HHsearch results for GI: 254780214 and protein with PDBid: 2cbn_A

>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=100.00  E-value=3.9e-44  Score=292.56  Aligned_cols=236  Identities=18%  Similarity=0.216  Sum_probs=167.9

Q ss_pred             EEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCC--CCCCEEEE
Q ss_conf             2599998541789651337887877778767744430699993367789718999879841566752233--42059999
Q gi|254780214|r    4 YYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQV--LSIDAVLY   81 (271)
Q Consensus         4 ~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~~i--~~Id~I~i   81 (271)
                      .|||+|||||++  +|..              .|..||++|+..... ++.+||||||++++.||.+.++  ++||+|||
T Consensus         1 ~M~l~~LGtg~~--~p~~--------------~r~~s~~lv~~~~~~-~~~~iL~DcG~g~~~~l~~~~~~~~~i~~Ifi   63 (306)
T 2cbn_A            1 AMNLIFLGTSAG--VPTR--------------TRNVTAILLNLQHPT-QSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFI   63 (306)
T ss_dssp             CCEEEEEECBSS--SCCS--------------SCCBCEEEEECCCSS-CCCEEEECCCTTHHHHHHTSCCCTTTEEEEEC
T ss_pred             CCEEEEECCCCC--CCCC--------------CCCCCEEEEEEECCC-CCCEEEEECCHHHHHHHHHHCCCHHHCCEEEE
T ss_conf             928999776899--8999--------------996488999972688-99489999975899999981899667758998


Q ss_pred             ECCCHHHHHHCCHHHH--HHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCE
Q ss_conf             7435242201110243--33178211101311202321002222101366775310012321123443334201158748
Q gi|254780214|r   82 THPHADHIHGIDGLRG--YFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVI  159 (271)
Q Consensus        82 TH~H~DHi~Gl~~Lr~--~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (271)
                      ||.|+||+.||+.|..  +...+.+|+.||+|++..+.++..+....... .         ..++..+.........+.+
T Consensus        64 TH~H~DH~~Gl~~ll~~~~~~~~~~~l~i~gP~~~~~~l~~~~~~~~~~~-~---------~~~~~~e~~~~~~~~~~~~  133 (306)
T 2cbn_A           64 SHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWT-D---------YPLEIVEIGAGEILDDGLR  133 (306)
T ss_dssp             SCCCHHHHTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHTTCCC-S---------SCEEEEECCSEEEEECSSE
T ss_pred             ECCCHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-C---------CCCEEEECCCCCEEECCCE
T ss_conf             34668980784013310120378987656686778999999986532444-4---------4412332135411203752


Q ss_pred             EEEEEEEECCCEECCCCCC------------------------------------------------------CCEEEEC
Q ss_conf             9999995077621123346------------------------------------------------------8625303
Q gi|254780214|r  160 EAIPILQQHGRISSLGFRF------------------------------------------------------GNVAYCT  185 (271)
Q Consensus       160 ~i~~~~~~Hg~~~~~Gyri------------------------------------------------------~~~~Y~~  185 (271)
                      .+.+.+..| ..++.||++                                                      .+++|++
T Consensus       134 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~sg  212 (306)
T 2cbn_A          134 KVTAYPLEH-PLECYGYRIEEHDAPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFG  212 (306)
T ss_dssp             EEEEEECBS-SSCCEEEEEEECCCCCCBCHHHHHHTTCCSSHHHHHHHHTCCCEETTTEECCGGGTBCCCCCCCEEEECC
T ss_pred             EEEEEECCC-CCCCCCCEEEECCCCCCCCHHHHHHCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECC
T ss_conf             565430355-5443220122025666420767876089972145540578559996312124300234345786456526


Q ss_pred             CCCCCHHHHHHHHCCHHEEEEECCCCCCC------CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHH------HHHC
Q ss_conf             23300167888622211025302335768------87579999999999729977999768889888899------9867
Q gi|254780214|r  186 DVNAFPAESLEKLQNLDFLIIDALKNGLH------SSHFSLSESLKKIELINPKNAILTHMHVDLDYDMV------LKST  253 (271)
Q Consensus       186 Dt~~~~e~~~~~l~~~D~lI~d~l~~~~~------~~H~~~~ea~~~~~~~~~k~~~LtHls~~~~~~~~------~~~~  253 (271)
                      ||.. ++++.++++++|+||+||+.....      ++|+|++||++++++++||+++|||+|+..+.+++      .++.
T Consensus       213 Dt~~-~~~l~~~~~~~d~LIhE~t~~~~~~~~a~~~~Hst~~~a~~~a~~~~~k~lvLtH~s~ry~~~~~~~~~~e~~~~  291 (306)
T 2cbn_A          213 DTGP-CDAALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSI  291 (306)
T ss_dssp             SCBS-CSTHHHHHTTCSEEEEECCBCGGGHHHHHHTTCCBHHHHHHHHHHHTCSEEEEECBCTTCCHHHHHHHHHHHHTT
T ss_pred             CCCC-CHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             6676-645655431564577733335244515467899999999999998499989998988577964599999999987


Q ss_pred             CCCCEEEEECCEEEE
Q ss_conf             998199020448996
Q gi|254780214|r  254 PSRVVPAFDGMQFSS  268 (271)
Q Consensus       254 ~~~v~~A~DGm~i~l  268 (271)
                      ..|+.+|+|||+|+|
T Consensus       292 ~~~~~~a~D~~~i~i  306 (306)
T 2cbn_A          292 FPATELANDFTVFNV  306 (306)
T ss_dssp             CSCEEECCTTCEEEC
T ss_pred             CCCEEECCCCCEEEC
T ss_conf             899399379989979