HHsearch results for GI: 254780214 and protein with PDBid: 2cbn_A
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=100.00 E-value=3.9e-44 Score=292.56 Aligned_cols=236 Identities=18% Similarity=0.216 Sum_probs=167.9
Q ss_pred EEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCC--CCCCEEEE
Q ss_conf 2599998541789651337887877778767744430699993367789718999879841566752233--42059999
Q gi|254780214|r 4 YYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQV--LSIDAVLY 81 (271)
Q Consensus 4 ~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~~i--~~Id~I~i 81 (271)
.|||+|||||++ +|.. .|..||++|+..... ++.+||||||++++.||.+.++ ++||+|||
T Consensus 1 ~M~l~~LGtg~~--~p~~--------------~r~~s~~lv~~~~~~-~~~~iL~DcG~g~~~~l~~~~~~~~~i~~Ifi 63 (306)
T 2cbn_A 1 AMNLIFLGTSAG--VPTR--------------TRNVTAILLNLQHPT-QSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFI 63 (306)
T ss_dssp CCEEEEEECBSS--SCCS--------------SCCBCEEEEECCCSS-CCCEEEECCCTTHHHHHHTSCCCTTTEEEEEC
T ss_pred CCEEEEECCCCC--CCCC--------------CCCCCEEEEEEECCC-CCCEEEEECCHHHHHHHHHHCCCHHHCCEEEE
T ss_conf 928999776899--8999--------------996488999972688-99489999975899999981899667758998
Q ss_pred ECCCHHHHHHCCHHHH--HHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCE
Q ss_conf 7435242201110243--33178211101311202321002222101366775310012321123443334201158748
Q gi|254780214|r 82 THPHADHIHGIDGLRG--YFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVI 159 (271)
Q Consensus 82 TH~H~DHi~Gl~~Lr~--~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (271)
||.|+||+.||+.|.. +...+.+|+.||+|++..+.++..+....... . ..++..+.........+.+
T Consensus 64 TH~H~DH~~Gl~~ll~~~~~~~~~~~l~i~gP~~~~~~l~~~~~~~~~~~-~---------~~~~~~e~~~~~~~~~~~~ 133 (306)
T 2cbn_A 64 SHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWT-D---------YPLEIVEIGAGEILDDGLR 133 (306)
T ss_dssp SCCCHHHHTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHTTCCC-S---------SCEEEEECCSEEEEECSSE
T ss_pred ECCCHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-C---------CCCEEEECCCCCEEECCCE
T ss_conf 34668980784013310120378987656686778999999986532444-4---------4412332135411203752
Q ss_pred EEEEEEEECCCEECCCCCC------------------------------------------------------CCEEEEC
Q ss_conf 9999995077621123346------------------------------------------------------8625303
Q gi|254780214|r 160 EAIPILQQHGRISSLGFRF------------------------------------------------------GNVAYCT 185 (271)
Q Consensus 160 ~i~~~~~~Hg~~~~~Gyri------------------------------------------------------~~~~Y~~ 185 (271)
.+.+.+..| ..++.||++ .+++|++
T Consensus 134 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~sg 212 (306)
T 2cbn_A 134 KVTAYPLEH-PLECYGYRIEEHDAPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFG 212 (306)
T ss_dssp EEEEEECBS-SSCCEEEEEEECCCCCCBCHHHHHHTTCCSSHHHHHHHHTCCCEETTTEECCGGGTBCCCCCCCEEEECC
T ss_pred EEEEEECCC-CCCCCCCEEEECCCCCCCCHHHHHHCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECC
T ss_conf 565430355-5443220122025666420767876089972145540578559996312124300234345786456526
Q ss_pred CCCCCHHHHHHHHCCHHEEEEECCCCCCC------CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHH------HHHC
Q ss_conf 23300167888622211025302335768------87579999999999729977999768889888899------9867
Q gi|254780214|r 186 DVNAFPAESLEKLQNLDFLIIDALKNGLH------SSHFSLSESLKKIELINPKNAILTHMHVDLDYDMV------LKST 253 (271)
Q Consensus 186 Dt~~~~e~~~~~l~~~D~lI~d~l~~~~~------~~H~~~~ea~~~~~~~~~k~~~LtHls~~~~~~~~------~~~~ 253 (271)
||.. ++++.++++++|+||+||+..... ++|+|++||++++++++||+++|||+|+..+.+++ .++.
T Consensus 213 Dt~~-~~~l~~~~~~~d~LIhE~t~~~~~~~~a~~~~Hst~~~a~~~a~~~~~k~lvLtH~s~ry~~~~~~~~~~e~~~~ 291 (306)
T 2cbn_A 213 DTGP-CDAALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSI 291 (306)
T ss_dssp SCBS-CSTHHHHHTTCSEEEEECCBCGGGHHHHHHTTCCBHHHHHHHHHHHTCSEEEEECBCTTCCHHHHHHHHHHHHTT
T ss_pred CCCC-CHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 6676-645655431564577733335244515467899999999999998499989998988577964599999999987
Q ss_pred CCCCEEEEECCEEEE
Q ss_conf 998199020448996
Q gi|254780214|r 254 PSRVVPAFDGMQFSS 268 (271)
Q Consensus 254 ~~~v~~A~DGm~i~l 268 (271)
..|+.+|+|||+|+|
T Consensus 292 ~~~~~~a~D~~~i~i 306 (306)
T 2cbn_A 292 FPATELANDFTVFNV 306 (306)
T ss_dssp CSCEEECCTTCEEEC
T ss_pred CCCEEECCCCCEEEC
T ss_conf 899399379989979