HHsearch alignment for GI: 254780214 and conserved domain: PRK02126
>PRK02126 ribonuclease Z; Provisional.
Probab=100.00 E-value=3.6e-33 Score=225.84 Aligned_cols=206 Identities=17% Similarity=0.276 Sum_probs=142.0
Q ss_pred CEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEEC
Q ss_conf 06999933677897189998798415667522334205999974352422011102433317821110131120232100
Q gi|254780214|r 40 SSLKISRVSERGSNTTVIVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLF 119 (271)
Q Consensus 40 ~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~ 119 (271)
T Consensus 17 p~l~v~~~---~~~~~lLfDcGe--~~~l~~~~l~~Id~IFITHlHgDH~~GL~gLLr~~~gr~~~L~IyGP~Gl~~~v~ 91 (334)
T PRK02126 17 PGLYVDFL---FERRALLFDLGD--LHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRLCLGRPRRLRLFGPPGFADQVE 91 (334)
T ss_pred CEEEEEEC---CCCCEEEEECCC--CCCCCHHHHCCCCEEEEECCCCCHHCCCHHHHHHHCCCCCCEEEECCCCHHHHHH
T ss_conf 87999716---798189998998--4300645646547699826762212357999986279998629999824899999
Q ss_pred CCCC-CCCCCCCCCCCCCCCCCCC-----------------------CCCCCCCCCEECCCCCEEEEEEEEECCCEECCC
Q ss_conf 2222-1013667753100123211-----------------------234433342011587489999995077621123
Q gi|254780214|r 120 ESFR-YCFKALDDRTYPPIVNPIV-----------------------IENNDVPICMKSAGGVIEAIPILQQHGRISSLG 175 (271)
Q Consensus 120 ~~~~-y~f~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~i~i~~~~~~Hg~~~~~G 175 (271)
T Consensus 92 ~~L~~y~wnl~~--~~~~~~~v~~~e~~~~~~~~~~f~~~~~F~~~~~~~~~~~~~~i~e~~~~~V~a~~l~H-~ip~~g 168 (334)
T PRK02126 92 HKLAGYTWNLVE--NYPTTFRVHEVELHDGRIRRALFRCRRAFRREAEEELSREDGVLLDEPWFRVRAAFLDH-GIPCLA 168 (334)
T ss_pred HHHHHHHHCCCC--CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCC-CCCCCE
T ss_conf 986331110124--57741389999605653222112432123334322345778657857987999997479-876407
Q ss_pred CCCC-----------------------------------------------------------------------CEEEE
Q ss_conf 3468-----------------------------------------------------------------------62530
Q gi|254780214|r 176 FRFG-----------------------------------------------------------------------NVAYC 184 (271)
Q Consensus 176 yri~-----------------------------------------------------------------------~~~Y~ 184 (271)
T Consensus 169 Y~i~E~~~~~i~~~kl~~~Gv~~Gp~l~~LK~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~l~~~v~~~~~G~ki~y~ 248 (334)
T PRK02126 169 FALEEKAHVNIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVPWRDGGGERERTRPLGELKEAILRIVPGQKIGYV 248 (334)
T ss_pred EEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEE
T ss_conf 99997887671899999769998738999976553146688458842255665554335402322201457899789999
Q ss_pred CCCCCCHH---HHHHHHCCHHEEEEECCCCCC------CCCCCCHHHHHHHHHHCCCCEEEEECCCCCCC--HHHHHHHC
Q ss_conf 32330016---788862221102530233576------88757999999999972997799976888988--88999867
Q gi|254780214|r 185 TDVNAFPA---ESLEKLQNLDFLIIDALKNGL------HSSHFSLSESLKKIELINPKNAILTHMHVDLD--YDMVLKST 253 (271)
Q Consensus 185 ~Dt~~~~e---~~~~~l~~~D~lI~d~l~~~~------~~~H~~~~ea~~~~~~~~~k~~~LtHls~~~~--~~~~~~~~ 253 (271)
T Consensus 249 tDT~~~~~n~~~i~~~a~~aDlLvhEaTF~~~d~~~A~~~~HsTa~qAa~iAk~a~vk~LiLtHfS~RY~~~~~~l~~Ea 328 (334)
T PRK02126 249 TDIGYTPENLARIVELAAGVDLLFIEAVFLDEDAEKARRKNHLTARQAGRLAREAGVRRLVPFHFSPRYQGRPAELYREA 328 (334)
T ss_pred EECCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHH
T ss_conf 76788811789999986479899996567622798886559985999999999859998998750634589869999999