HHsearch alignment for GI: 254780212 and conserved domain: pfam02630
>pfam02630 SCO1-SenC SCO1/SenC. This family is involved in biogenesis of respiratory and photosynthetic systems. SCO1 is required for a post-translational step in the accumulation of subunits COXI and COXII of cytochrome c oxidase. SenC is required for optimal cytochrome c oxidase activity and maximal induction of genes encoding the light-harvesting and reaction centre complexes of R. capsulatus.
Probab=99.57 E-value=4.9e-15 Score=113.80 Aligned_cols=126 Identities=21% Similarity=0.310 Sum_probs=96.2
Q ss_pred CCEEEECCCCCEEEHHHHCCCEEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCC--CCCCCCCCCC----CCCCCCCCCC
Q ss_conf 73078869997882898699859999651136766-311261000000000123--3332223444----3211112222
Q gi|254780212|r 11 PHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSG-CTAEAINFSSLKADFDEE--STILIGISPD----SIASHKKFHQ 83 (157)
Q Consensus 11 P~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~-C~~e~~~l~~~~~~~~~~--gv~vv~is~d----~~~~~~~~~~ 83 (157)
T Consensus 18 g~F~L~dq~G~~~t~~~l~Gk~~lv~Fg-fT~CpdiCP~~~~~l~~~~~~l~~~~~~v~~v~iTvDPerDTpe~L~~Y~~ 96 (159)
T pfam02630 18 GPFTLIDQNGKNFTSENLKGKLSLIYFG-FTNCPDICPPALDRLTDIIKKLKAENIDVQPVFISVDPERDTPKVLKEYLK 96 (159)
T ss_pred CCEEEEECCCCEECHHHHCCCEEEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 9828982899997679959988999998-889996458999999999998530477559999996248899999999999
Q ss_pred CCCCCCCCHH---HHHHHHHHHCCCCCCCCCCC---CCCCCCCE-EEEEECCCCEEEEEEC
Q ss_conf 1000000001---23445899859866665576---65444210-7999889997999976
Q gi|254780212|r 84 KHNLSITLLA---DESKEVLKSYDVWKEKSMFG---KKYMGVVR-TTFLIDEKGIIAQIWK 137 (157)
Q Consensus 84 ~~~~~fpil~---D~~~~~~~~~gv~~~~~~~~---~~~~~~~r-~tfiid~~G~I~~~~~ 137 (157)
T Consensus 97 ~f~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~y~v~Hs~~~~LiD~~G~i~~~y~ 157 (159)
T pfam02630 97 NFHPSFIGLTGTTDEIKSVAKKFKVFYSKVIVDKPEQDYLVDHSSFFYLIDPDGKILKHYN 157 (159)
T ss_pred HCCCCCCEEECCHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCEEEEECCCCCEEEECC
T ss_conf 7299855348999999999997186089646568998854755777999969998974517