HHsearch results for GI: 254780214 and protein with PDBid: 1vme_A
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3
Probab=98.84 E-value=2e-09 Score=76.85 Aligned_cols=122 Identities=11% Similarity=0.149 Sum_probs=65.0
Q ss_pred EEEEEECCCCCCCEEEEEECCC-CHHHHHH---HC--CCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEE
Q ss_conf 6999933677897189998798-4156675---22--3342059999743524220111024333178211101311202
Q gi|254780214|r 41 SLKISRVSERGSNTTVIVDTGP-DFYMQVL---RE--QVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDC 114 (271)
Q Consensus 41 s~~i~~~~~~~~~~~iLiD~G~-d~r~ql~---~~--~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~ 114 (271)
|-+|. ++++.+|||+|. ....+++ +. +.++|++|++||.|.||++|++.|+.-+ ....+||+++..
T Consensus 54 sYLI~-----~~~~~vLIDtg~~~~~~~~l~~l~~~i~~~~I~yIi~TH~H~DH~Ggl~~l~~~~---~~~~~i~~~~~~ 125 (410)
T 1vme_A 54 AYLVK-----LNGANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTI---GHDVEIIASNFG 125 (410)
T ss_dssp EEEEE-----CSSCEEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCCHHHHTTHHHHHHHH---CSCCEEEECHHH
T ss_pred EEEEE-----ECCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHH---CCCCEEEECHHH
T ss_conf 99999-----7995799919975679999999997579767689994939653775499999970---999899978888
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEECCCEECCCCCCCCEEEECCC
Q ss_conf 3210022221013667753100123211234433342011587489999995077621123346862530323
Q gi|254780214|r 115 MKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGNVAYCTDV 187 (271)
Q Consensus 115 ~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~Hg~~~~~Gyri~~~~Y~~Dt 187 (271)
.+.+...+. .. ....++. .......+..+++.+.+..|.+...+-| ..++.|++|.
T Consensus 126 ~~~~~~~~~----~~---------~~~~v~~---g~~l~lG~~~l~~i~~P~~H~p~~~~~y-~~~iLFsgD~ 181 (410)
T 1vme_A 126 KRLLEGFYG----IK---------DVTVVKD---GEEREIGGKKFKFVMTPWLHWPDTMVTY-LDGILFSCDV 181 (410)
T ss_dssp HHHHHHHHC----CC---------CCEECCT---TCEEEETTEEEEEEECTTSSSTTCEEEE-ETTEEEEETT
T ss_pred HHHHHHCCC----CC---------CCEEECC---CCEEEECCEEEEEEECCCCCCCCCCCEE-ECCEEEECCC
T ss_conf 642010167----65---------3168357---9999866726999978998889971021-2898998863