HHsearch alignment for GI: 254780214 and conserved domain: COG1236
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].
Probab=99.49 E-value=1.2e-13 Score=104.44 Aligned_cols=187 Identities=21% Similarity=0.185 Sum_probs=101.0
Q ss_pred EEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHH--HHHC--CCCCCCEEE
Q ss_conf 599998541789651337887877778767744430699993367789718999879841566--7522--334205999
Q gi|254780214|r 5 YHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQ--VLRE--QVLSIDAVL 80 (271)
Q Consensus 5 m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~q--l~~~--~i~~Id~I~ 80 (271)
T Consensus 1 ~~~~~~g~~~ev---------------------g~s~~~l~~-----~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavl 54 (427)
T COG1236 1 MTLRFLGAAREV---------------------GRSCVLLET-----GGTRILLDCGLFPGDPSPERPLLPPFPKVDAVL 54 (427)
T ss_pred CCEECCCCCCCC---------------------CCEEEEEEE-----CCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 914534655787---------------------754689874-----797699658988576765576788888767799
Q ss_pred EECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCEECC
Q ss_conf 9743524220111024333178211101311202321002222101366775310012321-----12344333420115
Q gi|254780214|r 81 YTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPI-----VIENNDVPICMKSA 155 (271)
Q Consensus 81 iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 155 (271)
T Consensus 55 lTHaHlDH~g~lp~l----~~~~~~~~v~aT~~T~~l~~~~l~d~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~yg~~~~ 129 (427)
T COG1236 55 LTHAHLDHIGALPYL----VRNGFEGPVYATPPTAALLKVLLGDSLKLAEG-PDKPPYSEEDVERVPDLIRPLPYGEPVE 129 (427)
T ss_pred EECCCHHHHCCCHHH----HHHCCCCCEEECHHHHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHCEEEECCCCEEE
T ss_conf 600652432346788----76312786575351899999873111010357-7777654345665552227705898178
Q ss_pred CCCEEEEEEEEECCCEECCCCCC----CCEEEECCCCCCHHHHHHH---HCCHHEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf 87489999995077621123346----8625303233001678886---2221102530233576887579999999
Q gi|254780214|r 156 GGVIEAIPILQQHGRISSLGFRF----GNVAYCTDVNAFPAESLEK---LQNLDFLIIDALKNGLHSSHFSLSESLK 225 (271)
Q Consensus 156 ~~~i~i~~~~~~Hg~~~~~Gyri----~~~~Y~~Dt~~~~e~~~~~---l~~~D~lI~d~l~~~~~~~H~~~~ea~~ 225 (271)
T Consensus 130 v~~~~v~~~~AGHil-Gsa~~~le~~~~~ilytGD~~~~~~~l~~~a~~~~~~DvLI~EsTYg~--~~~~~r~~~e~ 203 (427)
T COG1236 130 VGGVKVTFYNAGHIL-GSAAILLEVDGGRILYTGDVKRRKDRLLNGAELPPCIDVLIVESTYGD--RLHPNRDEVER 203 (427)
T ss_pred ECCEEEEEECCCCCC-CEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCC--CCCCCHHHHHH
T ss_conf 652899997179741-027999996894799982367777877777677888878998065588--77888789999