HHsearch results for GI: 254780214 and protein with PDBid: 2xr1_A

>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=99.67  E-value=3.6e-17  Score=125.01  Aligned_cols=175  Identities=21%  Similarity=0.235  Sum_probs=99.8

Q ss_pred             CCEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHH--H----H---HHCC
Q ss_conf             87259999854178965133788787777876774443069999336778971899987984156--6----7---5223
Q gi|254780214|r    2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYM--Q----V---LREQ   72 (271)
Q Consensus         2 ~~~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~--q----l---~~~~   72 (271)
                      ++..|+|+||-..-     +                .+++.+|+.     ++.+||+|||-.+..  +    .   .-..
T Consensus       181 ~~~irit~LGG~~E-----I----------------Grsc~lv~~-----~~~~ILlDcG~~~~~~~~~~~~~~~p~~~~  234 (640)
T 2xr1_A          181 DQWVRVTALGGCKE-----V----------------GRSCFLLST-----PESRILIDCGVNVGSDENMTPYLYVPEVFP  234 (640)
T ss_dssp             CCCCEEEEEECSSS-----S----------------BCCEEEEEC-----SSCEEEECCCCBCSSCSSCCCCTTSTTTCS
T ss_pred             CCEEEEEEECCCCC-----C----------------CCCEEEEEE-----CCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98089999478886-----1----------------527799996-----896999988888785233574435577687


Q ss_pred             CCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCC-CCC---CCCCCCCCCCC------CCCCCC
Q ss_conf             34205999974352422011102433317821110131120232100222-210---13667753100------123211
Q gi|254780214|r   73 VLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESF-RYC---FKALDDRTYPP------IVNPIV  142 (271)
Q Consensus        73 i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~-~y~---f~~~~~~~~~~------~~~~~~  142 (271)
                      +++||||||||+|.||+++|+.|    +..+...|||+++.|.+.+...+ +|.   .+......|..      ......
T Consensus       235 l~~iDAV~LTHaH~DH~G~Lp~L----~k~g~~~PIY~T~~T~~L~~~ll~d~~~~~~~~~~~~~y~~~~i~~~~~~~i~  310 (640)
T 2xr1_A          235 LNQIDAVIVTHAHLDHQGLVPLL----FKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIP  310 (640)
T ss_dssp             GGGCCEEECCSSCHHHHTTHHHH----HHTTCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEE
T ss_pred             HHHCCEEEECCCCHHHHCCHHHH----HHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEE
T ss_conf             30188999888976763865999----85289988997779999999999999987664234688788999988850685


Q ss_pred             CCCCCCCCCEECCCCCEEEEEEEEECCCEECCC-CCCC----CEEEECCCCCCHHHHH----HHHCCHHEEEEECCC
Q ss_conf             234433342011587489999995077621123-3468----6253032330016788----862221102530233
Q gi|254780214|r  143 IENNDVPICMKSAGGVIEAIPILQQHGRISSLG-FRFG----NVAYCTDVNAFPAESL----EKLQNLDFLIIDALK  210 (271)
Q Consensus       143 ~~~~~~~~~~~~~~~~i~i~~~~~~Hg~~~~~G-yri~----~~~Y~~Dt~~~~e~~~----~~l~~~D~lI~d~l~  210 (271)
                      ++..   ... .-+.+++++++.+.|....+.+ +.++    +++|++|.+.-....+    .....+|++|.+++.
T Consensus       311 l~y~---e~~-~i~~di~Vt~~~aGHslGsA~~~~~I~~g~~~IvyTGDfr~~~~~~l~~a~~~~~~~d~lIlesTy  383 (640)
T 2xr1_A          311 LDYE---EVT-DIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYEKTRLFDPAVNKFPRVETVISEATY  383 (640)
T ss_dssp             CCTT---CCE-EEETTEEEEEEECSSSTTCEEEEEEETTTTEEEEECCSCCSSCCSSCCCCCCBCSCCSEEEEECTT
T ss_pred             CCCC---CEE-EECCCCEEEEEECCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHEECCC
T ss_conf             5899---769-957971799972687786500578995088269973785667675558654301221222100123