HHsearch results for GI: 254780214 and protein with PDBid: 2xr1_A
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=99.67 E-value=3.6e-17 Score=125.01 Aligned_cols=175 Identities=21% Similarity=0.235 Sum_probs=99.8
Q ss_pred CCEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHH--H----H---HHCC
Q ss_conf 87259999854178965133788787777876774443069999336778971899987984156--6----7---5223
Q gi|254780214|r 2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYM--Q----V---LREQ 72 (271)
Q Consensus 2 ~~~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~--q----l---~~~~ 72 (271)
++..|+|+||-..- + .+++.+|+. ++.+||+|||-.+.. + . .-..
T Consensus 181 ~~~irit~LGG~~E-----I----------------Grsc~lv~~-----~~~~ILlDcG~~~~~~~~~~~~~~~p~~~~ 234 (640)
T 2xr1_A 181 DQWVRVTALGGCKE-----V----------------GRSCFLLST-----PESRILIDCGVNVGSDENMTPYLYVPEVFP 234 (640)
T ss_dssp CCCCEEEEEECSSS-----S----------------BCCEEEEEC-----SSCEEEECCCCBCSSCSSCCCCTTSTTTCS
T ss_pred CCEEEEEEECCCCC-----C----------------CCCEEEEEE-----CCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98089999478886-----1----------------527799996-----896999988888785233574435577687
Q ss_pred CCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCC-CCC---CCCCCCCCCCC------CCCCCC
Q ss_conf 34205999974352422011102433317821110131120232100222-210---13667753100------123211
Q gi|254780214|r 73 VLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESF-RYC---FKALDDRTYPP------IVNPIV 142 (271)
Q Consensus 73 i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~-~y~---f~~~~~~~~~~------~~~~~~ 142 (271)
+++||||||||+|.||+++|+.| +..+...|||+++.|.+.+...+ +|. .+......|.. ......
T Consensus 235 l~~iDAV~LTHaH~DH~G~Lp~L----~k~g~~~PIY~T~~T~~L~~~ll~d~~~~~~~~~~~~~y~~~~i~~~~~~~i~ 310 (640)
T 2xr1_A 235 LNQIDAVIVTHAHLDHQGLVPLL----FKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIP 310 (640)
T ss_dssp GGGCCEEECCSSCHHHHTTHHHH----HHTTCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEE
T ss_pred HHHCCEEEECCCCHHHHCCHHHH----HHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEE
T ss_conf 30188999888976763865999----85289988997779999999999999987664234688788999988850685
Q ss_pred CCCCCCCCCEECCCCCEEEEEEEEECCCEECCC-CCCC----CEEEECCCCCCHHHHH----HHHCCHHEEEEECCC
Q ss_conf 234433342011587489999995077621123-3468----6253032330016788----862221102530233
Q gi|254780214|r 143 IENNDVPICMKSAGGVIEAIPILQQHGRISSLG-FRFG----NVAYCTDVNAFPAESL----EKLQNLDFLIIDALK 210 (271)
Q Consensus 143 ~~~~~~~~~~~~~~~~i~i~~~~~~Hg~~~~~G-yri~----~~~Y~~Dt~~~~e~~~----~~l~~~D~lI~d~l~ 210 (271)
++.. ... .-+.+++++++.+.|....+.+ +.++ +++|++|.+.-....+ .....+|++|.+++.
T Consensus 311 l~y~---e~~-~i~~di~Vt~~~aGHslGsA~~~~~I~~g~~~IvyTGDfr~~~~~~l~~a~~~~~~~d~lIlesTy 383 (640)
T 2xr1_A 311 LDYE---EVT-DIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYEKTRLFDPAVNKFPRVETVISEATY 383 (640)
T ss_dssp CCTT---CCE-EEETTEEEEEEECSSSTTCEEEEEEETTTTEEEEECCSCCSSCCSSCCCCCCBCSCCSEEEEECTT
T ss_pred CCCC---CEE-EECCCCEEEEEECCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHEECCC
T ss_conf 5899---769-957971799972687786500578995088269973785667675558654301221222100123