HHsearch alignment for GI: 254780212 and conserved domain: pfam00085
>pfam00085 Thioredoxin Thioredoxin. Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise.
Probab=98.03 E-value=2e-05 Score=54.77 Aligned_cols=87 Identities=15% Similarity=0.301 Sum_probs=60.3
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
T Consensus 17 ~~k~vlv~F~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~d---------------------~~~~~~~~~~i~-- 71 (104)
T pfam00085 17 SDKPVLVDFY-APWCGPCKALAPEYEKLAQEYKD-DVKFAKVDAD---------------------ENPDLASEYGVR-- 71 (104)
T ss_pred CCCCEEEEEE-CCCCHHHHHCCHHHHHHCCCCCC-CCCCCCCCCC---------------------CCHHHHHCCCCE--
T ss_conf 8994999998-99985045107044442222211-0122001465---------------------485353247962--
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 6557665444210799988999799997688857899999999998
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~ 154 (157)
T Consensus 72 ----------~~Pti~~~-~~G~~v~~~~G~---~~~e~l~~~i~~ 103 (104)
T pfam00085 72 ----------GFPTIKFF-KNGKKVSDYVGA---RTKDDLVAFIKK 103 (104)
T ss_pred ----------ECCEEEEE-ECCEEEEEEECC---CCHHHHHHHHHH
T ss_conf ----------50908999-899598888789---999999999973