Query gi|254780213|ref|YP_003064626.1| hypothetical protein CLIBASIA_00490 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 63
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Mon May 23 15:44:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780213.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2qg3_A UPF0130 protein AF_205 27.1 48 0.0014 16.1 2.5 43 4-54 138-181 (208)
2 >2it2_A UPF0130 protein PH1069 22.2 52 0.0015 15.9 2.0 43 7-49 19-72 (97)
3 >2kdn_A Putative uncharacteriz 12.6 1.1E+02 0.0034 14.1 1.8 20 13-32 75-94 (108)
4 >1jmx_B Amine dehydrogenase; o 10.3 48 0.0014 16.1 -0.8 36 2-37 17-52 (84)
5 >1r8u_A CBP/P300-interacting t 10.2 1.5E+02 0.0044 13.5 1.8 18 38-55 3-21 (50)
6 >1yx3_A Hypothetical protein D 8.9 1.2E+02 0.0036 14.0 0.8 20 2-21 38-57 (61)
7 >1v9j_A BOLA-like protein rike 8.6 1.5E+02 0.0043 13.5 1.2 19 13-31 82-100 (113)
8 >1pby_B Quinohemoprotein amine 8.5 63 0.0019 15.5 -0.7 37 2-38 107-143 (187)
9 >2dvk_A UPF0130 protein APE081 8.2 1.8E+02 0.0054 13.0 2.9 27 28-54 139-166 (188)
10 >2wzp_P Lactococcal phage P2 O 8.0 1.5E+02 0.0043 13.5 1.0 14 4-23 48-61 (162)
No 1
>>2qg3_A UPF0130 protein AF_2059; 2648472, uncharacterized protein AF2059, TYW3 like, structural genomics; HET: MSE; 1.95A {Archaeoglobus fulgidus dsm 4304} (A:)
Probab=27.12 E-value=48 Score=16.11 Aligned_cols=43 Identities=26% Similarity=0.499 Sum_probs=29.4
Q ss_pred CCCCCCEEEEHHHHHHHHCCCCEEEEEECC-CCCCEECHHHHHHHHHHHHHH
Q ss_conf 101000000178887742025217775405-777301599999999996232
Q gi|254780213|r 4 ITSLSKWDIEVNSILKEEIDDISVVSLPLS-DDNMTIDEEYLEKLVVESLDR 54 (63)
Q Consensus 4 itslskwdievnsilkeeiddisvvslpls-ddnmtideeyleklvvesldr 54 (63)
|+|.++|-+++.+-++ ...|+. ++.+-+++|||+.||-.+-++
T Consensus 138 I~s~kr~iVaIrs~~~--------le~Pl~~~g~~lV~~eyl~~Lv~~aN~k 181 (208)
T 2qg3_A 138 VISLSNYVVEIASLER--------IELPVAEKGLXLVDDAYLSYVVRWANEK 181 (208)
T ss_dssp EEETTTTEEEECCCCC--------EEEEEEETTEESSCHHHHHHHHHHHHHH
T ss_pred EEECCCEEEEEEECCC--------EEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 0306826999950573--------4356603994716999999999999999
No 2
>>2it2_A UPF0130 protein PH1069; hypothetical protein, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2drv_A 2it3_A (A:57-103,A:151-200)
Probab=22.19 E-value=52 Score=15.91 Aligned_cols=43 Identities=30% Similarity=0.555 Sum_probs=28.0
Q ss_pred CCCEEE-----EHHHHHHHHCCC-CEEE----EEECCCC-CCEECHHHHHHHHH
Q ss_conf 000000-----178887742025-2177----7540577-73015999999999
Q gi|254780213|r 7 LSKWDI-----EVNSILKEEIDD-ISVV----SLPLSDD-NMTIDEEYLEKLVV 49 (63)
Q Consensus 7 lskwdi-----evnsilkeeidd-isvv----slplsdd-nmtideeyleklvv 49 (63)
|.||.- |+..-++..-++ |+.| ..||++| .+-.++||++.+|-
T Consensus 19 lgkwh~y~~~~e~~~a~~~~~~~~~~fv~ERLEVPLg~dGkiLVseEYL~fLV~ 72 (97)
T 2it2_A 19 LGKWHREVSLYEVLEAIKKHRSGQLWFLVERXDVLLGENGEIFVGEEYLNKIVE 72 (97)
T ss_dssp EEEESSCCCHHHHHHHHTTCCSSEEEEEECCEEEEEEETTEECCCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 234178799999999873467762799718511266219937269999999999
No 3
>>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} (A:)
Probab=12.65 E-value=1.1e+02 Score=14.10 Aligned_cols=20 Identities=45% Similarity=0.619 Sum_probs=15.1
Q ss_pred EHHHHHHHHCCCCEEEEEEC
Q ss_conf 17888774202521777540
Q gi|254780213|r 13 EVNSILKEEIDDISVVSLPL 32 (63)
Q Consensus 13 evnsilkeeiddisvvslpl 32 (63)
-||..|++++.+|--+++-.
T Consensus 75 ~V~~~L~e~i~~iHAlsi~t 94 (108)
T 2kdn_A 75 LVNTILKEELQNIHAFSMKC 94 (108)
T ss_dssp HHHHHHHHHGGGCSCEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999971241048780
No 4
>>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} (B:256-339)
Probab=10.30 E-value=48 Score=16.11 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=23.9
Q ss_pred CCCCCCCCEEEEHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 401010000001788877420252177754057773
Q gi|254780213|r 2 GFITSLSKWDIEVNSILKEEIDDISVVSLPLSDDNM 37 (63)
Q Consensus 2 gfitslskwdievnsilkeeiddisvvslplsddnm 37 (63)
|..+.|+|.|||-...+|.-.-+-+--++-.|.|.-
T Consensus 17 gv~n~L~k~Die~~kllk~v~L~HTYY~v~~s~dG~ 52 (84)
T 1jmx_B 17 GVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGD 52 (84)
T ss_dssp EEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSS
T ss_pred ECCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCC
T ss_conf 318989999999995999974899888999967999
No 5
>>1r8u_A CBP/P300-interacting transactivator 2; zinc-binding motifs, protein-protein complex, TAZ zinc finger, transcription/transcription activator complex; NMR {Homo sapiens} (A:)
Probab=10.21 E-value=1.5e+02 Score=13.49 Aligned_cols=18 Identities=61% Similarity=0.756 Sum_probs=14.7
Q ss_pred EECHHHHHHHHHH-HHHHH
Q ss_conf 0159999999999-62322
Q gi|254780213|r 38 TIDEEYLEKLVVE-SLDRS 55 (63)
Q Consensus 38 tideeyleklvve-sldrs 55 (63)
-||||-|..|++| .|||-
T Consensus 3 liDEevL~sLv~ElgldR~ 21 (50)
T 1r8u_A 3 FIDEEVLMSLVIEMGLDRI 21 (50)
T ss_dssp SCCHHHHHHHHHHHTGGGC
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 1009999999999823888
No 6
>>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum} (A:1-61)
Probab=8.91 E-value=1.2e+02 Score=13.99 Aligned_cols=20 Identities=20% Similarity=0.704 Sum_probs=16.2
Q ss_pred CCCCCCCCEEEEHHHHHHHH
Q ss_conf 40101000000178887742
Q gi|254780213|r 2 GFITSLSKWDIEVNSILKEE 21 (63)
Q Consensus 2 gfitslskwdievnsilkee 21 (63)
||+..++.|.-++-..+.++
T Consensus 38 GYL~n~~dWseevA~~lA~~ 57 (61)
T 1yx3_A 38 GYLSNLNDWVPGVADVMAKQ 57 (61)
T ss_dssp TEECCTTCCCHHHHHHHHHT
T ss_pred CCCCCHHHCCHHHHHHHHHH
T ss_conf 66579112989999999998
No 7
>>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} (A:)
Probab=8.63 E-value=1.5e+02 Score=13.55 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=11.3
Q ss_pred EHHHHHHHHCCCCEEEEEE
Q ss_conf 1788877420252177754
Q gi|254780213|r 13 EVNSILKEEIDDISVVSLP 31 (63)
Q Consensus 13 evnsilkeeiddisvvslp 31 (63)
-||..|+++|.+|--+++-
T Consensus 82 ~Vy~~L~~~i~~iHAlsik 100 (113)
T 1v9j_A 82 LVNECLAEELPHIHAFEQK 100 (113)
T ss_dssp HHHHHTTTTGGGCSSEEEE
T ss_pred HHHHHHHHHHHCCEEEEEE
T ss_conf 2899999997314204878
No 8
>>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} (B:1-33,B:184-337)
Probab=8.52 E-value=63 Score=15.49 Aligned_cols=37 Identities=30% Similarity=0.288 Sum_probs=24.9
Q ss_pred CCCCCCCCEEEEHHHHHHHHCCCCEEEEEECCCCCCE
Q ss_conf 4010100000017888774202521777540577730
Q gi|254780213|r 2 GFITSLSKWDIEVNSILKEEIDDISVVSLPLSDDNMT 38 (63)
Q Consensus 2 gfitslskwdievnsilkeeiddisvvslplsddnmt 38 (63)
|..+.|+|.|||-...||.-.-+-+--++-.|.|+-.
T Consensus 107 Gv~N~Lsk~Die~~kllK~v~L~HTYY~Vnvs~DGsk 143 (187)
T 1pby_B 107 GAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGST 143 (187)
T ss_dssp EEESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCE
T ss_pred ECCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCE
T ss_conf 7576489998988949999738998889999789999
No 9
>>2dvk_A UPF0130 protein APE0816; hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix} (A:)
Probab=8.21 E-value=1.8e+02 Score=13.04 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=19.6
Q ss_pred EEEECC-CCCCEECHHHHHHHHHHHHHH
Q ss_conf 775405-777301599999999996232
Q gi|254780213|r 28 VSLPLS-DDNMTIDEEYLEKLVVESLDR 54 (63)
Q Consensus 28 vslpls-ddnmtideeyleklvvesldr 54 (63)
...|+. ++.+.+++|||+.||-.+-++
T Consensus 139 le~Pl~~~g~~lV~~eyl~~Lv~~aN~k 166 (188)
T 2dvk_A 139 MSVPLVMEGARIVGDDALDMLIEKANTI 166 (188)
T ss_dssp EEEEEEETTEECCCHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 6667741992746999999999999999
No 10
>>2wzp_P Lactococcal phage P2 ORF15; baseplate, viral protein; 2.60A {Lactococcus phage P2} PDB: 2x53_S (P:165-326)
Probab=8.01 E-value=1.5e+02 Score=13.55 Aligned_cols=14 Identities=71% Similarity=1.082 Sum_probs=10.3
Q ss_pred CCCCCCEEEEHHHHHHHHCC
Q ss_conf 10100000017888774202
Q gi|254780213|r 4 ITSLSKWDIEVNSILKEEID 23 (63)
Q Consensus 4 itslskwdievnsilkeeid 23 (63)
|..||.||| |+||-
T Consensus 48 i~rlsrwdi------k~eif 61 (162)
T 2wzp_P 48 IDRLSRWDI------KEEIF 61 (162)
T ss_dssp GGGGGCEEE------CSCEE
T ss_pred HHHHHHCCH------HHHHH
T ss_conf 666631114------89999
Done!