HHsearch alignment for GI: 254780214 and conserved domain: TIGR02651
>TIGR02651 RNase_Z ribonuclease Z; InterPro: IPR013471 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule. In many bacteria the tRNA precursors do not contain the CCA sequence which forms the 3' end of the mature tRNA and is essential for aminoacylation. In these organisms ribonucleotide Z cleaves the precursor to form a 3' end to which CCA is added. Species where all tRNA sequences already have the CCA tail, such as E. coli, do not generally posses this form of ribonuclease Z. ; GO: 0016891 endoribonuclease activity producing 5'-phosphomonoesters, 0042779 removal of tRNA 3'-trailer sequence.
Probab=100.00 E-value=0 Score=333.74 Aligned_cols=238 Identities=28% Similarity=0.371 Sum_probs=180.5
Q ss_pred EEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCC--CCCCEEEEEC
Q ss_conf 99998541789651337887877778767744430699993367789718999879841566752233--4205999974
Q gi|254780214|r 6 HFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQV--LSIDAVLYTH 83 (271)
Q Consensus 6 ~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~~i--~~Id~I~iTH 83 (271)
T Consensus 1 ~i~fLGTGg--~~Pt~--------------~Rn~~si~l~~~~e~--g~~~LFDCGEGTQ~Q~~~~~~~~~~i~~IFITH 62 (327)
T TIGR02651 1 EITFLGTGG--GVPTK--------------ERNVSSIALKLEDER--GELWLFDCGEGTQRQMLRSGISPMKIDRIFITH 62 (327)
T ss_pred CEEEEECCC--CCCCC--------------CCCCCEEEEECHHHC--CCEEEEECCCHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 958985277--88775--------------647758999602242--874255477189999997168863111368706
Q ss_pred CCHHHHHHCCHHHH-HH-H--CCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------
Q ss_conf 35242201110243-33-1--782111013112023210022221013667753100123211234433-----------
Q gi|254780214|r 84 PHADHIHGIDGLRG-YF-L--KQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDV----------- 148 (271)
Q Consensus 84 ~H~DHi~Gl~~Lr~-~~-~--~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~----------- 148 (271)
T Consensus 63 ~HGDHi~GLPGLl~t~sf~G~~r~~pL~IyGP~G~~e~~~~~l~~~~~~---~~y~i--~~~E~~~~~~~P~~~~~k~k~ 137 (327)
T TIGR02651 63 LHGDHILGLPGLLSTMSFQGGGRKEPLTIYGPPGIKEFIETSLRVSYTY---LNYPI--KIHEIEEKGVLPEFVVYKEKL 137 (327)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCC---CCCCE--EEEEECCCCCCCHHHHHCCCE
T ss_conf 6314554236888831037888644528868744799999999862237---88415--999726899773123102561
Q ss_pred -CCCEECCCCCEEEEEEEEECCCEECCCCCCC------------------------------------------------
Q ss_conf -3420115874899999950776211233468------------------------------------------------
Q gi|254780214|r 149 -PICMKSAGGVIEAIPILQQHGRISSLGFRFG------------------------------------------------ 179 (271)
Q Consensus 149 -~~~~~~~~~~i~i~~~~~~Hg~~~~~Gyri~------------------------------------------------ 179 (271)
T Consensus 138 l~~~~~~~~~~f~v~~~~l~H-~~~~~GY~~~Ekd~~g~~~~eka~~~g~p~Gp~~~~L~~G~~v~~~~G~~i~~~~v~G 216 (327)
T TIGR02651 138 LEDGLVFEDDGFKVEAFPLDH-SIPSLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLG 216 (327)
T ss_pred EECCEEEECCCEEEEEEECCC-CCEEEEEEEEECCCCCCCCHHHHHHCCCCCCHHHHHHHCCCEEEECCCEEECHHHHCC
T ss_conf 202326765844899995057-8414678998638899873899995589977368997658618963886878034058
Q ss_pred ------CEEEECCCCCCHHHHHHHHCCHHEEEEECCCCC-CC------CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf ------625303233001678886222110253023357-68------87579999999999729977999768889888
Q gi|254780214|r 180 ------NVAYCTDVNAFPAESLEKLQNLDFLIIDALKNG-LH------SSHFSLSESLKKIELINPKNAILTHMHVDLDY 246 (271)
Q Consensus 180 ------~~~Y~~Dt~~~~e~~~~~l~~~D~lI~d~l~~~-~~------~~H~~~~ea~~~~~~~~~k~~~LtHls~~~~~ 246 (271)
T Consensus 217 ~~rkG~~~~y~gDT~p-~~~~~~~a~~~DlLiHEaTF~~~~~~~~A~e~~HST~~~AA~~Ak~A~Vk~L~LTH~S~RY~~ 295 (327)
T TIGR02651 217 PPRKGRKIVYTGDTRP-CEEVIELAKNADLLIHEATFLDSEDKKLAKEYGHSTAAQAAEIAKEANVKKLILTHISPRYTD 295 (327)
T ss_pred CCCCCEEEEEEECCCC-CHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 7888608999717754-778999983198899805777712589998607983899999998707755898885266786
Q ss_pred ------HHH---H-HHCCCCCEEEEECCEEEE
Q ss_conf ------899---9-867998199020448996
Q gi|254780214|r 247 ------DMV---L-KSTPSRVVPAFDGMQFSS 268 (271)
Q Consensus 247 ------~~~---~-~~~~~~v~~A~DGm~i~l 268 (271)
T Consensus 296 ~~~~~~~~ll~eAr~~~f~~~~~a~D~~~~~i 327 (327)
T TIGR02651 296 DESDDLEELLEEARKKIFPNTYIAEDFMEIEI 327 (327)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEECCCEEEEC
T ss_conf 32110799999973145776488414106619