RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780213|ref|YP_003064626.1| hypothetical protein
CLIBASIA_00490 [Candidatus Liberibacter asiaticus str. psy62]
         (63 letters)



>2qg3_A UPF0130 protein AF_2059; 2648472, uncharacterized protein AF2059,
           TYW3 like, structural genomics; HET: MSE; 1.95A
           {Archaeoglobus fulgidus dsm 4304}
          Length = 208

 Score = 28.2 bits (63), Expect = 0.49
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 10/60 (16%)

Query: 4   ITSLSKWDIEVNSILKEEIDDISVVSLPLSDDN-MTIDEEYLEKLVVESLDRSLRCNYEK 62
           + SLS + +E+ S+ + E+        P+++   M +D+ YL  +V  + ++ L    EK
Sbjct: 138 VISLSNYVVEIASLERIEL--------PVAEKGLMLVDDAYLSYVVRWANEK-LLKGKEK 188


>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
           genomics, center for structural genomics of infectious
           diseases; HET: MSE; 1.60A {Francisella tularensis subsp}
          Length = 663

 Score = 26.1 bits (56), Expect = 1.9
 Identities = 7/40 (17%), Positives = 21/40 (52%)

Query: 12  IEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKLVVES 51
           ++V +  +++   ++V S+P  +   T   EY + ++ + 
Sbjct: 565 VKVANEFEKKGIKLNVASIPCVEVFATQAHEYKKTVIKDD 604


>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM
          barrel, NYSGXRC, PSI-2, structural genomics; 1.90A
          {Oceanobacillus iheyensis HTE831}
          Length = 314

 Score = 25.4 bits (55), Expect = 3.7
 Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 18 LKEEIDDISVVSL-PLSDDNMTIDEEYLEKLV 48
            +    IS +++ P  +    ID + L+  V
Sbjct: 8  FSKRFSTISGINIVPFLEGTREIDWKGLDDNV 39


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.3 bits (55), Expect = 3.7
 Identities = 6/39 (15%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 6   SLSKWDIEVNSILKEEIDDISVVSLPLSDDNMTIDEEYL 44
            L +  ++   +  + ++   ++   L + + T D++YL
Sbjct: 197 ELIRTTLDAEKVFTQGLN---ILEW-LENPSNTPDKDYL 231


>2qgy_A Enolase from the environmental genome shotgun sequencing of the
           sargasso SEA; structural genomics, unknown function,
           PSI-2; 1.80A {Environmental sample}
          Length = 391

 Score = 24.3 bits (51), Expect = 6.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 37  MTIDEEYLEKLVVESLD 53
           + I E+ L +L + SLD
Sbjct: 362 IVIHEDILSELSIYSLD 378


>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical
          bundle, structural genomics, PSI, protein structure
          initiative; NMR {Pyrobaculum aerophilum} SCOP:
          d.203.1.1
          Length = 111

 Score = 23.9 bits (52), Expect = 9.1
 Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 2  GFITSLSKWDIEVNSILKEEIDDISVVSLPLSDDNMTI 39
           F+ +   WD +V   L  E++ I      +++++  +
Sbjct: 22 CFMQNPEDWDEKVAEWLARELEGI----QKMTEEHWKL 55


>3n4f_A Mandelate racemase/muconate lactonizing protein; structural
           genomics, protein structure INI NEW YORK structural
           genomix research consortium; HET: MSE; 1.88A
           {Geobacillus SP}
          Length = 392

 Score = 24.0 bits (51), Expect = 9.2
 Identities = 4/15 (26%), Positives = 8/15 (53%)

Query: 37  MTIDEEYLEKLVVES 51
           +  D+E +  L+  S
Sbjct: 367 IVFDDELVTYLINRS 381


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.313    0.133    0.362 

Gapped
Lambda     K      H
   0.267   0.0502    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 552,485
Number of extensions: 19809
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 16
Length of query: 63
Length of database: 5,693,230
Length adjustment: 34
Effective length of query: 29
Effective length of database: 4,868,934
Effective search space: 141199086
Effective search space used: 141199086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.6 bits)