HHsearch alignment for GI: 254780212 and conserved domain: pfam00085

>pfam00085 Thioredoxin Thioredoxin. Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise.
Probab=98.03  E-value=2e-05  Score=54.77  Aligned_cols=87  Identities=15%  Similarity=0.301  Sum_probs=60.3

Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r   29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE  108 (157)
Q Consensus        29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~  108 (157)
T Consensus        17 ~~k~vlv~F~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~d---------------------~~~~~~~~~~i~--   71 (104)
T pfam00085        17 SDKPVLVDFY-APWCGPCKALAPEYEKLAQEYKD-DVKFAKVDAD---------------------ENPDLASEYGVR--   71 (104)
T ss_pred             CCCCEEEEEE-CCCCHHHHHCCHHHHHHCCCCCC-CCCCCCCCCC---------------------CCHHHHHCCCCE--
T ss_conf             8994999998-99985045107044442222211-0122001465---------------------485353247962--


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf             6557665444210799988999799997688857899999999998
Q gi|254780212|r  109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKS  154 (157)
Q Consensus       109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~  154 (157)
T Consensus        72 ----------~~Pti~~~-~~G~~v~~~~G~---~~~e~l~~~i~~  103 (104)
T pfam00085        72 ----------GFPTIKFF-KNGKKVSDYVGA---RTKDDLVAFIKK  103 (104)
T ss_pred             ----------ECCEEEEE-ECCEEEEEEECC---CCHHHHHHHHHH
T ss_conf             ----------50908999-899598888789---999999999973