RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780212|ref|YP_003064625.1| bacterioferritin comigratory
protein [Candidatus Liberibacter asiaticus str. psy62]
(157 letters)
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 155 bits (392), Expect = 5e-39
Identities = 51/161 (31%), Positives = 90/161 (55%), Gaps = 4/161 (2%)
Query: 1 MTSLSVGDKAPHFV----LPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSL 56
+ +++GD H + L + +L +VLYFYPKD+T G + E + F+ L
Sbjct: 18 GSHMNIGDTLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLL 77
Query: 57 KADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKY 116
F++ + ++G+S DS+ SH F K + L++D + K++DV KEK+M+G++
Sbjct: 78 LPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEKTMYGRQV 137
Query: 117 MGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLKQ 157
+G+ R+TFLI I + W+ V + HA+ VL +K+ +
Sbjct: 138 IGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAHAE 178
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreductase; HET: BIH; 1.47A {Xanthomonas campestris
PV} PDB: 3gkk_A 3gkm_A
Length = 163
Score = 132 bits (332), Expect = 4e-32
Identities = 52/154 (33%), Positives = 91/154 (59%)
Query: 4 LSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE 63
L + L + + +L A G +V+YFYPKD T G T E ++F++L +FD+
Sbjct: 9 LELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKA 68
Query: 64 STILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTT 123
++G+S DS+ SH F K + L++D + + +++DV KEK+M+GK+ +G+ R+T
Sbjct: 69 GAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERST 128
Query: 124 FLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLKQ 157
FL+ +G + Q W+ V + HA +VL +K+ +
Sbjct: 129 FLLSPEGQVVQAWRKVKVAGHADAVLAALKAHAK 162
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 128 bits (324), Expect = 4e-31
Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 13/166 (7%)
Query: 3 SLSVGDKAPHFVLPSNDEQEISLLA-LGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFD 61
L +GD AP+F I LG S +L+ +P+D T CT E + L +F
Sbjct: 4 GLLLGDVAPNFEAN-TTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFA 62
Query: 62 EESTILIGISPDSIASHKKFHQKHN----------LSITLLADESKEVLKSYDVWKEKSM 111
+ + LI +S DS+ H + + N L ++ D ++E+ +
Sbjct: 63 KRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEK 122
Query: 112 FGKKYMGVVRTTFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVKSLK 156
K R F+ + P T + +L++V SL+
Sbjct: 123 DEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQ 168
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 116 bits (291), Expect = 3e-27
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 20/170 (11%)
Query: 1 MTS--LSVGDKAPHF----VLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFS 54
M+ + AP F ++P+ +++SL + G +VL+FYP D T C E I FS
Sbjct: 1 MSCGAAKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFS 60
Query: 55 SLKADFDEESTILIGISPDSIASHKKFHQKH-------NLSITLLADESKEVLKSYDVWK 107
F E +T +I S DS SH ++ ++I +LAD++K + ++Y V
Sbjct: 61 DDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLD 120
Query: 108 EKSMFGKKYMGVVRTTFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVKSLK 156
E S R F+ID G + QI + + + + V+++V++L+
Sbjct: 121 EDSGVA------YRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQ 164
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 111 bits (279), Expect = 7e-26
Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 14/159 (8%)
Query: 6 VGDKAPHFVLPS---NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62
+ K F + + E++ G V +FYP D T E + + + +
Sbjct: 3 INTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQK 62
Query: 63 ESTILIGISPDSIASHKKFHQKH----NLSITLLADESKEVLKSYDVWKEKSMFGKKYMG 118
+ +S D+ +HK +H + ++ D + + +++D +E
Sbjct: 63 LGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLAD---- 118
Query: 119 VVRTTFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVKSLK 156
R TF++D +GII I + A +L+ +K+ +
Sbjct: 119 --RATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 155
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 109 bits (274), Expect = 2e-25
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 11/164 (6%)
Query: 3 SLSVGDKAPHFVLPSNDEQEISLLA-LGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFD 61
+++G+ P+F + ++ LG S VL+ +P+D T T E L+ DF
Sbjct: 2 GITLGEVFPNFEAD-STIGKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFK 60
Query: 62 EESTILIGISPDSIASHKKFHQ--------KHNLSITLLADESKEVLKSYDVWKEKSMFG 113
+ LI +S D++A HK++ + K ++ ++ADE++E+ +
Sbjct: 61 KRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTS 120
Query: 114 KKYMGVVRTTFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVKSLK 156
R F+I + P T + +L+++ SL+
Sbjct: 121 TGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQ 164
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10
Length = 220
Score = 109 bits (273), Expect = 3e-25
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 10/164 (6%)
Query: 3 SLSVGDKAPHFVLPSNDEQ-EISLLA-LGGSKIVLYFYPKDDTSGCTAEAINFSSLKADF 60
+G P+F ++ + L + S +L+ +P D T CT E + DF
Sbjct: 2 GYHLGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDF 61
Query: 61 DEESTILIGISPDSIASHKKFHQKH-------NLSITLLADESKEVLKSYDVWKEKSMFG 113
+ + LIG S +S SH K+ + I ++ DES+E+ + E+
Sbjct: 62 LKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDI 121
Query: 114 KKYMGVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVLKMVKSLK 156
R F I + I P T +A +L+++KSL+
Sbjct: 122 TGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQ 165
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 105 bits (264), Expect = 4e-24
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 20/169 (11%)
Query: 1 MTSLSVGDKAPHFVLPS----NDEQEISLLALGGSK-IVLYFYPKDDTSGCTAEAINFSS 55
M V KA +F N+ + L + G K L FYP + T C E I F+
Sbjct: 22 MKLSLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNK 81
Query: 56 LKADFDEESTILIGISPDSIASHKKFHQKH-------NLSITLLADESKEVLKSYDVWKE 108
DF+ ++ L+GIS DS+ SH + N+ TL++D +K++ K+Y+V +
Sbjct: 82 HIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYD 141
Query: 109 KSMFGKKYMGVVRTTFLIDEKGII-AQIWKPVTLKNHAQSVLKMVKSLK 156
S +R F+ID+ G + Q + + + Q VL+ + S+
Sbjct: 142 NSFA-------LRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSII 183
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 103 bits (257), Expect = 2e-23
Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 7/143 (4%)
Query: 4 LSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE 63
VG+ +F+L ND +++L + VL +P DT C F+ A
Sbjct: 17 PQVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN- 75
Query: 64 STILIGISPDSIASHKKFHQKHNLS--ITLLADESKEVLKSYDVWKEKSMFGKKYMGVVR 121
TI++ IS D + +F + T+ + + V + G R
Sbjct: 76 -TIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQ---TGPLAGLTSR 131
Query: 122 TTFLIDEKGIIAQIWKPVTLKNH 144
++DE+ + +K
Sbjct: 132 AVIVLDEQNNVLHSQLVEEIKEE 154
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix K1} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 102 bits (254), Expect = 5e-23
Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 14/160 (8%)
Query: 6 VGDKAPHFVLPSNDEQE--ISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE 63
+G++ P + ++ G VL+ +P D T CT E ++F+ DF
Sbjct: 7 IGERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL 66
Query: 64 STILIGISPDSIASHKKF------HQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYM 117
LIG+S DS+ SH K+ H + ++AD V + + + +
Sbjct: 67 GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGL-----LHAESAT 121
Query: 118 GVVRTTFLIDEKGII-AQIWKPVTLKNHAQSVLKMVKSLK 156
VR F++D +G+I ++ P+ L +L++VK+LK
Sbjct: 122 HTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALK 161
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog,
DTT, oxidoreductase; 1.45A {Homo sapiens} PDB: 2vl3_A
1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Length = 173
Score = 101 bits (253), Expect = 6e-23
Identities = 27/159 (16%), Positives = 58/159 (36%), Gaps = 7/159 (4%)
Query: 4 LSVGDKAPHFVLPSNDE-QEISLLAL-GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFD 61
+ VGD P + + +++L L G K VL+ P T GC+ + +A+
Sbjct: 15 IKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEAL 74
Query: 62 EE----STILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYM 117
+ + ++ + K + LLAD + K D+ + S+
Sbjct: 75 KAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGN 134
Query: 118 GVVRTTFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVKSL 155
++ ++ + GI+ + +P ++ L
Sbjct: 135 RRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 173
>1hd2_A Peroxiredoxin 5 residues 54-214; antioxidant enzyme, thioredoxin
peroxidase, thioredoxin fold; 1.5A {Homo sapiens} SCOP:
c.47.1.10 PDB: 1h4o_A 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A
Length = 161
Score = 101 bits (252), Expect = 9e-23
Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 7/159 (4%)
Query: 4 LSVGDKAPHFVLPSNDE-QEISLLAL-GGSKIVLYFYPKDDTSGCTAEAINFSSLKA--- 58
+ VGD P + + +++L L G K VL+ P T GC+ + +A
Sbjct: 3 IKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEAL 62
Query: 59 -DFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYM 117
+ + ++ + K + LLAD + K D+ + S+
Sbjct: 63 KAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGN 122
Query: 118 GVVRTTFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVKSL 155
++ ++ + GI+ + +P ++ L
Sbjct: 123 RRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 161
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 97.1 bits (241), Expect = 2e-21
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 4 LSVGDKAPHF----VLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKAD 59
AP F ++P+ ++++L + G +VL+FYP D T C E FS +
Sbjct: 6 AEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKE 65
Query: 60 FDEESTILIGISPDSIASHKKFHQKH-------NLSITLLADESKEVLKSYDVWKEKSMF 112
F + ++ S DS SH + ++I +LAD++K ++KSY V KE+
Sbjct: 66 FSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGV 125
Query: 113 GKKYMGVVRTTFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVKSLK 156
R F+ID K + QI + + L++VK+ +
Sbjct: 126 A------YRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ 164
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A
{Arenicola marina}
Length = 167
Score = 96.7 bits (240), Expect = 2e-21
Identities = 26/163 (15%), Positives = 55/163 (33%), Gaps = 13/163 (7%)
Query: 1 MTSLSVGDKAPHFVLPSNDE-QEISLLAL-GGSKIVLYFYPKDDTSGCTAEAINFSSLKA 58
M + GDK P + ++++ L G K VL+ P T G + + +A
Sbjct: 1 MP-IKEGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQA 59
Query: 59 DFDEESTILIGISPDSI----ASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGK 114
+ I + + +LAD K+ D+ + S
Sbjct: 60 AAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLG 119
Query: 115 KYMGVVRTTFLIDEKGIIAQIW----KPVTLKNHAQSVLKMVK 153
R + +I++ G++ ++ + A ++L +
Sbjct: 120 NVRS-KRYSLVIED-GVVTKVNVEPDGKGLTCSLAPNILSQLG 160
>3hvv_A Thiol peroxidase, scavengase P20; oxidoreductase, TPX,
peroxiredoxin, antioxidant; 1.75A {Escherichia coli
k-12} PDB: 3hvs_A* 1qxh_A* 3i43_A* 3hvx_A
Length = 167
Score = 96.4 bits (239), Expect = 2e-21
Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 9/155 (5%)
Query: 4 LSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE 63
G KA F L + D +++L G + VL +P DT A F+ L + D
Sbjct: 18 PQAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVSAASVRKFNQLATEIDN- 76
Query: 64 STILIGISPDSIASHKKFHQKHN--LSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVR 121
T+++ IS D + +F ITL + E L++Y V G R
Sbjct: 77 -TVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAIAD---GPLKGLAAR 132
Query: 122 TTFLIDEKGIIAQIW--KPVTLKNHAQSVLKMVKS 154
+IDE + +T + ++ L ++K+
Sbjct: 133 AVVVIDENDNVIFSQLVDEITTEPDYEAALAVLKA 167
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 95.9 bits (238), Expect = 3e-21
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 3 SLSVGDKAPHFVLPS---NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKAD 59
+ +G AP F + +E+ L G +VL+FYP D T E I FS+ D
Sbjct: 4 NARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVAPTEIIAFSNRAED 63
Query: 60 FDEESTILIGISPDSIASHKKFHQKH-------NLSITLLADESKEVLKSYDVWKEKSMF 112
F + ++G+S DS +H + L+I LLAD ++ + + Y V K
Sbjct: 64 FRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGI 123
Query: 113 GKKYMGVVRTTFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVKSLK 156
R F+ID KG++ QI + + L++V++ +
Sbjct: 124 ------AYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQ 162
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
SGC, structural genomics consortium, oxidoreductase;
2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Length = 192
Score = 95.2 bits (236), Expect = 5e-21
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 20/165 (12%)
Query: 5 SVGDKAPHFVLPS----NDEQEISLLAL-GGSKIVLYFYPKDDTSGCTAEAINFSSLKAD 59
+ +AP F + N E+SL G ++LYFYP D T C +E I
Sbjct: 1 AFQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDS 60
Query: 60 FDEESTILIGISPDSIASHKKFH-------QKHNLSITLLADESKEVLKSYDVWKEKSMF 112
F E + L+G S DS +H + N+ TL++D SK + +SYDV +S+
Sbjct: 61 FKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVA 120
Query: 113 GKKYMGVVRTTFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVKSLK 156
+ ++ ID++G++ + + L +L+++ +L+
Sbjct: 121 LRAFVL-------IDKQGVVQHLLVNNLALGRSVDEILRLIDALQ 158
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
protein structure initiative, midwest center for
structural genomics; HET: MSE; 1.80A {Chromobacterium
violaceum}
Length = 224
Score = 95.2 bits (236), Expect = 6e-21
Identities = 23/158 (14%), Positives = 52/158 (32%), Gaps = 7/158 (4%)
Query: 4 LSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE 63
GD P F+L + + + +L + + ++ D + + +
Sbjct: 22 PRKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSWP 81
Query: 64 STILIGISPDSIASHKKFHQKHNLSITLL--ADESKEVLKSYDVWKEKSMFGKKYMGVVR 121
LI I+ DS +S + +H L L ++ K Y V
Sbjct: 82 HLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHKRYGVLI---TEYPLSGYTSP 138
Query: 122 TTFLIDEKGIIAQIWKPVTLKNH--AQSVLKMVKSLKQ 157
L D ++ + ++ ++ K+++ +Q
Sbjct: 139 AIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGEQ 176
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
protein structure initiative; 2.30A {Streptococcus
pneumoniae} SCOP: c.47.1.10
Length = 163
Score = 94.5 bits (234), Expect = 1e-20
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 12/156 (7%)
Query: 4 LSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE 63
L VGDKA F L + D + SL G K VL P DT C+ + F+ A D
Sbjct: 16 LQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDN- 74
Query: 64 STILIGISPDSIASHKKFHQKHNL--SITLLADESKEVLKSYDVWKEKSMFGKKYMGVVR 121
T+++ +S D + K++ L +I L + Y + ++ + R
Sbjct: 75 -TVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALL------INEWHLLAR 127
Query: 122 TTFLIDEKGIIAQIW--KPVTLKNHAQSVLKMVKSL 155
F++D I + + + + ++ + K+L
Sbjct: 128 AVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL 163
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 93.3 bits (231), Expect = 2e-20
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 21/165 (12%)
Query: 6 VGDKAPHFVLPS-----NDEQEISLLA-LGGSKIVLYFYPKDDTSGCTAEAINFSSLKAD 59
V AP F P+ ++ L LG + ++L+F+PKD T C E I F D
Sbjct: 3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKD 62
Query: 60 FDEESTILIGISPDSIASHKKFHQKH-------NLSITLLADESKEVLKSYDVWKEKSMF 112
F E+ +IG+S DS H + +S ++AD +K + + YDV E+++
Sbjct: 63 FHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAI- 121
Query: 113 GKKYMGVVRTTFLIDEKGIIAQIWK-PVTLKNHAQSVLKMVKSLK 156
+R FLID+ + + L +A +L+MV +L
Sbjct: 122 ------ALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL 160
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 91.4 bits (226), Expect = 8e-20
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 17/161 (10%)
Query: 6 VGDKAPHFVLPS---NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62
AP++ + + +E+ L G +V +FYP D T C E I F +F
Sbjct: 21 QSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS 80
Query: 63 ESTILIGISPDSIASHKKFHQKHN-------LSITLLADESKEVLKSYDVWKEKSMFGKK 115
+T ++ S DS +H + + I LL+D + ++ K Y V+ E S
Sbjct: 81 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHT-- 138
Query: 116 YMGVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVLKMVKSL 155
+R F+ID+KGI+ QI + + L++V++
Sbjct: 139 ----LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 175
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 91.0 bits (225), Expect = 1e-19
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 17/162 (10%)
Query: 6 VGDKAPHFVLPS---NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62
V AP+F + + +EISL G +VL+FYP D T C E I FS ++F +
Sbjct: 29 VTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD 88
Query: 63 ESTILIGISPDSIASHKKFHQK-------HNLSITLLADESKEVLKSYDVWKEKSMFGKK 115
+ ++ +S DS SH + +++I LL+D +K++ + Y V E
Sbjct: 89 VNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLAL- 147
Query: 116 YMGVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVLKMVKSLK 156
R F+ID G+I + + + + L++VK+ +
Sbjct: 148 -----RGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ 184
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI,
protein structure initiative, TB structural genomics
consortium, TBSGC; 1.75A {Mycobacterium tuberculosis}
SCOP: c.47.1.10 PDB: 1y25_A
Length = 175
Score = 90.7 bits (224), Expect = 1e-19
Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 9/155 (5%)
Query: 4 LSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE 63
+VG AP F L D IS G ++L +P DT C F
Sbjct: 18 PAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTF---DERAAAS 74
Query: 64 STILIGISPDSIASHKKFHQKHN-LSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRT 122
++ +S D + K+F ++ + + Y V G + R
Sbjct: 75 GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTI---ADGPMAGLLARA 131
Query: 123 TFLIDEKGII--AQIWKPVTLKNHAQSVLKMVKSL 155
+I G + ++ + + + ++ L + +
Sbjct: 132 IVVIGADGNVAYTELVPEIAQEPNYEAALAALGAT 166
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC,
oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB:
2h66_A
Length = 213
Score = 88.7 bits (219), Expect = 5e-19
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 20/168 (11%)
Query: 2 TSLSVGDKAPHFVLPS----NDEQEISLLAL-GGSKIVLYFYPKDDTSGCTAEAINFSSL 56
+ VG +AP F + N E++L G ++LYFYP D T C +E I
Sbjct: 19 SPTYVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKA 78
Query: 57 KADFDEESTILIGISPDSIASHKKFH-------QKHNLSITLLADESKEVLKSYDVWKEK 109
F E + L+G S DS +H + N+ TLL+D +K + K Y+V +
Sbjct: 79 LDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDD 138
Query: 110 SMFGKKYMGVVRTTFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVKSLK 156
S+ + ++ ID GI+ + + + +L+++ +++
Sbjct: 139 SVSLRAFVL-------IDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ 179
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 86.5 bits (213), Expect = 2e-18
Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 8/158 (5%)
Query: 2 TSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFD 61
+ VGD+AP F + +N +E SL + G ++ P DT C A+ F+ A
Sbjct: 16 QEVKVGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLG 75
Query: 62 EESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVR 121
+ + I + + TL +++ V+ K+ + R
Sbjct: 76 DVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVY------IKELRLLAR 129
Query: 122 TTFLIDEKGIIAQIWKPVTLKNHA--QSVLKMVKSLKQ 157
+ F++DE G + NH + ++ K+L +
Sbjct: 130 SVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALVK 167
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant,
oxidoreductase, structural genomics, NPPSFA; 1.85A
{Aquifex aeolicus VF5}
Length = 171
Score = 85.3 bits (210), Expect = 6e-18
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 8/157 (5%)
Query: 2 TSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFD 61
L VGD+AP V+ + D QE + V+ P DT C E F+ + A +
Sbjct: 19 PELKVGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGME 78
Query: 62 EESTILIGISPDSIASHKKFHQKHN-LSITLLADESKEVLKSYDVWKEKSMFGKKYMGVV 120
+S D + K+F + N ++T+ +D ++ Y V + G +
Sbjct: 79 GVDV--TVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDMEKYGVLIGE---GALKGILA 133
Query: 121 RTTFLIDEKGII--AQIWKPVTLKNHAQSVLKMVKSL 155
R F+ID++G + Q+ +T + + V+ VK L
Sbjct: 134 RAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL 170
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in europe, spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 85.0 bits (209), Expect = 8e-18
Identities = 37/176 (21%), Positives = 76/176 (43%), Gaps = 27/176 (15%)
Query: 1 MTSLSVGDKAPHFVLPS---------------NDEQEISLLALGGSKIVLYFYPKDDTSG 45
M L++GD+ P + L + + I+ G V++F+PKD T
Sbjct: 1 MPLLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFV 60
Query: 46 CTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHN----LSITLLADESKEVLK 101
C E FS L +F++ ++G+S DS +H ++ +HN L +L+D +E+ +
Sbjct: 61 CPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQ 120
Query: 102 SYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVKSLK 156
+ V + + ++D I + ++ + VL+++ +L+
Sbjct: 121 AAGVLNADGVADRVTF-------IVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ 169
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 83.7 bits (206), Expect = 2e-17
Identities = 33/160 (20%), Positives = 65/160 (40%), Gaps = 15/160 (9%)
Query: 6 VGDKAPHFVLPS----NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFD 61
+G + F + D E++ L G ++ FYP D + C E + A+
Sbjct: 3 IGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELK 62
Query: 62 EESTILIGISPDSIASHK----KFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYM 117
+ + +S D+ HK ++ ++ D S+ + + +DV E++
Sbjct: 63 KLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLA---- 118
Query: 118 GVVRTTFLIDEKGIIAQI-WKPVTLKNHAQSVLKMVKSLK 156
R TF+ID G+I I + A +++ VK+ +
Sbjct: 119 --DRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQ 156
>3drn_A Peroxiredoxin, bacterioferritin comigratory protein homolog;
oxidoreductase; HET: CIT; 2.15A {Sulfolobus
solfataricus}
Length = 161
Score = 80.9 bits (198), Expect = 1e-16
Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 4 LSVGDKAPHFVLPSNDEQEISLLAL-GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62
+ VGDKAP F +++ ++ISL G IVLYFYPKDDT G T EA F +
Sbjct: 2 VKVGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKD 61
Query: 63 ESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRT 122
++IG+S D I SHK+F +K+ L L++D K++ + Y ++ R
Sbjct: 62 YDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAK--------GFILPARI 113
Query: 123 TFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVKSLKQ 157
TF+ID+KGII I+ + NH LK +K +K+
Sbjct: 114 TFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIKE 149
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys
peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces
cerevisiae} SCOP: c.47.1.10
Length = 159
Score = 79.2 bits (194), Expect = 4e-16
Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 10/161 (6%)
Query: 1 MTSLSVGDKAPHFVLPSNDEQEISLLAL-GGSKIVLYFYPKDDTSGCTAEAINFSSLKAD 59
+ L +GD P L + D ISL + +++V++F ++ + +
Sbjct: 4 VNELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQ 63
Query: 60 FDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGV 119
+E + G+S DS+ S KKF K NL LL+D +E + K G
Sbjct: 64 ELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKK------TPLSGS 117
Query: 120 VRTTFLIDEKGII---AQIWKPVTLKNHAQSVLKMVKSLKQ 157
+R+ F+ + + +I V++ + + VL++ + K+
Sbjct: 118 IRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFKE 158
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii}
Length = 157
Score = 78.6 bits (192), Expect = 5e-16
Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 4 LSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE 63
+ +G+ AP F LP + +++ L AL G +VL FYP T CT E F A F++
Sbjct: 4 VEIGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV 63
Query: 64 STILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTT 123
+ +++GIS D S+K F + + L+ T+L+D ++EV+K Y+V E Y+ R
Sbjct: 64 NAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWEFPALP-GYVLAKRAV 122
Query: 124 FLIDEKGIIAQIWKPVTLKNH--AQSVLKMVKSL 155
F+ID++G + W + K+VKSL
Sbjct: 123 FVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1
c.47.1.10
Length = 241
Score = 75.0 bits (184), Expect = 7e-15
Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 19/166 (11%)
Query: 3 SLSVGDKAPHFVLPSNDE---QEISLLAL-GGSKIVLYFYPKDDTSGCTAEAINFSSLKA 58
S G K P + +++ L ++++ P T C++ + + A
Sbjct: 2 SSMEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELA 61
Query: 59 DFD---EESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKK 115
IL+ D+ + + + +I+ + D + E + + K G
Sbjct: 62 PVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLG-- 119
Query: 116 YMGVV--RTTFLIDEKGIIAQIWK------PVTLKNHAQSVLKMVK 153
G R + L+ G++ +++ + A ++LK +
Sbjct: 120 -FGKRSWRYSMLVKN-GVVEKMFIEPNEPGDPFKVSDADTMLKYLA 163
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix K1} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 72.0 bits (175), Expect = 6e-14
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 6/156 (3%)
Query: 4 LSVGDKAPHFVLPSNDEQEISL--LALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFD 61
+ +G+KAP F LP+ D + ++L + G VL F+P + CT E F A +
Sbjct: 5 VELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLE 64
Query: 62 EESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVR 121
+ + ++ IS DS KKF ++ L+ LL+D ++EV+K Y+V+ E K R
Sbjct: 65 KANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAK--R 122
Query: 122 TTFLIDEKGIIAQIWKPVTLKNH--AQSVLKMVKSL 155
F++ G +A W N V++ +
Sbjct: 123 AVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKI 158
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
structural genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis H37RV}
Length = 352
Score = 69.4 bits (169), Expect = 3e-13
Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 24/160 (15%)
Query: 2 TSLSVGDKAPHFV-----LPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSL 56
L AP L + + I L +L G +++ F+ C +
Sbjct: 49 AQLESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFW-AYSCINCQRAIPHVVGW 107
Query: 57 KADFDEESTILIGISPDSIASH------KKFHQKHNLSITLLADESKEVLKSYDVWKEKS 110
+ + +IG+ A K +S + D + +Y
Sbjct: 108 YQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYRNR---- 163
Query: 111 MFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLK 150
+LID G + I N +++++
Sbjct: 164 --------YWPAEYLIDATGTVRHIKFGEGDYNVTETLVR 195
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 66.9 bits (163), Expect = 2e-12
Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 21/156 (13%)
Query: 9 KAPHFVLPS--NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEEST- 65
+ P S + +I+L ++L + + + C +E+ + + +
Sbjct: 36 QLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQW-CAPCRSESDDLQIIHEELQAAGNG 94
Query: 66 -------ILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMG 118
+ I + S + F + L + D S
Sbjct: 95 DTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVP---------AS 145
Query: 119 VVRTTFLIDEKG-IIAQIWKPVTLKNHAQSVLKMVK 153
V+ TT ++D++ A + VT K+ L +V
Sbjct: 146 VIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD 181
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 1.76A {Thermus thermophilus HB27}
Length = 154
Score = 66.4 bits (161), Expect = 3e-12
Identities = 23/158 (14%), Positives = 56/158 (35%), Gaps = 18/158 (11%)
Query: 3 SLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62
++ G+ P F+L Q ++ + +++++ + C AE + +
Sbjct: 4 AVKPGEPLPDFLLLDPKGQPVTPATVSKPAVIVFWASW--CTVCKAEFPGLHRVAEETGV 61
Query: 63 ESTILIGISPDSIASHKKFHQKHNLSITLLA---DESKEVLKSYDVWKEKSMFGKKYMGV 119
++ D+ ++ + + I LLA D EV + V
Sbjct: 62 PFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL------------G 109
Query: 120 VRTTFLIDEKGIIAQIWK-PVTLKNHAQSVLKMVKSLK 156
TF++D +G + ++ + ++L L+
Sbjct: 110 QPWTFVVDREGKVVALFAGRAGREALLDALLLAGADLE 147
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Length = 160
Score = 65.1 bits (157), Expect = 7e-12
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 10/157 (6%)
Query: 4 LSVGDKAPHFVLPSNDEQEISLLALGGSK-IVLYFYPKDDTSGCTAEAINFSSLKADFDE 62
L+VG AP F L ++Q ++L G+K ++L F+P T C E +F+
Sbjct: 9 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN 68
Query: 63 ESTILIGISPDSIASHKKFHQKHNLSITLLA--DESKEVLKSYDVWKEKSMFGKKYMGVV 120
+ + + IS +HK + + + LL+ V ++Y V+ E++
Sbjct: 69 DDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIAN------ 122
Query: 121 RTTFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVKSLK 156
R TF++D GII K + + +L
Sbjct: 123 RGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 159
>3me7_A Putative uncharacterized protein; electron transfer protein,
structural genomics, PSI-2, protein structure
initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Length = 170
Score = 64.9 bits (157), Expect = 7e-12
Identities = 19/143 (13%), Positives = 37/143 (25%), Gaps = 10/143 (6%)
Query: 4 LSVGDKAPH-FVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62
+S+G P L + E L L G I+L + C + +
Sbjct: 1 MSLGTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGT 60
Query: 63 ESTILIGISPDS---------IASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFG 113
I+ K++ + A S+++ K D + M
Sbjct: 61 PGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTA 120
Query: 114 KKYMGVVRTTFLIDEKGIIAQIW 136
++ + I
Sbjct: 121 GNDFIHPNVVVVLSPELQIKDYI 143
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 64.8 bits (157), Expect = 8e-12
Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 15/149 (10%)
Query: 7 GDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTI 66
D+ F + +L G VL+F+ C AEA + S + A + +
Sbjct: 1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWT-PWCPFCNAEAPSLSQVAAANPAVTFV 59
Query: 67 LIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLI 126
+ + + + F K+NL+ T L D + Y+V
Sbjct: 60 -GIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVP------------WQPAFVFY 106
Query: 127 DEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155
G + P + + + V +L
Sbjct: 107 RADGTSTFVNNPTAAMSQDE-LSGRVAAL 134
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 63.5 bits (154), Expect = 2e-11
Identities = 23/149 (15%), Positives = 59/149 (39%), Gaps = 9/149 (6%)
Query: 5 SVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSL-KADFDEE 63
+ AP F + D + S +L G ++ F+ C +E + + K
Sbjct: 9 ARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFF-ATWCPPCRSEIPDMVQVQKTWASRG 67
Query: 64 STILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTT 123
T + + + + K + + + ++ E++++++ + + + G + T+
Sbjct: 68 FTFVGIAVNEQLPNVKNYMKTQGIIYPVMMAT-PELIRAFNGYIDGGITG------IPTS 120
Query: 124 FLIDEKGIIAQIWKPVTLKNHAQSVLKMV 152
F+ID G ++ + K ++KM
Sbjct: 121 FVIDASGNVSGVIVGPRSKADFDRIVKMA 149
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold,
oxidoreductase; 1.62A {Populus trichocarpa} SCOP:
c.47.1.10
Length = 162
Score = 61.9 bits (149), Expect = 6e-11
Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 11/164 (6%)
Query: 1 MTSLSVGDKAPHFVLPSNDE----QEISLLAL-GGSKIVLYFYPKDDTSGCTAEAINFSS 55
M ++VGD P L DE QE+S+ +L G K++L+ P T C+ + +
Sbjct: 1 MAPIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFI 60
Query: 56 LKADFDEE----STILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSM 111
KA + + I ++ + N + LAD S + + +
Sbjct: 61 EKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQE 120
Query: 112 FGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155
G R L+D+ + + S ++K L
Sbjct: 121 KGLGTRS-RRFALLVDD-LKVKAANIEGGGEFTVSSAEDILKDL 162
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 60.5 bits (146), Expect = 1e-10
Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 15/159 (9%)
Query: 1 MTSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADF 60
+T S K P D + L G +++ + C E L+
Sbjct: 31 LTMASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWA-TWCVPCRKEMPALDELQGKL 89
Query: 61 DEESTI--LIGISPDSIASHKKFHQKHNLS-ITLLADESKEVLKSYDVWKEKSMFGKKYM 117
+ I I K F ++ NL+ + D+ +V +
Sbjct: 90 SGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGR--------A 141
Query: 118 GVVRTTFLIDEKG-IIAQIWKPVTLKNHAQSVLKMVKSL 155
+ T+ L+D +G IA I P ++ LK++++
Sbjct: 142 LGMPTSVLVDPQGCEIATIAGPAEW--ASEDALKLIRAA 178
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, structural
genomics, PSI-2, protein structure initiative; 1.88A
{Cytophaga hutchinsonii atcc 33406}
Length = 148
Score = 60.4 bits (145), Expect = 2e-10
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 13/157 (8%)
Query: 2 TSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFD 61
L +G KAP+ + L + K + F+ C E
Sbjct: 3 APLLLGKKAPNLYMTDTTGTYRYLYDVQA-KYTILFFWDSQCGHCQQETPKLYDWWLKNR 61
Query: 62 EESTILIGISPD-SIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVV 120
+ + + + KF + + L D +
Sbjct: 62 AKGIQVYAANIERKDEEWLKFIRSKKIGGWLNV---------RDSKNHTDFKITYDIYAT 112
Query: 121 RTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLKQ 157
+++D+ +I I K + +N +++ KSLK
Sbjct: 113 PVLYVLDKNKVI--IAKRIGYENLDDFLVQYEKSLKT 147
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide
exchange, cell inner membrane, CYT C-type biogenesis,
disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB:
3kh9_A
Length = 176
Score = 60.1 bits (145), Expect = 2e-10
Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 18/153 (11%)
Query: 6 VGDKAPHFVLPS--NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE 63
+G P F LPS + + ++ L G ++ + C E + L
Sbjct: 32 IGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTW-CPSCRVEHPELTRLAEQGVVI 90
Query: 64 STILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTT 123
I D+ A+ K ++ HN + ++D + V+ T
Sbjct: 91 --YGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVY------------GAPET 136
Query: 124 FLIDEKGIIAQIWK-PVTLKNHAQSVLKMVKSL 155
+LID++GII V K + + + + L
Sbjct: 137 YLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQL 169
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
TLPA-like family, PSI-2, protein structure initiative;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 55.9 bits (134), Expect = 4e-09
Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)
Query: 2 TSLSVGDKAPHFVLPSNDEQEISL--LALGGSKIVLYFYPKDDTS-GCTAEAINFSSLKA 58
+G AP F LP+ ++I+ A +++ F+ + S +
Sbjct: 3 AKSEIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYK 62
Query: 59 DFDEESTI-LIGISPD-SIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKY 116
+ + I ++GIS D K ++ L + D S K+Y
Sbjct: 63 KYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQV----------CDFGGLNSEVAKQY 112
Query: 117 -MGVVRTTFLIDEKG-IIAQIWKPVTLKNHAQSVLK 150
+ + L+ G I+A+ + LK +++++
Sbjct: 113 SIYKIPANILLSSDGKILAKNLRGEELKKKIENIVE 148
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, protein
structure initiative, midwest center for structural
genomics; 2.20A {Bacteroides fragilis nctc 9343}
Length = 148
Score = 54.4 bits (130), Expect = 1e-08
Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 21/157 (13%)
Query: 2 TSLSVGDKAPHFVLPSNDEQEI--SLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKAD 59
++VG AP+F LP+ +++ S ++L F+ L +
Sbjct: 3 AKVTVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWA-SWCDPQPEANAELKRLNKE 61
Query: 60 FDEES-----TILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGK 114
+ + I + I ++ + K + S E K Y +
Sbjct: 62 YKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAIL-------- 113
Query: 115 KYMGVVRTTFLIDEKG-IIAQIWKPVTLKNHAQSVLK 150
+ T L+ G I+A+ + L + +LK
Sbjct: 114 ----TLPTNILLSPTGKILARDIQGEALTGKLKELLK 146
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding
protein, mitochondrial assembly factor, redox, nickel,
disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP:
c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A
2hrf_A 2hrn_A 1wp0_A
Length = 164
Score = 53.8 bits (128), Expect = 2e-08
Identities = 22/159 (13%), Positives = 53/159 (33%), Gaps = 15/159 (9%)
Query: 13 FVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTIL----- 67
F L ++ + + G +++YF C E + + D +T+
Sbjct: 6 FSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPL 65
Query: 68 ---IGISPDSIASHKKFHQKHNLSI---TLLADESKEVLKSYDVWKEKSMFGKKYMGVV- 120
I D+ + + ++ + + T +E +V ++Y V+ + +V
Sbjct: 66 FISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVD 125
Query: 121 --RTTFLIDEKGIIAQIWKP-VTLKNHAQSVLKMVKSLK 156
+LI G + A S+ ++ +
Sbjct: 126 HTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYR 164
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein,
oxidoreductase; 2.80A {Pisum sativum}
Length = 171
Score = 53.3 bits (127), Expect = 2e-08
Identities = 18/149 (12%), Positives = 45/149 (30%), Gaps = 16/149 (10%)
Query: 2 TSLSVGDKAPHFVLP---------SNDEQEISLLAL-GGSKIVLYFYPKDDTSGCTAEA- 50
T + A + L + + + K+V++ P T C+++
Sbjct: 5 TGTDILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHV 64
Query: 51 ---INFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWK 107
+ +S I + I+ + + +I D KS ++
Sbjct: 65 PPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTT 124
Query: 108 EKSMFGKKYMGVVRTTFLIDEKGIIAQIW 136
+ S + R + + + G + +
Sbjct: 125 DLSAGL-LGIRSERWSAYVVD-GKVKALN 151
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural
genomics, montreal- kingston bacterial structural
genomics initiative; 1.70A {Bacillus subtilis} SCOP:
c.47.1.10 PDB: 1on4_A
Length = 174
Score = 53.1 bits (126), Expect = 3e-08
Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 15/166 (9%)
Query: 6 VGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEEST 65
+ + F + D + +SL +L G + F + + C + + L+ E+
Sbjct: 9 LNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENI 68
Query: 66 ILIGISP------DSIASHKKFHQKHNLSI---TLLADESKEVLKSYDVWKEKSMFGKK- 115
+ IS D KKF + LS L S+ ++ + + K++ K
Sbjct: 69 DVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPE 128
Query: 116 ---YMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSV--LKMVKSLK 156
+ + +L+ G + + + V + + +K +LK
Sbjct: 129 GEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSASTLK 174
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein structure initiative; HET: MSE; 1.30A
{Bacteroides fragilis nctc 9343}
Length = 142
Score = 53.0 bits (126), Expect = 3e-08
Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 15/140 (10%)
Query: 6 VGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTA--EAINFSSLKADFDEE 63
+G KA +F + + +L +L+ + + +
Sbjct: 7 LGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAK 66
Query: 64 STILIGISPD-SIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRT 122
++ I PD + KK T D+ + K K+++ + + T
Sbjct: 67 KLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVI-------KNKNLYDLRAI---PT 116
Query: 123 TFLIDEKGIIAQIWKPVTLK 142
+L+D+ + + K TL+
Sbjct: 117 LYLLDKNKTV--LLKDATLQ 134
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest center for structural genomics; HET:
MSE; 2.20A {Corynebacterium glutamicum}
Length = 160
Score = 51.4 bits (122), Expect = 8e-08
Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 16/143 (11%)
Query: 4 LSVGDKAPHFVLPSNDE---QEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADF 60
+S D AP L + + +S L G +V+ + +
Sbjct: 1 MSSLDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMI 60
Query: 61 DEESTILIGISP-------DSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFG 113
DE +IG+ + + K F + + + D +E + K+ + G
Sbjct: 61 DESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEG 120
Query: 114 KKYMGVVRTTFLIDEKGIIAQIW 136
+ L D KG I Q+
Sbjct: 121 T------PSIILADRKGRIRQVQ 137
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 49.0 bits (115), Expect = 4e-07
Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 12/152 (7%)
Query: 5 SVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES 64
S G AP+FVL + + I L L G + L F+ + K +
Sbjct: 1 SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGV 60
Query: 65 TILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTF 124
I+ +S + F + + ++ + ++ + + + TTF
Sbjct: 61 EIVAVNVGESKIAVHNFMKSYGVNFP------------VVLDTDRQVLDAYDVSPLPTTF 108
Query: 125 LIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLK 156
LI+ +G + ++ ++ + ++K +
Sbjct: 109 LINPEGKVVKVVTGTMTESMIHDYMNLIKPGE 140
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 48.6 bits (115), Expect = 6e-07
Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 10 APHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIG 69
F++ + + ++IS+ G K +L+F+ C E F S +S L+
Sbjct: 15 PAVFLMKTIEGEDISI-PNKGQKTILHFWT-SWCPPCKKELPQFQSFYDAHPSDSVKLVT 72
Query: 70 IS----PDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFL 125
++ + + F + + L+ ++ D E++K Y + + T+FL
Sbjct: 73 VNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHIIT------------IPTSFL 120
Query: 126 IDEKGIIAQIW 136
++EKG I +
Sbjct: 121 LNEKGEIEKTK 131
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter pomeroyi DSS, structural
genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 46.6 bits (109), Expect = 2e-06
Identities = 19/148 (12%), Positives = 40/148 (27%), Gaps = 2/148 (1%)
Query: 5 SVGDKAPHFVLPS--NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62
S KAP + N +++L L G IV+ + ++A F E
Sbjct: 1 SNAMKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPE 60
Query: 63 ESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRT 122
+ ++G+ + + + M +
Sbjct: 61 DKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPS 120
Query: 123 TFLIDEKGIIAQIWKPVTLKNHAQSVLK 150
LID+ G + + + +
Sbjct: 121 LLLIDKAGDLRAHHFGDVSELLLGAEIA 148
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold,
electron transfer protein, metal binding protein,
electron transport; NMR {Thermus thermophilus}
Length = 172
Score = 46.4 bits (109), Expect = 3e-06
Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 19/162 (11%)
Query: 9 KAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSL----------KA 58
K F L + L ++L+F C + +
Sbjct: 15 KPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERV 73
Query: 59 DFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMG 118
S P+ + K L ++ + +E +++ V+ +KS +
Sbjct: 74 QVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEY 133
Query: 119 VV---RTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLKQ 157
+V TTF++ E ++ + A++ ++V L+
Sbjct: 134 LVDHTATTFVVKEGRLVLLYS-----PDKAEATDRVVADLQA 170
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural
genomics, midwest center for structural genomics,
protein structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 46.0 bits (107), Expect = 4e-06
Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 7/157 (4%)
Query: 3 SLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62
S V ++ F L + D + ISL +GG +V+ ++ C A L + E
Sbjct: 10 SEEVLEREASFSLTTIDGEVISLNNVGG-DVVILWFMAAWCPSCVYMADLLDRLTEKYRE 68
Query: 63 ESTILIGISPDSIASHK---KFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGV 119
S I I K + + + + V
Sbjct: 69 ISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGSLVEKFNV 128
Query: 120 --VRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKS 154
+ ++D+ + + +SV+K V+
Sbjct: 129 RSIDYIVIMDKSSNVLYAGTTPS-LGELESVIKSVQG 164
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structure
initiative; 2.00A {Bacteroides fragilis nctc 9343}
Length = 142
Score = 45.8 bits (107), Expect = 4e-06
Identities = 16/139 (11%), Positives = 43/139 (30%), Gaps = 9/139 (6%)
Query: 5 SVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES 64
+ G KA F + + L + + F+ D S C F+ + A +
Sbjct: 2 NAGMKAADFTYVTVHGDNSRMSRLKA-QYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVE 60
Query: 65 TILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTF 124
+ + +++ + + ++ + + T +
Sbjct: 61 NGTLRVLAIYPDENREEWATK------AVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIY 114
Query: 125 LIDEKGIIAQIWKPVTLKN 143
L+D + + I K +++
Sbjct: 115 LLDGRKRV--ILKDTSMEQ 131
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein,
NPPSFA; 1.60A {Geobacillus kaustophilus HTA426}
Length = 196
Score = 45.7 bits (107), Expect = 5e-06
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 9/136 (6%)
Query: 2 TSLSVGDKAPHFVLPS-NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADF 60
+G +AP F L + D + L + + + + L D+
Sbjct: 16 NMFPLGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDY 75
Query: 61 DEESTILIGISP--------DSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMF 112
+ + I+ DS + KK ++ L DE++EV K+YD +
Sbjct: 76 MPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDAACTPDFY 135
Query: 113 GKKYMGVVRTTFLIDE 128
+D+
Sbjct: 136 IFDRDLKCVYRGQLDD 151
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin
fold, metal transport, structural genomics,
spine2-complexes; NMR {Homo sapiens}
Length = 171
Score = 45.1 bits (105), Expect = 7e-06
Identities = 19/159 (11%), Positives = 51/159 (32%), Gaps = 15/159 (9%)
Query: 13 FVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGI-- 70
F L + + G +++YF C E + + E +
Sbjct: 9 FHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPV 68
Query: 71 ---------SPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVV- 120
+++A + + L +T + + SY V+ + +V
Sbjct: 69 FITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVD 128
Query: 121 --RTTFLIDEKGIIAQIW-KPVTLKNHAQSVLKMVKSLK 156
+L++ G+ + + + + + SV + + + +
Sbjct: 129 HSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFR 167
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold,
cytochrome C maturation, atomic resolution,
oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP:
c.47.1.10
Length = 156
Score = 42.2 bits (98), Expect = 5e-05
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 27/163 (16%)
Query: 6 VGDKAPHFVLPS--------NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLK 57
+G AP LP + A G ++ + S C L
Sbjct: 10 IGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWA----SWCVPCHDEAPLLT 65
Query: 58 ADFDEESTILIGIS-PDSIASHKKFHQKHNLSITLL-ADESKEVLKSYDVWKEKSMFGKK 115
++ L+GI+ D+ + ++F ++ + D + + V+
Sbjct: 66 ELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVY--------- 116
Query: 116 YMGVVRTTFLIDEKGIIAQIWK-PVTLKNHAQSVLKMVKSLKQ 157
V TF++ +G I P+T N +L ++ +
Sbjct: 117 ---GVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKALK 156
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 42.0 bits (97), Expect = 5e-05
Identities = 27/134 (20%), Positives = 41/134 (30%), Gaps = 13/134 (9%)
Query: 3 SLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62
SL GDKAP F LP + L GS + L F+ + +
Sbjct: 2 SLDKGDKAPDFALPGKT-GVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK 60
Query: 63 ESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRT 122
++ KF + T+ D + + Y V + T
Sbjct: 61 GFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVK------------GMPT 108
Query: 123 TFLIDEKGIIAQIW 136
+FLID G +
Sbjct: 109 SFLIDRNGKVLLQH 122
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding
protein; 1.80A {Saccharomyces cerevisiae} SCOP:
c.47.1.10 PDB: 2b7j_A
Length = 200
Score = 41.0 bits (95), Expect = 1e-04
Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 15/160 (9%)
Query: 13 FVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGI-- 70
F L E + L G ++YF + C E + I +
Sbjct: 24 FHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLF 83
Query: 71 --------SPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVV-- 120
SP + + L +T DE K K Y V+ K +
Sbjct: 84 ITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVD 143
Query: 121 --RTTFLIDEKG-IIAQIWKPVTLKNHAQSVLKMVKSLKQ 157
+L+D +G + + + K +++ VKS
Sbjct: 144 HSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYVP 183
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 37.8 bits (86), Expect = 0.001
Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 20/156 (12%)
Query: 3 SLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62
+ G AP+F LP+ + SL G KIVL + C E + L F +
Sbjct: 14 LVRTGALAPNFKLPTLSGENKSLAQYRG-KIVLVNFWASWCPYCRDEMPSMDRLVKSFPK 72
Query: 63 ESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGV--V 120
+++ ++ + K + ++ + + ++ G +
Sbjct: 73 GDLVVLAVNVEKRFPEKYRRAPVS----------------FNFLSDATGQVQQRYGANRL 116
Query: 121 RTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLK 156
TF++D KGII Q ++ A V+ +KSL+
Sbjct: 117 PDTFIVDRKGIIRQRVTGG-IEWDAPKVVSYLKSLE 151
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10
Length = 136
Score = 36.5 bits (83), Expect = 0.003
Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 17/146 (11%)
Query: 10 APHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIG 69
F + D + +L G K + ++ C EA + A E + + +
Sbjct: 5 QLQFSAKTLDGHDFHGESLLG-KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVA 63
Query: 70 ISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEK 129
A + ++ + T LAD V ++ V +D
Sbjct: 64 GLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVT------------QQPAYAFVDPH 111
Query: 130 GIIAQIWKPVTLKNHAQSVLKMVKSL 155
G + + ++ + + V +L
Sbjct: 112 GNVDVVRGRMS----QDELTRRVTAL 133
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase
(GPX4); human GPX4, selenoprotein, thioredoxin-fold,
anti-oxidatve defense system; 1.55A {Homo sapiens}
Length = 183
Score = 36.1 bits (82), Expect = 0.003
Identities = 17/141 (12%), Positives = 32/141 (22%), Gaps = 13/141 (9%)
Query: 13 FVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISP 72
F D ++L G ++ + IL
Sbjct: 30 FSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCN 89
Query: 73 DSIASHK---------KFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGV---- 119
+ + + W + GK +G
Sbjct: 90 QFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKW 149
Query: 120 VRTTFLIDEKGIIAQIWKPVT 140
T FLID+ G + + + P+
Sbjct: 150 NFTKFLIDKNGCVVKRYGPME 170
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 36.0 bits (82), Expect = 0.004
Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 13/146 (8%)
Query: 1 MTSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADF 60
M+ L P + E+SL +L G + LYF + +
Sbjct: 1 MSGL--AKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH 58
Query: 61 DEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVV 120
++ ++ IS D S + + L D+ V + + +S+
Sbjct: 59 VAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESI--------- 109
Query: 121 RTTFLIDEKG--IIAQIWKPVTLKNH 144
T I+ II + +++
Sbjct: 110 PTLITINADTGAIIGTQARTRVIEDP 135
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 35.4 bits (80), Expect = 0.005
Identities = 10/135 (7%), Positives = 37/135 (27%), Gaps = 10/135 (7%)
Query: 4 LSVGDKAPHFVLPSN--DEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFD 61
+ + P + + +G +++F+ C + + +
Sbjct: 1 MKLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWS-ISCHLCKEAMPQVNEFRDKYQ 59
Query: 62 EESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVR 121
++ ++ P + + T + + + F +Y+
Sbjct: 60 DQLNVVAVHMPR----SEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYV---P 112
Query: 122 TTFLIDEKGIIAQIW 136
++ D+ G +
Sbjct: 113 AYYVFDKTGQLRHFQ 127
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 35.3 bits (80), Expect = 0.007
Identities = 15/142 (10%), Positives = 40/142 (28%), Gaps = 8/142 (5%)
Query: 10 APHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIG 69
+ + D + S+ ++ F+ + + + ++
Sbjct: 18 HTMSTMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITV 77
Query: 70 ISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKY-MGVVRTTFLIDE 128
SP + K + K V + + V + LI +
Sbjct: 78 ASPGFLHEKKDGEFQKW-------YAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGK 130
Query: 129 KGIIAQIWKPVTLKNHAQSVLK 150
G + +I K + A ++++
Sbjct: 131 DGDVQRIVKGSINEAQALALIR 152
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein structure initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 34.8 bits (78), Expect = 0.009
Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 11/152 (7%)
Query: 6 VGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEEST 65
+ AP F L + + + + L L G ++V+ + C E + L A +
Sbjct: 4 EENPAPDFTLNTLNGEVVKLSDLKG-QVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPF 62
Query: 66 ILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFL 125
++ +S D T + +K + V TF+
Sbjct: 63 RMLCVSIDEGGKVAVEEFFRKTGFT----------LPVLLDADKRVGKLYGTTGVPETFV 112
Query: 126 IDEKGIIAQIWKPVTLKNHAQSVLKMVKSLKQ 157
ID G+I + +H + + + L +
Sbjct: 113 IDRHGVILKKVVGAMEWDHPEVIAFLNNELSK 144
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 34.1 bits (78), Expect = 0.013
Identities = 34/168 (20%), Positives = 51/168 (30%), Gaps = 63/168 (37%)
Query: 15 LPSNDEQEISL------LALGGSKIVLYFY------PKDDTSGCTAEAINFSSLKADFDE 62
LP+ + EISL L + G LY K + G I FS K F
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS-GLDQSRIPFSERKLKF-- 416
Query: 63 ESTILIGIS-PDSIASHKKFHQKHNLSITLLADESKEVLKSYDV-WKEKSMFGKKYMGV- 119
S + ++ P FH L +D + L +V + K + +
Sbjct: 417 -SNRFLPVASP--------FHSHL-LVPA--SDLINKDLVKNNVSFNAKD------IQIP 458
Query: 120 VRTTF-----------LIDEKGIIAQI------WK-----PVTLKNHA 145
V TF + + I+ I W+ T H
Sbjct: 459 VYDTFDGSDLRVLSGSISER--IVDCIIRLPVKWETTTQFKAT---HI 501
Score = 33.4 bits (76), Expect = 0.022
Identities = 32/178 (17%), Positives = 51/178 (28%), Gaps = 72/178 (40%)
Query: 1 MTSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADF 60
M + S P L S+ E LL V P TA S L+ F
Sbjct: 1 MDAYST---RP-LTL-SHGSLEHVLL-------V----P-------TASFFIASQLQEQF 37
Query: 61 -------------DEESTILIGISPDSIASHKKFHQKHNLSITLLADE--------SKEV 99
D+E T +P + KF + ++ +V
Sbjct: 38 NKILPEPTEGFAADDEPT-----TPAELVG--KF-------LGYVSSLVEPSKVGQFDQV 83
Query: 100 LKSYDVWKEKSMFGKKYMG-----VVRTTFLIDEKGIIAQIWKPVTLKN--HAQSVLK 150
L E F Y+ + L + + + K + +KN A+ + K
Sbjct: 84 LNL--CLTE---FENCYLEGNDIHALAAKLLQENDTTLVKT-KEL-IKNYITARIMAK 134
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase;
GSHPX-4,phospholipid hydroperoxide, structural genomics;
1.90A {Homo sapiens}
Length = 185
Score = 34.2 bits (77), Expect = 0.013
Identities = 19/152 (12%), Positives = 39/152 (25%), Gaps = 15/152 (9%)
Query: 3 SLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62
S+ F D ++L G ++ L A + E
Sbjct: 22 SMRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGK-TEVNYTQLVDLHARYAE 80
Query: 63 ESTILIGISPDSIASHKK----------FHQKHNLSITLLADESKEVLKSYDVWKEKSMF 112
++ + + + + + W +
Sbjct: 81 CGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPK 140
Query: 113 GKKYMGV----VRTTFLIDEKGIIAQIWKPVT 140
GK +G T FLID+ G + + + P+
Sbjct: 141 GKGILGNAIKWNFTKFLIDKNGCVVKRYGPME 172
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein,
structural genomics, riken structural
genomics/proteomics initiative; 1.80A {Thermus
thermophilus HB8} SCOP: c.47.1.10 PDB: 2ywo_A
Length = 188
Score = 34.2 bits (77), Expect = 0.014
Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 6/132 (4%)
Query: 3 SLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYF------YPKDDTSGCTAEAINFSSL 56
L + LP L + + F Y K A A +
Sbjct: 6 ELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK 65
Query: 57 KADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKY 116
A + D+ F ++H + L DE++EV K+Y + +F
Sbjct: 66 VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDE 125
Query: 117 MGVVRTTFLIDE 128
++R +++
Sbjct: 126 RRLLRYHGRVND 137
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold,
peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium
falciparum} SCOP: c.47.1.10
Length = 182
Score = 33.9 bits (77), Expect = 0.017
Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 18 NDEQEISLLAL-GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEES---TILIGISPD 73
ND I L KI+L P T C+ + I + D+ + + I+ +
Sbjct: 30 NDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNN 89
Query: 74 SIASHKKFHQKHNLSITL-LADESKEVLKSYDVWKEKSMFGKKYMGVV--RTTFLIDEKG 130
I K + + ++ ++D + S ++ +KS F MG+ R +++
Sbjct: 90 DIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVDKSNFF---MGMRPWRFVAIVEN-N 145
Query: 131 IIAQIW 136
I+ +++
Sbjct: 146 ILVKMF 151
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 32.8 bits (74), Expect = 0.037
Identities = 13/135 (9%), Positives = 36/135 (26%), Gaps = 16/135 (11%)
Query: 1 MTSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSL-KAD 59
M+ L P + E+ + +L G + YF
Sbjct: 1 MSGL--DKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKF 57
Query: 60 FDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKY-MG 118
+ ++ ++ + D + + + + + K + +
Sbjct: 58 HESKNFEVVFCTWDEEEDGFAGYFAKMPWLAV----------PFAQSEAVQKLSKHFNVE 107
Query: 119 VVRTTFLID-EKGII 132
+ T +D + G +
Sbjct: 108 SIPTLIGVDADSGDV 122
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal
thioredoxin-like domain, N-terminal beta-sheet,
fingerprint rigion, oxidoreductase; 1.90A {Escherichia
coli} PDB: 2g0f_A 1z5y_E 2b1l_A
Length = 168
Score = 30.3 bits (67), Expect = 0.19
Identities = 28/158 (17%), Positives = 41/158 (25%), Gaps = 17/158 (10%)
Query: 3 SLSVGDKAPHFVLPS--NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADF 60
S +G P F L S N Q L K VL C AE + L A
Sbjct: 21 SALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQG 80
Query: 61 DEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVV 120
+ S K E + + +
Sbjct: 81 IRVVGMNYKDDRQKAISWLK--------------ELGNPYALSLFDGDGMLGLDLGVYGA 126
Query: 121 RTTFLIDEKGIIAQIWK-PVTLKNHAQSVLKMVKSLKQ 157
TFLID GII + + + + + + +
Sbjct: 127 PETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYSK 164
>3cyn_A Probable glutathione peroxidase 8; thioredoxin fold, membrane,
oxidoreductase, transmembrane, structural genomics,
structural genomics consortium; 2.00A {Homo sapiens}
Length = 189
Score = 30.0 bits (66), Expect = 0.22
Identities = 13/136 (9%), Positives = 35/136 (25%), Gaps = 8/136 (5%)
Query: 13 FVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISP 72
F + + +SL G ++ D K ++L
Sbjct: 30 FEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCN 89
Query: 73 DSI--------ASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTF 124
+ + ++ + + ++ KK +
Sbjct: 90 QFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKY 149
Query: 125 LIDEKGIIAQIWKPVT 140
L++ +G + + W+P
Sbjct: 150 LVNPEGQVVKFWRPEE 165
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, cytoplasm,
oxidoreductase, peroxidase, redox-active center; 2.02A
{Saccharomyces cerevisiae}
Length = 171
Score = 30.0 bits (66), Expect = 0.25
Identities = 20/157 (12%), Positives = 42/157 (26%), Gaps = 16/157 (10%)
Query: 13 FVLPSNDEQEISLLALGGSKIVLYFYP-KDDTSGCTAEAINFSSLKADFDEESTILIGIS 71
Q L G +++ K + E D
Sbjct: 15 LAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTPQYKELEALYKRYKDEGFTIIGFPCNQ 74
Query: 72 P------DSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKS-----MFGKKYMGVV 120
+ + ++ ++ V+K M G + +
Sbjct: 75 FGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWN 134
Query: 121 RTTFLIDEKGIIAQIWKPVT----LKNHAQSVLKMVK 153
FL+D+KG + + + +T L + +LK V+
Sbjct: 135 FEKFLVDKKGKVYERYSSLTKPSSLSETIEELLKEVE 171
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione,
oxidoreductase, dithiol-dependant peroxidase; 2.1A
{Trypanosoma brucei}
Length = 190
Score = 29.6 bits (65), Expect = 0.36
Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 13/141 (9%)
Query: 13 FVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISP 72
F + D + +L+ GS +++Y + + T+L
Sbjct: 31 FEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCN 90
Query: 73 DSIASHKKFHQK-------------HNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGV 119
++ ++ + E+ L Y + + K +
Sbjct: 91 QFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKW 150
Query: 120 VRTTFLIDEKGIIAQIWKPVT 140
T+FLID G+ + + P
Sbjct: 151 NFTSFLIDRDGVPVERFSPGA 171
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.67
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 79 KKFHQKHNLSITLLADESKEVL 100
KK Q S+ L AD+S L
Sbjct: 23 KKL-QA---SLKLYADDSAPAL 40
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A
{Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Length = 170
Score = 28.2 bits (61), Expect = 0.79
Identities = 16/143 (11%), Positives = 40/143 (27%), Gaps = 12/143 (8%)
Query: 10 APHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIG 69
F + E ++ L G +++ + A + D+ IL
Sbjct: 12 VHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAF 71
Query: 70 ISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVR-------- 121
+ + + + DV E + +++ + +
Sbjct: 72 PCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDI 131
Query: 122 ----TTFLIDEKGIIAQIWKPVT 140
FL+++ G + + P T
Sbjct: 132 QWNFAKFLVNKDGQVVDRYYPTT 154
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX,
phospholipid hydroperoxidase, structural genomics,
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 181
Score = 28.4 bits (62), Expect = 0.80
Identities = 12/136 (8%), Positives = 24/136 (17%), Gaps = 8/136 (5%)
Query: 13 FVLPSNDEQEISLLALGGSKIVLYFYPKDDTS--GCTAEAINFSSLKADFDEESTILIGI 70
F + + +SL GS ++ +
Sbjct: 32 FKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCN 91
Query: 71 SPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMF--GKKYMGVVR----TTF 124
+ T + F + G +
Sbjct: 92 QFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKY 151
Query: 125 LIDEKGIIAQIWKPVT 140
L+ G + W P
Sbjct: 152 LVAPDGKVVGAWDPTV 167
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA)
sandwich, glutaredoxin fold, oxidoreductase; 1.41A
{Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Length = 187
Score = 28.0 bits (61), Expect = 0.95
Identities = 21/151 (13%), Positives = 45/151 (29%), Gaps = 13/151 (8%)
Query: 3 SLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62
+S F + D + +L+ GS +++Y + +
Sbjct: 19 KMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ 78
Query: 63 ESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVR- 121
T+L S ++ + ++ +V E + +YM +
Sbjct: 79 GFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKP 138
Query: 122 ------------TTFLIDEKGIIAQIWKPVT 140
T+FLID G+ + + P
Sbjct: 139 GILATKAIKWNFTSFLIDRDGVPVERFSPGA 169
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase,
lipid peroxidase, schistosoma detoxification pathway;
1.00A {Schistosoma mansoni} PDB: 2wgr_A
Length = 169
Score = 27.4 bits (59), Expect = 1.4
Identities = 15/140 (10%), Positives = 35/140 (25%), Gaps = 12/140 (8%)
Query: 13 FVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISP 72
F + + ++SL G ++ + + IL
Sbjct: 14 FTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCN 73
Query: 73 DSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKY------------MGVV 120
+ +T ++ V + K+ +
Sbjct: 74 QFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWN 133
Query: 121 RTTFLIDEKGIIAQIWKPVT 140
+ FL+D +G + + P T
Sbjct: 134 FSKFLVDRQGQPVKRYSPTT 153
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.315 0.131 0.370
Gapped
Lambda K H
0.267 0.0555 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,241,430
Number of extensions: 51722
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 88
Length of query: 157
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 72
Effective length of database: 3,632,490
Effective search space: 261539280
Effective search space used: 261539280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)