.70 E-value=0.83 Score=26.42 Aligned_cols=127 Identities=14% Similarity=0.259 Sum_probs=69.2
Q ss_pred CCCCCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCC
Q ss_conf 865373078869997882898699859999651136766311261000000000123333---22234443211112222
Q gi|254780212|r 7 GDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTI---LIGISPDSIASHKKFHQ 83 (157)
Q Consensus 7 G~~aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~---vv~is~d~~~~~~~~~~ 83 (157)
-++.|.|++.+.+ -.....|+.+|+..- -+.|-.|-.|...|.++..++++.|.. .+.|+.....+...|..
T Consensus 7 Ck~pP~Wsi~~~~----PMlns~G~VtVVAlL-QASCy~CllqasrLedLR~Kle~qG~~nIsy~VVN~q~~~Sr~~~~~ 81 (238)
T pfam04592 7 CKPPPEWSIGDQE----PMLNSLGKVTVVALL-QASUYFCLLQASRLEDLRVKLENQGYTNISYMVVNHQGSSSRLKYHH 81 (238)
T ss_pred CCCCCCCCCCCCC----HHHHCCCCEEEEEEH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 4699977538867----467537867998603-22357899999876899999986798743799973765466677999
Q ss_pred -CCCC--CCCCHH-HHHH-HHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCC--CCCCHHHHHHH
Q ss_conf -1000--000001-2344-589985986666557665444210799988999799997-6888--57899999999
Q gi|254780212|r 84 -KHNL--SITLLA-DESK-EVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIW-KPVT--LKNHAQSVLKM 151 (157)
Q Consensus 84 -~~~~--~fpil~-D~~~-~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~-~~~~--~~~~~~eil~~ 151 (157)
+..+ .||+.. |+.. .+...++- ... -.+|-|.=|++.+-. -++. .-+.+++.++.
T Consensus 82 Lk~~vse~ipvYqq~~~q~DVW~~L~G------~KD-------DfLIYDRCGrL~yHl~lPySfL~~pyVEeAIk~ 144 (238)
T pfam04592 82 LKRRVSEHIPVYQQEENQPDVWTLLNG------NKD-------DFLIYDRCGRLTYHLGLPYSFLTFPYVEEAIKI 144 (238)
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHCC------CCC-------CEEEEECCCCEEEECCCCHHHHCCHHHHHHHHH
T ss_conf 998622677622347666567887268------867-------578885247567740675787548179999999
No 130
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=83.80 E-value=0.65 Score=27.10 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=32.9
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99651136766311261000000000123333222344432111122
Q gi|254780212|r 35 LYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKF 81 (157)
Q Consensus 35 l~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~ 81 (157)
+.|| ..|||.|......+++. +....++.++.++.+......++
T Consensus 2 ~~f~-~~~~~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 45 (69)
T cd01659 2 VLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKE 45 (69)
T ss_pred CEEE-CCCCHHHHHHHHHHHHH--HHHCCCCEEEEEECCCCHHHHHH
T ss_conf 4799-98887889767999999--97779987999989998678888
No 131
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=82.52 E-value=0.89 Score=26.25 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=33.6
Q ss_pred HHHHCCCEEEEEEEE------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 898699859999651------13676631126100000000012333322234443
Q gi|254780212|r 25 LLALGGSKIVLYFYP------KDDTSGCTAEAINFSSLKADFDEESTILIGISPDS 74 (157)
Q Consensus 25 l~~l~gk~vvl~f~~------~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~ 74 (157)
+.+++||++.+.|+- .+|||-|..--+.+.+..+... .+..++-+.+.+
T Consensus 16 ~~~~~~k~ifi~F~g~~d~~G~SWCPDCv~AePvv~~~~~~~~-~~~~~i~v~VG~ 70 (119)
T cd02952 16 LKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGD 70 (119)
T ss_pred HHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCEEEEEEECC
T ss_conf 9970698799999677699969479008771689999997189-886699999768
No 132
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=79.67 E-value=4.2 Score=22.13 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9985999965113676631126100000000012
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~ 62 (157)
.++..|+.|. --.||.|..-.+.+.+++.++.+
T Consensus 4 ~A~v~ivef~-d~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 4 NGDVTIVEFF-DYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999988-99986378888999999985887
No 133
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=79.60 E-value=6.1 Score=21.13 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=15.2
Q ss_pred CCCCCCCEEEECCCCCEEEHHHHCCC-EEEEEE
Q ss_conf 98653730788699978828986998-599996
Q gi|254780212|r 6 VGDKAPHFVLPSNDEQEISLLALGGS-KIVLYF 37 (157)
Q Consensus 6 vG~~aP~f~l~~~~g~~~~l~~l~gk-~vvl~f 37 (157)
.|..+|+..+...+|....+.++.|. +++|.|
T Consensus 416 ~G~~~p~~~~~~~~g~~~~ld~l~g~~f~ll~~ 448 (554)
T PRK06183 416 VGTLFPQPRVRLEDGDRVLLDDVVGPGFAVLGW 448 (554)
T ss_pred CCCCCCCCCEECCCCCCCCHHHHCCCCEEEEEC
T ss_conf 866879984445899741388955796599844
No 134
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=79.46 E-value=6.1 Score=21.10 Aligned_cols=137 Identities=9% Similarity=0.141 Sum_probs=69.8
Q ss_pred CCCCCCCCCCCEEEEC-CCCCEEEHHHH---CCCEEEEEEEECCCCC-CCCCCCCCCCCCCCC--------CCCCC----
Q ss_conf 7777986537307886-99978828986---9985999965113676-631126100000000--------01233----
Q gi|254780212|r 2 TSLSVGDKAPHFVLPS-NDEQEISLLAL---GGSKIVLYFYPKDDTS-GCTAEAINFSSLKAD--------FDEES---- 64 (157)
Q Consensus 2 ~~l~vG~~aP~f~l~~-~~g~~~~l~~l---~gk~vvl~f~~~~~tp-~C~~e~~~l~~~~~~--------~~~~g---- 64 (157)
+.+.+|..+|+..+.. .+++++.|.+. .|+|-|+.|- |+..+ .+...+..+.+.... |...+
T Consensus 460 ~~~~~G~R~~~~~v~r~~d~~~~~l~~~~~~dgr~ri~vFa-g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 538 (634)
T PRK08294 460 TGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYVFA-DADAPGAAGSALDRLCEWLANSPDSPLRRFTPSGADID 538 (634)
T ss_pred CCCCCCEECCCCCEEEECCCCEEEECCCCCCCCCEEEEEEC-CCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC
T ss_conf 47876010599832556478600405645789987999964-87776524578999999987587760111277878854
Q ss_pred --CCCCCCCCCC---------CCCCCCCCCCCCC-CCC-CHHHH--HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf --3322234443---------2111122221000-000-00123--4458998598666655766544421079998899
Q gi|254780212|r 65 --TILIGISPDS---------IASHKKFHQKHNL-SIT-LLADE--SKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEK 129 (157)
Q Consensus 65 --v~vv~is~d~---------~~~~~~~~~~~~~-~fp-il~D~--~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~ 129 (157)
+.+.+|...+ |+....+...+++ .+. +.+|. ...+.+.||+-... -++.||-||
T Consensus 539 ~~~~~~~v~~~~~~~~~~~~~p~~~~p~~~~~~~~d~~~~~~~d~~~~~ay~~~Gid~~~-----------G~vVVvRPD 607 (634)
T PRK08294 539 AVIDVRAVFQQPHRELDIEAVPALLLPRKGRFGLTDYEKVFCADKPGSDIFDLRGIDRED-----------GCVVVVRPD 607 (634)
T ss_pred CEEEEEEEECCCCCCCCHHHCHHHHCCCCCCCCCCCHHHEECCCCCCCCHHHHCCCCCCC-----------EEEEEECCC
T ss_conf 258999995278763006437064467767657643876123676523176644848776-----------479999999
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 9799997688857899999999998
Q gi|254780212|r 130 GIIAQIWKPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 130 G~I~~~~~~~~~~~~~~eil~~i~~ 154 (157)
|.|-++.. -.+.+++-+.++.
T Consensus 608 ~yVg~v~~----l~~~~~l~~yF~~ 628 (634)
T PRK08294 608 QYVANVLP----LDATAELAAFFAG 628 (634)
T ss_pred CEEEEEEC----CCCHHHHHHHHHH
T ss_conf 70499866----7668899999986
No 135
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=78.90 E-value=3.9 Score=22.33 Aligned_cols=34 Identities=9% Similarity=0.264 Sum_probs=22.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 34458998598666655766544421079998899979999768885
Q gi|254780212|r 95 ESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTL 141 (157)
Q Consensus 95 ~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~ 141 (157)
.+.++.+.+|+- ..|+.|.-|.+|+++.+ .|.+.
T Consensus 209 ~n~~Lm~~lGi~------------GTPaIvy~d~~g~~~~~-~GlP~ 242 (253)
T PRK11657 209 DNQKLMDDLGAN------------ATPAIYYMDKDGTLQQA-VGLPD 242 (253)
T ss_pred HHHHHHHHCCCC------------CCCEEEEECCCCCEEEE-CCCCC
T ss_conf 999999983998------------36669998799988886-18999
No 136
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=78.48 E-value=1.9 Score=24.23 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=59.9
Q ss_pred CCCCCC-----CEEEECCCCCEEEHHHHCCCEEEEEEE--ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---
Q ss_conf 986537-----307886999788289869985999965--1136766311261000000000123333222344432---
Q gi|254780212|r 6 VGDKAP-----HFVLPSNDEQEISLLALGGSKIVLYFY--PKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSI--- 75 (157)
Q Consensus 6 vG~~aP-----~f~l~~~~g~~~~l~~l~gk~vvl~f~--~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~--- 75 (157)
.|.+|| .-+-.+.+|+.|+++. ||..||=|. -|+ +=|+-+-.|+-+| +++|+.+=-|..|+-
T Consensus 92 p~~~APkPkklststktinGkk~~p~K--gk~~ViMfVGLQGa---GKTTtctKLA~YY---k~rGfK~~lvCADTFRAG 163 (453)
T TIGR01425 92 PGVEAPKPKKLSTSTKTINGKKFTPKK--GKSSVIMFVGLQGA---GKTTTCTKLAYYY---KRRGFKPALVCADTFRAG 163 (453)
T ss_pred CCCCCCCCCCCCCCCEEECCCEEECCC--CCCEEEEEEECCCC---CHHHHHHHHHHHH---HCCCCCEEEECCCCCCCC
T ss_conf 632346875333211010350341156--88215888621488---7156687877776---326643256517754232
Q ss_pred --CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE------EEEECCCCEEE
Q ss_conf --11112222100000000123445899859866665576654442107------99988999799
Q gi|254780212|r 76 --ASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRT------TFLIDEKGIIA 133 (157)
Q Consensus 76 --~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~------tfiid~~G~I~ 133 (157)
+-++.-+.+=++|| ||.|.|....-....|+.+- .+|||-.|+=+
T Consensus 164 AFdQLkqNA~kA~iPF-------------YGsy~E~DPVkiA~EGv~~Fk~E~~diIivDTSGRHk 216 (453)
T TIGR01425 164 AFDQLKQNATKAKIPF-------------YGSYLESDPVKIASEGVEKFKKEKFDIIIVDTSGRHK 216 (453)
T ss_pred HHHHHHHHHHHCCCCC-------------CCCCCCCCCEEEECCCHHHHHCCCCCEEEEECCCCCH
T ss_conf 4899987476448971-------------2010489870780020113221278479983798732
No 137
>KOG1731 consensus
Probab=77.12 E-value=0.32 Score=28.95 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=32.9
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5999965113676631126100000000012-3333-2223444321111222210000
Q gi|254780212|r 32 KIVLYFYPKDDTSGCTAEAINFSSLKADFDE-ESTI-LIGISPDSIASHKKFHQKHNLS 88 (157)
Q Consensus 32 ~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~-~gv~-vv~is~d~~~~~~~~~~~~~~~ 88 (157)
..++-|| .+||+.|+.-.+.+++...+.++ +.+. |.+|.. -.+...+.|++++++
T Consensus 59 ~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdC-A~~~N~~lCRef~V~ 115 (606)
T KOG1731 59 AKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDC-ADEENVKLCREFSVS 115 (606)
T ss_pred HHHHHHH-HHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEEEEC-CCHHHHHHHHHCCCC
T ss_conf 6899998-76525555305689999888750334058888603-203223567616887
No 138
>KOG4614 consensus
Probab=75.75 E-value=4.3 Score=22.05 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=27.1
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 07999889997999976888578999999999985
Q gi|254780212|r 121 RTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 121 r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L 155 (157)
-.+|+||+.|+||+.-.|..++...+.++...+-|
T Consensus 249 GyV~L~D~s~kIRW~g~G~aTp~Eve~L~~~~k~L 283 (287)
T KOG4614 249 GYVLLLDKSGKIRWQGFGTATPEEVEQLLSCTKLL 283 (287)
T ss_pred EEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 78999716741777635899879999999999987
No 139
>TIGR02200 GlrX_actino Glutaredoxin-like protein; InterPro: IPR011915 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif..
Probab=75.25 E-value=1.4 Score=25.07 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=25.4
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99651136766311261000000000123333222344432111122221
Q gi|254780212|r 35 LYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQK 84 (157)
Q Consensus 35 l~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~ 84 (157)
|..|..+|||+|..-+..|+ +..|+.-=.|.++..+...+|...
T Consensus 2 ~~vY~~~WCgyC~~l~~~Lk------~~~G~~Ye~~di~~d~~AA~~v~s 45 (78)
T TIGR02200 2 VTVYATTWCGYCAQLMRTLK------DKDGAAYEVVDIEEDEEAADYVKS 45 (78)
T ss_pred EEEEECCCCCHHHHHHHHHH------HCCCCCCEEEECCCCCCCCCEEEE
T ss_conf 04640699806789987534------307995114524548475528665
No 140
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family; InterPro: IPR011911 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon . Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system..
Probab=70.93 E-value=1.1 Score=25.69 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=22.5
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 965113676631126100000000012333322234443
Q gi|254780212|r 36 YFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDS 74 (157)
Q Consensus 36 ~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~ 74 (157)
-.|...|||.| ++..+-|+.+|+....+.+..
T Consensus 3 ~vYt~~~Cp~C-------~~aK~yL~~~gv~f~~~dV~~ 34 (79)
T TIGR02196 3 KVYTTPWCPPC-------KKAKEYLTSKGVAFEEIDVEK 34 (79)
T ss_pred EEEEECCCCCH-------HHHHHHHHHCCCCEEEECCCC
T ss_conf 68740898207-------899999995499457634336
No 141
>KOG3425 consensus
Probab=66.29 E-value=4.6 Score=21.87 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=32.5
Q ss_pred HHHH-CCCEEEEEEEEC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8986-998599996511-------367663112610000000001233332223444321
Q gi|254780212|r 25 LLAL-GGSKIVLYFYPK-------DDTSGCTAEAINFSSLKADFDEESTILIGISPDSIA 76 (157)
Q Consensus 25 l~~l-~gk~vvl~f~~~-------~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~ 76 (157)
++++ .|+.+.+.|+-+ +|||.|..-.+-+.+...... .++.+|-+-+.+-+
T Consensus 19 ~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG~rp 77 (128)
T KOG3425 19 LKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVGNRP 77 (128)
T ss_pred HHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCC
T ss_conf 998727866999996566888898378218776389999997387-76179999706877
No 142
>pfam06110 DUF953 Eukaryotic protein of unknown function (DUF953). This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=64.30 E-value=4.1 Score=22.16 Aligned_cols=48 Identities=13% Similarity=0.076 Sum_probs=31.4
Q ss_pred HHCCCEEEEEEEE------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8699859999651------136766311261000000000123333222344432
Q gi|254780212|r 27 ALGGSKIVLYFYP------KDDTSGCTAEAINFSSLKADFDEESTILIGISPDSI 75 (157)
Q Consensus 27 ~l~gk~vvl~f~~------~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~ 75 (157)
+-+|+++.++|+- .+|||-|..--+-+.+..+... .+..++-+.+.+-
T Consensus 16 ~~~~~~vfv~F~g~kd~~G~SWCPDCv~AePvi~~~f~~~~-~~~~~i~v~VG~r 69 (119)
T pfam06110 16 ENGSKPIFALFTGSKDTTGESWCPDCVRAEPVIREALKHAP-EDCHFIYVDVGDR 69 (119)
T ss_pred HHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCC
T ss_conf 73798299999777799979369007661488999998388-8857999997682
No 143
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent; InterPro: IPR004508 This enzyme, involved in the assimilation of inorganic sulphate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulphate (APS) over 3'-phosphoadenylylsulphate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement Escherichia coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.; GO: 0016671 oxidoreductase activity acting on sulfur group of donors disulfide as acceptor, 0019421 sulfate reduction APS pathway.
Probab=61.68 E-value=2.7 Score=23.28 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=57.9
Q ss_pred HHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 89869985999965113676631126100000000012333322234443211112222100000000123445899859
Q gi|254780212|r 25 LLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYD 104 (157)
Q Consensus 25 l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~g 104 (157)
|..-+..|+|+ .| +.||+.|...-..+.++.+++.-.|+.+--.-.|..+ ++|+.+. +
T Consensus 373 le~r~e~W~vv-ly-aPWC~fCqame~sy~ela~klaG~G~kv~kf~adG~q--k~fa~qe-l----------------- 430 (469)
T TIGR00424 373 LEERKEAWLVV-LY-APWCPFCQAMEASYVELAEKLAGSGVKVAKFRADGDQ--KEFAKQE-L----------------- 430 (469)
T ss_pred HHCCCCCEEEE-EE-CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHH-H-----------------
T ss_conf 53056735899-81-5610357776566999999853798323322046226--7888775-4-----------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 8666655766544421079998899979999768885789999999999850
Q gi|254780212|r 105 VWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLK 156 (157)
Q Consensus 105 v~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L~ 156 (157)
..+..|+. ++=|+.--+.+-|+. ..++++.+...+..|+
T Consensus 431 -----------ql~s~Pti-l~fPk~~~~~ikyPs-e~rdv~sl~~f~n~~r 469 (469)
T TIGR00424 431 -----------QLGSFPTI-LLFPKRSSRPIKYPS-EKRDVDSLMSFVNLLR 469 (469)
T ss_pred -----------HCCCCCEE-EEECCCCCCCCCCCC-CHHHHHHHHHHHHHHC
T ss_conf -----------22576638-880266776544872-0011789999998609
No 144
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=61.29 E-value=5 Score=21.67 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=15.9
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 899979999768885789999999999850
Q gi|254780212|r 127 DEKGIIAQIWKPVTLKNHAQSVLKMVKSLK 156 (157)
Q Consensus 127 d~~G~I~~~~~~~~~~~~~~eil~~i~~L~ 156 (157)
-|+|.|.+.|+|.+ .+++.+.+++|
T Consensus 404 ~PtGdv~FFH~G~s-----kaM~~A~keIk 428 (441)
T COG4098 404 RPTGDVLFFHYGKS-----KAMKQARKEIK 428 (441)
T ss_pred CCCCCEEEEECCCH-----HHHHHHHHHHH
T ss_conf 89875899964633-----89999999999
No 145
>pfam04278 Tic22 Tic22-like family. The preprotein translocation at the inner envelope membrane of chloroplasts so far involves five proteins: Tic110, Tic55, Tic40, Tic22 (this family) and Tic20. The molecular function of these proteins has not yet been established.
Probab=61.23 E-value=12 Score=19.35 Aligned_cols=85 Identities=12% Similarity=0.249 Sum_probs=51.7
Q ss_pred CCCCCEEEECCCCCEEEHHHHC-CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCC
Q ss_conf 6537307886999788289869-98599996511367663112610000000001233332223444321111-2-2221
Q gi|254780212|r 8 DKAPHFVLPSNDEQEISLLALG-GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHK-K-FHQK 84 (157)
Q Consensus 8 ~~aP~f~l~~~~g~~~~l~~l~-gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~-~-~~~~ 84 (157)
+.+|=|++.|.+|+.+-.+.-. |+.+..+|..... ...-+..++..-++.. .++.|..||-+....+. + -.+.
T Consensus 59 ~~VPVftItn~~g~pll~s~~~~~~sv~~vf~sq~d---A~afL~~lk~~~pe~~-~~~kV~pvsLg~vY~l~~~~~~k~ 134 (259)
T pfam04278 59 AGVPVFTITNSNGEPVLVSGKNGGKSVGLLFLSQED---AEAFLNELKKQNPELA-SGAKVVPISLGQVYKLAQSNQKKV 134 (259)
T ss_pred CCCCEEEEECCCCCEEEEECCCCCCEEEEEEECHHH---HHHHHHHHHHHCHHHH-CCCEEEEEEHHHHHHHHHHHCCCC
T ss_conf 488569998699987888627889779999966999---9999999875194340-575599967899999888751687
Q ss_pred CCCCCCCHHHHH
Q ss_conf 000000001234
Q gi|254780212|r 85 HNLSITLLADES 96 (157)
Q Consensus 85 ~~~~fpil~D~~ 96 (157)
.++.|.++-|+.
T Consensus 135 ~~l~f~fvP~~~ 146 (259)
T pfam04278 135 EGVAFRFVPDPK 146 (259)
T ss_pred CCEEEEECCCHH
T ss_conf 560699638989
No 146
>TIGR00411 redox_disulf_1 redox-active disulfide protein 1; InterPro: IPR004502 This group of proteins includes thioredoxins, glutaredoxins, protein-disulphide isomerases, and others, some of which have several such domains. The sequence of proteins in this group at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although overall the sequence seems closer to thioredoxins. Proteins may be involved in a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis.
Probab=60.29 E-value=16 Score=18.47 Aligned_cols=77 Identities=9% Similarity=0.160 Sum_probs=43.5
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 65113676631126100000000012333322234443211112222100000000123445899859866665576654
Q gi|254780212|r 37 FYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKY 116 (157)
Q Consensus 37 f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~ 116 (157)
.|.+--||+|+.-..-..+...++.++ +.+.-|++ |.+.+-|=.||+..
T Consensus 5 lFTSPtCPyCP~A~~VV~~vakE~gd~-~~v~~in~---------------------~e~~~kA~~yGi~a--------- 53 (82)
T TIGR00411 5 LFTSPTCPYCPKAEKVVEEVAKEEGDL-VEVEKINV---------------------MEDLKKALEYGIMA--------- 53 (82)
T ss_pred EECCCCCCCCCCHHHHHHHHHCCCCCE-EEEEEECC---------------------CCCHHHHHHCCCCC---------
T ss_conf 511887688854368898874058973-43222124---------------------54847887516352---------
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 442107999889997999976888578999999999985
Q gi|254780212|r 117 MGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 117 ~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L 155 (157)
.|+ .+|| |.++.+ |.+. -+++.++|+.+
T Consensus 54 ---VPa-ivIN--g~v~f~--GaP~---~eeL~eaI~k~ 81 (82)
T TIGR00411 54 ---VPA-IVIN--GKVRFV--GAPD---KEELVEAIRKR 81 (82)
T ss_pred ---CCE-EEEC--CEEEEE--EECC---HHHHHHHHHHC
T ss_conf ---684-7877--906885--3088---68999997631
No 147
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase; InterPro: IPR011286 This entry describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (IPR002198 from INTERPRO). This protein has been characterised in Erwinia chrysanthemi as an enzyme of pectin degradation .; GO: 0008678 2-deoxy-D-gluconate 3-dehydrogenase activity, 0051287 NAD binding.
Probab=59.48 E-value=6.5 Score=20.95 Aligned_cols=98 Identities=12% Similarity=0.170 Sum_probs=60.4
Q ss_pred HHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC-HHHHHH-------
Q ss_conf 869985999965113676631126100000000012333322234-44321111222210000000-012344-------
Q gi|254780212|r 27 ALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGIS-PDSIASHKKFHQKHNLSITL-LADESK------- 97 (157)
Q Consensus 27 ~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is-~d~~~~~~~~~~~~~~~fpi-l~D~~~------- 97 (157)
+|.||..||. | |.+=+. +-..-.+.+.|+.+++++ ...+.+.++-.+..|-.|.- ..|...
T Consensus 2 sL~GK~alvT---G-----a~tGlG--QG~a~gLA~AGadi~g~~~~~~~~ET~~~v~~~Gr~f~~~~~Dl~~~~~~~~~ 71 (249)
T TIGR01832 2 SLEGKVALVT---G-----ANTGLG--QGIAVGLAEAGADIVGVGHISEPSETQQQVEALGRRFLSLTADLSDIEAIKAL 71 (249)
T ss_pred CCCCCEEEEE---C-----CCCCHH--HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEHHHHHHHCHHHHHHH
T ss_conf 8787768882---5-----988736--89999998577417851431263888999998252100021212232137899
Q ss_pred --HHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHH
Q ss_conf --58998598666655766544421079998899979999768885789999999
Q gi|254780212|r 98 --EVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLK 150 (157)
Q Consensus 98 --~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~ 150 (157)
+..+.+| +.-.|||--|.||..-.-.-++.+.++|+.
T Consensus 72 ~~~~~~~~g----------------~~DiLVNNAGIIrR~da~~f~e~dWd~V~n 110 (249)
T TIGR01832 72 VDSAVEEFG----------------KIDILVNNAGIIRREDAVEFSEKDWDDVMN 110 (249)
T ss_pred HHHHHHHHC----------------CCCEEEECCCHHHHHHHHHCCCCCHHHHHH
T ss_conf 999998618----------------865676074221045775156144579998
No 148
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=54.26 E-value=2.7 Score=23.28 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=17.0
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96511367663112610000000001233332223444
Q gi|254780212|r 36 YFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPD 73 (157)
Q Consensus 36 ~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d 73 (157)
..|..+|||.|..--..| .++|+...-+.++
T Consensus 3 ~iYt~~~C~~C~~ak~~L-------~~~gi~y~~~di~ 33 (73)
T cd02976 3 TVYTKPDCPYCKATKRFL-------DERGIPFEEVDVD 33 (73)
T ss_pred EEECCCCCHHHHHHHHHH-------HHCCCEEEEEECC
T ss_conf 999189997799999999-------9839904999879
No 149
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=52.06 E-value=22 Score=17.72 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=10.8
Q ss_pred EEEECCCCEEEEE
Q ss_conf 9998899979999
Q gi|254780212|r 123 TFLIDEKGIIAQI 135 (157)
Q Consensus 123 tfiid~~G~I~~~ 135 (157)
+.||||+|+|+..
T Consensus 245 S~IvdP~G~vla~ 257 (294)
T cd07582 245 SMIVDYKGRVLAE 257 (294)
T ss_pred EEEECCCCCEEEE
T ss_conf 6998799988888
No 150
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=51.46 E-value=2.8 Score=23.21 Aligned_cols=45 Identities=9% Similarity=0.114 Sum_probs=38.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 126100000000012333322234443211112222100000000
Q gi|254780212|r 48 AEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLL 92 (157)
Q Consensus 48 ~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil 92 (157)
.-.+++.++..+.++.|..++-+|..++...+.|.++.+++|-.-
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~ 90 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYR 90 (175)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCEEEC
T ss_conf 899999999999986597799981897888876665259723402
No 151
>PRK00394 transcription factor; Reviewed
Probab=50.06 E-value=24 Score=17.44 Aligned_cols=114 Identities=11% Similarity=0.132 Sum_probs=60.1
Q ss_pred CEEEEEEEECC-CCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--
Q ss_conf 85999965113-676631126---100000000012333322234443211112222100000000123445899859--
Q gi|254780212|r 31 SKIVLYFYPKD-DTSGCTAEA---INFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYD-- 104 (157)
Q Consensus 31 k~vvl~f~~~~-~tp~C~~e~---~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~g-- 104 (157)
|.+++.|--|- -|-+|..+- .++++....+++.|+.+. ..+....+......+++||+=.+ .++.+++
T Consensus 48 k~t~lIF~SGK~v~TGakS~~~a~~a~~k~~~~l~k~g~~~~---~~~~~~V~NiVas~~~~~~i~L~---~la~~~~~~ 121 (178)
T PRK00394 48 KIAALIFRSGKVVCTGAKSVEDLHEAVKKIVKKLKDLGIEVI---DEPEIKVQNIVASADLGTELNLN---AIAIGLGLE 121 (178)
T ss_pred CEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---CCCCEEEEEEEEEEECCCCCCHH---HHHHHCCCC
T ss_conf 679999858819998539999999999999999998399733---45643899999997559873289---998750744
Q ss_pred -C-CCCCCCCCCCCCCC-CEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf -8-66665576654442-107999889997999976888578999999999985
Q gi|254780212|r 105 -V-WKEKSMFGKKYMGV-VRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 105 -v-~~~~~~~~~~~~~~-~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L 155 (157)
. |.++-+.|.-+... .+++++|=..|+|+-. |. ++.+++.++++.+
T Consensus 122 ~~~YEPE~FPGLiyR~~~pk~~~liF~sGkivit--Ga---ks~~~~~~a~~~i 170 (178)
T PRK00394 122 NIEYEPEQFPGLVYRLDDPKVVVLLFGSGKLVIT--GA---KSEEDAEKAVEKI 170 (178)
T ss_pred CCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEE--CC---CCHHHHHHHHHHH
T ss_conf 5407854374179995799789999779849998--66---9999999999999
No 152
>smart00594 UAS UAS domain.
Probab=49.30 E-value=25 Score=17.36 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=43.6
Q ss_pred HCCCEEEEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 69985999965113676631126100--0000000123333222344432111122221000000001234458998598
Q gi|254780212|r 28 LGGSKIVLYFYPKDDTSGCTAEAINF--SSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDV 105 (157)
Q Consensus 28 l~gk~vvl~f~~~~~tp~C~~e~~~l--~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv 105 (157)
-.+|+++|+++ ..+++.|..-...+ ++...++-+.++.+++.+.++.+ ...++..|.+
T Consensus 25 ~~~K~LlVylh-~~~~~~~~~f~Rdvl~~~~V~~~i~~nfVfw~~d~~~~e-------------------g~~~~~~y~~ 84 (122)
T smart00594 25 RQRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-------------------GQRVSQFYKL 84 (122)
T ss_pred HCCCCEEEEEE-CCCCHHHHHHHHHHCCCHHHHHHHHHCEEEEEECCCCHH-------------------HHHHHHHCCC
T ss_conf 50672699993-788543899999862788899999734889875168745-------------------9999986289
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCC-EEEEEECCC-CCCCCHHHHHHHH
Q ss_conf 6666557665444210799988999-799997688-8578999999999
Q gi|254780212|r 106 WKEKSMFGKKYMGVVRTTFLIDEKG-IIAQIWKPV-TLKNHAQSVLKMV 152 (157)
Q Consensus 106 ~~~~~~~~~~~~~~~r~tfiid~~G-~I~~~~~~~-~~~~~~~eil~~i 152 (157)
. ..|.+-||||.. .=...|.+. .....+++++..+
T Consensus 85 ~------------~~P~vaiidprtg~~~~~~~~~i~g~~~~~~l~~~l 121 (122)
T smart00594 85 D------------SFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred C------------CCCEEEEEECCCCCEEEEEEEEECCCCCHHHHHHHH
T ss_conf 9------------999799992798870078998852888999999864
No 153
>KOG0912 consensus
Probab=46.49 E-value=5.2 Score=21.54 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=29.0
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC---CCCCCC-CCCCCC
Q ss_conf 9859999651136766311261000000000123---333222-344432
Q gi|254780212|r 30 GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE---STILIG-ISPDSI 75 (157)
Q Consensus 30 gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~---gv~vv~-is~d~~ 75 (157)
...+.++|| ++||+.-+.-.+-|.+..++|+.. |-.|+| |.+|..
T Consensus 13 ~elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e 61 (375)
T KOG0912 13 NELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE 61 (375)
T ss_pred CEEEEEEEE-HHHCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH
T ss_conf 408966633-0113588887688999999999868886459987055315
No 154
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=46.34 E-value=28 Score=17.08 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=10.8
Q ss_pred EEEEECCCCEEEEE
Q ss_conf 79998899979999
Q gi|254780212|r 122 TTFLIDEKGIIAQI 135 (157)
Q Consensus 122 ~tfiid~~G~I~~~ 135 (157)
.+.||||+|.|+.-
T Consensus 241 ~S~Ii~P~G~vla~ 254 (297)
T cd07564 241 GSAIVGPDGEVLAG 254 (297)
T ss_pred EEEEECCCCCEEEC
T ss_conf 58999899978656
No 155
>PRK10819 transport protein TonB; Provisional
Probab=42.65 E-value=32 Score=16.73 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=26.6
Q ss_pred CCCCEEEEEECCCCEEEEEE-CCCCCCCCHH-HHHHHHHHHH
Q ss_conf 44210799988999799997-6888578999-9999999850
Q gi|254780212|r 117 MGVVRTTFLIDEKGIIAQIW-KPVTLKNHAQ-SVLKMVKSLK 156 (157)
Q Consensus 117 ~~~~r~tfiid~~G~I~~~~-~~~~~~~~~~-eil~~i~~L~ 156 (157)
.|...--|.||.+|+|..+. -...+..-+| +++++++.+|
T Consensus 177 EG~V~v~fdV~~~G~V~nv~Vv~s~p~~~Fd~aa~~Av~~Wr 218 (243)
T PRK10819 177 EGQVKVKFDVDEDGRVDNVQILSAQPANMFEREVKQAMRKWR 218 (243)
T ss_pred CCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 747999999899998845699936894535899999999564
No 156
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=42.64 E-value=5.1 Score=21.61 Aligned_cols=102 Identities=16% Similarity=0.107 Sum_probs=48.7
Q ss_pred HHHHCCCEEEEEEEECCCCCCCCCCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---HH
Q ss_conf 89869985999965113676631126-10000-000001233332223444321111222210000000012344---58
Q gi|254780212|r 25 LLALGGSKIVLYFYPKDDTSGCTAEA-INFSS-LKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESK---EV 99 (157)
Q Consensus 25 l~~l~gk~vvl~f~~~~~tp~C~~e~-~~l~~-~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~---~~ 99 (157)
...-.+|+++|.++ .+||.-|.... ..|.+ ...++-+.. +|.|-+|-.+. | |-+. ++
T Consensus 10 ~Ak~e~KpIflsig-~~~C~wC~vM~~esF~d~eVA~~lN~~--FVpVkVDreer------------P---dld~~y~~~ 71 (124)
T cd02955 10 KARREDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILNEN--FVPIKVDREER------------P---DVDKIYMNA 71 (124)
T ss_pred HHHHCCCCEEEEEE-CCCCHHHHHHHHHHCCCHHHHHHHHHH--CEEEECCHHHC------------H---HHHHHHHHH
T ss_conf 99972998899974-676988999998731899999999842--03433063348------------5---589999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE--ECCCCC---CCCHHHHHHHHHHH
Q ss_conf 998598666655766544421079998899979999--768885---78999999999985
Q gi|254780212|r 100 LKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI--WKPVTL---KNHAQSVLKMVKSL 155 (157)
Q Consensus 100 ~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~--~~~~~~---~~~~~eil~~i~~L 155 (157)
.+... + . +.=|.+.++.|+|+-.+. |-+-.. .+.+.++|..|..+
T Consensus 72 ~~~~~--------~--~-gGWPl~vfltp~~~Pf~~~tY~P~~~~~g~~gf~~~l~~i~~~ 121 (124)
T cd02955 72 AQAMT--------G--Q-GGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIREL 121 (124)
T ss_pred HHHHC--------C--C-CCCCEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99970--------7--9-9986036787999646887526998778997799999999998
No 157
>pfam00795 CN_hydrolase Carbon-nitrogen hydrolase. This family contains hydrolases that break carbon-nitrogen bonds. The family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. Nitrilase-related proteins generally have a conserved E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha sandwich proteins.
Probab=41.69 E-value=33 Score=16.64 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=10.4
Q ss_pred EEEEECCCCEEEEEECC
Q ss_conf 79998899979999768
Q gi|254780212|r 122 TTFLIDEKGIIAQIWKP 138 (157)
Q Consensus 122 ~tfiid~~G~I~~~~~~ 138 (157)
+.++|+++|.+...|+.
T Consensus 94 s~~~i~~~G~i~~~Y~K 110 (172)
T pfam00795 94 TLVLIDPDGELLGKYRK 110 (172)
T ss_pred EEEEECCCCEEEEEEEE
T ss_conf 88999699869999933
No 158
>TIGR02181 GRX_bact glutaredoxin 3; InterPro: IPR011900 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulphides .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=41.64 E-value=9.4 Score=19.96 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=24.2
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CC--CCCCCCCCCCCCCCCCCC--CCCCC
Q ss_conf 965113676631126100000000012333-32--223444321111222210--00000
Q gi|254780212|r 36 YFYPKDDTSGCTAEAINFSSLKADFDEEST-IL--IGISPDSIASHKKFHQKH--NLSIT 90 (157)
Q Consensus 36 ~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv-~v--v~is~d~~~~~~~~~~~~--~~~fp 90 (157)
..|...+||+|.. . ..=+.++|| .+ +-|+.|+-..-.++.++- .-.+|
T Consensus 2 ~iYT~~~CPYC~r-A------K~LL~~kGv~~~~Ei~vd~dpD~~r~eM~~Rs~Gr~TVP 54 (82)
T TIGR02181 2 TIYTKPYCPYCSR-A------KALLESKGVGTFTEIRVDGDPDALRDEMMQRSGGRRTVP 54 (82)
T ss_pred EEECCCCCCCCHH-H------HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 4631599880268-8------999985698863034457981068899999828994043
No 159
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=40.65 E-value=6.6 Score=20.91 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=17.2
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 51136766311261000000000123333222344432
Q gi|254780212|r 38 YPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSI 75 (157)
Q Consensus 38 ~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~ 75 (157)
|...+||.|..- ..-+.++|+...-|..|..
T Consensus 6 Ysk~~CpyC~~A-------K~lL~~kgi~y~ei~l~~~ 36 (73)
T cd03027 6 YSRLGCEDCTAV-------RLFLREKGLPYVEINIDIF 36 (73)
T ss_pred EECCCCHHHHHH-------HHHHHHCCCCEEEEECCCC
T ss_conf 918999679999-------9999987996499988899
No 160
>PRK05370 argininosuccinate synthase; Validated
Probab=39.76 E-value=6.4 Score=21.00 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=6.8
Q ss_pred CCEEEEEEEECCCCCCC
Q ss_conf 98599996511367663
Q gi|254780212|r 30 GSKIVLYFYPKDDTSGC 46 (157)
Q Consensus 30 gk~vvl~f~~~~~tp~C 46 (157)
||+|||.|-=|-.|++|
T Consensus 11 gkKVvLAYSGGLDTSv~ 27 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAA 27 (447)
T ss_pred CCEEEEEECCCCHHHHH
T ss_conf 88899995898279999
No 161
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=39.59 E-value=8.2 Score=20.33 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=21.0
Q ss_pred CCCCCCCC--CCCCCCCCCCCCC--CCCCCCC-CC--CCCCCCCCCC
Q ss_conf 36766311--2610000000001--2333322-23--4443211112
Q gi|254780212|r 41 DDTSGCTA--EAINFSSLKADFD--EESTILI-GI--SPDSIASHKK 80 (157)
Q Consensus 41 ~~tp~C~~--e~~~l~~~~~~~~--~~gv~vv-~i--s~d~~~~~~~ 80 (157)
+|||+|=. =+.+|++...++. -.+|.|| || |.-+|+.++.
T Consensus 2 ~WCPGCGDFGIL~AL~~AL~EL~LdP~qvvVVSGIGCS~ktPhY~n~ 48 (302)
T TIGR02177 2 DWCPGCGDFGILSALQKALAELNLDPEQVVVVSGIGCSAKTPHYVNV 48 (302)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 86889886778999999998628898527998131311347730013
No 162
>pfam06053 DUF929 Domain of unknown function (DUF929). Family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=37.51 E-value=19 Score=18.04 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=22.8
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998599996511367663112610000000001233
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES 64 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~g 64 (157)
.||..|++. -..|||.|..+-=.|-....+|....
T Consensus 57 ngk~~V~fv-sw~GCP~gA~~sW~Ly~ALs~yGn~s 91 (249)
T pfam06053 57 NGKVAVYFV-SWEGCPYGAADSWPLYIALSRYGNFN 91 (249)
T ss_pred CCCEEEEEE-EECCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 992699998-61368776323689999998569647
No 163
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=37.46 E-value=38 Score=16.23 Aligned_cols=40 Identities=18% Similarity=0.343 Sum_probs=25.3
Q ss_pred CCCCEEEEEECCCCEEEEEEC-CCCCCCCH-HHHHHHHHHHH
Q ss_conf 442107999889997999976-88857899-99999999850
Q gi|254780212|r 117 MGVVRTTFLIDEKGIIAQIWK-PVTLKNHA-QSVLKMVKSLK 156 (157)
Q Consensus 117 ~~~~r~tfiid~~G~I~~~~~-~~~~~~~~-~eil~~i~~L~ 156 (157)
.|...-.|.||++|.|..+-. .....+.+ .++|++|+.++
T Consensus 179 ~G~V~V~f~i~~~G~v~~v~v~~SSg~~~lD~aal~air~~~ 220 (244)
T COG0810 179 EGTVKVKFTIDPDGNVTNVRVLKSSGSPALDRAALEAIRKWR 220 (244)
T ss_pred CCEEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 406999999899997845788623896788899999999725
No 164
>PRK11478 hypothetical protein; Provisional
Probab=37.33 E-value=27 Score=17.13 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=35.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf 33332223444321111222210000000012344589985986666557665444210799988999799997
Q gi|254780212|r 63 ESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIW 136 (157)
Q Consensus 63 ~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~ 136 (157)
.|+.=+++++|+.+...++.+++|+++.-. .+ ......|.+|+-||+|.....+
T Consensus 74 ~G~~HlAf~VdDid~a~~~L~~~Gv~~~~~-----------~~---------~~~~g~r~~ff~DPDG~~lEL~ 127 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLESHNVKCEAI-----------RV---------DPYTQKRFTFFNDPDGLPLELY 127 (129)
T ss_pred CCCEEEEEEECCHHHHHHHHHHCCCEECCE-----------EE---------CCCCCCEEEEEECCCCCEEEEE
T ss_conf 672079999279999999999889865230-----------40---------7988957999999999849987
No 165
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=36.92 E-value=10 Score=19.70 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=8.8
Q ss_pred EEECCCCCCCCCCC
Q ss_conf 65113676631126
Q gi|254780212|r 37 FYPKDDTSGCTAEA 50 (157)
Q Consensus 37 f~~~~~tp~C~~e~ 50 (157)
.|...+||+|.+--
T Consensus 5 iyt~~~CPyC~~ak 18 (80)
T COG0695 5 IYTKPGCPYCKRAK 18 (80)
T ss_pred EEECCCCCHHHHHH
T ss_conf 99389996459999
No 166
>TIGR01352 tonB_Cterm TonB family C-terminal domain; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria . Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins . The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores . An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin . To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane. ; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space.
Probab=36.26 E-value=40 Score=16.11 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=26.3
Q ss_pred CCCCEEEEEECCCCEEEEEE-CCCCCCCCHH-HHHHHHHHHH
Q ss_conf 44210799988999799997-6888578999-9999999850
Q gi|254780212|r 117 MGVVRTTFLIDEKGIIAQIW-KPVTLKNHAQ-SVLKMVKSLK 156 (157)
Q Consensus 117 ~~~~r~tfiid~~G~I~~~~-~~~~~~~~~~-eil~~i~~L~ 156 (157)
.|...-.|.||++|.|..+- -.......+| ++|++++.++
T Consensus 13 ~G~V~v~~~v~~~G~v~~~~v~~Ssg~~~lD~~Al~a~~~~~ 54 (81)
T TIGR01352 13 EGTVVVRFTVDASGRVTSVRVLKSSGNRALDRAALEAVRKAR 54 (81)
T ss_pred CCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 656899998689983557888305798788799999998500
No 167
>TIGR00936 ahcY adenosylhomocysteinase; InterPro: IPR000043 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD^+ as a cofactor. AdoHcyase is a highly conserved protein of about 430 to 470 amino acids. The family contains a glycine-rich region in the central part of AdoHcyase; a region thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon compound metabolic process.
Probab=36.08 E-value=16 Score=18.58 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=24.8
Q ss_pred CCCCCCCCCEEEECCCCCEEEHHH---------HCCCEEEEEEEECCCCC-CCC
Q ss_conf 779865373078869997882898---------69985999965113676-631
Q gi|254780212|r 4 LSVGDKAPHFVLPSNDEQEISLLA---------LGGSKIVLYFYPKDDTS-GCT 47 (157)
Q Consensus 4 l~vG~~aP~f~l~~~~g~~~~l~~---------l~gk~vvl~f~~~~~tp-~C~ 47 (157)
+.|.|..-=+-.-|--|..-|+-| +.||.+|+.-| .||+ +|.
T Consensus 176 i~VNDa~tK~~FDNrYGtg~S~~DGi~RaTn~LiAGk~vVVaGY--Gw~G~G~A 227 (422)
T TIGR00936 176 IAVNDAYTKYLFDNRYGTGQSTIDGILRATNLLIAGKTVVVAGY--GWCGKGIA 227 (422)
T ss_pred EEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC--CCCCHHHH
T ss_conf 65053012132127755763024344566557553887899703--86307899
No 168
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=35.69 E-value=9.9 Score=19.82 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=10.5
Q ss_pred CEEEEEEEECCCCCCCCCC
Q ss_conf 8599996511367663112
Q gi|254780212|r 31 SKIVLYFYPKDDTSGCTAE 49 (157)
Q Consensus 31 k~vvl~f~~~~~tp~C~~e 49 (157)
|.++|+ ...+||.|.+-
T Consensus 1 k~V~Iy--sk~~CpyC~~A 17 (72)
T cd03029 1 ESVSLF--TKPGCPFCARA 17 (72)
T ss_pred CEEEEE--CCCCCHHHHHH
T ss_conf 989999--08999679999
No 169
>PTZ00075 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=35.10 E-value=17 Score=18.32 Aligned_cols=19 Identities=32% Similarity=0.775 Sum_probs=13.7
Q ss_pred HCCCEEEEEEEECCCCC-CCCC
Q ss_conf 69985999965113676-6311
Q gi|254780212|r 28 LGGSKIVLYFYPKDDTS-GCTA 48 (157)
Q Consensus 28 l~gk~vvl~f~~~~~tp-~C~~ 48 (157)
+.||.+|+..| .||+ +|..
T Consensus 252 iaGK~vVV~GY--G~~GkG~A~ 271 (476)
T PTZ00075 252 IAGKTVVVCGY--GDVGKGCAQ 271 (476)
T ss_pred ECCCEEEEEEC--CCCCHHHHH
T ss_conf 54758999504--530121476
No 170
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=35.03 E-value=7.9 Score=20.44 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=7.1
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999985
Q gi|254780212|r 145 AQSVLKMVKSL 155 (157)
Q Consensus 145 ~~eil~~i~~L 155 (157)
.+.|+..|+++
T Consensus 287 ~eaV~~~L~~~ 297 (302)
T PRK12702 287 NEVVLMWLEET 297 (302)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999865
No 171
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=35.03 E-value=42 Score=15.99 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=11.0
Q ss_pred EEEEECCCCEEEEE
Q ss_conf 79998899979999
Q gi|254780212|r 122 TTFLIDEKGIIAQI 135 (157)
Q Consensus 122 ~tfiid~~G~I~~~ 135 (157)
.++||||+|+|+..
T Consensus 227 ~S~Iv~P~G~ila~ 240 (279)
T TIGR03381 227 SSFIADHTGELVAE 240 (279)
T ss_pred CEEEECCCCCEEEE
T ss_conf 83899999999876
No 172
>TIGR02180 GRX_euk Glutaredoxin; InterPro: IPR011899 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry is found in eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=34.92 E-value=10 Score=19.79 Aligned_cols=48 Identities=8% Similarity=0.119 Sum_probs=26.3
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 9965113676631126100000000012333322234-44321111222210
Q gi|254780212|r 35 LYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGIS-PDSIASHKKFHQKH 85 (157)
Q Consensus 35 l~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is-~d~~~~~~~~~~~~ 85 (157)
+.|- .++||+|.+-..-|.+. . ++..-..++=|. .++-.++++|..+.
T Consensus 2 ~vFS-Ks~CPYC~~ak~~L~~~-~-~~~~~~~v~ElD~~~~g~~~Q~~L~~~ 50 (85)
T TIGR02180 2 VVFS-KSYCPYCKKAKEILKKL-N-VKPAKYKVVELDQLSNGSEIQDYLKEI 50 (85)
T ss_pred EEEE-CCCCCHHHHHHHHHHHC-C-CCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 5774-38984688999998744-8-986764067702578857899999984
No 173
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=34.46 E-value=10 Score=19.75 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=31.9
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 996511367663112610000000001233332223444321111222210000000012344
Q gi|254780212|r 35 LYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESK 97 (157)
Q Consensus 35 l~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~ 97 (157)
|+.| ..||.|.+--. .-.+++..++++-+..|++++..+..-+.- .|+|-.+++
T Consensus 3 LY~y--~hCPfc~raRm-----~~g~kni~~e~~~l~~dd~~t~~~~iG~k~--VPiL~~~DG 56 (71)
T cd03037 3 LYIY--EHCPFCVKARM-----IAGLKNIPVEQIILQNDDEATPIRMIGAKQ--VPILEKDDG 56 (71)
T ss_pred EEEE--CCCHHHHHHHH-----HHHHCCCCEEEEEEECCCCHHHHHHCCCCC--CCEEEECCC
T ss_conf 1583--44838899999-----987629984899830598441476538822--237982898
No 174
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=34.19 E-value=41 Score=16.02 Aligned_cols=35 Identities=26% Similarity=0.531 Sum_probs=27.6
Q ss_pred CCCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCCC
Q ss_conf 3730788699978828986998599996511367663
Q gi|254780212|r 10 APHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGC 46 (157)
Q Consensus 10 aP~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C 46 (157)
+|-..+.|..|+.+.+.. .+..+.||+||-..+| |
T Consensus 2 FP~~~lvd~~g~p~~~~~-~~~~i~iF~YP~~~eP-~ 36 (171)
T cd03475 2 FPKYLLVNIKGGQQQLQV-NSPKIYLFAYPLTNEP-C 36 (171)
T ss_pred CCCEEEEECCCCCEEECC-CCCCEEEEECCCCCCC-E
T ss_conf 960799876898144016-9986799938778996-4
No 175
>pfam10740 DUF2529 Protein of unknown function (DUF2529). This family is conserved in the Bacillales. The function is not known. Several members are annotated as being YWJG, a protein expressed downstream of pyrG, a gene encoding for cytidine triphosphate synthetase.
Probab=33.72 E-value=14 Score=18.98 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=27.8
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCC---CCCCCCCCHHHHHH
Q ss_conf 76631-126100000000012333322234443--211112222---10000000012344
Q gi|254780212|r 43 TSGCT-AEAINFSSLKADFDEESTILIGISPDS--IASHKKFHQ---KHNLSITLLADESK 97 (157)
Q Consensus 43 tp~C~-~e~~~l~~~~~~~~~~gv~vv~is~d~--~~~~~~~~~---~~~~~fpil~D~~~ 97 (157)
||.++ .|...+ .+++.+.|+.+++||... ...+..++. ...++-|++-|+++
T Consensus 89 s~~~~d~e~~~~---a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~vhId~~l~~~LvP~EdG 146 (172)
T pfam10740 89 SRFSNDEEAVAL---AKKLYDQGIDVVAVSPNAKEGDSLADHADVHIDLKLKRPLVPDEDG 146 (172)
T ss_pred CCCCCCHHHHHH---HHHHHHCCCCEEEEECCCCCCCCCHHHEEEEEECCCCCCCCCCCCC
T ss_conf 699997899999---9999986998899816888887614440266764778786618889
No 176
>PRK13287 amiF formamidase; Provisional
Probab=33.71 E-value=44 Score=15.86 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=21.7
Q ss_pred HHHHHHCCCCCCCCCCCC--CCCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 458998598666655766--54442107999889997999976888
Q gi|254780212|r 97 KEVLKSYDVWKEKSMFGK--KYMGVVRTTFLIDEKGIIAQIWKPVT 140 (157)
Q Consensus 97 ~~~~~~~gv~~~~~~~~~--~~~~~~r~tfiid~~G~I~~~~~~~~ 140 (157)
.+..+..++|.--..... ....+--+.+|||++|.|+..|+...
T Consensus 89 ~~acr~~~vwgvfSi~E~np~~~~pYNT~iLIn~~Geiv~kYRKi~ 134 (333)
T PRK13287 89 AQACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKYRKLH 134 (333)
T ss_pred HHHHHHCCEEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECC
T ss_conf 9999977948999988876899986302899889981888998225
No 177
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=32.08 E-value=47 Score=15.70 Aligned_cols=14 Identities=7% Similarity=0.154 Sum_probs=10.7
Q ss_pred EEEEECCCCEEEEE
Q ss_conf 79998899979999
Q gi|254780212|r 122 TTFLIDEKGIIAQI 135 (157)
Q Consensus 122 ~tfiid~~G~I~~~ 135 (157)
.++|+||+|+|+.-
T Consensus 219 ~S~IvdP~G~vla~ 232 (291)
T cd07565 219 ESMIVNFDGRTLGE 232 (291)
T ss_pred EEEEECCCCCEEEE
T ss_conf 66999999888777
No 178
>PRK10416 cell division protein FtsY; Provisional
Probab=32.07 E-value=32 Score=16.70 Aligned_cols=90 Identities=13% Similarity=0.254 Sum_probs=47.3
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCC---CHHHHHHHHHH
Q ss_conf 985999965113676631126100000000012333322234443-----2111122221000000---00123445899
Q gi|254780212|r 30 GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDS-----IASHKKFHQKHNLSIT---LLADESKEVLK 101 (157)
Q Consensus 30 gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~-----~~~~~~~~~~~~~~fp---il~D~~~~~~~ 101 (157)
.++.||.+. |-.-.+=++-+..|+.+ |++.|-.++-++.|+ .+-++.|+++.++++- --+|+..-+..
T Consensus 293 ~~P~VIl~v-GvNG~GKTTTigKLA~~---~~~~gkkVllaA~DTfRaAAieQL~~w~~r~~v~vi~~~~g~Dpa~V~~d 368 (499)
T PRK10416 293 KTPFVILMV-GVNGVGKTTTIGKLARQ---FEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFD 368 (499)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHH---HHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH
T ss_conf 998799997-47878789899999999---99779953788406675689999999842457369836899997999999
Q ss_pred HCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 85986666557665444210799988999799
Q gi|254780212|r 102 SYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIA 133 (157)
Q Consensus 102 ~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~ 133 (157)
+....... .+ -+.|||--|+..
T Consensus 369 ai~~a~~~-----~~-----DvviiDTAGRl~ 390 (499)
T PRK10416 369 AIQAAKAR-----NV-----DVLIADTAGRLQ 390 (499)
T ss_pred HHHHHHHC-----CC-----CEEEEECCCCCC
T ss_conf 99999972-----99-----989985776432
No 179
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=30.76 E-value=49 Score=15.56 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=10.6
Q ss_pred EEEECCCCEEEEE
Q ss_conf 9998899979999
Q gi|254780212|r 123 TFLIDEKGIIAQI 135 (157)
Q Consensus 123 tfiid~~G~I~~~ 135 (157)
++|+||+|.|+..
T Consensus 231 S~Iv~P~G~vla~ 243 (284)
T cd07573 231 SFIADPFGEILAQ 243 (284)
T ss_pred EEEEECCCCEEEE
T ss_conf 2899389989873
No 180
>pfam03544 TonB Gram-negative bacterial tonB protein.
Probab=30.67 E-value=49 Score=15.55 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=22.2
Q ss_pred CCCEEEEEECCCCEEEEE--ECCCCCCCCH-HHHHHHHHHHH
Q ss_conf 421079998899979999--7688857899-99999999850
Q gi|254780212|r 118 GVVRTTFLIDEKGIIAQI--WKPVTLKNHA-QSVLKMVKSLK 156 (157)
Q Consensus 118 ~~~r~tfiid~~G~I~~~--~~~~~~~~~~-~eil~~i~~L~ 156 (157)
|.....|+||++|+|..+ ..+.+ ...+ ++++++++..+
T Consensus 16 G~v~v~~~I~~~G~v~~~~v~~ss~-~~~ld~~a~~~v~~~~ 56 (79)
T pfam03544 16 GTVTVRFTIDPDGSVKDVKVVKSSG-HEILDKAALEAVRKWR 56 (79)
T ss_pred EEEEEEEEEECCCCEEEEEEEECCC-CHHHHHHHHHHHHHCC
T ss_conf 6999999997999999999995379-7899999999998089
No 181
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=30.58 E-value=12 Score=19.33 Aligned_cols=12 Identities=8% Similarity=0.304 Sum_probs=5.5
Q ss_pred CHHHHHHHHHHH
Q ss_conf 999999999985
Q gi|254780212|r 144 HAQSVLKMVKSL 155 (157)
Q Consensus 144 ~~~eil~~i~~L 155 (157)
+.+++.+.+++-
T Consensus 271 ~~~~~~~~~~~~ 282 (284)
T PRK11869 271 NLEKIKEIIESK 282 (284)
T ss_pred CHHHHHHHHHHH
T ss_conf 999999999861
No 182
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=29.74 E-value=51 Score=15.45 Aligned_cols=13 Identities=8% Similarity=0.158 Sum_probs=10.7
Q ss_pred EEEECCCCEEEEE
Q ss_conf 9998899979999
Q gi|254780212|r 123 TFLIDEKGIIAQI 135 (157)
Q Consensus 123 tfiid~~G~I~~~ 135 (157)
+.|+||+|.|+..
T Consensus 209 S~ii~P~G~ila~ 221 (254)
T cd07576 209 SSIAGPDGTVLAR 221 (254)
T ss_pred EEEEECCCEEEEE
T ss_conf 6999189829876
No 183
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=29.72 E-value=15 Score=18.76 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=36.0
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHH
Q ss_conf 985999965113676631126100000000012333322234443211112222-10000000012344
Q gi|254780212|r 30 GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQ-KHNLSITLLADESK 97 (157)
Q Consensus 30 gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~-~~~~~fpil~D~~~ 97 (157)
|.++++-.. ..|+ +..+.+-.+...++.+.|++++-|++.+.++.+++.+ +..++.|+.+|-+.
T Consensus 25 ~~PI~VQSM--t~t~--T~Dv~at~~Qi~~L~~aGceiVRvavp~~~~a~al~~I~~~~~iPlvADIHF 89 (367)
T PRK00366 25 DAPIVVQSM--TNTD--TADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIHF 89 (367)
T ss_pred CCCEEEEEC--CCCC--CHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEECCCCC
T ss_conf 995025756--8997--4438999999999998499989984599999996999998478970312541
No 184
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=29.47 E-value=52 Score=15.43 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=11.1
Q ss_pred EEEEECCCCEEEEE
Q ss_conf 79998899979999
Q gi|254780212|r 122 TTFLIDEKGIIAQI 135 (157)
Q Consensus 122 ~tfiid~~G~I~~~ 135 (157)
.+.|+||+|.|...
T Consensus 209 ~S~Iv~P~G~ila~ 222 (253)
T cd07583 209 HSMVIDPWGEVLAE 222 (253)
T ss_pred EEEEECCCCCEEEE
T ss_conf 48999999869888
No 185
>pfam12017 Transposase_37 Transposase protein. Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with pfam05485.
Probab=29.10 E-value=15 Score=18.75 Aligned_cols=20 Identities=10% Similarity=0.228 Sum_probs=10.1
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q ss_conf 68885789999999999850
Q gi|254780212|r 137 KPVTLKNHAQSVLKMVKSLK 156 (157)
Q Consensus 137 ~~~~~~~~~~eil~~i~~L~ 156 (157)
+.+++.-.++.+...|..|.
T Consensus 187 y~f~t~m~~~~L~~II~kL~ 206 (236)
T pfam12017 187 FDFNTRMDADTLNNIIRKLH 206 (236)
T ss_pred EEECCCCCHHHHHHHHHHHH
T ss_conf 98368789999999999999
No 186
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=28.71 E-value=31 Score=16.80 Aligned_cols=41 Identities=20% Similarity=0.386 Sum_probs=27.6
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISP 72 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~ 72 (157)
++-+||+.||. ..++.|..--..|..++.+|. .+.++-|..
T Consensus 82 ~~~~VVVhiY~-~~~~~C~~l~~~L~~LA~k~~--~vKF~ki~a 122 (175)
T cd02987 82 KDTTVVVHIYE-PGIPGCAALNSSLLCLAAEYP--AVKFCKIRA 122 (175)
T ss_pred CCCEEEEEEEE-CCCCHHHHHHHHHHHHHHHCC--CEEEEEEEC
T ss_conf 98389999960-999658999999999998689--328999861
No 187
>TIGR00495 crvDNA_42K DNA-binding protein, 42 kDa; InterPro: IPR004545 Proteins of this family have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. The proteins are closely related to methionine aminopeptidase, a cobalt-binding protein. This group sequences are classified as non-peptidase homologues in MEROPS peptidase family M24 (clan MG). .
Probab=28.31 E-value=13 Score=19.11 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=20.1
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf 4589985986666557665444210799988999799997
Q gi|254780212|r 97 KEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIW 136 (157)
Q Consensus 97 ~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~ 136 (157)
|++...|.|+.++.+. ...=..+|.+|=|+|..+-.-
T Consensus 309 H~~L~pY~VLydk~G~---~Vaqfk~Tvll~pnG~~~l~~ 345 (407)
T TIGR00495 309 HKLLQPYPVLYDKDGE---FVAQFKFTVLLMPNGSIRLTS 345 (407)
T ss_pred CCCCCCCCCCCCCCCC---EEEEEEEEEEECCCCCEEECC
T ss_conf 7712662431227998---899888788853798654348
No 188
>PRK08244 hypothetical protein; Provisional
Probab=28.22 E-value=54 Score=15.29 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=22.0
Q ss_pred CCCCCCCEEEECCCCCEEEHHHHC--CCEEEEEE
Q ss_conf 986537307886999788289869--98599996
Q gi|254780212|r 6 VGDKAPHFVLPSNDEQEISLLALG--GSKIVLYF 37 (157)
Q Consensus 6 vG~~aP~f~l~~~~g~~~~l~~l~--gk~vvl~f 37 (157)
.|..+|++.|...+|...++.++. |+++||.|
T Consensus 393 ~G~r~P~~~l~~~dg~~~~l~dll~~g~f~ll~~ 426 (494)
T PRK08244 393 NGKRLPDIDLTLSDGTVKRLYSFLHKGRFVLLSL 426 (494)
T ss_pred CCCCCCCCEEECCCCCEEEHHHHHCCCCEEEEEC
T ss_conf 9986999500658995668999747981899946
No 189
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=28.08 E-value=19 Score=18.09 Aligned_cols=69 Identities=10% Similarity=0.074 Sum_probs=33.1
Q ss_pred CEEEECCCCCEEEHHHH----CCC-EEEEEEEECCCCCC-CCCCCCCCCCCCCCCC----------------CCCCCCCC
Q ss_conf 30788699978828986----998-59999651136766-3112610000000001----------------23333222
Q gi|254780212|r 12 HFVLPSNDEQEISLLAL----GGS-KIVLYFYPKDDTSG-CTAEAINFSSLKADFD----------------EESTILIG 69 (157)
Q Consensus 12 ~f~l~~~~g~~~~l~~l----~gk-~vvl~f~~~~~tp~-C~~e~~~l~~~~~~~~----------------~~gv~vv~ 69 (157)
|+-..+.+=+-++++.| .|+ .+|++|-|| ||. |. .|.-.+-+.+|+ +.||.+..
T Consensus 173 DlD~~~pdW~l~d~K~YiY~pLg~rvav~~faRG--CPf~C~--fCsQwkFWrryR~RdPkKfvdEI~~L~r~hgVgfF~ 248 (506)
T TIGR02026 173 DLDVLRPDWELVDWKKYIYYPLGVRVAVPNFARG--CPFTCN--FCSQWKFWRRYRARDPKKFVDEIEKLVREHGVGFFI 248 (506)
T ss_pred CCCCCCCCCCEEECCHHEECCCCCEEEEECCCCC--CCCCCC--CCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 0330067873553301122278736987316786--976557--457520445404788613899999998631853366
Q ss_pred CCCCCCCCCC----CCCCC
Q ss_conf 3444321111----22221
Q gi|254780212|r 70 ISPDSIASHK----KFHQK 84 (157)
Q Consensus 70 is~d~~~~~~----~~~~~ 84 (157)
+.-+.|--++ +|||.
T Consensus 249 LADEePT~Nr~~f~efCEe 267 (506)
T TIGR02026 249 LADEEPTVNRKKFQEFCEE 267 (506)
T ss_pred ECCCCCCCCHHHHHHHHHH
T ss_conf 3278873016899999999
No 190
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=28.01 E-value=35 Score=16.48 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=68.1
Q ss_pred CEEEHHHHCCCEEEEEEEEC--CCCCCCCC-CCC---------CCCCCCCCCCCCCC--CCCCCCCCC---CCC-CCCCC
Q ss_conf 78828986998599996511--36766311-261---------00000000012333--322234443---211-11222
Q gi|254780212|r 21 QEISLLALGGSKIVLYFYPK--DDTSGCTA-EAI---------NFSSLKADFDEEST--ILIGISPDS---IAS-HKKFH 82 (157)
Q Consensus 21 ~~~~l~~l~gk~vvl~f~~~--~~tp~C~~-e~~---------~l~~~~~~~~~~gv--~vv~is~d~---~~~-~~~~~ 82 (157)
.++|+.||-|+..-+.|..| --||+|.- +.. .+....+.++.+.- .=|.||--- ... +..|.
T Consensus 6 ~p~S~~D~PG~~a~~iF~~GCn~~CpyCHN~~~~~~~~~~~~~~~e~~~~~L~~R~~ll~gVVitGGEptlQ~~eL~d~~ 85 (220)
T TIGR02495 6 VPFSTVDYPGKLAFTIFFQGCNLKCPYCHNSELLIPRKGSGEIELEELLEFLRRRQGLLDGVVITGGEPTLQAGELGDFL 85 (220)
T ss_pred CCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 21146631885368887027889987888876400200576102777999987313421057872875323677789999
Q ss_pred CCC-C-CCCCCHHHHHHHHHHHCCCCCCCC---CCCCCC-CCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHH-HHHHH
Q ss_conf 210-0-000000123445899859866665---576654-4421079998899979999768885789999999-99985
Q gi|254780212|r 83 QKH-N-LSITLLADESKEVLKSYDVWKEKS---MFGKKY-MGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLK-MVKSL 155 (157)
Q Consensus 83 ~~~-~-~~fpil~D~~~~~~~~~gv~~~~~---~~~~~~-~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~-~i~~L 155 (157)
++- . +.|.|=-|.++..=+.+.-+-+.+ ..+.+. ..+.+..-+++.++....-+.+..+.+.++.+++ ..++|
T Consensus 86 ~~v~~nlGf~vkLdTNG~~P~~L~~ll~~gLvD~va~D~Kap~~~y~~~~G~~~~~~~~~tnisPsrtPe~l~~~~~~Sl 165 (220)
T TIGR02495 86 REVRENLGFEVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYGELYGREKNAAKKETNISPSRTPEKLLKNILKSL 165 (220)
T ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99998659278560678867899999860487578750147865674000633210035324687756589999987556
No 191
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=27.70 E-value=16 Score=18.48 Aligned_cols=11 Identities=27% Similarity=0.250 Sum_probs=6.3
Q ss_pred EEECCCCCCCC
Q ss_conf 65113676631
Q gi|254780212|r 37 FYPKDDTSGCT 47 (157)
Q Consensus 37 f~~~~~tp~C~ 47 (157)
.+|..|||+|-
T Consensus 13 ~~P~~wCpGCG 23 (281)
T PRK09628 13 KMPTLWCWGCG 23 (281)
T ss_pred CCCCCCCCCCC
T ss_conf 89988788997
No 192
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=27.55 E-value=56 Score=15.22 Aligned_cols=116 Identities=11% Similarity=0.095 Sum_probs=50.2
Q ss_pred HHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------------CCC-
Q ss_conf 86998599996511367663112610000000001233332223444321111222210000--------------000-
Q gi|254780212|r 27 ALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLS--------------ITL- 91 (157)
Q Consensus 27 ~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~--------------fpi- 91 (157)
++.||.+|++ |... -+.+ ....|-+.|..+..+|.+..++++.|.+..++. |-+
T Consensus 9 ~l~~k~Vlvv---GgG~-------va~r-Ka~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lvi 77 (210)
T COG1648 9 DLEGKKVLVV---GGGS-------VALR-KARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVI 77 (210)
T ss_pred ECCCCEEEEE---CCCH-------HHHH-HHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCHHHCCCCHHHHCCCEEEE
T ss_conf 8199779998---9989-------9999-999997469979998787449999999834853100223636536824999
Q ss_pred HH--HH--HH---HHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 01--23--44---5899859866665576654442107999889997999976888578999999999985
Q gi|254780212|r 92 LA--DE--SK---EVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 92 l~--D~--~~---~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L 155 (157)
.+ |+ +. ..++.++++...--.........|+ +++..+..+.+..+..-+.-...+.+.|+++
T Consensus 78 aAt~d~~ln~~i~~~a~~~~i~vNv~D~p~~~~f~~Pa--~~~r~~l~iaIsT~G~sP~la~~ir~~Ie~~ 146 (210)
T COG1648 78 AATDDEELNERIAKAARERRILVNVVDDPELCDFIFPA--IVDRGPLQIAISTGGKSPVLARLLREKIEAL 146 (210)
T ss_pred EECCCHHHHHHHHHHHHHHCCCEEECCCCCCCCEEECE--EECCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 91699899999999999939935604884658566010--5435887999977997749999999999997
No 193
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=27.51 E-value=27 Score=17.15 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=22.1
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9985999965113676631126100000000012
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~ 62 (157)
.++.+|+-|+ .-.||.|..--..+.++..++..
T Consensus 14 ~a~vtIvEf~-dy~Cp~C~~~~~~l~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFF-SYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9996799998-88886168882899999984799
No 194
>pfam05369 MtmB Monomethylamine methyltransferase MtmB. Monomethylamine methyltransferase of the archaebacterium Methanosarcina barkeri contains a novel amino acid, pyrrolysine, encoded by the termination codon UAG. The structure reveals a homohexamer comprised of individual subunits with a TIM barrel fold.
Probab=27.14 E-value=49 Score=15.54 Aligned_cols=22 Identities=36% Similarity=0.256 Sum_probs=13.7
Q ss_pred CCCCCCCCEEEECCCCCEEEHH
Q ss_conf 7986537307886999788289
Q gi|254780212|r 5 SVGDKAPHFVLPSNDEQEISLL 26 (157)
Q Consensus 5 ~vG~~aP~f~l~~~~g~~~~l~ 26 (157)
-+||+.|.|..-...|.++++.
T Consensus 116 s~gD~r~pivqGGptG~P~sed 137 (457)
T pfam05369 116 SVGDKRKPIVQGGPTGSPISED 137 (457)
T ss_pred CCCCCCCCEEECCCCCCCCCHH
T ss_conf 7887778604258889987589
No 195
>pfam11211 DUF2997 Protein of unknown function (DUF2997). This family of proteins has no known function.
Probab=27.07 E-value=57 Score=15.17 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=19.8
Q ss_pred EEEECCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 99988999799997688857899999999998
Q gi|254780212|r 123 TFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 123 tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~ 154 (157)
-|.|+|||+|.....|.. +.+=.++.+.|++
T Consensus 2 ~f~I~~DG~V~e~V~G~~-G~~C~~~T~~iE~ 32 (48)
T pfam11211 2 EFRIRPDGRVEEEVEGVS-GSSCLEATEELEE 32 (48)
T ss_pred EEEECCCCEEEEEEEEEE-CHHHHHHHHHHHH
T ss_conf 899979976999999610-8379999999999
No 196
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=26.49 E-value=58 Score=15.10 Aligned_cols=13 Identities=15% Similarity=0.575 Sum_probs=10.4
Q ss_pred EEEECCCCEEEEE
Q ss_conf 9998899979999
Q gi|254780212|r 123 TFLIDEKGIIAQI 135 (157)
Q Consensus 123 tfiid~~G~I~~~ 135 (157)
+.||||+|+|..-
T Consensus 233 S~Ii~P~G~via~ 245 (287)
T cd07568 233 SYFVDPRGQFVAS 245 (287)
T ss_pred EEEECCCCCEEEE
T ss_conf 0898899988865
No 197
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=26.11 E-value=16 Score=18.57 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHH
Q ss_conf 00000000012333322234443211112222-100000000123445
Q gi|254780212|r 52 NFSSLKADFDEESTILIGISPDSIASHKKFHQ-KHNLSITLLADESKE 98 (157)
Q Consensus 52 ~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~-~~~~~fpil~D~~~~ 98 (157)
+-.+...+++..|+.+|=|++++.++..++.+ +..++.|+.+|-+..
T Consensus 37 aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf~ 84 (361)
T COG0821 37 ATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIHFD 84 (361)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 999999999981897899936997899999999984799879873056
No 198
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=25.68 E-value=49 Score=15.57 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=44.2
Q ss_pred CCCCCCCCCCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 33322234443211---112222100000000123445899859866665576654442107999889997999976888
Q gi|254780212|r 64 STILIGISPDSIAS---HKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVT 140 (157)
Q Consensus 64 gv~vv~is~d~~~~---~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~ 140 (157)
+..+++-.+++++- +...|+++++||-+..+ ..++.++-|+-. +.-++.|+++ |.
T Consensus 49 ~LvviA~Dv~P~eiv~hlP~LCeek~IPy~~V~s-k~~LG~A~G~~r-----------~t~avaI~~~-g~--------- 106 (123)
T PRK04175 49 KLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPS-KEELGKAAGLEV-----------GAAAAAIVDA-GK--------- 106 (123)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC-HHHHHHHHCCCC-----------CEEEEEEECH-HH---------
T ss_conf 7899978999099999889999854999899789-999999968997-----------7799999703-87---------
Q ss_pred CCCCHHHHHHHHHHHHC
Q ss_conf 57899999999998509
Q gi|254780212|r 141 LKNHAQSVLKMVKSLKQ 157 (157)
Q Consensus 141 ~~~~~~eil~~i~~L~~ 157 (157)
....++++.+.|++|+.
T Consensus 107 ~~~~~~ei~~~i~~lk~ 123 (123)
T PRK04175 107 AKELVEDIVEKVNELKA 123 (123)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 78999999999998529
No 199
>pfam04551 GcpE GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.
Probab=25.64 E-value=21 Score=17.78 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHH
Q ss_conf 000012333322234443211112222-10000000012344
Q gi|254780212|r 57 KADFDEESTILIGISPDSIASHKKFHQ-KHNLSITLLADESK 97 (157)
Q Consensus 57 ~~~~~~~gv~vv~is~d~~~~~~~~~~-~~~~~fpil~D~~~ 97 (157)
..++.+.|++++=|++.+.++.+++.+ +...+.|+.+|-+.
T Consensus 37 i~~L~~aGceiVRvavp~~~~a~al~~I~~~~~iPlVADIHF 78 (345)
T pfam04551 37 IKRLEEAGCDIVRVAVPDMEAAEALKEIKKQSPIPLVADIHF 78 (345)
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 999998599989988799999984999998589971400424
No 200
>pfam05379 Peptidase_C23 Carlavirus endopeptidase. A peptidase involved in auto-proteolysis of a polyprotein from the plant pathogen blueberry scorch carlavirus (BBScV). Corresponds to Merops family C23.
Probab=25.31 E-value=34 Score=16.57 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=42.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 000000000123333222344--432111122221000000001234458998598666655766544421079998899
Q gi|254780212|r 52 NFSSLKADFDEESTILIGISP--DSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEK 129 (157)
Q Consensus 52 ~l~~~~~~~~~~gv~vv~is~--d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~ 129 (157)
-++...+.++.+-..|+.|=. ...+-..+.++..|++...+ ..+.+.|++-..-.. ...++++|++
T Consensus 6 vI~AiA~aL~R~~~eVl~Vl~~~~~~~~~eel~~G~Gl~l~~l----e~~f~~FdI~A~V~~--------~g~~~~lN~~ 73 (89)
T pfam05379 6 VIRAIAQALKRRPADVLRVLSKKCSEELLEELQEGLGLQIEDL----EELFEAFDICAHVNV--------GGETRVINEK 73 (89)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHH----HHHHHHCCEEEEEEE--------CCEEEEECCC
T ss_conf 6899999849999999999997105779999975899289999----999987785799998--------9989998899
Q ss_pred CEEEEEE
Q ss_conf 9799997
Q gi|254780212|r 130 GIIAQIW 136 (157)
Q Consensus 130 G~I~~~~ 136 (157)
|++...+
T Consensus 74 G~i~~~F 80 (89)
T pfam05379 74 GSISAEF 80 (89)
T ss_pred CCEEEEE
T ss_conf 9788999
No 201
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=25.21 E-value=61 Score=14.96 Aligned_cols=16 Identities=13% Similarity=0.478 Sum_probs=7.2
Q ss_pred EEEEECCCCEEEEEEC
Q ss_conf 7999889997999976
Q gi|254780212|r 122 TTFLIDEKGIIAQIWK 137 (157)
Q Consensus 122 ~tfiid~~G~I~~~~~ 137 (157)
+.+||||+|.++..|+
T Consensus 103 Sa~vv~p~G~~l~~YR 118 (295)
T cd07566 103 SALVVDPEGEVVFNYR 118 (295)
T ss_pred EEEEECCCCCEEEEEE
T ss_conf 4799878986611561
No 202
>TIGR01752 flav_long flavodoxin; InterPro: IPR010086 Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They function as electron transfer agents in a variety of microbial metabolic processes, including nitrogen fixation by nitrogenase , sulphite reduction , and light-dependent NADP+ reduction during photosynthesis . This entry describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in Escherichia coli .; GO: 0010181 FMN binding, 0006118 electron transport.
Probab=25.06 E-value=31 Score=16.79 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=21.3
Q ss_pred HHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9869985999965113676631126100000000012333322234
Q gi|254780212|r 26 LALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGIS 71 (157)
Q Consensus 26 ~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is 71 (157)
.+|.||.|-+|=. |+=-.+--.=+.+|..+++.+.++|+++||-.
T Consensus 83 ~dl~GK~VAlfGl-GDQ~~Ysd~F~dgmg~L~d~~~~~Ga~~VG~w 127 (176)
T TIGR01752 83 LDLKGKTVALFGL-GDQEGYSDTFCDGMGILYDKIKARGAKVVGFW 127 (176)
T ss_pred CCCCCCEEEEEEC-CCCCCCHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 2358876899725-88461106678778899999851588077514
No 203
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=24.64 E-value=26 Score=17.25 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=33.5
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNL 87 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~ 87 (157)
..|.+||-|- .+|+|.|...-.-|.+..++.++- +.++.+..|. ...|..-+++
T Consensus 13 ~drvvViRFG-r~~d~~Cm~mDeiL~k~a~~v~nf-a~iylvDide---Vpdfn~myeL 66 (114)
T cd02954 13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE---VPDFNKMYEL 66 (114)
T ss_pred CCEEEEEEEC-CCCCCHHHHHHHHHHHHHHHHHCC-EEEEEEECCC---CCCHHHHCCC
T ss_conf 7269999805-999927988989999999997546-0899998764---6313321003
No 204
>KOG0914 consensus
Probab=24.50 E-value=54 Score=15.28 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=26.7
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9859999651136766311261000000000123333
Q gi|254780212|r 30 GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTI 66 (157)
Q Consensus 30 gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~ 66 (157)
.+..+|.|| +.|.|-|..-.+-++++-.+|...+..
T Consensus 144 ~t~WlIeFf-a~ws~~Cv~~spvfaeLS~kyn~~~lk 179 (265)
T KOG0914 144 RTYWLIEFF-ACWSPKCVRFSPVFAELSIKYNNNLLK 179 (265)
T ss_pred CEEEEEEEE-EECCHHHCCCCCCCHHHHHHHCCCCCC
T ss_conf 349999987-406852301564407778772788775
No 205
>pfam03190 DUF255 Protein of unknown function, DUF255.
Probab=24.22 E-value=15 Score=18.76 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=47.9
Q ss_pred EHHHHCCCEEEEEEEECCCCCCCCCCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---H
Q ss_conf 289869985999965113676631126-10000-000001233332223444321111222210000000012344---5
Q gi|254780212|r 24 SLLALGGSKIVLYFYPKDDTSGCTAEA-INFSS-LKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESK---E 98 (157)
Q Consensus 24 ~l~~l~gk~vvl~f~~~~~tp~C~~e~-~~l~~-~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~---~ 98 (157)
..+.-.+|+++|.++ .+||.-|.... ..|.+ ...++-+.. +|.|=+|-.+. | |.+. .
T Consensus 31 ~~Ak~e~Kpiflsig-~~~ChwChvM~~esF~d~~vA~~lN~~--Fv~VkVDree~------------P---diD~~Ym~ 92 (163)
T pfam03190 31 AKARREDKPIFLSIG-YSTCHWCHVMAHESFEDPEVAAILNEH--FVPIKVDREER------------P---DIDAIYMT 92 (163)
T ss_pred HHHHHCCCCEEEEEE-CCCCHHHHHHHHHHCCCHHHHHHHHHH--EEEEEECHHHC------------H---HHHHHHHH
T ss_conf 999971998899952-787878999998734899999999742--03334063237------------5---57899999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE--ECCCCC---CCCHHHHHHHHHHH
Q ss_conf 8998598666655766544421079998899979999--768885---78999999999985
Q gi|254780212|r 99 VLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI--WKPVTL---KNHAQSVLKMVKSL 155 (157)
Q Consensus 99 ~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~--~~~~~~---~~~~~eil~~i~~L 155 (157)
+.+... + . +.=|.+.++.|+|+-.+. |-+-.. .+.+-++|..|..+
T Consensus 93 ~~q~~~--------g--~-gGWPL~vfltPdg~Pf~~gTY~P~~~~~g~pgf~~~L~~i~~~ 143 (163)
T pfam03190 93 AVQALT--------G--S-GGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQVLEAIAEA 143 (163)
T ss_pred HHHHHH--------C--C-CCCCCEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 999970--------7--8-9975124687999746887626987668887899999999999
No 206
>TIGR01511 ATPase-IB1_Cu copper-translocating P-type ATPase; InterPro: IPR006403 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents P-type ATPases that specialise in cation and copper transport; those transporting copper (3.6.3.4 from EC) have been classified as belonging to the IB subfamily , , . These proteins are involved in a variety of processes in both prokaryotes and eukaryotes. Some of these P-ATPases import copper into cells, such as in Arabidopsis sp., which require copper to create functional hormone receptors for ethylene signalling. Other P-ATPases are involved in copper export out of cells, such as occurs with the efflux of hepatic copper into the bile in eukaryotes. In bacteria, some of these P-ATPases play a role in osmotic adaptation. Certain copper ATPases have been implicated in both Wilson and Menkes diseases . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0004008 copper-exporting ATPase activity, 0005524 ATP binding, 0046872 metal ion binding, 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0016020 membrane.
Probab=23.62 E-value=19 Score=18.10 Aligned_cols=50 Identities=10% Similarity=0.232 Sum_probs=33.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHC
Q ss_conf 0000000123333222344432111122221000000--0012344589985
Q gi|254780212|r 54 SSLKADFDEESTILIGISPDSIASHKKFHQKHNLSIT--LLADESKEVLKSY 103 (157)
Q Consensus 54 ~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fp--il~D~~~~~~~~~ 103 (157)
++..+.++++|++++.+|-|+....++.+++-|++|- ++-|++-+..+++
T Consensus 377 ~~~i~~Lk~~Gi~~~mLtGDN~~~A~a~A~~lGI~v~Aev~P~~K~a~ik~l 428 (545)
T TIGR01511 377 KEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGINVRAEVLPDDKAALIKEL 428 (545)
T ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCEEEECCCHHHHHHHHHHH
T ss_conf 9999999875987999866987999999997283333178807689999998
No 207
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=23.30 E-value=67 Score=14.73 Aligned_cols=114 Identities=12% Similarity=0.073 Sum_probs=58.5
Q ss_pred CEEEEEEEECC-CCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--
Q ss_conf 85999965113-67663112---6100000000012333322234443211112222100000000123445899859--
Q gi|254780212|r 31 SKIVLYFYPKD-DTSGCTAE---AINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYD-- 104 (157)
Q Consensus 31 k~vvl~f~~~~-~tp~C~~e---~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~g-- 104 (157)
+..++.|--|- .|-+|..+ -.++++....+++.|..+. ..+....+......+++|++=.+ .++..++
T Consensus 47 k~t~lif~sGkiv~tGa~s~~~a~~a~~k~~~~l~~~g~~~~---~~~~~~v~NIvat~~l~~~i~L~---~la~~~~~~ 120 (174)
T cd00652 47 KTTALIFSSGKMVITGAKSEEDAKLAARKYARILQKLGFPVE---KFPEFKVQNIVASCDLGFPIRLE---ELALKHPEN 120 (174)
T ss_pred CEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---CCCCEEEEEEEEEEECCCCCCHH---HHHHHCHHC
T ss_conf 589999868839997369999999999999999998499743---44550799999996269851499---999757120
Q ss_pred CCCCC-CCCCCCCCCC-CEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 86666-5576654442-107999889997999976888578999999999985
Q gi|254780212|r 105 VWKEK-SMFGKKYMGV-VRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 105 v~~~~-~~~~~~~~~~-~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L 155 (157)
+..++ .+.|.-+... .+.+++|=..|+|.-. |. ++.+++.++++.+
T Consensus 121 ~~YePE~fPGliyr~~~pk~~~liF~sGkvvit--Ga---ks~~~~~~Ai~~i 168 (174)
T cd00652 121 ASYEPELFPGLIYRMDEPKVVLLIFVSGKIVIT--GA---KSREDIYEAVEKI 168 (174)
T ss_pred EEECCCCCCEEEEEECCCCEEEEEECCCEEEEE--CC---CCHHHHHHHHHHH
T ss_conf 066876585389997899789999779879997--47---9999999999999
No 208
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=22.48 E-value=69 Score=14.63 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=11.7
Q ss_pred EEEEECCCCEEEEEE
Q ss_conf 799988999799997
Q gi|254780212|r 122 TTFLIDEKGIIAQIW 136 (157)
Q Consensus 122 ~tfiid~~G~I~~~~ 136 (157)
.++|++|+|.++...
T Consensus 209 ~S~Ii~P~G~~l~~~ 223 (253)
T cd07197 209 GSMIVDPDGEVLAEA 223 (253)
T ss_pred EEEEECCCCCEEEEC
T ss_conf 579995998298635
No 209
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=22.19 E-value=11 Score=19.45 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=33.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCC
Q ss_conf 3112610000000001233332223444------321111222210000000
Q gi|254780212|r 46 CTAEAINFSSLKADFDEESTILIGISPD------SIASHKKFHQKHNLSITL 91 (157)
Q Consensus 46 C~~e~~~l~~~~~~~~~~gv~vv~is~d------~~~~~~~~~~~~~~~fpi 91 (157)
...|+..+++..++|++.|+.+++-+.+ +.....++++++|++.|-
T Consensus 77 ~d~El~~la~~~~~l~~~gi~v~~~~~e~i~~~~DK~~~~~~l~~~gip~P~ 128 (325)
T PRK12767 77 IDPELPLLAQHRDEFKEIGVKVLVSSKEVIEICNDKWLTYEFLKENGINTPK 128 (325)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCC
T ss_conf 8502668999999999679989569799999854999999999975999898
No 210
>pfam05768 DUF836 Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.
Probab=22.17 E-value=24 Score=17.47 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=26.2
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 9651136766311261000000000123333222344432111122221000000001
Q gi|254780212|r 36 YFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLA 93 (157)
Q Consensus 36 ~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~ 93 (157)
.+|-+..|+.|-.-...+.+.. ...++.+.-|..++.+ ++.++|+...|++.
T Consensus 3 ~Ly~r~gChLCe~a~~~L~~~~---~~~~~~~~~vdI~~d~---~L~~~Y~~~IPVl~ 54 (76)
T pfam05768 3 TLYGKPGCHLCEGAKEVLAELE---AALGFDLERIDIDDDE---ELFARYGLEIPVLA 54 (76)
T ss_pred EEEECCCCCHHHHHHHHHHHHH---HCCCCEEEEEECCCCH---HHHHHHCCCCCEEE
T ss_conf 9991899573899999999875---3459559999888998---99998488789899
No 211
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=22.08 E-value=71 Score=14.58 Aligned_cols=116 Identities=11% Similarity=0.084 Sum_probs=58.8
Q ss_pred CCEEEEEEEECC-CCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC-
Q ss_conf 985999965113-676631126---100000000012333322234443211112222100000000123445899859-
Q gi|254780212|r 30 GSKIVLYFYPKD-DTSGCTAEA---INFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYD- 104 (157)
Q Consensus 30 gk~vvl~f~~~~-~tp~C~~e~---~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~g- 104 (157)
-|.+++.|--|- .|-+|..+- .++++....+++.|..... ......+......+++|++-.+ .++..+.
T Consensus 46 Pk~t~liF~SGK~v~TGakS~~~a~~a~~k~~~~l~~~g~~~~~---~~~~~v~NiVas~~~~~~i~L~---~la~~~~~ 119 (174)
T cd04518 46 PKIAALIFRSGKMVCTGAKSVEDLHRAVKEIIKKLKDYGIKVIE---KPEIKVQNIVASADLGREVNLD---AIAIGLPN 119 (174)
T ss_pred CCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC---CCCEEEEEEEEEECCCCCCCHH---HHHHHCCC
T ss_conf 94899998688199986599999999999999999982997445---6644999999992079842189---99976777
Q ss_pred CCCCC-CCCCCCCCCC-CEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 86666-5576654442-1079998899979999768885789999999999850
Q gi|254780212|r 105 VWKEK-SMFGKKYMGV-VRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLK 156 (157)
Q Consensus 105 v~~~~-~~~~~~~~~~-~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L~ 156 (157)
+.+++ .+.|.-+... .+++++|=..|+|+-. |. ++.+++-++++.|.
T Consensus 120 ~~YEPE~FPGLiyR~~~pk~~~liF~SGKivit--Ga---ks~~~~~~a~~~i~ 168 (174)
T cd04518 120 AEYEPEQFPGLVYRLDEPKVVLLLFSSGKMVIT--GA---KSEEDAKRAVEKLL 168 (174)
T ss_pred CCCCCCCCCEEEEEECCCCEEEEEECCCEEEEE--CC---CCHHHHHHHHHHHH
T ss_conf 727855374179993799789999879849998--67---99999999999999
No 212
>PRK10291 glyoxalase I; Provisional
Probab=21.68 E-value=72 Score=14.53 Aligned_cols=58 Identities=17% Similarity=0.108 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 33322234443211112222100000000123445899859866665576654442107999889997999976888
Q gi|254780212|r 64 STILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVT 140 (157)
Q Consensus 64 gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~ 140 (157)
+..=+|+++|+.++..+-.++.|+++.. +... ...+.....||-||||.-+.+...-.
T Consensus 65 g~gHiA~~VdDi~~~~~~l~~~G~~v~~----------------~~~~---~~~g~~~~aFv~DPDGy~IElie~~~ 122 (129)
T PRK10291 65 AYGHIALSVDNAAEACEKIRQNGGNVTR----------------EAGP---VKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred CEEEEEEEECCHHHHHHHHHHCCCCEEE----------------CCCC---CCCCCEEEEEEECCCCCEEEEEECCC
T ss_conf 5789999819999999999974990435----------------6767---89995589999999998899998786
No 213
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family; InterPro: IPR005692 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane . The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex . ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009706 chloroplast inner membrane.
Probab=21.67 E-value=72 Score=14.54 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=53.2
Q ss_pred CCCEEEECCCCCEEEHHHHCCCEEE-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC
Q ss_conf 3730788699978828986998599-996511367663112610000000001233332223444321111222--2100
Q gi|254780212|r 10 APHFVLPSNDEQEISLLALGGSKIV-LYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFH--QKHN 86 (157)
Q Consensus 10 aP~f~l~~~~g~~~~l~~l~gk~vv-l~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~--~~~~ 86 (157)
.|=|++.|.+|+.+-.++-.|.+++ |+.++-.. ...=+..++....+++. ++.|+-||.|....++.-. ..-.
T Consensus 88 ~~VfTv~~~~~~~~~~~~~~~~K~~G~l~~~QED---A~aFL~~~~~~k~~~~~-~~~V~Pi~L~~V~~l~~~~anqtdP 163 (289)
T TIGR00995 88 TSVFTVSNAQNEFVLISDNDGEKSIGLLIFRQED---AEAFLAQLRKRKKELKS-QAKVVPITLDQVYKLKVEGANQTDP 163 (289)
T ss_pred CEEEEEEECCCCEEEEECCCCCCEEEEEEEEECC---HHHHHHHHHHHHHHHCC-CCEEEEEEHHHEEEEEECCCCCCCC
T ss_conf 6169998089866999858998079999875215---68999999862022047-6149985310055664227775575
Q ss_pred CCCCCHHHHH
Q ss_conf 0000001234
Q gi|254780212|r 87 LSITLLADES 96 (157)
Q Consensus 87 ~~fpil~D~~ 96 (157)
+.|.++-||-
T Consensus 164 ~~F~f~P~P~ 173 (289)
T TIGR00995 164 IGFRFLPDPV 173 (289)
T ss_pred CEEEECCCHH
T ss_conf 0354358758
No 214
>TIGR01901 adhes_NPXG filamentous haemagglutinin family N-terminal domain; InterPro: IPR008638 This entry represents a conserved domain found near the N-terminus of a number of large, repetitive bacterial proteins, including many proteins of over 2500 amino acids. A number of the members of this family have been designated adhesins, filamentous haemagglutinins, haem/haemopexin-binding protein, etc. Members generally have a signal sequence, then an intervening region, then the region described in this entry. Following this region, proteins typically have regions rich in repeats but may show no homology between the repeats of one member and the repeats of another. This domain is suggested to be a carbohydrate-dependent haemagglutination activity site . In Bordetella pertussis, the infectious agent in childhood whooping cough, filamentous haemagglutinin (FHA) is a surface-exposed and secreted protein that acts as a major virulence attachment factor, functioning as both a primary adhesin and an immunomodulator to bind the bacterial to cells of the respiratory epithelium . The FHA molecule has a globular head that consists of two domains: a shaft and a flexible tail. Its sequence contains two regions of tandem 19-residue repeats, where the repeat motif consists of short beta-helical strands separated by beta-turns ..
Probab=21.65 E-value=62 Score=14.93 Aligned_cols=12 Identities=50% Similarity=0.827 Sum_probs=10.4
Q ss_pred EEEEECCCCEEE
Q ss_conf 799988999799
Q gi|254780212|r 122 TTFLIDEKGIIA 133 (157)
Q Consensus 122 ~tfiid~~G~I~ 133 (157)
-+||+||+|++.
T Consensus 67 ~vfl~NPNGI~f 78 (97)
T TIGR01901 67 QVFLINPNGIIF 78 (97)
T ss_pred EEEEECCCCEEE
T ss_conf 499883897586
No 215
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235 This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=21.16 E-value=74 Score=14.47 Aligned_cols=92 Identities=13% Similarity=0.237 Sum_probs=51.7
Q ss_pred CCCCCCEEEECCCCCEEEHHH-HC-----CCEEEEEEEECCCCCCCCCC-CCCCCCCCCCCC----CCCCCCCCCC----
Q ss_conf 865373078869997882898-69-----98599996511367663112-610000000001----2333322234----
Q gi|254780212|r 7 GDKAPHFVLPSNDEQEISLLA-LG-----GSKIVLYFYPKDDTSGCTAE-AINFSSLKADFD----EESTILIGIS---- 71 (157)
Q Consensus 7 G~~aP~f~l~~~~g~~~~l~~-l~-----gk~vvl~f~~~~~tp~C~~e-~~~l~~~~~~~~----~~gv~vv~is---- 71 (157)
-+++|.|+-||..=.=+...+ |. |-.-+.|.. -|+.| |+.+-....=|. -.|++-+++=
T Consensus 233 ~gkFP~f~~PdpsYHGl~f~E~~g~~~~~G~~~~Afi~------~~Rv~~LRD~Gaa~sPFnAFLllQGLETLsLR~ERH 306 (434)
T TIGR01326 233 PGKFPLFTTPDPSYHGLVFTETFGEFEGLGLGNIAFIV------KARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERH 306 (434)
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHEEE------EEEEEECHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87477788888865871265315575777850000034------446742210033401789999998666787678888
Q ss_pred CCCCCCCCCCCCCCC----CCCCCH-HHHHHHHHHHCC
Q ss_conf 443211112222100----000000-123445899859
Q gi|254780212|r 72 PDSIASHKKFHQKHN----LSITLL-ADESKEVLKSYD 104 (157)
Q Consensus 72 ~d~~~~~~~~~~~~~----~~fpil-~D~~~~~~~~~g 104 (157)
.++..++++|.++|. ++||=| +++.++.+|+|-
T Consensus 307 ~~NA~kVA~fL~~Hp~V~wV~YPGL~s~~~h~lAkkYl 344 (434)
T TIGR01326 307 VENALKVAEFLEAHPKVAWVNYPGLASHPHHALAKKYL 344 (434)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 89999999997278844513488878875378899874
No 216
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=20.95 E-value=75 Score=14.44 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=10.6
Q ss_pred EEEECCCCEEEEE
Q ss_conf 9998899979999
Q gi|254780212|r 123 TFLIDEKGIIAQI 135 (157)
Q Consensus 123 tfiid~~G~I~~~ 135 (157)
+.||||+|.|...
T Consensus 248 S~Ii~P~G~vlae 260 (302)
T cd07569 248 SCIVAPTGEIVAQ 260 (302)
T ss_pred CEEECCCCCEEEE
T ss_conf 1899899998760
No 217
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=20.94 E-value=25 Score=17.34 Aligned_cols=50 Identities=8% Similarity=0.135 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHC
Q ss_conf 0000000123333222344432111122221000000--0012344589985
Q gi|254780212|r 54 SSLKADFDEESTILIGISPDSIASHKKFHQKHNLSIT--LLADESKEVLKSY 103 (157)
Q Consensus 54 ~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fp--il~D~~~~~~~~~ 103 (157)
.+..+++++.|++++.+|-|++.+.++.+++.|++|. ++-..+.++.+++
T Consensus 572 ~~aI~~Lk~~Gi~v~mlTGD~~~ta~~iA~~lGId~~a~l~PedK~~~V~~L 623 (739)
T PRK11033 572 AQAISELKALGIKGVMLTGDNPRAAAAIAGELGLDFKAGLLPEDKVKAVTAL 623 (739)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCEECCCCHHHHHHHHHHH
T ss_conf 9999999986990799789977999999998299810376969999999998
No 218
>KOG1752 consensus
Probab=20.93 E-value=47 Score=15.69 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=13.6
Q ss_pred HCCCEEEEEEEECCCCCCCCC
Q ss_conf 699859999651136766311
Q gi|254780212|r 28 LGGSKIVLYFYPKDDTSGCTA 48 (157)
Q Consensus 28 l~gk~vvl~f~~~~~tp~C~~ 48 (157)
...+++|+|. .+|||.|..
T Consensus 11 i~~~~VVifS--Ks~C~~c~~ 29 (104)
T KOG1752 11 ISENPVVIFS--KSSCPYCHR 29 (104)
T ss_pred HHCCCEEEEE--CCCCCHHHH
T ss_conf 6239879997--785736899
No 219
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=20.43 E-value=77 Score=14.37 Aligned_cols=114 Identities=10% Similarity=0.092 Sum_probs=57.6
Q ss_pred CCEEEEEEEECC-CCCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 985999965113-67663112--6-1000000000123333222344432111122221000000001234458998598
Q gi|254780212|r 30 GSKIVLYFYPKD-DTSGCTAE--A-INFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDV 105 (157)
Q Consensus 30 gk~vvl~f~~~~-~tp~C~~e--~-~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv 105 (157)
-+..++.|--|- .|-+|..+ . .++++....+++.|..+ . ......+......+++|++=.+ .++.+++.
T Consensus 46 Pk~~~lIf~SGkiv~tGa~s~~~a~~a~~k~~~~l~~~g~~~---~-~~~~~v~NiVas~~~~~~i~L~---~la~~~~~ 118 (174)
T cd04516 46 PKTTALIFSSGKMVCTGAKSEDDSKLAARKYARIIQKLGFPA---K-FTDFKIQNIVGSCDVKFPIRLE---GLAHAHKQ 118 (174)
T ss_pred CCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCC---C-CCCEEEEEEEEEEECCCCCCHH---HHHHHCCC
T ss_conf 937999975882999647999999999999999999859986---6-5761799999997469863699---99976732
Q ss_pred ---CCCCCCCCCCCCCC-CEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf ---66665576654442-107999889997999976888578999999999985
Q gi|254780212|r 106 ---WKEKSMFGKKYMGV-VRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 106 ---~~~~~~~~~~~~~~-~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L 155 (157)
|.+..+.|.-+... .+++++|=..|+|.-. |. ++.+++-++++.+
T Consensus 119 ~~~YePE~FPGLiyR~~~~~~~~liF~sGkvvit--Ga---ks~~~~~~A~~~i 167 (174)
T cd04516 119 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT--GA---KSREEIYQAFENI 167 (174)
T ss_pred CCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEE--CC---CCHHHHHHHHHHH
T ss_conf 3443876587389997799889999679879997--67---9999999999999
No 220
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=20.35 E-value=77 Score=14.36 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=11.6
Q ss_pred EEEEECCCCEEEEEE
Q ss_conf 799988999799997
Q gi|254780212|r 122 TTFLIDEKGIIAQIW 136 (157)
Q Consensus 122 ~tfiid~~G~I~~~~ 136 (157)
.++|+||+|.|+...
T Consensus 211 ~S~Iv~P~G~ila~~ 225 (255)
T cd07581 211 RSMVVDPLGVVLADL 225 (255)
T ss_pred EEEEECCCCCEEEEC
T ss_conf 599998997497755
No 221
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=20.17 E-value=39 Score=16.15 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=13.1
Q ss_pred HCCCEEEEEEEECCCCC-CCC
Q ss_conf 69985999965113676-631
Q gi|254780212|r 28 LGGSKIVLYFYPKDDTS-GCT 47 (157)
Q Consensus 28 l~gk~vvl~f~~~~~tp-~C~ 47 (157)
+.||.+|+.-| .||+ +|.
T Consensus 206 laGK~vVV~GY--G~~GkG~A 224 (427)
T PRK05476 206 IAGKVVVVAGY--GDVGKGSA 224 (427)
T ss_pred ECCCEEEEECC--CCCCCHHH
T ss_conf 25737999556--65560089
Done!