RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780213|ref|YP_003064626.1| hypothetical protein
CLIBASIA_00490 [Candidatus Liberibacter asiaticus str. psy62]
         (63 letters)



>gnl|CDD|161779 TIGR00232, tktlase_bact, transketolase, bacterial and yeast.  This
           model is designed to capture orthologs of bacterial
           transketolases. The group includes two from the yeast
           Saccharomyces cerevisiae but excludes dihydroxyactetone
           synthases (formaldehyde transketolases) from various
           yeasts and the even more distant mammalian
           transketolases. Among the family of thiamine
           diphosphate-dependent enzymes that includes
           transketolases, dihydroxyacetone synthases, pyruvate
           dehydrogenase E1-beta subunits, and
           deoxyxylulose-5-phosphate synthases, mammalian and
           bacterial transketolases seem not to be orthologous.
          Length = 653

 Score = 26.2 bits (58), Expect = 2.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 12  IEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKL 47
           +E    L  E   + VVS+P  D     DEEY E +
Sbjct: 556 VEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESV 591


>gnl|CDD|178099 PLN02481, PLN02481, Omega-hydroxypalmitate O-feruloyl transferase.
          Length = 436

 Score = 25.4 bits (56), Expect = 3.4
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 5/33 (15%)

Query: 20  EEIDDISVVSLPLSDDNMT-----IDEEYLEKL 47
            EI+D+S  S    D+ +       D E LEKL
Sbjct: 217 AEIEDVSGTSKLYDDEELVYKSFCFDPEKLEKL 249


>gnl|CDD|153055 pfam12621, DUF3779, Phosphate metabolism protein.  This domain
          family is found in eukaryotes, and is approximately 100
          amino acids in length. The family is found in
          association with pfam02714. There are two completely
          conserved residues (W and D) that may be functionally
          important. This family is likely to be involved in
          phosphate metabolism however there is little
          accompanying literature to confirm this.
          Length = 95

 Score = 25.3 bits (56), Expect = 4.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 19 KEEIDDISVVSLPLSDDNMTIDEE 42
          ++EI+  S V +P+SD+  T DE+
Sbjct: 59 RQEIEHTSDVGVPISDEGATFDEK 82


>gnl|CDD|178792 PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.
          Length = 416

 Score = 24.7 bits (55), Expect = 5.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 27  VVSLPLSDDNMTIDEEYLEKLVVE 50
           VVS  + ++   ID + +EKL +E
Sbjct: 140 VVSYGVDEETGLIDYDEVEKLALE 163


>gnl|CDD|181692 PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.
          Length = 350

 Score = 24.8 bits (55), Expect = 5.5
 Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 3/23 (13%)

Query: 24  DISVVSLPLSDDNMTIDEEYLEK 46
           D+S   L   ++N+ I  +YLE+
Sbjct: 135 DLSEEPL---EENIEICSKYLER 154


>gnl|CDD|178730 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
          Length = 1320

 Score = 23.7 bits (51), Expect = 9.6
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 4/26 (15%)

Query: 29  SLPLSDDN----MTIDEEYLEKLVVE 50
           SLP  D++    M IDEE +E+L V+
Sbjct: 502 SLPHVDEDGDEEMEIDEEAVERLCVQ 527


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.313    0.133    0.362 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,008,536
Number of extensions: 48469
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 17
Length of query: 63
Length of database: 5,994,473
Length adjustment: 35
Effective length of query: 28
Effective length of database: 5,238,193
Effective search space: 146669404
Effective search space used: 146669404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.1 bits)