HHsearch alignment for GI: 254780214 and conserved domain: TIGR02649
>TIGR02649 true_RNase_BN ribonuclease BN; InterPro: IPR013469 Proteins in this entry include ribonuclease BN of Escherichia coli (strain K-12) and closely related proteins believed to be equivalent in function. E. coli appears to lack RNase Z, and this ribonuclease appears to be orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. ; GO: 0016891 endoribonuclease activity producing 5'-phosphomonoesters, 0042779 removal of tRNA 3'-trailer sequence.
Probab=99.95 E-value=1.3e-27 Score=191.23 Aligned_cols=231 Identities=19% Similarity=0.270 Sum_probs=171.0
Q ss_pred EEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHC--CCCCCCEEEEEC
Q ss_conf 999985417896513378878777787677444306999933677897189998798415667522--334205999974
Q gi|254780214|r 6 HFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLRE--QVLSIDAVLYTH 83 (271)
Q Consensus 6 ~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~--~i~~Id~I~iTH 83 (271)
T Consensus 1 eliflGts--aGvPt-----------r~---rnvtaill~lqhPt-q~G~WlfdCGeGtqhq~l~taf~PGkl~~ifish 63 (304)
T TIGR02649 1 ELIFLGTS--AGVPT-----------RS---RNVTAILLNLQHPT-QSGLWLFDCGEGTQHQLLNTAFNPGKLEKIFISH 63 (304)
T ss_pred CEEEEECC--CCCCC-----------CC---HHHHHHEEECCCCC-CCCEEEEECCCCHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 94774215--68875-----------51---01200001004877-6740688768752678887414887500357542
Q ss_pred CCHHHHHHCCHH---HHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEE
Q ss_conf 352422011102---43331782111013112023210022221013667753100123211234433342011587489
Q gi|254780214|r 84 PHADHIHGIDGL---RGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIE 160 (271)
Q Consensus 84 ~H~DHi~Gl~~L---r~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 160 (271)
T Consensus 64 lhGdhlfGlPGllCsrsm-~G~~~Plt~yGPqG~ref~~t~lr~-sGsWtd---------~Pl~i~ei~aG~ilddGlrk 132 (304)
T TIGR02649 64 LHGDHLFGLPGLLCSRSM-AGIIQPLTVYGPQGVREFVETALRL-SGSWTD---------YPLEIVEISAGEILDDGLRK 132 (304)
T ss_pred ECCCCCCCCCHHHHHHHH-CCCCCCEEEECCCHHHHHHHHHHHH-CCCCCC---------CCEEEEEECCCCHHHHCCHH
T ss_conf 236500155313443331-3777640675662168898766421-111013---------65157862254112200010
Q ss_pred EEEEEEECCCEECCCCCCC------------------------------------------------------CEEEECC
Q ss_conf 9999950776211233468------------------------------------------------------6253032
Q gi|254780214|r 161 AIPILQQHGRISSLGFRFG------------------------------------------------------NVAYCTD 186 (271)
Q Consensus 161 i~~~~~~Hg~~~~~Gyri~------------------------------------------------------~~~Y~~D 186 (271)
T Consensus 133 vta~~leh-PleCyGyr~~ehdkPGalna~alkaaGv~PGPlfq~lkaGkt~tl~dGrqinGadyla~~v~Gk~~aifGd 211 (304)
T TIGR02649 133 VTAYRLEH-PLECYGYRVVEHDKPGALNARALKAAGVTPGPLFQELKAGKTVTLEDGRQINGADYLAAAVAGKALAIFGD 211 (304)
T ss_pred EEEECCCC-CCEECCEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHCCCEEEECCCCEECCCHHHCCCCCCCEEEEECC
T ss_conf 01201468-61001106775178750224777645899851467653486577226742033011012468755898527
Q ss_pred CCCCHHHHHHHHCCHHEEEEECCCC------CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHH-------HHHC
Q ss_conf 3300167888622211025302335------76887579999999999729977999768889888899-------9867
Q gi|254780214|r 187 VNAFPAESLEKLQNLDFLIIDALKN------GLHSSHFSLSESLKKIELINPKNAILTHMHVDLDYDMV-------LKST 253 (271)
Q Consensus 187 t~~~~e~~~~~l~~~D~lI~d~l~~------~~~~~H~~~~ea~~~~~~~~~k~~~LtHls~~~~~~~~-------~~~~ 253 (271)
T Consensus 212 t~P-C~aal~la~Gvdvmvhe~tld~~me~kan~rGhsstrq~atlarea~vG~li~th~ssryddkGCq~ll~eCr~if 290 (304)
T TIGR02649 212 TAP-CEAALDLAKGVDVMVHEATLDISMEEKANARGHSSTRQAATLAREAAVGKLIITHVSSRYDDKGCQRLLAECRAIF 290 (304)
T ss_pred CCH-HHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 750-5899997568447885002313466542015652024566665542024044542000003256899998765313
Q ss_pred CCCCEEEEECCEEE
Q ss_conf 99819902044899
Q gi|254780214|r 254 PSRVVPAFDGMQFS 267 (271)
Q Consensus 254 ~~~v~~A~DGm~i~ 267 (271)
T Consensus 291 P-atela~df~vf~ 303 (304)
T TIGR02649 291 P-ATELAYDFSVFN 303 (304)
T ss_pred C-HHHHHCCCEEEC
T ss_conf 3-124320212313