HHsearch alignment for GI: 254780214 and conserved domain: TIGR02651

>TIGR02651 RNase_Z ribonuclease Z; InterPro: IPR013471 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule. In many bacteria the tRNA precursors do not contain the CCA sequence which forms the 3' end of the mature tRNA and is essential for aminoacylation. In these organisms ribonucleotide Z cleaves the precursor to form a 3' end to which CCA is added. Species where all tRNA sequences already have the CCA tail, such as E. coli, do not generally posses this form of ribonuclease Z. ; GO: 0016891 endoribonuclease activity producing 5'-phosphomonoesters, 0042779 removal of tRNA 3'-trailer sequence.
Probab=100.00  E-value=0  Score=333.74  Aligned_cols=238  Identities=28%  Similarity=0.371  Sum_probs=180.5

Q ss_pred             EEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCC--CCCCEEEEEC
Q ss_conf             99998541789651337887877778767744430699993367789718999879841566752233--4205999974
Q gi|254780214|r    6 HFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQV--LSIDAVLYTH   83 (271)
Q Consensus         6 ~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~~i--~~Id~I~iTH   83 (271)
T Consensus         1 ~i~fLGTGg--~~Pt~--------------~Rn~~si~l~~~~e~--g~~~LFDCGEGTQ~Q~~~~~~~~~~i~~IFITH   62 (327)
T TIGR02651         1 EITFLGTGG--GVPTK--------------ERNVSSIALKLEDER--GELWLFDCGEGTQRQMLRSGISPMKIDRIFITH   62 (327)
T ss_pred             CEEEEECCC--CCCCC--------------CCCCCEEEEECHHHC--CCEEEEECCCHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf             958985277--88775--------------647758999602242--874255477189999997168863111368706


Q ss_pred             CCHHHHHHCCHHHH-HH-H--CCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------
Q ss_conf             35242201110243-33-1--782111013112023210022221013667753100123211234433-----------
Q gi|254780214|r   84 PHADHIHGIDGLRG-YF-L--KQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDV-----------  148 (271)
Q Consensus        84 ~H~DHi~Gl~~Lr~-~~-~--~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~-----------  148 (271)
T Consensus        63 ~HGDHi~GLPGLl~t~sf~G~~r~~pL~IyGP~G~~e~~~~~l~~~~~~---~~y~i--~~~E~~~~~~~P~~~~~k~k~  137 (327)
T TIGR02651        63 LHGDHILGLPGLLSTMSFQGGGRKEPLTIYGPPGIKEFIETSLRVSYTY---LNYPI--KIHEIEEKGVLPEFVVYKEKL  137 (327)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCC---CCCCE--EEEEECCCCCCCHHHHHCCCE
T ss_conf             6314554236888831037888644528868744799999999862237---88415--999726899773123102561


Q ss_pred             -CCCEECCCCCEEEEEEEEECCCEECCCCCCC------------------------------------------------
Q ss_conf             -3420115874899999950776211233468------------------------------------------------
Q gi|254780214|r  149 -PICMKSAGGVIEAIPILQQHGRISSLGFRFG------------------------------------------------  179 (271)
Q Consensus       149 -~~~~~~~~~~i~i~~~~~~Hg~~~~~Gyri~------------------------------------------------  179 (271)
T Consensus       138 l~~~~~~~~~~f~v~~~~l~H-~~~~~GY~~~Ekd~~g~~~~eka~~~g~p~Gp~~~~L~~G~~v~~~~G~~i~~~~v~G  216 (327)
T TIGR02651       138 LEDGLVFEDDGFKVEAFPLDH-SIPSLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLG  216 (327)
T ss_pred             EECCEEEECCCEEEEEEECCC-CCEEEEEEEEECCCCCCCCHHHHHHCCCCCCHHHHHHHCCCEEEECCCEEECHHHHCC
T ss_conf             202326765844899995057-8414678998638899873899995589977368997658618963886878034058


Q ss_pred             ------CEEEECCCCCCHHHHHHHHCCHHEEEEECCCCC-CC------CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf             ------625303233001678886222110253023357-68------87579999999999729977999768889888
Q gi|254780214|r  180 ------NVAYCTDVNAFPAESLEKLQNLDFLIIDALKNG-LH------SSHFSLSESLKKIELINPKNAILTHMHVDLDY  246 (271)
Q Consensus       180 ------~~~Y~~Dt~~~~e~~~~~l~~~D~lI~d~l~~~-~~------~~H~~~~ea~~~~~~~~~k~~~LtHls~~~~~  246 (271)
T Consensus       217 ~~rkG~~~~y~gDT~p-~~~~~~~a~~~DlLiHEaTF~~~~~~~~A~e~~HST~~~AA~~Ak~A~Vk~L~LTH~S~RY~~  295 (327)
T TIGR02651       217 PPRKGRKIVYTGDTRP-CEEVIELAKNADLLIHEATFLDSEDKKLAKEYGHSTAAQAAEIAKEANVKKLILTHISPRYTD  295 (327)
T ss_pred             CCCCCEEEEEEECCCC-CHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf             7888608999717754-778999983198899805777712589998607983899999998707755898885266786


Q ss_pred             ------HHH---H-HHCCCCCEEEEECCEEEE
Q ss_conf             ------899---9-867998199020448996
Q gi|254780214|r  247 ------DMV---L-KSTPSRVVPAFDGMQFSS  268 (271)
Q Consensus       247 ------~~~---~-~~~~~~v~~A~DGm~i~l  268 (271)
T Consensus       296 ~~~~~~~~ll~eAr~~~f~~~~~a~D~~~~~i  327 (327)
T TIGR02651       296 DESDDLEELLEEARKKIFPNTYIAEDFMEIEI  327 (327)
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEEECCCEEEEC
T ss_conf             32110799999973145776488414106619