Query gi|254780213|ref|YP_003064626.1| hypothetical protein CLIBASIA_00490 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 63 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Mon May 23 15:21:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780213.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2vxo_A GMP synthase [glutamine 25.9 41 0.0017 15.6 3.1 46 6-51 591-673 (697) 2 2qg3_A UPF0130 protein AF_2059 21.7 49 0.0021 15.2 2.5 43 4-54 138-181 (208) 3 1ji8_A Dissimilatory siroheme- 19.9 32 0.0013 16.2 1.3 24 2-25 22-45 (111) 4 1r8u_A CBP/P300-interacting tr 17.8 58 0.0024 14.9 2.2 18 38-55 3-21 (50) 5 2xa6_A KH domain-containing\,R 12.8 72 0.003 14.4 1.6 21 36-56 2-24 (41) 6 3o2e_A BOLA-like protein; ssgc 11.2 94 0.004 13.7 1.8 20 13-32 74-93 (105) 7 1sau_A Sulfite reductase, desu 9.1 1E+02 0.0042 13.6 1.3 22 1-22 16-37 (115) 8 1ehx_A CIPC, scaffoldin protei 6.9 1.1E+02 0.0048 13.3 0.8 20 30-49 43-62 (94) 9 1h2k_S Hypoxia-inducible facto 6.4 74 0.0031 14.3 -0.4 15 5-19 8-22 (41) 10 1p4q_A CBP/P300-interacting tr 5.8 1.6E+02 0.0068 12.5 1.0 21 35-55 12-33 (52) No 1 >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Probab=25.89 E-value=41 Score=15.64 Aligned_cols=46 Identities=39% Similarity=0.564 Sum_probs=33.1 Q ss_pred CCCCEEEEHHHHHHH-----HCCCCEEEEEEC-----------------------CCCCCE---------ECHHHHHHHH Q ss_conf 100000017888774-----202521777540-----------------------577730---------1599999999 Q gi|254780213|r 6 SLSKWDIEVNSILKE-----EIDDISVVSLPL-----------------------SDDNMT---------IDEEYLEKLV 48 (63) Q Consensus 6 slskwdievnsilke-----eiddisvvslpl-----------------------sddnmt---------ideeyleklv 48 (63) .|-..|.-+|++|.+ .|....||.+|+ +.|-|| |.++-|++.+ T Consensus 591 ~lr~ad~~~~~~l~~~~~~~~i~Q~pvvl~p~~f~~~~~~~~~~~~~svviR~~~T~DfMT~~~a~p~~~ip~~~l~~i~ 670 (697) T 2vxo_A 591 TLRQADFEAHNILRESGYAGKISQMPVILTPLHFDRDPLQKQPSCQRSVVIRTFITSDFMTGIPATPGNEIPVEVVLKMV 670 (697) T ss_dssp HHHHHHHHHHHHHHHTTCGGGCSBCCEEEESCCCCCCGGGTCCCCCEEEEECCBBCSSSSSBBCCCBTTTBCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 88887899999988613000210173786125457423331777751599942613302037755675548999999999 Q ss_pred HHH Q ss_conf 996 Q gi|254780213|r 49 VES 51 (63) Q Consensus 49 ves 51 (63) -|- T Consensus 671 ~~i 673 (697) T 2vxo_A 671 TEI 673 (697) T ss_dssp HHH T ss_pred HHH T ss_conf 998 No 2 >2qg3_A UPF0130 protein AF_2059; TYW3 methyltransferase-like prrotein, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.95A {Archaeoglobus fulgidus dsm 4304} Probab=21.72 E-value=49 Score=15.23 Aligned_cols=43 Identities=28% Similarity=0.516 Sum_probs=28.1 Q ss_pred CCCCCCEEEEHHHHHHHHCCCCEEEEEECCCC-CCEECHHHHHHHHHHHHHH Q ss_conf 10100000017888774202521777540577-7301599999999996232 Q gi|254780213|r 4 ITSLSKWDIEVNSILKEEIDDISVVSLPLSDD-NMTIDEEYLEKLVVESLDR 54 (63) Q Consensus 4 itslskwdievnsilkeeiddisvvslplsdd-nmtideeyleklvvesldr 54 (63) |+|.++|-+++.+-+ -...|+.++ .+-+++|||+.||-.+-++ T Consensus 138 I~s~~~~iVaIrs~~--------~le~Pl~~~g~~lV~~eyL~~Lv~~aNek 181 (208) T 2qg3_A 138 VISLSNYVVEIASLE--------RIELPVAEKGLMLVDDAYLSYVVRWANEK 181 (208) T ss_dssp EEETTTTEEEECCCC--------CEEEEEEETTEESSCHHHHHHHHHHHHHH T ss_pred CCCCCCEEEEEEECC--------CEEEEEECCCCCCCCHHHHHHHHHHHHHH T ss_conf 111783599995158--------45346731993706999999999999999 No 3 >1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1 Probab=19.90 E-value=32 Score=16.25 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=19.6 Q ss_pred CCCCCCCCEEEEHHHHHHHHCCCC Q ss_conf 401010000001788877420252 Q gi|254780213|r 2 GFITSLSKWDIEVNSILKEEIDDI 25 (63) Q Consensus 2 gfitslskwdievnsilkeeiddi 25 (63) ||...++.|+-++-..+-.+.+.| T Consensus 22 GfL~~~~dW~e~vA~~lA~~~egi 45 (111) T 1ji8_A 22 CFMQNPEDWDEKVAEWLARELEGI 45 (111) T ss_dssp GEECCGGGCCHHHHHHHHHHHTCC T ss_pred CCCCCHHHCCHHHHHHHHHCCCCC T ss_conf 773993446999999999730483 No 4 >1r8u_A CBP/P300-interacting transactivator 2; zinc-binding motifs, protein-protein complex, TAZ zinc finger, transcription/transcription activator complex; NMR {Homo sapiens} SCOP: j.96.1.1 Probab=17.84 E-value=58 Score=14.85 Aligned_cols=18 Identities=61% Similarity=0.756 Sum_probs=14.6 Q ss_pred EECHHHHHHHHHH-HHHHH Q ss_conf 0159999999999-62322 Q gi|254780213|r 38 TIDEEYLEKLVVE-SLDRS 55 (63) Q Consensus 38 tideeyleklvve-sldrs 55 (63) -||||-|..|+.| .|||- T Consensus 3 ~iDEevL~sL~~ElgLdR~ 21 (50) T 1r8u_A 3 FIDEEVLMSLVIEMGLDRI 21 (50) T ss_dssp SCCHHHHHHHHHHHTGGGC T ss_pred CCCHHHHHHHHHHHHHHHH T ss_conf 2009999999999823888 No 5 >2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens} Probab=12.82 E-value=72 Score=14.36 Aligned_cols=21 Identities=43% Similarity=0.669 Sum_probs=15.9 Q ss_pred CCEECHHHHHHHHHH--HHHHHC Q ss_conf 730159999999999--623220 Q gi|254780213|r 36 NMTIDEEYLEKLVVE--SLDRSL 56 (63) Q Consensus 36 nmtideeyleklvve--sldrsl 56 (63) .|.-++.||..|..| |||.|. T Consensus 2 ~me~e~kyLpeLmAEkdsLDpSF 24 (41) T 2xa6_A 2 AMEPENKYLPELMAEKDSLDPSF 24 (41) T ss_dssp ---CHHHHHHHHHHHHHHSCTTC T ss_pred CCCCCHHHHHHHHHHHCCCCHHH T ss_conf 87720205799986331467799 No 6 >3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis} Probab=11.20 E-value=94 Score=13.74 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=14.4 Q ss_pred EHHHHHHHHCCCCEEEEEEC Q ss_conf 17888774202521777540 Q gi|254780213|r 13 EVNSILKEEIDDISVVSLPL 32 (63) Q Consensus 13 evnsilkeeiddisvvslpl 32 (63) -||.+|+++|.+|--+++-. T Consensus 74 ~V~~~L~eei~~IHAlsikt 93 (105) T 3o2e_A 74 LVNSAIAAEMPQIHAFTMKC 93 (105) T ss_dssp HHHHHTTTTGGGEEEEEEEE T ss_pred HHHHHHHHHHHHCCCEEEEE T ss_conf 99999999985031327770 No 7 >1sau_A Sulfite reductase, desulfoviridin-type subunit gamma; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus dsm 4304} PDB: 2a5w_A Probab=9.06 E-value=1e+02 Score=13.61 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=18.6 Q ss_pred CCCCCCCCCEEEEHHHHHHHHC Q ss_conf 9401010000001788877420 Q gi|254780213|r 1 MGFITSLSKWDIEVNSILKEEI 22 (63) Q Consensus 1 mgfitslskwdievnsilkeei 22 (63) -||...++.|+-+|-..+.++. T Consensus 16 ~GfL~~~~dW~e~vA~~lA~~~ 37 (115) T 1sau_A 16 DGFLQDWEEWDEEVAEALAKDT 37 (115) T ss_dssp TSCBSSGGGCCHHHHHHHHTCT T ss_pred CCCCCCHHHCCHHHHHHHHHHC T ss_conf 8754994657999999999843 No 8 >1ehx_A CIPC, scaffoldin protein; beta-BETA-barrels, 3.10 helix, unknown function; NMR {Clostridium cellulolyticum} SCOP: b.1.18.13 Probab=6.94 E-value=1.1e+02 Score=13.29 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=15.8 Q ss_pred EECCCCCCEECHHHHHHHHH Q ss_conf 54057773015999999999 Q gi|254780213|r 30 LPLSDDNMTIDEEYLEKLVV 49 (63) Q Consensus 30 lplsddnmtideeyleklvv 49 (63) .-++++..||-.+||+++-. T Consensus 43 Ytv~g~~vTik~sYL~~l~~ 62 (94) T 1ehx_A 43 YTKGTNEVTLLASYLNTLPE 62 (94) T ss_dssp EEEETTEEEECHHHHHHSCS T ss_pred EEEECCEEEEEHHHHHCCCC T ss_conf 79858899998899600768 No 9 >1h2k_S Hypoxia-inducible factor 1 alpha; transcription activator/inhibitor, FIH, HIF, DSBH, oxygenase, transcription, 2- oxoglutarate; HET: OGA; 2.15A {Homo sapiens} SCOP: j.96.1.1 PDB: 1h2l_S* 2ilm_S* 1l3e_A Probab=6.39 E-value=74 Score=14.29 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=10.7 Q ss_pred CCCCCEEEEHHHHHH Q ss_conf 010000001788877 Q gi|254780213|r 5 TSLSKWDIEVNSILK 19 (63) Q Consensus 5 tslskwdievnsilk 19 (63) ..|+.||-|||.-+. T Consensus 8 P~lT~yDcEVNaP~~ 22 (41) T 1h2k_S 8 PQLTSYDCEVNAPIQ 22 (41) T ss_dssp --CCCCCCCCSSCC- T ss_pred CCCCCCCCEECCCCC T ss_conf 200155405436436 No 10 >1p4q_A CBP/P300-interacting transactivator 2; helix, protein-protein complex, transcription/transferase complex; NMR {Homo sapiens} SCOP: j.96.1.1 Probab=5.82 E-value=1.6e+02 Score=12.50 Aligned_cols=21 Identities=57% Similarity=0.683 Sum_probs=16.1 Q ss_pred CCCEECHHHHHHHHHH-HHHHH Q ss_conf 7730159999999999-62322 Q gi|254780213|r 35 DNMTIDEEYLEKLVVE-SLDRS 55 (63) Q Consensus 35 dnmtideeyleklvve-sldrs 55 (63) |.--||||-|-.||+| .|||. T Consensus 12 D~d~iDEevL~sLv~ELgLdR~ 33 (52) T 1p4q_A 12 DTDFIDEEVLMSLVIEMGLDRI 33 (52) T ss_dssp SCSSSCTTHHHHHHHHHTSSSC T ss_pred CCCCCCHHHHHHHHHHHHHHHH T ss_conf 4220169999999999823888 Done!