Query gi|254780214|ref|YP_003064627.1| metal-dependent hydrolase protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 271 No_of_seqs 173 out of 2320 Neff 8.4 Searched_HMMs 23785 Date Mon May 23 22:54:02 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780214.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3md7_A Beta-lactamase-like; ss 100.0 0 0 386.6 23.0 268 2-270 26-293 (293) 2 3jxp_A Coenzyme PQQ synthesis 100.0 0 0 377.3 13.6 253 4-270 2-307 (321) 3 3g1p_A Protein PHNP; C-P lyase 100.0 0 0 367.1 13.3 240 1-268 1-251 (258) 4 2cbn_A Ribonuclease Z; phospho 100.0 3.9E-44 0 292.6 16.8 236 4-268 1-306 (306) 5 1zkp_A Hypothetical protein BA 100.0 2.8E-41 1.4E-45 274.9 18.1 227 2-267 22-267 (268) 6 1y44_A Ribonuclease Z; zinc-de 100.0 1.5E-40 5.6E-45 270.4 17.8 237 5-270 1-306 (320) 7 2e7y_A TRNAse Z; tRNA maturati 100.0 1.1E-29 4.4E-34 202.9 13.1 217 40-268 11-280 (280) 8 3h3e_A Uncharacterized protein 100.0 1.4E-28 6E-33 195.9 11.6 235 4-269 12-266 (267) 9 2az4_A Hypothetical protein EF 99.8 1.8E-20 7.8E-25 145.4 10.9 202 4-244 6-265 (429) 10 2p4z_A Metal-dependent hydrola 99.8 2.9E-20 1.2E-24 144.2 7.2 212 39-268 33-284 (284) 11 3bk2_A RNAse J, metal dependen 99.8 5.3E-19 2.2E-23 136.4 10.1 222 2-264 14-273 (562) 12 2wyl_A L-ascorbate-6-phosphate 99.8 1.1E-18 4.8E-23 134.3 11.2 191 40-242 46-284 (360) 13 2i7t_A Cleavage and polyadenyl 99.8 7.3E-19 3.1E-23 135.5 8.4 179 2-210 9-207 (459) 14 3bv6_A Metal-dependent hydrola 99.8 2.7E-18 1.1E-22 132.0 10.9 180 40-242 70-309 (379) 15 3kl7_A Putative metal-dependen 99.7 5.2E-17 2.2E-21 124.0 14.0 173 40-254 38-223 (235) 16 3af5_A Putative uncharacterize 99.7 3.7E-17 1.6E-21 124.9 6.7 180 2-212 186-397 (651) 17 2xr1_A Cleavage and polyadenyl 99.7 3.6E-17 1.5E-21 125.0 5.2 175 2-210 181-383 (640) 18 2i7x_A Protein CFT2; polyadeny 99.6 4E-15 1.7E-19 112.3 6.1 179 5-209 1-215 (717) 19 1vjn_A Zn-dependent hydrolase 99.5 4.7E-13 2E-17 99.4 13.8 154 4-242 12-176 (220) 20 3adr_A Putative uncharacterize 99.5 2.4E-14 1E-18 107.5 5.3 194 23-242 3-210 (261) 21 2bib_A CBPE, teichoic acid pho 99.5 6.7E-14 2.8E-18 104.7 6.8 83 2-115 3-113 (547) 22 1ztc_A Hypothetical protein TM 99.4 6.2E-13 2.6E-17 98.6 9.0 76 3-95 11-93 (221) 23 1sml_A Protein (penicillinase) 99.2 1E-10 4.3E-15 84.9 8.0 71 40-120 39-116 (269) 24 2gmn_A Metallo-beta-lactamase; 99.0 5E-10 2.1E-14 80.6 7.3 72 40-121 36-114 (274) 25 1p9e_A Methyl parathion hydrol 98.9 5E-10 2.1E-14 80.6 3.9 45 51-95 104-159 (331) 26 3esh_A Protein similar to meta 98.9 1.1E-09 4.7E-14 78.4 5.5 50 41-95 50-120 (280) 27 2xf4_A Hydroxyacylglutathione 98.9 1E-09 4.4E-14 78.6 5.2 124 52-187 23-152 (210) 28 1k07_A FEZ-1 beta-lactamase; m 98.9 1.9E-09 7.8E-14 77.1 6.3 72 40-121 26-104 (263) 29 2zo4_A Metallo-beta-lactamase 98.9 1.3E-08 5.6E-13 71.7 9.9 59 51-115 29-96 (317) 30 2q9u_A A-type flavoprotein; fl 98.9 1.4E-09 5.7E-14 77.9 4.3 117 53-187 49-172 (414) 31 1vme_A Flavoprotein; TM0755, s 98.8 2E-09 8.4E-14 76.8 4.5 122 41-187 54-181 (410) 32 1e5d_A Rubredoxin\:oxygen oxid 98.8 2.1E-09 8.7E-14 76.8 4.0 65 53-121 43-113 (402) 33 2ohh_A Type A flavoprotein FPR 98.8 3.3E-09 1.4E-13 75.5 4.1 66 52-121 43-117 (404) 34 1ycg_A Nitric oxide reductase; 98.8 2.7E-09 1.1E-13 76.1 3.5 64 53-120 44-113 (398) 35 3dha_A N-acyl homoserine lacto 98.8 1.6E-08 6.7E-13 71.2 6.8 94 4-116 7-133 (254) 36 2vw8_A PA1000, PQSE; quinolone 98.7 1.6E-08 6.8E-13 71.2 6.6 65 52-120 33-104 (303) 37 2r2d_A AGR_PTI_140P, Zn-depend 98.7 2.4E-08 1E-12 70.2 6.4 63 40-115 44-135 (276) 38 3hnn_A Putative diflavin flavo 98.6 2.1E-08 8.7E-13 70.5 4.7 169 53-240 51-232 (262) 39 3l6n_A Metallo-beta-lactamase; 98.6 2.1E-08 8.6E-13 70.6 4.1 63 52-120 39-107 (219) 40 2zwr_A Metallo-beta-lactamase 98.6 3.7E-08 1.6E-12 69.0 5.0 66 41-116 15-82 (207) 41 1a7t_A Metallo-beta-lactamase; 98.6 4.5E-08 1.9E-12 68.4 4.7 69 41-120 39-113 (232) 42 3iog_A Beta-lactamase; hydrola 98.6 1.9E-08 8.1E-13 70.7 2.7 65 51-121 30-100 (227) 43 2qed_A Hydroxyacylglutathione 98.6 7.3E-08 3.1E-12 67.1 5.4 107 52-187 28-135 (258) 44 1xm8_A Glyoxalase II; structur 98.5 1.8E-07 7.6E-12 64.7 7.2 117 40-187 13-132 (254) 45 2p18_A Glyoxalase II; metallop 98.5 1.7E-07 7.3E-12 64.8 7.0 47 52-98 50-107 (311) 46 2yz3_A Metallo-beta-lactamase; 98.5 9.5E-08 4E-12 66.4 5.4 63 52-120 77-145 (266) 47 1qh5_A Glyoxalase II, protein 98.5 3E-07 1.2E-11 63.3 7.4 55 40-97 13-68 (260) 48 2whg_A VIM-4 metallo-beta-lact 98.5 6.6E-08 2.8E-12 67.4 4.0 63 52-120 46-114 (230) 49 2gcu_A Putative hydroxyacylglu 98.5 2.5E-07 1.1E-11 63.8 6.6 106 51-187 26-143 (245) 50 1m2x_A Class B carbapenemase B 98.4 1E-07 4.4E-12 66.2 3.8 69 41-120 29-103 (223) 51 1jjt_A IMP-1 metallo beta-lact 98.4 2E-07 8.4E-12 64.4 4.2 64 52-121 41-109 (228) 52 2cfu_A SDSA1; SDS-hydrolase, l 98.3 6.5E-07 2.7E-11 61.2 5.6 68 51-118 130-204 (658) 53 2fhx_A SPM-1; metallo-beta-lac 98.2 8.9E-07 3.7E-11 60.4 3.8 62 52-119 39-106 (246) 54 1mqo_A Beta-lactamase II; alph 98.1 2.6E-06 1.1E-10 57.5 4.1 66 40-116 42-113 (227) 55 2p97_A Hypothetical protein; p 97.5 0.00014 6E-09 46.7 5.9 104 52-188 32-139 (201) 56 2az4_A Hypothetical protein EF 85.0 0.36 1.5E-05 25.5 2.1 50 215-268 380-429 (429) 57 2kkn_A Uncharacterized protein 59.5 7.9 0.00033 17.2 6.2 10 73-82 48-57 (178) 58 1ilo_A Conserved hypothetical 52.6 5.2 0.00022 18.3 1.7 11 4-14 1-11 (77) 59 2ahr_A Putative pyrroline carb 42.1 7.1 0.0003 17.5 1.1 13 2-14 1-13 (259) 60 3gtx_A Organophosphorus hydrol 39.4 16 0.00069 15.2 4.3 45 220-264 199-245 (339) 61 3cky_A 2-hydroxymethyl glutara 30.9 10 0.00044 16.5 0.5 20 1-21 1-20 (301) 62 2hl0_A Threonyl-tRNA synthetas 30.6 23 0.00096 14.3 4.2 26 220-245 61-89 (143) 63 3llm_A ATP-dependent RNA helic 29.8 23 0.00099 14.3 3.1 68 180-254 157-228 (235) 64 1s6y_A 6-phospho-beta-glucosid 28.5 17 0.00073 15.1 1.3 20 1-21 4-23 (450) 65 3hn2_A 2-dehydropantoate 2-red 27.1 15 0.00061 15.5 0.7 14 1-16 1-14 (312) 66 2rcy_A Pyrroline carboxylate r 24.8 19 0.00078 14.9 0.9 12 3-14 3-14 (262) 67 3ego_A Probable 2-dehydropanto 24.6 19 0.00079 14.9 0.9 14 1-16 1-14 (307) 68 2azn_A HTP reductase, putative 23.9 30 0.0013 13.6 2.9 21 217-237 128-148 (219) 69 1fmt_A Methionyl-tRNA FMet for 22.3 31 0.0013 13.5 1.6 19 2-21 1-19 (314) 70 3gza_A Putative alpha-L-fucosi 22.2 32 0.0014 13.4 4.5 27 217-243 293-320 (443) 71 2qyt_A 2-dehydropantoate 2-red 21.4 25 0.0011 14.1 1.0 16 1-16 4-20 (317) No 1 >3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, seattle structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} Probab=100.00 E-value=0 Score=386.55 Aligned_cols=268 Identities=51% Similarity=0.935 Sum_probs=215.4 Q ss_pred CCEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEE Q ss_conf 87259999854178965133788787777876774443069999336778971899987984156675223342059999 Q gi|254780214|r 2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQVLSIDAVLY 81 (271) Q Consensus 2 ~~~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~~i~~Id~I~i 81 (271) .+.|||||||||+|+|+|+++|+|++|++++++|+|+|+|++|+.....+++.+||||||+|+|.|+++.++++||+||| T Consensus 26 ~~~Mkit~LGTG~~~g~P~~~c~c~~C~~a~~~~~R~~~S~li~~~~~~~~~~~iLiD~G~~~~~~~~~~~~~~id~I~l 105 (293) T 3md7_A 26 RNCLRFTLLGCGSSPGVPRINGDWGKCDPKNPKNRRRRASLLVERYDAEGNNTVVVIDTGPDFRMQMIDSGVHMLDAAVY 105 (293) T ss_dssp CSEEEEEEEECBCTTCBSCTTCCCTTSCTTCGGGCBCBCEEEEEEECTTCCEEEEEECCCTTHHHHHHHHTCCCCSEEEC T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEE T ss_conf 78039999987689870569999874765578886633479998546789975899968813799986423456778998 Q ss_pred ECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEE Q ss_conf 74352422011102433317821110131120232100222210136677531001232112344333420115874899 Q gi|254780214|r 82 THPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEA 161 (271) Q Consensus 82 TH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 161 (271) ||+|+||+.||+.|+...+....+++++++..........+.+................. ................+.+ T Consensus 106 TH~H~DH~~GL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 184 (293) T 3md7_A 106 THPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPVGSSYPPILSMH-DIAPETPFSIEGAGGAIRF 184 (293) T ss_dssp SCCCHHHHTTGGGGHHHHHHHTSCEEEEECHHHHHHHHHHCGGGTSCCTTCCCCCCEEEE-ECCTTCCEEECCTTCCEEE T ss_pred ECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCHHHHHCCCCHHCCCCCCCCCCCCHHCC-CCCCCCCCEEECCCCEEEE T ss_conf 446644455754544455404555313410011012202430011455433346410000-0246653101024651788 Q ss_pred EEEEEECCCEECCCCCCCCEEEECCCCCCHHHHHHHHCCHHEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC Q ss_conf 99995077621123346862530323300167888622211025302335768875799999999997299779997688 Q gi|254780214|r 162 IPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHMH 241 (271) Q Consensus 162 ~~~~~~Hg~~~~~Gyri~~~~Y~~Dt~~~~e~~~~~l~~~D~lI~d~l~~~~~~~H~~~~ea~~~~~~~~~k~~~LtHls 241 (271) .++.+.++...+..+.....+|..+.....+.....+.+++++..+.+....+++|+|++||++++++++|||++||||| T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~t~~ea~~l~~~~~~k~liLtHis 264 (293) T 3md7_A 185 EPFSQVHGDIESLGFRIGSVVYCTDVSAFPEQSLQYIKDADVLIIGALQYRPHPSHFSLGEALEWIEKLSPKRAILTHMH 264 (293) T ss_dssp EEEEEEETTEEEEEEEETTEEEECSCSBCCGGGHHHHTTCSEEEEECCCSSCBTTBCCHHHHHHHHHHHCCSEEEEESBC T ss_pred EEEEECCCCCEEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC T ss_conf 76876247730444410211204753111102455543210011002367998998999999999997598989998999 Q ss_pred CCCCHHHHHHHCCCCCEEEEECCEEEEEC Q ss_conf 89888899986799819902044899626 Q gi|254780214|r 242 VDLDYDMVLKSTPSRVVPAFDGMQFSSPI 270 (271) Q Consensus 242 ~~~~~~~~~~~~~~~v~~A~DGm~i~l~~ 270 (271) |+++++++.++++++|++|||||+|+|++ T Consensus 265 ~~~~~~~~~~~l~~~v~~A~DGM~i~l~~ 293 (293) T 3md7_A 265 VPLDYETVMRETPHHVEPGYDGLRFEVAV 293 (293) T ss_dssp TTCCHHHHHHHSCTTEEECCTTCEEEECC T ss_pred CCCCHHHHHHHCCCCEEEEECCEEEEEEC T ss_conf 98799999965789819957895999879 No 2 >3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida KT2440} PDB: 1xto_A Probab=100.00 E-value=0 Score=377.26 Aligned_cols=253 Identities=18% Similarity=0.202 Sum_probs=196.7 Q ss_pred EEEEEEEEECCCCCEECCCCCCCCCCCCC----CCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHC-------- Q ss_conf 25999985417896513378878777787----677444306999933677897189998798415667522-------- Q gi|254780214|r 4 YYHFTILGCGASLGVPRITGDWGACDPTN----PKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLRE-------- 71 (271) Q Consensus 4 ~m~l~~LGtg~s~g~P~~~c~c~~C~~~~----~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~-------- 71 (271) .|||+|||||+|+|+|++||+|++|++|| ++++|+++|++|...+ +.+||||||||++.|+.+. T Consensus 2 ~M~i~~LGtg~~~G~P~~~C~C~~C~~ar~~~~~~~~R~~ssi~l~~~g----~~~iLiD~G~~~~~ql~~~~~~~~~~~ 77 (321) T 3jxp_A 2 MMYIQVLGSAAGGGFPQWNCNCVNCKGYRDGTLKATARTQSSIALSDDG----VHWILCNASPDIRAQLQAFAPMQPARA 77 (321) T ss_dssp CEEEEEEECBCTTTBTTTTCCSHHHHHHHHTCSCCCCBCBCEEEEESSS----SSEEEECCCTTHHHHHHTCGGGCCCSS T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEEEECC----CEEEEEECCCCHHHHHHHHHHHCCCCC T ss_conf 6999999880589704588888546032147887776432479999799----859999799759999999765483334 Q ss_pred -CCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf -3342059999743524220111024333178211101311202321002222101366775310012321123443334 Q gi|254780214|r 72 -QVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPI 150 (271) Q Consensus 72 -~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~ 150 (271) ++++||+|||||+|+||+.||++|+ ...++++|+++.+.+.+...+++.......... .....+... .. T Consensus 78 i~~~~Id~I~lTH~H~DH~~GL~~L~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~ 147 (321) T 3jxp_A 78 LRDTGINAIVLLDSQIDHTTGLLSLR-----EGCPHQVWCTDMVHQDLTTGFPLFNMLSHWNGG---LQWNRIELE--GS 147 (321) T ss_dssp SSCCSEEEEECSCCCHHHHGGGGGGG-----GGCCEEEEECHHHHHHTTTTSCHHHHHTTTTTC---EEEEECCSS--SC T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHH-----HHCEEEEEECHHHHHHHHHCCCHHHCCCCCCCC---CCEEEEECC--CC T ss_conf 67887558997077612476799996-----122023760666744444152021101334676---411355046--66 Q ss_pred CEECCCCCEEEEEEEEECCCE------------ECCCCCCC------CEEEECCCCCCHHHHHHHHCCHHEEEEECCCCC Q ss_conf 201158748999999507762------------11233468------625303233001678886222110253023357 Q gi|254780214|r 151 CMKSAGGVIEAIPILQQHGRI------------SSLGFRFG------NVAYCTDVNAFPAESLEKLQNLDFLIIDALKNG 212 (271) Q Consensus 151 ~~~~~~~~i~i~~~~~~Hg~~------------~~~Gyri~------~~~Y~~Dt~~~~e~~~~~l~~~D~lI~d~l~~~ 212 (271) ........++++|++++|+.. +++||+|. +++|++||..++++++++++++|++|+||+... T Consensus 148 ~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~g~~i~~~~~g~~~~y~~Dt~~~~~~~~~~~~~adlli~e~~~~~ 227 (321) T 3jxp_A 148 FVIDACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLVDGTLWE 227 (321) T ss_dssp EECTTSTTEEEEEEEECCCCCTTCTTTTSCCTTSEEEEEEEETTTCCEEEEESSCCCCCHHHHHHHHHCSEEEEECCCSS T ss_pred CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEEECCC T ss_conf 21024698368666533578413345624777733699998504786799978886301677754215767999850257 Q ss_pred -----------------CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC-----CHHHHHHHCCCCCEEEEECCEEEEEC Q ss_conf -----------------68875799999999997299779997688898-----88899986799819902044899626 Q gi|254780214|r 213 -----------------LHSSHFSLSESLKKIELINPKNAILTHMHVDL-----DYDMVLKSTPSRVVPAFDGMQFSSPI 270 (271) Q Consensus 213 -----------------~~~~H~~~~ea~~~~~~~~~k~~~LtHls~~~-----~~~~~~~~~~~~v~~A~DGm~i~l~~ 270 (271) .|++|++++||+++++++++||++||||||.. +.++.++..+.+|++|||||+|+|+. T Consensus 228 ~~~~~~~~~~~~~~~~~~H~~Hst~~eal~~~~~~~~k~lvLtH~sh~~p~~~~~~~~~~~~~~~gv~vA~DGm~i~L~e 307 (321) T 3jxp_A 228 DDEMQRRGVGTRTGREMGHLAQNGPGGTLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLRRGVEVAFDGMSIELLE 307 (321) T ss_dssp TTHHHHHTSCSCCCC-CCCCCSSSTTCHHHHHTTCSSSEEEEESBCTTCGGGSTTCHHHHHHHHTTEEECCTTCEEEEC- T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEECCCCCEEEEEC T ss_conf 14432135554443447878889999999999858998499996799984657497999977637949871799999932 No 3 >3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} Probab=100.00 E-value=0 Score=367.07 Aligned_cols=240 Identities=25% Similarity=0.366 Sum_probs=193.7 Q ss_pred CCCEEEEEEEEECCCCCEECCCCCCCCCCCC--CCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCCCCE Q ss_conf 9872599998541789651337887877778--76774443069999336778971899987984156675223342059 Q gi|254780214|r 1 MKDYYHFTILGCGASLGVPRITGDWGACDPT--NPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQVLSIDA 78 (271) Q Consensus 1 m~~~m~l~~LGtg~s~g~P~~~c~c~~C~~~--~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~~i~~Id~ 78 (271) |+ |||||||||+|+|+|+++|+|++|.++ .++++|+++|++|+. ++.+||||||. +.|+.+.++++||+ T Consensus 1 m~--m~i~~LGtG~~~g~P~~~c~c~~c~~~~~~~~~~R~~ss~li~~-----~~~~iLiD~G~--~~~~~~~~~~~id~ 71 (258) T 3g1p_A 1 MS--LTLTLTGTGGAQGVPAWGCECAACARARRSPQYRRQPCSGVVKF-----NDAITLIDAGL--HDLADRWSPGSFQQ 71 (258) T ss_dssp -C--EEEEEEECBCSSCBSCTTCCSHHHHHHHHCGGGCBCBSEEEEEE-----TTEEEEECCCC--TTHHHHCCTTSSCE T ss_pred CE--EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE-----CCEEEEEECCH--HHHHHCCCCCCCCE T ss_conf 90--79999934178884667887874633334877664134999998-----99789998999--99986689858879 Q ss_pred EEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC Q ss_conf 99974352422011102433317821110131120232100222210136677531001232112344333420115874 Q gi|254780214|r 79 VLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGV 158 (271) Q Consensus 79 I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (271) |||||.|.||+.||+.++ +..+++++||+++.+... .+.+ +...... ....++ .......++ T Consensus 72 I~iTH~H~DH~~GL~~l~---~~~~~~i~iy~~~~~~~~-~~~~----~~~~~~~-----~~~~~~-----~~~~~~~~~ 133 (258) T 3g1p_A 72 FLLTHYHMDHVQGLFPLR---WGVGDPIPVYGPPDEQGC-DDLF----KHPGLLD-----FSHTVE-----PFVVFDLQG 133 (258) T ss_dssp EECSCCCHHHHGGGTTTT---TCSSSCEEEEECCCSSCS-TTTT----TSCTTEE-----EEEECC-----TTCCEEETT T ss_pred EEEECCCCCCCCCHHHHH---HHCCCCCCEEECCCCCCH-HHHH----CCCCCCC-----CCCCCC-----CCEEEECCC T ss_conf 998167410244624554---422578538954411202-2442----2566543-----212356-----636885052 Q ss_pred EEEEEEEEECCCEECCCCCC----CCEEEECCCCCCHHHHHHHHC--CHHEEEEECCCC---CCCCCCCCHHHHHHHHHH Q ss_conf 89999995077621123346----862530323300167888622--211025302335---768875799999999997 Q gi|254780214|r 159 IEAIPILQQHGRISSLGFRF----GNVAYCTDVNAFPAESLEKLQ--NLDFLIIDALKN---GLHSSHFSLSESLKKIEL 229 (271) Q Consensus 159 i~i~~~~~~Hg~~~~~Gyri----~~~~Y~~Dt~~~~e~~~~~l~--~~D~lI~d~l~~---~~~~~H~~~~ea~~~~~~ 229 (271) +++++++++|+. .++||+| ++++|++|+..++++.++.++ ++|+|++||+.. ..+++|++++|+++++++ T Consensus 134 ~~i~~~~~~H~~-~~~g~~i~~~~~~i~y~gDt~~~~~~~~~~l~~~~~d~li~d~~~~~~~~~~~~H~~~~ea~~~~~~ 212 (258) T 3g1p_A 134 LQVTPLPLNHSK-LTFGYLLETAHSRVAWLSDTAGLPEKTLKFLRNNQPQVMVMDCSHPPRADAPRNHCDLNTVLALNQV 212 (258) T ss_dssp EEEEEEECCSSS-CCEEEEEECSSCEEEEECSCSSCCHHHHHHHHHTCCSEEEEECCBSSCSSCCSSSCBHHHHHHHHHH T ss_pred EEEECCCCCCCC-CCEEEEEECCCEEEEECCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 441313247898-7549999629826998486788898999996189988999548776223799999899999999997 Q ss_pred CCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEECCEEEE Q ss_conf 299779997688898888999867998199020448996 Q gi|254780214|r 230 INPKNAILTHMHVDLDYDMVLKSTPSRVVPAFDGMQFSS 268 (271) Q Consensus 230 ~~~k~~~LtHls~~~~~~~~~~~~~~~v~~A~DGm~i~l 268 (271) +++||++||||+++++++++++.++++|++|||||+|++ T Consensus 213 ~~~k~~vl~H~s~~~~~~~~~~~l~~~v~~A~DGm~i~v 251 (258) T 3g1p_A 213 IRSPRVILTHISHQFDAWLMENALPSGFEVGFDGMEIGV 251 (258) T ss_dssp HCCSCEEEESCCHHHHHHHTTCCCCTTEEECCTTEEEC- T ss_pred CCCCEEEEECCCCCCCHHHHHHHCCCCCEEECCCCEEEE T ss_conf 198989998889988989999656498489628959999 No 4 >2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Probab=100.00 E-value=3.9e-44 Score=292.56 Aligned_cols=236 Identities=18% Similarity=0.216 Sum_probs=167.9 Q ss_pred EEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCC--CCCCEEEE Q ss_conf 2599998541789651337887877778767744430699993367789718999879841566752233--42059999 Q gi|254780214|r 4 YYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQV--LSIDAVLY 81 (271) Q Consensus 4 ~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~~i--~~Id~I~i 81 (271) .|||+|||||++ +|.. .|..||++|+..... ++.+||||||++++.||.+.++ ++||+||| T Consensus 1 ~M~l~~LGtg~~--~p~~--------------~r~~s~~lv~~~~~~-~~~~iL~DcG~g~~~~l~~~~~~~~~i~~Ifi 63 (306) T 2cbn_A 1 AMNLIFLGTSAG--VPTR--------------TRNVTAILLNLQHPT-QSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFI 63 (306) T ss_dssp CCEEEEEECBSS--SCCS--------------SCCBCEEEEECCCSS-CCCEEEECCCTTHHHHHHTSCCCTTTEEEEEC T ss_pred CCEEEEECCCCC--CCCC--------------CCCCCEEEEEEECCC-CCCEEEEECCHHHHHHHHHHCCCHHHCCEEEE T ss_conf 928999776899--8999--------------996488999972688-99489999975899999981899667758998 Q ss_pred ECCCHHHHHHCCHHHH--HHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCE Q ss_conf 7435242201110243--33178211101311202321002222101366775310012321123443334201158748 Q gi|254780214|r 82 THPHADHIHGIDGLRG--YFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVI 159 (271) Q Consensus 82 TH~H~DHi~Gl~~Lr~--~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (271) ||.|+||+.||+.|.. +...+.+|+.||+|++..+.++..+....... . ..++..+.........+.+ T Consensus 64 TH~H~DH~~Gl~~ll~~~~~~~~~~~l~i~gP~~~~~~l~~~~~~~~~~~-~---------~~~~~~e~~~~~~~~~~~~ 133 (306) T 2cbn_A 64 SHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWT-D---------YPLEIVEIGAGEILDDGLR 133 (306) T ss_dssp SCCCHHHHTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHTTCCC-S---------SCEEEEECCSEEEEECSSE T ss_pred ECCCHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-C---------CCCEEEECCCCCEEECCCE T ss_conf 34668980784013310120378987656686778999999986532444-4---------4412332135411203752 Q ss_pred EEEEEEEECCCEECCCCCC------------------------------------------------------CCEEEEC Q ss_conf 9999995077621123346------------------------------------------------------8625303 Q gi|254780214|r 160 EAIPILQQHGRISSLGFRF------------------------------------------------------GNVAYCT 185 (271) Q Consensus 160 ~i~~~~~~Hg~~~~~Gyri------------------------------------------------------~~~~Y~~ 185 (271) .+.+.+..| ..++.||++ .+++|++ T Consensus 134 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~sg 212 (306) T 2cbn_A 134 KVTAYPLEH-PLECYGYRIEEHDAPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFG 212 (306) T ss_dssp EEEEEECBS-SSCCEEEEEEECCCCCCBCHHHHHHTTCCSSHHHHHHHHTCCCEETTTEECCGGGTBCCCCCCCEEEECC T ss_pred EEEEEECCC-CCCCCCCEEEECCCCCCCCHHHHHHCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECC T ss_conf 565430355-5443220122025666420767876089972145540578559996312124300234345786456526 Q ss_pred CCCCCHHHHHHHHCCHHEEEEECCCCCCC------CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHH------HHHC Q ss_conf 23300167888622211025302335768------87579999999999729977999768889888899------9867 Q gi|254780214|r 186 DVNAFPAESLEKLQNLDFLIIDALKNGLH------SSHFSLSESLKKIELINPKNAILTHMHVDLDYDMV------LKST 253 (271) Q Consensus 186 Dt~~~~e~~~~~l~~~D~lI~d~l~~~~~------~~H~~~~ea~~~~~~~~~k~~~LtHls~~~~~~~~------~~~~ 253 (271) ||.. ++++.++++++|+||+||+..... ++|+|++||++++++++||+++|||+|+..+.+++ .++. T Consensus 213 Dt~~-~~~l~~~~~~~d~LIhE~t~~~~~~~~a~~~~Hst~~~a~~~a~~~~~k~lvLtH~s~ry~~~~~~~~~~e~~~~ 291 (306) T 2cbn_A 213 DTGP-CDAALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSI 291 (306) T ss_dssp SCBS-CSTHHHHHTTCSEEEEECCBCGGGHHHHHHTTCCBHHHHHHHHHHHTCSEEEEECBCTTCCHHHHHHHHHHHHTT T ss_pred CCCC-CHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH T ss_conf 6676-645655431564577733335244515467899999999999998499989998988577964599999999987 Q ss_pred CCCCEEEEECCEEEE Q ss_conf 998199020448996 Q gi|254780214|r 254 PSRVVPAFDGMQFSS 268 (271) Q Consensus 254 ~~~v~~A~DGm~i~l 268 (271) ..|+.+|+|||+|+| T Consensus 292 ~~~~~~a~D~~~i~i 306 (306) T 2cbn_A 292 FPATELANDFTVFNV 306 (306) T ss_dssp CSCEEECCTTCEEEC T ss_pred CCCEEECCCCCEEEC T ss_conf 899399379989979 No 5 >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Probab=100.00 E-value=2.8e-41 Score=274.85 Aligned_cols=227 Identities=18% Similarity=0.183 Sum_probs=170.8 Q ss_pred CCEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHC-CCCCCCEEE Q ss_conf 8725999985417896513378878777787677444306999933677897189998798415667522-334205999 Q gi|254780214|r 2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLRE-QVLSIDAVL 80 (271) Q Consensus 2 ~~~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~-~i~~Id~I~ 80 (271) +..||||+||||++ +|.++ |..||.+|+. ++.+||||||++++.|+.+. ++++||+|| T Consensus 22 ~~~m~~~~lG~~~~--~~~~~--------------~~~S~~Li~~-----~~~~iLiD~G~g~~~~l~~~~~~~~id~I~ 80 (268) T 1zkp_A 22 SNAMKMTVVGFWGG--FPEAG--------------EATSGYLFEH-----DGFRLLVDCGSGVLAQLQKYITPSDIDAVV 80 (268) T ss_dssp SSCEEEEEEECBSS--SCCTT--------------CCBSEEEEEE-----TTEEEEECCCTTHHHHHTTTCCGGGCCEEE T ss_pred CCCCEEEEEECCCC--CCCCC--------------CCCCEEEEEE-----CCCEEEEECCHHHHHHHHHCCCHHHCCEEE T ss_conf 89778999924899--59999--------------9646799999-----992899959767999998549852497999 Q ss_pred EECCCHHHHHHCCHHHHHH------HCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC Q ss_conf 9743524220111024333------1782111013112023210022221013667753100123211234433342011 Q gi|254780214|r 81 YTHPHADHIHGIDGLRGYF------LKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKS 154 (271) Q Consensus 81 iTH~H~DHi~Gl~~Lr~~~------~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (271) |||.|.||++||+.|+... .....++++|+++.+.+.+.+... . +......+ ...... T Consensus 81 iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~----~-------~~~~~~~~-----~~~~~~ 144 (268) T 1zkp_A 81 LSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFDENGFHSLTH----E-------PHTKGIPY-----NPEETL 144 (268) T ss_dssp CSCCCHHHHTTHHHHHHHHHHHHHHHCCCCCEEEEECSSSHHHHHTTCB----T-------TTEEEEEC-----CTTSCE T ss_pred EECCCHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHH----H-------CCCCEEEC-----CCCCEE T ss_conf 9279603333448887654202333356774458833667889987654----2-------25533770-----687559 Q ss_pred CCCCEEEEEEEEECCCEECCCCCCC----CEEEECCCCCCHHHHHHHHCCHHEEEEECCCCC----CCCCCCCHHHHHHH Q ss_conf 5874899999950776211233468----625303233001678886222110253023357----68875799999999 Q gi|254780214|r 155 AGGVIEAIPILQQHGRISSLGFRFG----NVAYCTDVNAFPAESLEKLQNLDFLIIDALKNG----LHSSHFSLSESLKK 226 (271) Q Consensus 155 ~~~~i~i~~~~~~Hg~~~~~Gyri~----~~~Y~~Dt~~~~e~~~~~l~~~D~lI~d~l~~~----~~~~H~~~~ea~~~ 226 (271) ..++++++++++.|+ .+++||+|. +++|++|+.. .++..++++++|+||+||.... ...+|++++|++++ T Consensus 145 ~ig~~~v~~~~~~H~-~~~~g~~i~~~~~~i~ysgDt~~-~~~~~~~~~~~Dlli~e~~~~~~~~~~~~~H~~~~ea~~l 222 (268) T 1zkp_A 145 QIGPFSISFLKTVHP-VTCFAMRITAGNDIVVYSADSSY-IPEFIPFTKDADLFICECNMYAHQEAAKAGHMNSTEVASI 222 (268) T ss_dssp EETTEEEEEEECCSS-SCCEEEEEEETTEEEEECCSCCC-CTTHHHHHTTCSEEEEECCBCTTSCCGGGTCCBHHHHHHH T ss_pred EEEEEEEEEECCCCC-CCCCEEEEECCCCEEEECCCCCC-CCHHHHHHCCCCEEEEECCCCCCHHCCCCCCCCHHHHHHH T ss_conf 841289974037777-87413477427977998888998-8146665335768999778873000266668999999999 Q ss_pred HHHCCCCEEEEECCCCCCCHHH----HHHHCCCCCEEEEECCEEE Q ss_conf 9972997799976888988889----9986799819902044899 Q gi|254780214|r 227 IELINPKNAILTHMHVDLDYDM----VLKSTPSRVVPAFDGMQFS 267 (271) Q Consensus 227 ~~~~~~k~~~LtHls~~~~~~~----~~~~~~~~v~~A~DGm~i~ 267 (271) ++++++|+++|||+++..+.++ +++.++.+|.+|+|||+++ T Consensus 223 ~~~~~~k~lvl~H~~~~~~~~~~~~~~~~~~~~~V~~A~DG~~~d 267 (268) T 1zkp_A 223 AKDANVKELLLTHLPHTGNPADLVTEAKQIFSGHITLAHSGYVWN 267 (268) T ss_dssp HHHTTCSEEEEESBCSSSCTHHHHHHHHTTCCSEEEECCTTCEEE T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEE T ss_conf 998197989998979879999999999986699899933998863 No 6 >1y44_A Ribonuclease Z; zinc-dependent metal hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Probab=100.00 E-value=1.5e-40 Score=270.41 Aligned_cols=237 Identities=19% Similarity=0.231 Sum_probs=158.5 Q ss_pred EEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCC--CCCCEEEEE Q ss_conf 599998541789651337887877778767744430699993367789718999879841566752233--420599997 Q gi|254780214|r 5 YHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQV--LSIDAVLYT 82 (271) Q Consensus 5 m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~~i--~~Id~I~iT 82 (271) |||+|||||++ +|.+ .|..+|.++.... .++.+||||||+|++.||++.++ ++||+|||| T Consensus 1 Mkv~~LGtg~~--~p~~--------------~r~~s~~~v~~~~--~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~I~iT 62 (320) T 1y44_A 1 MELLFLGTGAG--IPAK--------------ARNVTSVALKLLE--ERRSVWLFDCGEATQHQMLHTTIKPRKIEKIFIT 62 (320) T ss_dssp CEEEEEECBSS--SCCS--------------SCCBCEEEEEETT--TTSEEEEECCCTTHHHHHTTSSCCGGGEEEEECS T ss_pred CEEEEEEECCC--CCCC--------------CCCCCEEEEEEEE--CCCCEEEEECCHHHHHHHHHCCCCHHHCCEEEEC T ss_conf 98999977899--7999--------------9976889999980--6994899949779999999839996676689972 Q ss_pred CCCHHHHHHCCHHHH--HHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEE Q ss_conf 435242201110243--331782111013112023210022221013667753100123211234433342011587489 Q gi|254780214|r 83 HPHADHIHGIDGLRG--YFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIE 160 (271) Q Consensus 83 H~H~DHi~Gl~~Lr~--~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 160 (271) |.|+||+.|++.+.. +......++++|+|+.+.+.+...+.+........... .+............. T Consensus 63 H~H~DH~~Gl~~~~~~~~~~~~~~~~~iy~p~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~ 132 (320) T 1y44_A 63 HMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKTHLTYPLAI----------QEIEEGIVFEDDQFI 132 (320) T ss_dssp BCCGGGTTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHTTCCCSSCEEE----------EECCSEEEEECSSEE T ss_pred CCCHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCE----------EECCCCCEEECCCEE T ss_conf 4456651671355555553167765423477017889987665320255665312----------552677401046325 Q ss_pred EEEEEEECCC---------------------------------EECCCCC--------------------CCCEEEECCC Q ss_conf 9999950776---------------------------------2112334--------------------6862530323 Q gi|254780214|r 161 AIPILQQHGR---------------------------------ISSLGFR--------------------FGNVAYCTDV 187 (271) Q Consensus 161 i~~~~~~Hg~---------------------------------~~~~Gyr--------------------i~~~~Y~~Dt 187 (271) +.++++.|.. ....|+. ..++.|++|+ T Consensus 133 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 212 (320) T 1y44_A 133 VTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRSVVFSGDT 212 (320) T ss_dssp EEEEECBSSSSBEEEEEEECCBCCCC--------------------------------------CCCCBCCCEEEECCSC T ss_pred EEEEECCCCCCCCCCCCEECCCCCCCCHHHHHHCCCCCCCEEEECCCCCEEEEEEEEEECCCCEEECCCCCCCEECCCCC T ss_conf 76541013555334330102567752254576508997521532156547998401374120002002478510015744 Q ss_pred CCCHHHHHHHHCCHHEEEEECCCCCC------CCCCCCHHHHHHHHHHCCCCEEEEECCCCCCC---HHHHHH---HCCC Q ss_conf 30016788862221102530233576------88757999999999972997799976888988---889998---6799 Q gi|254780214|r 188 NAFPAESLEKLQNLDFLIIDALKNGL------HSSHFSLSESLKKIELINPKNAILTHMHVDLD---YDMVLK---STPS 255 (271) Q Consensus 188 ~~~~e~~~~~l~~~D~lI~d~l~~~~------~~~H~~~~ea~~~~~~~~~k~~~LtHls~~~~---~~~~~~---~~~~ 255 (271) . +.+.+..+++++|+|++|++.... .++|++++||++++++++||+++|||+|++.+ .+++.+ +... T Consensus 213 ~-~~~~~~~~~~~~d~li~e~~~~~~~~~~~~~~~H~t~~ea~~~a~~~~~k~lvltH~s~~~~~~~~~~~~~e~~~~~~ 291 (320) T 1y44_A 213 R-VSDKLKELARDCDVMVHEATFAKEDRKLAYDYYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVDVFP 291 (320) T ss_dssp B-CCHHHHHHTTTCSEEEEECCBCTTCHHHHHHTTCCBHHHHHHHHHHHTCSEEEEECBCTTSCTTHHHHHHHHHHHHCS T ss_pred C-CCHHHHHHHCCCCHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCC T ss_conf 2-237788751475033221010003454212579999999999999859998999897846688419999999998789 Q ss_pred CCEEEEECCEEEEEC Q ss_conf 819902044899626 Q gi|254780214|r 256 RVVPAFDGMQFSSPI 270 (271) Q Consensus 256 ~v~~A~DGm~i~l~~ 270 (271) |+++|||||+|+||- T Consensus 292 ~v~~a~Dg~~i~i~~ 306 (320) T 1y44_A 292 NSVAAYDFLEVNVPR 306 (320) T ss_dssp SEEECCTTCEEECCC T ss_pred CEEECCCCCEEEECC T ss_conf 979865897899899 No 7 >2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Probab=99.96 E-value=1.1e-29 Score=202.90 Aligned_cols=217 Identities=18% Similarity=0.210 Sum_probs=139.8 Q ss_pred CEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHCCHHHH----HHHCCCCEEEEEECCEEE Q ss_conf 0699993367789718999879841566752233420599997435242201110243----331782111013112023 Q gi|254780214|r 40 SSLKISRVSERGSNTTVIVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRG----YFLKQKRPIDVYAAPDCM 115 (271) Q Consensus 40 ~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~----~~~~~~~~i~vy~~~~~~ 115 (271) .|.++... +.+||||||++++.|| +..+.+||+|||||.|+||++||+.|.. ....+..++.+++|+.+. T Consensus 11 ~~t~~~~~-----~~~iLiD~G~g~~~~l-~~~~~~i~~IfiTH~H~DHi~gl~~l~~~~~~~~~~~~~~l~~~~p~~~~ 84 (280) T 2e7y_A 11 FSTWIYYS-----PERILFDAGEGVSTTL-GSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNR 84 (280) T ss_dssp TEEEEEEG-----GGTEEEEECTTHHHHH-GGGGGGCCEEECSCCCHHHHTTHHHHHHHHHHHSGGGCCCEEEEEETTCH T ss_pred CEEEEEEC-----CCEEEEECCHHHHHHH-CCCCCCCCEEEEECCCHHHHCCHHHHHHHHHHHCCCCCCCEEEECCHHHH T ss_conf 37999989-----9879998974499985-55522387899917863564679999998743103788761450544689 Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEECCC-EECCCCCC---------------- Q ss_conf 2100222210136677531001232112344333420115874899999950776-21123346---------------- Q gi|254780214|r 116 KHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGR-ISSLGFRF---------------- 178 (271) Q Consensus 116 ~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~Hg~-~~~~Gyri---------------- 178 (271) .. .+....+.......... .....+...............+++.++++.|.. ..+++|++ T Consensus 85 ~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (280) T 2e7y_A 85 AV-EEYTEFIKRANPDLRFS--FNVHPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDS 161 (280) T ss_dssp HH-HHHHHHHHHHCGGGTTT--EEEEEECTTCCEECCCSSCSCEEEEEEECCSCSSSCCEEEEEEEEEEEECGGGTTCCH T ss_pred HH-HHHHHHHHHCCCCCCCC--CCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCHHHCCCCC T ss_conf 99-99998753003444554--2101123554034203666633799886213567664046650245432122235774 Q ss_pred ---------------------CCEEEECCCCCCHHHHHHHHCCHHEEEEECCCCC----CCCCCCCHHHHHHHHHHCCCC Q ss_conf ---------------------8625303233001678886222110253023357----688757999999999972997 Q gi|254780214|r 179 ---------------------GNVAYCTDVNAFPAESLEKLQNLDFLIIDALKNG----LHSSHFSLSESLKKIELINPK 233 (271) Q Consensus 179 ---------------------~~~~Y~~Dt~~~~e~~~~~l~~~D~lI~d~l~~~----~~~~H~~~~ea~~~~~~~~~k 233 (271) .+++|++|+.. ++. ++++++|+||+||.... ..++|+|++|+++++++++|| T Consensus 162 ~~i~~~~~~~g~~~~~~~~~~~~~~~~gD~~~-~~~--~~~~~~d~li~E~~~~~~~~~~~~~Hst~~~~~~~a~~~~vk 238 (280) T 2e7y_A 162 KEISRLVKEKGRDFVTEEYHKKVLTISGDSLA-LDP--EEIRGTELLIHECTFLDARDRRYKNHAAIDEVMESVKAAGVK 238 (280) T ss_dssp HHHHHHHHHHCTGGGEEEEEEEEEEECCSCSS-CCH--HHHTTCSCEEEECCBC--------CCCBHHHHHHHHHHHTCC T ss_pred CCHHHHHHCCCCCEEEECCCCCCCCCCCCCCC-CCH--HHHCCCCEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHCCCC T ss_conf 10000111056303420125761233687777-886--782788789997464334554116998999999999976999 Q ss_pred EEEEECCCCCCC------HHHHHHHCCCC-CEEEEECCEEEE Q ss_conf 799976888988------88999867998-199020448996 Q gi|254780214|r 234 NAILTHMHVDLD------YDMVLKSTPSR-VVPAFDGMQFSS 268 (271) Q Consensus 234 ~~~LtHls~~~~------~~~~~~~~~~~-v~~A~DGm~i~l 268 (271) +++|||+|++.. ..++++++|+. +.++.||..+++ T Consensus 239 ~lil~H~s~ry~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 280 (280) T 2e7y_A 239 KVILYHISTRYIRQLKSVIKKYREEMPDVEILYMDPRKVFEM 280 (280) T ss_dssp EEEEESCCGGGHHHHHHHHHHHHHHCTTSEEEECCTTSCEEC T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEC T ss_conf 999992680238669999999998789988998899986859 No 8 >3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Probab=99.96 E-value=1.4e-28 Score=195.87 Aligned_cols=235 Identities=14% Similarity=0.097 Sum_probs=136.1 Q ss_pred EEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCC--HHHHHHHCCCCCCCEEEE Q ss_conf 259999854178965133788787777876774443069999336778971899987984--156675223342059999 Q gi|254780214|r 4 YYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPD--FYMQVLREQVLSIDAVLY 81 (271) Q Consensus 4 ~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d--~r~ql~~~~i~~Id~I~i 81 (271) .||||+|+.+.+. +.+. .+-..|++|+ +||||||++ +..++.+.++..+|+||| T Consensus 12 ~m~i~~l~~~~~~--~~~~-------------~e~G~s~~ie---------~iL~D~G~~~~~~~n~~~lgId~~daV~l 67 (267) T 3h3e_A 12 HMRIHVLCDDSSQ--NGFE-------------SEHGFSVLVD---------SVLFDTGKSDVFLKNARKLGIDLPKDVLI 67 (267) T ss_dssp CEEEEEEECSCCC--TTCC-------------CCSSCEEEET---------TEEECCCSSSHHHHHHHHTTCCCCSEEEC T ss_pred CEEEEEEECCCCC--CCCC-------------CCCEEEEEEC---------CEEEECCCCHHHHHHHHHCCCCHHHCEEE T ss_conf 2799999779999--8751-------------4622554445---------28997999979999999849984684898 Q ss_pred ECCCHHHHHHCCHHHHHH--HCCCCEEEEEECCEEEEEEC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC Q ss_conf 743524220111024333--17821110131120232100-----22221013667753100123211234433342011 Q gi|254780214|r 82 THPHADHIHGIDGLRGYF--LKQKRPIDVYAAPDCMKHLF-----ESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKS 154 (271) Q Consensus 82 TH~H~DHi~Gl~~Lr~~~--~~~~~~i~vy~~~~~~~~l~-----~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (271) ||.|+||++||++|+... .......++|.+........ ..+.+..... ... .........+.+..... T Consensus 68 TH~H~DH~gGl~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~i~~~~~~ 142 (267) T 3h3e_A 68 SHGHYDHAGGLLYLSGKRVWLRKEALDQKYSGERYAGADWNEVLYYNTGKFVIER---ITE--IGKNMFLLGPANLRGKV 142 (267) T ss_dssp SCSCHHHHGGGGGCCSCEEEEEGGGGSEEEETTEECCCCHHHHHHHSEEEEECSS---EEE--EETTEEEECSCCCTTCC T ss_pred ECCCHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC---CCC--CCCCCEECCCCCCCCCC T ss_conf 1455311078899987655306565654343432247641466763235300246---411--14784231651345523 Q ss_pred CCCCEEEE-----EEEEECCCEECCCCCCC-CEEEECCCCC-----CHHHHHHHHCCHHEEEEECCCCCCCCCCCCHHHH Q ss_conf 58748999-----99950776211233468-6253032330-----0167888622211025302335768875799999 Q gi|254780214|r 155 AGGVIEAI-----PILQQHGRISSLGFRFG-NVAYCTDVNA-----FPAESLEKLQNLDFLIIDALKNGLHSSHFSLSES 223 (271) Q Consensus 155 ~~~~i~i~-----~~~~~Hg~~~~~Gyri~-~~~Y~~Dt~~-----~~e~~~~~l~~~D~lI~d~l~~~~~~~H~~~~ea 223 (271) ......+. .....+ ....+++..+ ..++.+++.. +.++ ...+.+.+++.+.+....++.+|.+++++ T Consensus 143 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~g~~h~~~~~h~~~~~~ 220 (267) T 3h3e_A 143 PTGDFFVERNGERRKDLFE-DEQTLVVRTKEGLVVITGCSHRGIDNILLD-IAETFNERIKMVVGGFHLLKSSDDEIEKI 220 (267) T ss_dssp CCSCEEEESSSCEEECCCT-TCCEEEEEETTEEEEEESCCTTCHHHHHHH-HHTTCSSCEEEEEEECCCTTSCHHHHHHH T ss_pred CCCCCEEECCCCEECCCCC-CEEEEEEEECCCEEEEEECCCCCHHHHHHH-HHHHCCCCEEEEECCCCCCCCCHHHHHHH T ss_conf 2687235438816424644-416899960683699851126523403999-99972996489953675799987789999 Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEECCEEEEE Q ss_conf 9999972997799976888988889998679981990204489962 Q gi|254780214|r 224 LKKIELINPKNAILTHMHVDLDYDMVLKSTPSRVVPAFDGMQFSSP 269 (271) Q Consensus 224 ~~~~~~~~~k~~~LtHls~~~~~~~~~~~~~~~v~~A~DGm~i~l~ 269 (271) ++++++++||++++||++++.++++++++++.+|.+|||||+|++- T Consensus 221 ~~~l~~~~~k~i~l~H~t~~~~~~~l~~~~~~~v~~a~dG~~iei~ 266 (267) T 3h3e_A 221 VKAFNELGVETVVPCHCTGERAVDIFKREFLGKIMDCYAGLKLEVS 266 (267) T ss_dssp HHHHHHTTCCEEEEETTSCHHHHHHHHHHCSSEECCCCTTCEEEEC T ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEECCCEEEEEC T ss_conf 9999858998899989997599999997788986991388299828 No 9 >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP: d.157.1.10 Probab=99.84 E-value=1.8e-20 Score=145.45 Aligned_cols=202 Identities=14% Similarity=0.189 Sum_probs=115.2 Q ss_pred EEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHH----------H----- Q ss_conf 2599998541789651337887877778767744430699993367789718999879841566----------7----- Q gi|254780214|r 4 YYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQ----------V----- 68 (271) Q Consensus 4 ~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~q----------l----- 68 (271) ..+|||||-+ -.+|+ ++++|+. ++.+||||||..++.. + T Consensus 6 ~~~i~f~GG~-----~eiGg----------------~~~~i~~-----~~~~illD~G~~~~~~~~~~~~~~~~~~~~~~ 59 (429) T 2az4_A 6 KTTVTFHSGI-----LTIGG----------------TVIEVAY-----KDAHIFFDFGTEFRPELDLPDDHIETLINNRL 59 (429) T ss_dssp CEEEEEEECT-----TSSSC----------------CEEEEEE-----TTEEEEECCCCCCCTTCCCSCCCHHHHHHTTS T ss_pred CEEEEEECCC-----CCCCC----------------CEEEEEE-----CCEEEEEECCCCCCCCCCCCCCCHHCCCCCCC T ss_conf 4699992799-----85588----------------3899999-----99089994799977655675411000111234 Q ss_pred ------------------HHCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCC---CCCCC Q ss_conf ------------------522334205999974352422011102433317821110131120232100222---21013 Q gi|254780214|r 69 ------------------LREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESF---RYCFK 127 (271) Q Consensus 69 ------------------~~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~---~y~f~ 127 (271) +..+..++|||||||+|.||++||+.|. ..+|||+++.+...+.... .+... T Consensus 60 ~p~~~~~~~~~~~~~~~~~~~~~~~i~ai~iTH~H~DH~g~l~~l~-------~~~piy~~~~t~~l~~~~~~~~~~~~~ 132 (429) T 2az4_A 60 VPELKDLYDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLD-------PAVPLYTLKETKMILNSLNRKGDFLIP 132 (429) T ss_dssp SCCCSSCBCGGGCCCCCSSCCCCCSEEEEECSCSCHHHHTTGGGBC-------TTSCEEEEHHHHHHHHHHTTTSCSSCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHCCHHHHH-------HCCCEEECHHHHHHHHHHHHHHCCCCC T ss_conf 6654333355421110012246566658998987172658525676-------169765279999999998764000123 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEECCCEECCCCCC----CCEEEECCCC---CCHHHH---HHH Q ss_conf 667753100123211234433342011587489999995077621123346----8625303233---001678---886 Q gi|254780214|r 128 ALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRF----GNVAYCTDVN---AFPAES---LEK 197 (271) Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~Hg~~~~~Gyri----~~~~Y~~Dt~---~~~e~~---~~~ 197 (271) .. .. ......+.........+..++++++++++.|.-..++||+| ++++|++|++ ...+.. .+. T Consensus 133 ~~----~~--~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~Hsi~gs~~~~i~~~~~~i~ytGD~~~~~~~~~~~~~~~~~ 206 (429) T 2az4_A 133 SP----FE--EKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHGHNREETLAFCEK 206 (429) T ss_dssp CT----TS--CTTCCCCCEEECTTCEEEETTEEEEEEECCCSSTTCEEEEEEETTEEEEECCSCCSSSTTHHHHHHHHHH T ss_pred CH----HH--HCCCCCEEEEECCCCEEEECCEEEEEEECCCCCCCCEEEEEECCCCEEEECCCEEECCCCCCCHHHHHHH T ss_conf 40----22--2155431599589996997777999985667888754899824674588546513158876411556666 Q ss_pred HCCHHEEEEECCCCC-------CCCC-CCCHHHHHHHHHHC---CC-CEEEEECCCCCC Q ss_conf 222110253023357-------6887-57999999999972---99-779997688898 Q gi|254780214|r 198 LQNLDFLIIDALKNG-------LHSS-HFSLSESLKKIELI---NP-KNAILTHMHVDL 244 (271) Q Consensus 198 l~~~D~lI~d~l~~~-------~~~~-H~~~~ea~~~~~~~---~~-k~~~LtHls~~~ 244 (271) .+++|+||+|++... ..+. ..+-++.++.+.+. ++ +++++.-++.++ T Consensus 207 ~~~~d~Li~E~T~~~~~~~~~~~~~~~~~se~~v~~~i~~~~~~~~~~~Vii~~~a~~~ 265 (429) T 2az4_A 207 AKHTELLMMEGVSISFPEREPDPAQIAVVSEEDLVQHLVRLELENPNRQITFNGYPANV 265 (429) T ss_dssp HTTCSEEEEECCGGGSCCCCCCTTBCCCCSHHHHHHHHHHHHHTCSSSCEEEEECTTCH T ss_pred HCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHH T ss_conf 21402330102210246656775556554289999999999985666615423113019 No 10 >2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; 2.10A {Thermoanaerobacter tengcongensis MB4} Probab=99.81 E-value=2.9e-20 Score=144.19 Aligned_cols=212 Identities=17% Similarity=0.128 Sum_probs=106.1 Q ss_pred CCEEEEEECCCCCCCEEEEEECCCC--HHHHHHHCCC--CCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEE Q ss_conf 3069999336778971899987984--1566752233--42059999743524220111024333178211101311202 Q gi|254780214|r 39 RSSLKISRVSERGSNTTVIVDTGPD--FYMQVLREQV--LSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDC 114 (271) Q Consensus 39 ~~s~~i~~~~~~~~~~~iLiD~G~d--~r~ql~~~~i--~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~ 114 (271) ..|+||+. ++.+||||||++ +..+|.+.++ ++||+||+||.|.||++||++++... ...++|+++.+ T Consensus 33 G~S~LIe~-----~~~~iLID~G~~~~~~~~l~~~gi~~~~Id~I~iTH~H~DHigGL~~ll~~~----~~~~~~~~~~~ 103 (284) T 2p4z_A 33 GLSLLLKK-----GNKEIVVDTGQSENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERN----PEVKIYTHKEI 103 (284) T ss_dssp SCEEEEEE-----TTEEEEECCCSSTHHHHHHHHTTCCGGGCCEEECCCSCHHHHTTHHHHHHHC----TTCEEEEEGGG T ss_pred EEEEEEEE-----CCEEEEEECCCCHHHHHHHHHCCCCHHHCCEEEECCCCHHHCCCCHHHHHHC----CCCCCCCCHHH T ss_conf 78999998-----9968999079997999999984999789989997464354317766788645----56654447656 Q ss_pred EEEEC--C---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEECC-------------------- Q ss_conf 32100--2---2221013667753100123211234433342011587489999995077-------------------- Q gi|254780214|r 115 MKHLF--E---SFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHG-------------------- 169 (271) Q Consensus 115 ~~~l~--~---~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~Hg-------------------- 169 (271) ..... . .+.++... ...+..... .................+.+++..+. T Consensus 104 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (284) T 2p4z_A 104 LNKKYAMRKGGQFEEIGFD--LSFYEKYKN----NFVLIDKDAEIEEGFYVITNTDITYDNEFTTKNFFVEKEGKRIPDK 177 (284) T ss_dssp GSCEEEECSSSCEEECSCC--HHHHHHHGG----GEEEESSCEEEETTEEEECSCCCCSCCHHHHTTEEEEETTEEEECC T ss_pred HHHHHCCCCCCCCCCCCCC--HHHHHHCCC----CCEEECCCCCCCCCCEEECCCCEEECCCCCCEEEEECCCCCEECCC T ss_conf 5342101236641113533--333332145----4045247730148834744645453245453035651577374253 Q ss_pred CEECCCCCC----CCEEEECCCCCCHHHHHH----HHCCHHEEEEECCCCCCCCCCCCH---HHHHHHHHHCCCCEEEEE Q ss_conf 621123346----862530323300167888----622211025302335768875799---999999997299779997 Q gi|254780214|r 170 RISSLGFRF----GNVAYCTDVNAFPAESLE----KLQNLDFLIIDALKNGLHSSHFSL---SESLKKIELINPKNAILT 238 (271) Q Consensus 170 ~~~~~Gyri----~~~~Y~~Dt~~~~e~~~~----~l~~~D~lI~d~l~~~~~~~H~~~---~ea~~~~~~~~~k~~~Lt 238 (271) .....++.+ ....+++|.........+ ...+..++.+.+ ..|..|.+. .++++..++.++|+++++ T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~g---~~h~~~~~~~~~~~sl~~L~~~~~k~i~~~ 254 (284) T 2p4z_A 178 FLDEVFVVVKEEDGINVVTGCSHAGILNILETARNRFGVSYIKSLIG---GFHLRGMEEEKVKDIARKIEEYGVKKVLTG 254 (284) T ss_dssp CTTCCEEEEEETTEEEEEESSCTTCHHHHHHHHHHHHTCSCBSEEEE---CCCCTTCCHHHHHHHHHHHHHTTBCCEEEC T ss_pred CCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC---CCCCCCCCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 36625899981787078961166247988764575348987789816---755789999999999999970899899998 Q ss_pred CCCCCCCHHHHHHHCCCCCEEEEECCEEEE Q ss_conf 688898888999867998199020448996 Q gi|254780214|r 239 HMHVDLDYDMVLKSTPSRVVPAFDGMQFSS 268 (271) Q Consensus 239 Hls~~~~~~~~~~~~~~~v~~A~DGm~i~l 268 (271) |++....++.+++.++++|+.++|||+|.+ T Consensus 255 H~tg~~~~~~~~~~l~d~i~~~~~G~~i~~ 284 (284) T 2p4z_A 255 HCTGIDEYGFLKSVLKDKISYLTTSSSIVV 284 (284) T ss_dssp GGGCHHHHHHHHHHHGGGEEECCTTCEEEC T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCEEEC T ss_conf 999749999999865367899589989979 No 11 >3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* Probab=99.79 E-value=5.3e-19 Score=136.38 Aligned_cols=222 Identities=18% Similarity=0.171 Sum_probs=125.5 Q ss_pred CCEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHH-------------HHH Q ss_conf 8725999985417896513378878777787677444306999933677897189998798415-------------667 Q gi|254780214|r 2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFY-------------MQV 68 (271) Q Consensus 2 ~~~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r-------------~ql 68 (271) ++..+++.||-+.- +| +++.+++. ++..||||||-.+. ... T Consensus 14 ~~~i~i~pLGG~~E-----IG----------------~n~~~~e~-----~~~~iliD~G~~f~~~~~~gid~iiPd~~~ 67 (562) T 3bk2_A 14 QDHVEIIPLGGMGE-----IG----------------KNITVFRF-----RDEIFVLDGGLAFPEEGMPGVDLLIPRVDY 67 (562) T ss_dssp CCCEEEEEEESBSB-----SS----------------CCEEEEEE-----TTEEEEECCCCBCCCTTSTTCCEEEECCHH T ss_pred CCEEEEEECCCCCH-----HH----------------HCEEEEEE-----CCEEEEEECCCCCCCCCCCCCCEEECCCHH T ss_conf 88289996688890-----45----------------16799999-----995999958999897568897589369689 Q ss_pred HHCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 52233420599997435242201110243331782111013112023210022221013667753100123211234433 Q gi|254780214|r 69 LREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDV 148 (271) Q Consensus 69 ~~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~ 148 (271) +..+.++|+||||||+|.||+++||.|.+.....+.++|||+++.|.+.++.++... .... .......+. T Consensus 68 l~~~~~~i~ai~lTHaH~DH~Galp~Ll~~~~~~~~~~PIY~T~~T~~Ll~~kl~e~--~~~~----~~~~~~~i~---- 137 (562) T 3bk2_A 68 LIEHRHKIKAWVLTHGHEDHIGGLPFLLPMIFGKESPVPIYGARLTLGLLRGKLEEF--GLRP----GAFNLKEIS---- 137 (562) T ss_dssp HHHTGGGEEEEECCCCCHHHHTTHHHHHHHHHCSCCCSEEEEEHHHHHHHHHHHHHT--TCCS----TTSEEEEEC---- T ss_pred HHHCCCCCEEEEECCCCHHHHCCHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHC--CCCC----CCCCEEEEC---- T ss_conf 873766725999799855653772878875214568858887999999999999972--9985----555314736---- Q ss_pred CCCEECC-CCCEEEEEEEEECCCEECCCCCC----CCEEEECCCCCC-------H--HHHHHHH--CCHHEEEEECCCCC Q ss_conf 3420115-87489999995077621123346----862530323300-------1--6788862--22110253023357 Q gi|254780214|r 149 PICMKSA-GGVIEAIPILQQHGRISSLGFRF----GNVAYCTDVNAF-------P--AESLEKL--QNLDFLIIDALKNG 212 (271) Q Consensus 149 ~~~~~~~-~~~i~i~~~~~~Hg~~~~~Gyri----~~~~Y~~Dt~~~-------~--e~~~~~l--~~~D~lI~d~l~~~ 212 (271) ...... +..++++++++.|.-..++||.| ++++|++|.+.- + ...+..+ .++++|+.|++... T Consensus 138 -~~~~~~~g~~f~v~~~~v~hsipga~~~~i~t~~g~IlyTGDfr~~~~~~~~~~~d~~~~~~~~~~~vl~l~~~st~~~ 216 (562) T 3bk2_A 138 -PDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRTPIGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVLLLIADATNAE 216 (562) T ss_dssp -TTCEEEETTTEEEEEEECCCSSSSCEEEEEEETTEEEEECCSCCCCSSCTTSCCCCCHHHHHHHHHCCSEEEEECTTTT T ss_pred -CCCEEEEEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCC T ss_conf -9965998211899988536777764699998299789998255577777655656889985227778539976878889 Q ss_pred CCCCCC----CHHH-HHHHHHHCCCCEEEEECCCCCCCHH----HHHHHCCCCCEEEEECC Q ss_conf 688757----9999-9999997299779997688898888----99986799819902044 Q gi|254780214|r 213 LHSSHF----SLSE-SLKKIELINPKNAILTHMHVDLDYD----MVLKSTPSRVVPAFDGM 264 (271) Q Consensus 213 ~~~~H~----~~~e-a~~~~~~~~~k~~~LtHls~~~~~~----~~~~~~~~~v~~A~DGm 264 (271) ++.+. .+.+ ..+..++ ...|++++-++.++.-- ++++. .+..++++|. T Consensus 217 -~~~~~~~E~~~~~~i~~~~~~-~~grvii~~fasni~Riq~i~~~a~~--~~r~v~~~g~ 273 (562) T 3bk2_A 217 -RPGYTPSEMEIAKELDRVIGR-APGRVFVTTFASHIHRIQSVIWAAEK--YGRKVAMEGR 273 (562) T ss_dssp -CCSCCCCHHHHHHHHHHHHHH-CSSCEEEECCTTCHHHHHHHHHHHHH--TTCEEEEECH T ss_pred -CCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHH--HCCEEEECCC T ss_conf -899997889999999999985-79989999704058899999999998--4988985051 No 12 >2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Probab=99.78 E-value=1.1e-18 Score=134.31 Aligned_cols=191 Identities=18% Similarity=0.145 Sum_probs=105.8 Q ss_pred CEEEEEECCCCCCCEEEEEEC--CC--------CH--HHHHHH--------------------CCCCCCCEEEEECCCHH Q ss_conf 069999336778971899987--98--------41--566752--------------------23342059999743524 Q gi|254780214|r 40 SSLKISRVSERGSNTTVIVDT--GP--------DF--YMQVLR--------------------EQVLSIDAVLYTHPHAD 87 (271) Q Consensus 40 ~s~~i~~~~~~~~~~~iLiD~--G~--------d~--r~ql~~--------------------~~i~~Id~I~iTH~H~D 87 (271) ++++|+.. ++.+||||. |. .+ ..|+.| +.+++||+||+||.|.| T Consensus 46 s~~~i~~~----~g~~IliDP~ls~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~R~~p~~idp~~L~~IDaVLiTH~H~D 121 (360) T 2wyl_A 46 TGIWLKSE----GGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQIDAVLATHDHND 121 (360) T ss_dssp TEEEEECT----TCCEEEESCCCCCCCCCCCC----------------CCCCCCBCSCCCCCGGGCCCCSEEECSBSCTT T ss_pred CEEEEECC----CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCHH T ss_conf 58999906----99199986887887776666555532111123554345775555789889688888889997999602 Q ss_pred HHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEE Q ss_conf 22011102433317821110131120232100222210136677531001232112344333420115874899999950 Q gi|254780214|r 88 HIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQ 167 (271) Q Consensus 88 Hi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 167 (271) |+. ...++.........+++|+|.++.+.++... +.. ............+................+...+.. T Consensus 122 Hld-~~~l~~~~~~~~~~~~~~gP~~~~~~l~~~g---~~~---~~i~~~~~g~~~~v~~~~i~~~~~~~~~~~~~~p~~ 194 (360) T 2wyl_A 122 HID-VNVAAAVMQNCADDVPFIGPKTCVDLWIGWG---VPK---ERCIVVKPGDVVKVKDIEIHALDAFDRTALITLPAD 194 (360) T ss_dssp TCC-HHHHHHHHHHSCTTCCEEECHHHHHHHHHHT---CCG---GGEEECCTTCEEEETTEEEEEEECCCC--------- T ss_pred HCC-CHHHHHHHHCCCCCCEEECCHHHHHHHHHCC---CCH---HHEEEECCCCEEEEECCEEEEEEEEEEEEEEECCCC T ss_conf 178-0999999854767743865889999998669---965---515760578657740213577631455556642664 Q ss_pred C---------CCEECCCCCCC----CEEEECCCCCCHHHHHHHHC--CHHEEEEECCCC-CCCCCCCCHHHHHHHHHHCC Q ss_conf 7---------76211233468----62530323300167888622--211025302335-76887579999999999729 Q gi|254780214|r 168 H---------GRISSLGFRFG----NVAYCTDVNAFPAESLEKLQ--NLDFLIIDALKN-GLHSSHFSLSESLKKIELIN 231 (271) Q Consensus 168 H---------g~~~~~Gyri~----~~~Y~~Dt~~~~e~~~~~l~--~~D~lI~d~l~~-~~~~~H~~~~ea~~~~~~~~ 231 (271) | ....++||+++ +++|++||.+. ++..+.++ ++|++++..... .....||+.+||++++++++ T Consensus 195 ~~~~~~~~~~~~~~~~g~~ie~~g~tIy~sGDT~~~-~~~~~~~~~~~iDvall~ig~~~~~~~~hmt~~eA~~~a~~l~ 273 (360) T 2wyl_A 195 QKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYS-NYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALN 273 (360) T ss_dssp ---------CCTTTBEEEEEEETTEEEEECTTCCCC-TTHHHHHHHSCCCEEEEEBCCCCTTCCCSBCHHHHHHHHHHHT T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCC-HHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCC T ss_conf 446665577787740489997199189992698866-8899985348985899658888888888889999999999729 Q ss_pred CCEEEEECCCC Q ss_conf 97799976888 Q gi|254780214|r 232 PKNAILTHMHV 242 (271) Q Consensus 232 ~k~~~LtHls~ 242 (271) ||+++++|... T Consensus 274 ~K~vIp~H~d~ 284 (360) T 2wyl_A 274 AKVVIPFHHDI 284 (360) T ss_dssp CSEEEEESTTT T ss_pred CCEEEEECCCC T ss_conf 99999965667 No 13 >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Probab=99.77 E-value=7.3e-19 Score=135.53 Aligned_cols=179 Identities=15% Similarity=0.098 Sum_probs=102.5 Q ss_pred CCEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCC--CHHH-----HHHHCCCC Q ss_conf 8725999985417896513378878777787677444306999933677897189998798--4156-----67522334 Q gi|254780214|r 2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGP--DFYM-----QVLREQVL 74 (271) Q Consensus 2 ~~~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~--d~r~-----ql~~~~i~ 74 (271) ++.|++++||-+.. +| +++.+|+. ++.+||||||. +... .+.....+ T Consensus 9 ~~~~~i~~LGG~~e-----iG----------------~sc~lv~~-----~~~~illDcG~~~~~~~~~~~p~~~~~~~~ 62 (459) T 2i7t_A 9 SDQLLIRPLGAGQE-----VG----------------RSCIILEF-----KGRKIMLDCGIHPGLEGMDALPYIDLIDPA 62 (459) T ss_dssp CEEEEEEEEESSSS-----SS----------------SCEEEEEE-----TTEEEEECCCCCTTSCGGGGSCCGGGSCGG T ss_pred CCEEEEEECCCCCC-----CC----------------CCEEEEEE-----CCEEEEEECCCCCCCCCCCCCCCCCCCCCC T ss_conf 98499998268986-----45----------------68999998-----992999958899886520026776667822 Q ss_pred CCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCC----CC-CCCCCC Q ss_conf 2059999743524220111024333178211101311202321002222101366775310012321----12-344333 Q gi|254780214|r 75 SIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPI----VI-ENNDVP 149 (271) Q Consensus 75 ~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~----~~-~~~~~~ 149 (271) +||+|||||+|.||++|||.|.. ..+.+.|||+++.|.+.+.................+..... .+ .....+ T Consensus 63 ~idai~lTH~H~DH~g~Lp~l~~---~~~~~~piy~t~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 139 (459) T 2i7t_A 63 EIDLLLISHFHLDHCGALPWFLQ---KTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETIN 139 (459) T ss_dssp GCCEEECCCSSHHHHTTHHHHHH---HSSCCSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEEC T ss_pred CCCEEEECCCHHHHHCCHHHHHH---HCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCEEEEC T ss_conf 29999989785887692799998---648999888315279999988898775410343235677999997762458707 Q ss_pred CCEECCCCCEEEEEEEEECCCEECCCCCCC----CEEEECCCCCCHHHHHHH----HCCHHEEEEECCC Q ss_conf 420115874899999950776211233468----625303233001678886----2221102530233 Q gi|254780214|r 150 ICMKSAGGVIEAIPILQQHGRISSLGFRFG----NVAYCTDVNAFPAESLEK----LQNLDFLIIDALK 210 (271) Q Consensus 150 ~~~~~~~~~i~i~~~~~~Hg~~~~~Gyri~----~~~Y~~Dt~~~~e~~~~~----l~~~D~lI~d~l~ 210 (271) .......+.++++++...|. ..+.+|+|+ +++|++|.+.-++..+.. ..++|+|+.|++. T Consensus 140 ~~~~~~~~~~~i~~~~agH~-~g~~~~~i~~~~~~i~ytGD~~~~~~~~l~~~~~~~~~~D~Li~est~ 207 (459) T 2i7t_A 140 FHEVKEVAGIKFWCYHAGHV-LGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTY 207 (459) T ss_dssp TTCCEEETTEEEEEEECCSS-TTCEEEEEEETTEEEEECCSCCCC-----CCCCCCSSCCSEEEEECTT T ss_pred CCCEEEECCEEEEEEECCCC-CCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCC T ss_conf 99568608759999844776-785799999899988855886777864445655677665589995677 No 14 >3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural genomics, PSI-2; 1.80A {Vibrio cholerae o1 biovar eltor str} Probab=99.77 E-value=2.7e-18 Score=131.99 Aligned_cols=180 Identities=16% Similarity=0.157 Sum_probs=112.7 Q ss_pred CEEEEEECCCCCCCEEEEEEC--CCCH----------HHHHHH--------------------CCCCCCCEEEEECCCHH Q ss_conf 069999336778971899987--9841----------566752--------------------23342059999743524 Q gi|254780214|r 40 SSLKISRVSERGSNTTVIVDT--GPDF----------YMQVLR--------------------EQVLSIDAVLYTHPHAD 87 (271) Q Consensus 40 ~s~~i~~~~~~~~~~~iLiD~--G~d~----------r~ql~~--------------------~~i~~Id~I~iTH~H~D 87 (271) +|++|+.. ++.+||||. |.+. +.|+.| +.+++||+||+||.|.| T Consensus 70 ag~~i~~~----g~t~iliDp~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~p~~R~~p~~idp~~L~~IDaVLITH~H~D 145 (379) T 3bv6_A 70 TGIWLKSA----GNTNLSIDFWCGTGKKTQKNRLMNTQHQMMRMGGVEALQPNLRTSIFPLDPFAIKEIDAVLASHDHAD 145 (379) T ss_dssp TEEEEEET----TCCEEEESCCCCCCCCCSSCCBCCTTCHHHHHHCCCBCCCCCBCSCCCSCGGGCCCCSEEECSBCSGG T ss_pred CEEEEEEC----CCCEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCC T ss_conf 68999978----97389989957888766554445642101102454446875455789889689799888998999711 Q ss_pred HHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEE Q ss_conf 22011102433317821110131120232100222210136677531001232112344333420115874899999950 Q gi|254780214|r 88 HIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQ 167 (271) Q Consensus 88 Hi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 167 (271) |+ +...++......+..+++++|.++.+.+.+.. .+ ... ..+...+.....++++++.++.. T Consensus 146 Hl-D~~tl~~i~~~~~~~~~~igP~~~~~~l~~~g-----------vp---~~~---ii~l~~gd~~~i~~i~I~~~pa~ 207 (379) T 3bv6_A 146 HI-DVNVAAAVLQNCGEHVKFIGPQACVDLWLGWG-----------VP---QER---CIVAKVGDVLEIGDVKIRVLDSF 207 (379) T ss_dssp GC-CHHHHHHHHHHSCTTCEEEECHHHHHHHHHHT-----------CC---GGG---EEECCTTCEEEETTEEEEEEECC T ss_pred CC-CHHHHHHHHHCCCCCEEEECCHHHHHHHHHCC-----------CC---HHH---EEEECCCCEEEECCEEEEEEEEE T ss_conf 17-96999999850797459983789999998759-----------96---676---68814787289877799999435 Q ss_pred CCCE---------------------ECCCCCCC----CEEEECCCCCCHHHHHHHHC--CHHEEEEECCCC-CCCCCCCC Q ss_conf 7762---------------------11233468----62530323300167888622--211025302335-76887579 Q gi|254780214|r 168 HGRI---------------------SSLGFRFG----NVAYCTDVNAFPAESLEKLQ--NLDFLIIDALKN-GLHSSHFS 219 (271) Q Consensus 168 Hg~~---------------------~~~Gyri~----~~~Y~~Dt~~~~e~~~~~l~--~~D~lI~d~l~~-~~~~~H~~ 219 (271) |+.. .+.||+|+ ++.|+|||.+. +...+..+ +.|+.++..-.+ .....||+ T Consensus 208 H~~~~~~~p~~~~~~~~~~~~~~~~~~~gylIe~~g~~Iy~sGDT~~~-~~~~~ig~~~~iDvall~iG~~~~~~~~hmt 286 (379) T 3bv6_A 208 DRTALVTLPKGVSSYDKAILDGMDERAVNYLIETSGGSVYHSGDSHYS-NYYAKHGNDYQIDVALLSYGENPRGVTDKMT 286 (379) T ss_dssp CHHHHTCCCTTSCSSCGGGGGCHHHHBEEEEEEETTEEEEECTTCCCC-TTHHHHHHHSCCSEEEEEBCCCCTTCCCSBC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCC-HHHHHHHHHCCCCEEEECCCCCCCCCCCCCC T ss_conf 365100147764446766666887653168897199389996799964-7899988647998999788888877766889 Q ss_pred HHHHHHHHHHCCCCEEEEECCCC Q ss_conf 99999999972997799976888 Q gi|254780214|r 220 LSESLKKIELINPKNAILTHMHV 242 (271) Q Consensus 220 ~~ea~~~~~~~~~k~~~LtHls~ 242 (271) .+||+++++.+++|.++.+|... T Consensus 287 ~~eA~~aa~~l~~k~vIP~H~d~ 309 (379) T 3bv6_A 287 SSDVLRAAESLDCQVVVPFHHDI 309 (379) T ss_dssp HHHHHHHHHHHTCSEEEEESTTS T ss_pred HHHHHHHHHHCCCCEEEEECCCC T ss_conf 99999999970999999966345 No 15 >3kl7_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Probab=99.74 E-value=5.2e-17 Score=124.00 Aligned_cols=173 Identities=17% Similarity=0.233 Sum_probs=110.3 Q ss_pred CEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEEC Q ss_conf 06999933677897189998798415667522334205999974352422011102433317821110131120232100 Q gi|254780214|r 40 SSLKISRVSERGSNTTVIVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLF 119 (271) Q Consensus 40 ~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~ 119 (271) +|++|+. ++.+||||.-.. ......+.++|+||+||.|.||+. ...++.. .+...+|++++.+.+.+. T Consensus 38 as~lie~-----~g~~ILiDP~~~---~~~~~~~p~iD~VLiTH~H~DH~~-~~~l~~~---~~~~~~vi~~~~~~~~l~ 105 (235) T 3kl7_A 38 GSLMLTY-----DNHSIQVDPVSE---YADYTTFPKADIILITHEHGDHLD-PKAIQAV---EKSDTEIIANENSQKKLG 105 (235) T ss_dssp TEEEEEE-----TTEEEEESCCTT---TCCTTSSCCCSEEEECCSSTTTCC-HHHHHHH---CCTTCEEEECHHHHHHHT T ss_pred CEEEEEE-----CCEEEEECCCCC---CCCHHCCCCCCEEEECCCCCCCCC-CHHHHHH---HCCCCEEEECHHHHHHHH T ss_conf 5999998-----999999889999---886200898889997998701267-2201246---426966981589987751 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEECCCE---------ECCCCCCC----CEEEECC Q ss_conf 2222101366775310012321123443334201158748999999507762---------11233468----6253032 Q gi|254780214|r 120 ESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRI---------SSLGFRFG----NVAYCTD 186 (271) Q Consensus 120 ~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~Hg~~---------~~~Gyri~----~~~Y~~D 186 (271) +.. .... .........++++.++..|... ...||+++ ++.|+|| T Consensus 106 ~~~-------------------~~~~----~~~~~~~~~~~I~~~p~~h~~~~~~~~~~~~~~~gyvie~~g~~i~~~GD 162 (235) T 3kl7_A 106 KGK-------------------VLKN----GDTDTSISYMKIEAVPAYNTTPGRDKYHPRHRDNGYILTFDGLRVYIAGD 162 (235) T ss_dssp CSE-------------------ECCT----TCEECCSTTCEEEEEECCCCSTTGGGTSCTTTSEEEEEEETTEEEEECCS T ss_pred HCC-------------------CCCC----CCCEEEECCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCEEEEEECC T ss_conf 064-------------------2025----77327755720678973415787667678753377899979979999458 Q ss_pred CCCCHHHHHHHHCCHHEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCC Q ss_conf 33001678886222110253023357688757999999999972997799976888988889998679 Q gi|254780214|r 187 VNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHMHVDLDYDMVLKSTP 254 (271) Q Consensus 187 t~~~~e~~~~~l~~~D~lI~d~l~~~~~~~H~~~~ea~~~~~~~~~k~~~LtHls~~~~~~~~~~~~~ 254 (271) |..+++ ++.++++|++++..- .+.||+.+||+++++.++||+++.+|.... +..++++.+. T Consensus 163 t~~~~e--~~~~~~iDv~~lpig----~~~~m~~~~A~~~~~~l~pk~viP~H~~~~-~~~~~~~~~~ 223 (235) T 3kl7_A 163 TEDIPE--MKDLKDIDIAFLPVN----QPYTMTVSQAAKAARMFSPKILYPYHYGDT-KIGELKDALK 223 (235) T ss_dssp CCSCGG--GGGCCSCSEEEEECC----TTTSCCHHHHHHHHHHHCCSEEEEESCTTC-CTTHHHHHTT T ss_pred CCCHHH--HHHCCCCCEEEECCC----CCCCCCHHHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHH T ss_conf 677577--751269879997679----977579999999999729999999568998-8899999998 No 16 >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Probab=99.68 E-value=3.7e-17 Score=124.89 Aligned_cols=180 Identities=21% Similarity=0.180 Sum_probs=99.2 Q ss_pred CCEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHH--HH---------- Q ss_conf 872599998541789651337887877778767744430699993367789718999879841566--75---------- Q gi|254780214|r 2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQ--VL---------- 69 (271) Q Consensus 2 ~~~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~q--l~---------- 69 (271) ++.||+|+||... .+| +++.+|+. ++.+||||||-.+... -. T Consensus 186 ~~~vrit~LGG~~-----EIG----------------rs~~lv~~-----~~~~ILlDcG~~~~~~~~~~~~~p~~~~p~ 239 (651) T 3af5_A 186 SRWIRITGLGGFR-----EVG----------------RSALLVQT-----DESFVLVDFGVNVAMLNDPYKAFPHFDAPE 239 (651) T ss_dssp CSCEEEEEEECSS-----SSS----------------CCEEEEEE-----SSCEEEECCCCCGGGTTCHHHHSCCTTCHH T ss_pred CCCEEEEEECCCC-----CCC----------------CCEEEEEE-----CCCEEEEECCCCCCCCCCCCCCCCCCCCCC T ss_conf 9827999936888-----624----------------66799996-----796899989988565667311367767765 Q ss_pred ---HCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCC----- Q ss_conf ---223342059999743524220111024333178211101311202321002222101366775310012321----- Q gi|254780214|r 70 ---REQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPI----- 141 (271) Q Consensus 70 ---~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~----- 141 (271) -...++||||||||+|.||+++||.|- .......|||+++.|.+.+.....-..+........+..... T Consensus 240 ~~~l~~~~~idAVlITHaH~DHiG~LP~L~---~~g~~~~PIY~T~~T~~L~~~~~~d~~~i~~~~~~~~~y~~~di~~~ 316 (651) T 3af5_A 240 FQYVLREGLLDAIIITHAHLDHCGMLPYLF---RYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEV 316 (651) T ss_dssp HHHHHHTTCCCEEECSCSSHHHHTTHHHHH---HTTCCCSCEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHH T ss_pred CCCCCCCCCCCEEEECCCCHHHHCCHHHHH---HHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH T ss_conf 212367565568997889878868688999---73788887766789999999999999998761167777899999999 Q ss_pred --CCCCCCCCCCEECCCCCEEEEEEEEECCCEECCCCCC------CCEEEECCCCCCHHHHHH----HHCCHHEEEEECC Q ss_conf --1234433342011587489999995077621123346------862530323300167888----6222110253023 Q gi|254780214|r 142 --VIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRF------GNVAYCTDVNAFPAESLE----KLQNLDFLIIDAL 209 (271) Q Consensus 142 --~~~~~~~~~~~~~~~~~i~i~~~~~~Hg~~~~~Gyri------~~~~Y~~Dt~~~~e~~~~----~l~~~D~lI~d~l 209 (271) .+...+....... +.+++++++...|.. .+..+.+ ++++|++|.+.-+...++ ....+|.|++|++ T Consensus 317 ~~~~~~l~yge~~~i-~pd~~it~~~aGH~l-Gsa~~~i~i~~~~~~IvyTGDfk~~~~~ll~~a~~~~~rvd~Li~EsT 394 (651) T 3af5_A 317 IKHTITLDYGEVRDI-SPDIRLTLHNAGHIL-GSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAKFPRLETLVMEST 394 (651) T ss_dssp HHTEEECCTTCCEEE-ETTEEEEEEECSSST-TCEEEEEEETTTTTCEEECCSCCCSCCSSCCCCCCBCSSCSEEEEECT T ss_pred HHCCEEECCCCEEEE-CCCEEEEECCCCCCC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCEEEEEE T ss_conf 854199579984980-798799865689887-030899995688668997778788877566876545123040023320 Q ss_pred CCC Q ss_conf 357 Q gi|254780214|r 210 KNG 212 (271) Q Consensus 210 ~~~ 212 (271) .-. T Consensus 395 yg~ 397 (651) T 3af5_A 395 YGG 397 (651) T ss_dssp TCS T ss_pred CCC T ss_conf 267 No 17 >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Probab=99.67 E-value=3.6e-17 Score=125.01 Aligned_cols=175 Identities=21% Similarity=0.235 Sum_probs=99.8 Q ss_pred CCEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHH--H----H---HHCC Q ss_conf 87259999854178965133788787777876774443069999336778971899987984156--6----7---5223 Q gi|254780214|r 2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYM--Q----V---LREQ 72 (271) Q Consensus 2 ~~~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~--q----l---~~~~ 72 (271) ++..|+|+||-..- + .+++.+|+. ++.+||+|||-.+.. + . .-.. T Consensus 181 ~~~irit~LGG~~E-----I----------------Grsc~lv~~-----~~~~ILlDcG~~~~~~~~~~~~~~~p~~~~ 234 (640) T 2xr1_A 181 DQWVRVTALGGCKE-----V----------------GRSCFLLST-----PESRILIDCGVNVGSDENMTPYLYVPEVFP 234 (640) T ss_dssp CCCCEEEEEECSSS-----S----------------BCCEEEEEC-----SSCEEEECCCCBCSSCSSCCCCTTSTTTCS T ss_pred CCEEEEEEECCCCC-----C----------------CCCEEEEEE-----CCCEEEEECCCCCCCCCCCCCCCCCCCCCC T ss_conf 98089999478886-----1----------------527799996-----896999988888785233574435577687 Q ss_pred CCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCC-CCC---CCCCCCCCCCC------CCCCCC Q ss_conf 34205999974352422011102433317821110131120232100222-210---13667753100------123211 Q gi|254780214|r 73 VLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESF-RYC---FKALDDRTYPP------IVNPIV 142 (271) Q Consensus 73 i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~-~y~---f~~~~~~~~~~------~~~~~~ 142 (271) +++||||||||+|.||+++|+.| +..+...|||+++.|.+.+...+ +|. .+......|.. ...... T Consensus 235 l~~iDAV~LTHaH~DH~G~Lp~L----~k~g~~~PIY~T~~T~~L~~~ll~d~~~~~~~~~~~~~y~~~~i~~~~~~~i~ 310 (640) T 2xr1_A 235 LNQIDAVIVTHAHLDHQGLVPLL----FKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIP 310 (640) T ss_dssp GGGCCEEECCSSCHHHHTTHHHH----HHTTCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEE T ss_pred HHHCCEEEECCCCHHHHCCHHHH----HHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEE T ss_conf 30188999888976763865999----85289988997779999999999999987664234688788999988850685 Q ss_pred CCCCCCCCCEECCCCCEEEEEEEEECCCEECCC-CCCC----CEEEECCCCCCHHHHH----HHHCCHHEEEEECCC Q ss_conf 234433342011587489999995077621123-3468----6253032330016788----862221102530233 Q gi|254780214|r 143 IENNDVPICMKSAGGVIEAIPILQQHGRISSLG-FRFG----NVAYCTDVNAFPAESL----EKLQNLDFLIIDALK 210 (271) Q Consensus 143 ~~~~~~~~~~~~~~~~i~i~~~~~~Hg~~~~~G-yri~----~~~Y~~Dt~~~~e~~~----~~l~~~D~lI~d~l~ 210 (271) ++.. ... .-+.+++++++.+.|....+.+ +.++ +++|++|.+.-....+ .....+|++|.+++. T Consensus 311 l~y~---e~~-~i~~di~Vt~~~aGHslGsA~~~~~I~~g~~~IvyTGDfr~~~~~~l~~a~~~~~~~d~lIlesTy 383 (640) T 2xr1_A 311 LDYE---EVT-DIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYEKTRLFDPAVNKFPRVETVISEATY 383 (640) T ss_dssp CCTT---CCE-EEETTEEEEEEECSSSTTCEEEEEEETTTTEEEEECCSCCSSCCSSCCCCCCBCSCCSEEEEECTT T ss_pred CCCC---CEE-EECCCCEEEEEECCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHEECCC T ss_conf 5899---769-957971799972687786500578995088269973785667675558654301221222100123 No 18 >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Probab=99.55 E-value=4e-15 Score=112.30 Aligned_cols=179 Identities=13% Similarity=0.070 Sum_probs=95.3 Q ss_pred EEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCC----HHHHH---HHCCCCCCC Q ss_conf 59999854178965133788787777876774443069999336778971899987984----15667---522334205 Q gi|254780214|r 5 YHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPD----FYMQV---LREQVLSID 77 (271) Q Consensus 5 m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d----~r~ql---~~~~i~~Id 77 (271) |..+|..|.+..|.+ ++.+|+. ++.+||+|||-+ ...+. +..-+.+|| T Consensus 1 ~~~~~~~~~~g~~~~--------------------~c~lL~~-----d~~~ILlDcG~~~~~~~~~~~~~~~~~~~~~ID 55 (717) T 2i7x_A 1 MTYKYNCCDDGSGTT--------------------VGSVVRF-----DNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEID 55 (717) T ss_dssp CCEEEEECCSSSSSC--------------------CCEEEEE-----TTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCC T ss_pred CEEEEEEECCCCCCC--------------------EEEEEEE-----CCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCC T ss_conf 917999814899730--------------------3899998-----997999989988776774450022112656587 Q ss_pred EEEEECCCHHHHHHCCHHHH-HHHCCCCEEEEEECCEEEEEECCCCCCCCC--CCCCCCCCCCCCCC-------CCCCCC Q ss_conf 99997435242201110243-331782111013112023210022221013--66775310012321-------123443 Q gi|254780214|r 78 AVLYTHPHADHIHGIDGLRG-YFLKQKRPIDVYAAPDCMKHLFESFRYCFK--ALDDRTYPPIVNPI-------VIENND 147 (271) Q Consensus 78 ~I~iTH~H~DHi~Gl~~Lr~-~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~--~~~~~~~~~~~~~~-------~~~~~~ 147 (271) +|||||+|.||+++||.|-. +....+...|||+++.|.+..+-...-.+. ........+..... .+.... T Consensus 56 aVllSHah~DH~GaLP~L~~~~~~~~g~~~pIYaT~pt~~L~~~~l~D~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~l~ 135 (717) T 2i7x_A 56 VIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLK 135 (717) T ss_dssp EEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEEC T ss_pred EEEECCCCHHHHCCHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEEC T ss_conf 89977898677546689998513236988889966899999999999999975311655566789999999985048947 Q ss_pred CCCCEEC--CCCCEEEEEEEEECCCEECCCCCC----CCEEEECCCCCCHHHHH-------------HHHCCHHEEEEEC Q ss_conf 3342011--587489999995077621123346----86253032330016788-------------8622211025302 Q gi|254780214|r 148 VPICMKS--AGGVIEAIPILQQHGRISSLGFRF----GNVAYCTDVNAFPAESL-------------EKLQNLDFLIIDA 208 (271) Q Consensus 148 ~~~~~~~--~~~~i~i~~~~~~Hg~~~~~Gyri----~~~~Y~~Dt~~~~e~~~-------------~~l~~~D~lI~d~ 208 (271) +...... ...+++++++..-|- ..+..+.| ++++|++|.+...+..+ +.+...++||.++ T Consensus 136 Y~q~~~l~~~~~gl~it~~~AGH~-LGsa~~~I~~~~~~IvytgD~n~~~~~~L~ga~~~~~~~~~~~~l~~~~~li~~t 214 (717) T 2i7x_A 136 YSQLVDLRSRYDGLTLLAYNAGVC-PGGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTL 214 (717) T ss_dssp TTCCEEETTTTTTEEEEEEECSSS-TTCEEEEEECSSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECC T ss_pred CCCEEECCCCCCCEEEEEEECCCC-CCCEEEEEEECCEEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEC T ss_conf 998598037888579999655632-3426999982995999963678888730047533455788643356787899807 Q ss_pred C Q ss_conf 3 Q gi|254780214|r 209 L 209 (271) Q Consensus 209 l 209 (271) . T Consensus 215 ~ 215 (717) T 2i7x_A 215 D 215 (717) T ss_dssp S T ss_pred C T ss_conf 7 No 19 >1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; structural genomics, JCSG, PSI, protein structure initiative; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Probab=99.51 E-value=4.7e-13 Score=99.38 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=98.6 Q ss_pred EEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEEC Q ss_conf 25999985417896513378878777787677444306999933677897189998798415667522334205999974 Q gi|254780214|r 4 YYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQVLSIDAVLYTH 83 (271) Q Consensus 4 ~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~~i~~Id~I~iTH 83 (271) -||||+||. +|++|+. ++.+||||.-.... -.....-++|+|++|| T Consensus 12 ~MkIt~lGh---------------------------s~~lIe~-----~g~~ILiDP~~~~~--~~~~~~~~~D~VliSH 57 (220) T 1vjn_A 12 HMKITWFGH---------------------------ACFALEM-----EGKTIVTDPFDESV--GYPIPNVTADVVTESH 57 (220) T ss_dssp CEEEEEEET---------------------------TEEEEEE-----TTEEEEESCCC-------CCCCCBCSEEECSS T ss_pred EEEEEEEEC---------------------------CEEEEEE-----CCEEEEECCCCCCC--CCCCCCCCCCEEEECC T ss_conf 189999703---------------------------1999998-----99999989998877--8987778788999668 Q ss_pred CCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEE Q ss_conf 35242201110243331782111013112023210022221013667753100123211234433342011587489999 Q gi|254780214|r 84 PHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIP 163 (271) Q Consensus 84 ~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~ 163 (271) .|.||... . .. .+.+ .+ . .. .... ..++++++. T Consensus 58 ~H~DH~~~--~----~~-~~~~-~v------~---~~----------------------------~g~~--~~~~~~I~~ 90 (220) T 1vjn_A 58 QHFDHNAH--H----LV-KGNF-RV------I---DR----------------------------PGAY--TVNGVKIKG 90 (220) T ss_dssp CC---CGG--G----GC-BSSC-EE------E---CS----------------------------SEEE--EETTEEEEE T ss_pred CCCCCCCH--H----HC-CCCE-EE------E---CC----------------------------CCEE--EECCEEECC T ss_conf 78676751--2----31-4626-99------6---04----------------------------5659--979822124 Q ss_pred EEEECCC------EECCCCCCC----CEEEECCCCCCHH-HHHHHHCCHHEEEEECCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 9950776------211233468----6253032330016-7888622211025302335768875799999999997299 Q gi|254780214|r 164 ILQQHGR------ISSLGFRFG----NVAYCTDVNAFPA-ESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINP 232 (271) Q Consensus 164 ~~~~Hg~------~~~~Gyri~----~~~Y~~Dt~~~~e-~~~~~l~~~D~lI~d~l~~~~~~~H~~~~ea~~~~~~~~~ 232 (271) ++..|.+ ..++||.++ ++.|++|+...+. +.+..+.++|++++.. + .+.||+.+||+++++.++| T Consensus 91 v~a~H~~~~~~~~g~~~~~~ie~~g~~I~~~GDt~~~~~~~~~~~~~~~Dva~lPi---g-g~~~m~~~eA~~~~~~l~p 166 (220) T 1vjn_A 91 VETFHDPSHGRERGKNIVFVFEGEGIKVCHLGDLGHVLTPAQVEEIGEIDVLLVPV---G-GTYTIGPKEAKEVADLLNA 166 (220) T ss_dssp EEEEEC-------CEEEEEEEEETTEEEEECTTCCSCCCHHHHHHHCCCSEEEEEC---C-SSSSCCHHHHHHHHHHTTC T ss_pred CCCEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHCCCCEEEEEC---C-CCCCCCHHHHHHHHHHHCC T ss_conf 32065188885478757999984992999968988898999998528976899944---9-9653899999999997099 Q ss_pred CEEEEECCCC Q ss_conf 7799976888 Q gi|254780214|r 233 KNAILTHMHV 242 (271) Q Consensus 233 k~~~LtHls~ 242 (271) |.++-+|... T Consensus 167 k~vIP~H~~t 176 (220) T 1vjn_A 167 KVIIPMHYKT 176 (220) T ss_dssp SEEEEESCCC T ss_pred CEEEEEECCC T ss_conf 9999970599 No 20 >3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Probab=99.48 E-value=2.4e-14 Score=107.47 Aligned_cols=194 Identities=17% Similarity=0.088 Sum_probs=103.0 Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCC Q ss_conf 88787777876774443069999336778971899987984156675223342059999743524220111024333178 Q gi|254780214|r 23 GDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQ 102 (271) Q Consensus 23 c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~ 102 (271) |.|--|-+..|.+.+..+++++-. +++..+|||||++...+.+ ..+++||+||+||.|+||++|++.|+. T Consensus 3 ~~~~~~i~~~p~~~~~~~n~~li~----~~~~~~lID~G~~~~~~~~-~~~~~i~~VilTH~H~DH~gg~~~l~~----- 72 (261) T 3adr_A 3 CRGLHSIPAGPVEFPEIATVYVMC----GEKLTVMIDAGVSNSIADF-SFLDKLDYIVLTHLHIDHIGLLPELLQ----- 72 (261) T ss_dssp CCEEEEEECSCTTCGGGSEEEEEE----CSSCEEEECCCCTTCCCCC-TTCSCCCEEECSCCSGGGTTTHHHHHH----- T ss_pred CCCEEEEECCCCCCCCEEEEEEEE----ECCEEEEECCCCCHHHHHH-HCCCCCCEEEECCCCCCCCCCHHHHHH----- T ss_conf 785489207986768768999999----4995899879998299986-240678999959898644287667654----- Q ss_pred CCEEEEEECCEEEEEECCCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEE-C Q ss_conf 211101311202321002222-------------10136677531001232112344333420115874899999950-7 Q gi|254780214|r 103 KRPIDVYAAPDCMKHLFESFR-------------YCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQ-H 168 (271) Q Consensus 103 ~~~i~vy~~~~~~~~l~~~~~-------------y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-H 168 (271) ..+.+||+++...+.+..... ..+....... .+......+ .......+..++.++..+..+ | T Consensus 73 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~g~~~~lg~~~~~~~~~pGH 148 (261) T 3adr_A 73 VYKAKVLVKSGFKKYLTSEDGLKKLNESAEKVLGDLYYVYGGLE-KKLDQDKVI---EVEGNEEFDLGGYRMRLIYTPGH 148 (261) T ss_dssp HSCCEEEEETTCTHHHHSHHHHHHHHHHHHHHHTHHHHHHCCCC-SCCCGGGEE---EECSCCEEECSSSEEEEEECTTS T ss_pred CCCCCEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCEE---EECCCEEEEECCCEEEEEECCCC T ss_conf 35674333787999862501245677888876400001014665-555655248---83363389506610047757988 Q ss_pred CCEECCCCCCCCEEEECCCCCCHHHHHHHHCCHHEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 76211233468625303233001678886222110253023357688757999999999972997799976888 Q gi|254780214|r 169 GRISSLGFRFGNVAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHMHV 242 (271) Q Consensus 169 g~~~~~Gyri~~~~Y~~Dt~~~~e~~~~~l~~~D~lI~d~l~~~~~~~H~~~~ea~~~~~~~~~k~~~LtHls~ 242 (271) ...+++|.+++++|++|+.... -.+. +..... +..+...+.++++..++++++.++.+|-.. T Consensus 149 -t~~~~~~~~~~vlftGD~~~~~--------~~~~-~~~~~~--~~~~~~~~~~sl~~l~~l~~~~i~pgHg~~ 210 (261) T 3adr_A 149 -ARHHMSVLVDDFLFTGDSAGAY--------FNGV-VIPTTP--PVIDYKMYMESLKRQIELKPKVVGFAHGGL 210 (261) T ss_dssp -CTTCEEEEETTEEEEETSSCEE--------ETTE-EECCCC--SCCCHHHHHHHHHHHHHTCCSEEEETTTEE T ss_pred -CCCCEEEEECCEEEECCCCCCC--------CCCC-CCCCCC--CCCCHHHHHHHHHHHHCCCCCEEEECCCCC T ss_conf -8876899989999989846867--------7886-326899--998999999999999779989999299986 No 21 >2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding protein; PCE, hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Probab=99.47 E-value=6.7e-14 Score=104.68 Aligned_cols=83 Identities=22% Similarity=0.314 Sum_probs=55.7 Q ss_pred CCEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCC------------------ Q ss_conf 87259999854178965133788787777876774443069999336778971899987984------------------ Q gi|254780214|r 2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPD------------------ 63 (271) Q Consensus 2 ~~~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d------------------ 63 (271) |..-||+||=.|... | .|++|+. ++++||||||+. T Consensus 3 ~~~~~I~fldVGqG~------a----------------daili~~-----~g~~iLID~G~~~~~~~~~~~~~~~~~~~~ 55 (547) T 2bib_A 3 SSGNKIHFINVQEGG------S----------------DAIILES-----NGHFAMVDTGEDYDFPDGSDSRYPWREGIE 55 (547) T ss_dssp CSCEEEEEECBSSSB------C----------------CEEEEEE-----TTEEEEEECCCCSCCCCSSSTTSCCCTTCC T ss_pred CCCCEEEEEECCCCC------C----------------EEEEEEE-----CCEEEEEECCCCCCCCCCCCCCCCCCCCCC T ss_conf 889999999889999------8----------------8999999-----999999989998656643222222222345 Q ss_pred ----------HHHHHHHCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEE Q ss_conf ----------1566752233420599997435242201110243331782111013112023 Q gi|254780214|r 64 ----------FYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCM 115 (271) Q Consensus 64 ----------~r~ql~~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~ 115 (271) +...|.+.++++||+|||||.|.||++||+.|..-+ ..-.||.|+... T Consensus 56 ~~~~~~~~~~v~~~L~~~gI~~ID~vIiTH~H~DHigGl~~ll~~~----~v~~i~~~~~~~ 113 (547) T 2bib_A 56 TSYKHVLTDRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLSTY----PVDRVYLKKYSD 113 (547) T ss_dssp CCGGGCCHHHHHHHHHHTTCCCBSCEECCCSCHHHHTTHHHHHHHS----CBSEEECCCCCG T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHCCHHHHHHHC----CCCEEEECCCCC T ss_conf 5433212678899898759893799999999605769799999658----787899799752 No 22 >1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Probab=99.42 E-value=6.2e-13 Score=98.64 Aligned_cols=76 Identities=24% Similarity=0.257 Sum_probs=53.4 Q ss_pred CEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCH-----HHHHHHCC--CCC Q ss_conf 72599998541789651337887877778767744430699993367789718999879841-----56675223--342 Q gi|254780214|r 3 DYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDF-----YMQVLREQ--VLS 75 (271) Q Consensus 3 ~~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~-----r~ql~~~~--i~~ 75 (271) -+||++||++|+..-+|... +....++++|+. +++++|||||+.. ..++.+.+ .++ T Consensus 11 ~~m~~~~~~~g~~~~~~~~~------------~~~~~~~~li~~-----~~~~iLIDtG~~~~~~~l~~~l~~~g~~~~~ 73 (221) T 1ztc_A 11 HHMELKILVTGGNVFVPGRL------------NAHFSTVVYLEH-----KDRRIIIDPGNLSSMDELEEKFSELGISPDD 73 (221) T ss_dssp CCEEEEEEECCBEEEETTTE------------ECCBCCEEEEEE-----TTEEEEECCCCGGGHHHHHHHHHHHTCCGGG T ss_pred CEEEEEEEECCCCEECCCCC------------CCCCEEEEEEEE-----CCEEEEEECCCCCCHHHHHHHHHHCCCCHHH T ss_conf 53698999818975458866------------788237999998-----9999999199972199999999984999689 Q ss_pred CCEEEEECCCHHHHHHCCHH Q ss_conf 05999974352422011102 Q gi|254780214|r 76 IDAVLYTHPHADHIHGIDGL 95 (271) Q Consensus 76 Id~I~iTH~H~DHi~Gl~~L 95 (271) ||+||+||.|+||++|+..+ T Consensus 74 I~~Ii~TH~H~DH~gg~~~~ 93 (221) T 1ztc_A 74 ITDVLFTHVHLDHIFNSVLF 93 (221) T ss_dssp CCEEECSCCCHHHHGGGGGC T ss_pred CCEEEECCCCCCCCCCHHHC T ss_conf 84999599872444541210 No 23 >1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Probab=99.15 E-value=1e-10 Score=84.90 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=49.1 Q ss_pred CEEEEEECCCCCCCEEEEEECCCCHH-----HHHHHCC--CCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECC Q ss_conf 06999933677897189998798415-----6675223--3420599997435242201110243331782111013112 Q gi|254780214|r 40 SSLKISRVSERGSNTTVIVDTGPDFY-----MQVLREQ--VLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAP 112 (271) Q Consensus 40 ~s~~i~~~~~~~~~~~iLiD~G~d~r-----~ql~~~~--i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~ 112 (271) +|.+|.. ++++||||||..-. .++.+.+ +++|++||+||.|.||++|++.|+. +...+||+++ T Consensus 39 ~~~li~~-----~~g~iLID~G~~~~~~~~~~~l~~~g~~~~~I~~Il~TH~H~DH~gg~~~l~~-----~~~~~V~~~~ 108 (269) T 1sml_A 39 TALLVQT-----PDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKR-----RTGAKVAANA 108 (269) T ss_dssp CCEEEEE-----TTEEEEECCBSGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHH-----HSSCEEEECH T ss_pred EEEEEEE-----CCEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCEEEECCCCCCCCCCHHHHHH-----HHCCCEEECH T ss_conf 8999998-----99769984899512999999999749980325499979998354150999999-----8699476378 Q ss_pred EEEEEECC Q ss_conf 02321002 Q gi|254780214|r 113 DCMKHLFE 120 (271) Q Consensus 113 ~~~~~l~~ 120 (271) .....+.+ T Consensus 109 ~~~~~~~~ 116 (269) T 1sml_A 109 ESAVLLAR 116 (269) T ss_dssp HHHHHHHT T ss_pred HHHHHHHH T ss_conf 89887750 No 24 >2gmn_A Metallo-beta-lactamase; hydrolase; 1.40A {Bradyrhizobium japonicum usda 110} SCOP: d.157.1.1 Probab=99.03 E-value=5e-10 Score=80.58 Aligned_cols=72 Identities=21% Similarity=0.225 Sum_probs=49.1 Q ss_pred CEEEEEECCCCCCCEEEEEECCCC-----HHHHHHHCC--CCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECC Q ss_conf 069999336778971899987984-----156675223--3420599997435242201110243331782111013112 Q gi|254780214|r 40 SSLKISRVSERGSNTTVIVDTGPD-----FYMQVLREQ--VLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAP 112 (271) Q Consensus 40 ~s~~i~~~~~~~~~~~iLiD~G~d-----~r~ql~~~~--i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~ 112 (271) ++.+|.. +++.+|||+|.. ++.++.+.+ .++|++|++||.|.||++|+..|+.. ...+||+++ T Consensus 36 n~ylI~~-----~~~~iLID~G~~~~~~~i~~~l~~~g~~~~~v~~ii~TH~H~DH~gg~~~l~~~-----~~a~i~~~~ 105 (274) T 2gmn_A 36 AVYVIKT-----SQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKE-----TGAQLVAGE 105 (274) T ss_dssp CCEEEEE-----TTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHH-----HCCEEEEEG T ss_pred EEEEEEE-----CCEEEEEECCCCCHHHHHHHHHHHCCCCCHHEEEEEECCCCCCCCCCHHHHHHH-----CCCEEEEEH T ss_conf 9999998-----999799909894349999999997599813303999698996350625565775-----398487501 Q ss_pred EEEEEECCC Q ss_conf 023210022 Q gi|254780214|r 113 DCMKHLFES 121 (271) Q Consensus 113 ~~~~~l~~~ 121 (271) .....++.. T Consensus 106 ~~~~~~~~~ 114 (274) T 2gmn_A 106 RDKPLLEGG 114 (274) T ss_dssp GGHHHHHHT T ss_pred HHHHHHHCC T ss_conf 010444323 No 25 >1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Probab=98.93 E-value=5e-10 Score=80.59 Aligned_cols=45 Identities=27% Similarity=0.374 Sum_probs=34.5 Q ss_pred CCCEEEEEECCCC---------HHHHHHHCCC--CCCCEEEEECCCHHHHHHCCHH Q ss_conf 8971899987984---------1566752233--4205999974352422011102 Q gi|254780214|r 51 GSNTTVIVDTGPD---------FYMQVLREQV--LSIDAVLYTHPHADHIHGIDGL 95 (271) Q Consensus 51 ~~~~~iLiD~G~d---------~r~ql~~~~i--~~Id~I~iTH~H~DHi~Gl~~L 95 (271) .++..||||||.+ +..+|.+.++ ++||+|++||.|.||++|+..+ T Consensus 104 ~g~~~iLIDtG~g~~~~~~~~~l~~~L~~~Gi~p~dId~VvlTH~H~DHiGGl~~~ 159 (331) T 1p9e_A 104 TGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVG 159 (331) T ss_dssp CSSCEEEECCCCTTSSCTTCCCHHHHHHHTTCCGGGCCEEECSCCCHHHHGGGEET T ss_pred ECCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHCCHHHH T ss_conf 89988999899985666118899999998499989997999597970101413355 No 26 >3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Probab=98.92 E-value=1.1e-09 Score=78.39 Aligned_cols=50 Identities=28% Similarity=0.427 Sum_probs=37.3 Q ss_pred EEEEEECCCCCCCEEEEEECCCC-------------------HHHHHHHCCC--CCCCEEEEECCCHHHHHHCCHH Q ss_conf 69999336778971899987984-------------------1566752233--4205999974352422011102 Q gi|254780214|r 41 SLKISRVSERGSNTTVIVDTGPD-------------------FYMQVLREQV--LSIDAVLYTHPHADHIHGIDGL 95 (271) Q Consensus 41 s~~i~~~~~~~~~~~iLiD~G~d-------------------~r~ql~~~~i--~~Id~I~iTH~H~DHi~Gl~~L 95 (271) |.||+. ++.+||||||.+ +..+|.+.++ ++||+|++||+|.||++|+.+. T Consensus 50 ~~LI~~-----~~~~iLiDtG~g~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~p~dId~VilTH~H~DH~Ggl~~~ 120 (280) T 3esh_A 50 PILIQT-----AQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAAGLTDQ 120 (280) T ss_dssp CEEEEC-----SSCEEESCCTTCSSCSCHHHHHHTTCSSCCCHHHHHHTTTCCTTSCCEEECSCCCHHHHGGGSCT T ss_pred EEEEEE-----CCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCEEECCCCCCCCCCCHHHC T ss_conf 999992-----99059996289962235532333577631069999998499979998997678966545880002 No 27 >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Probab=98.92 E-value=1e-09 Score=78.61 Aligned_cols=124 Identities=16% Similarity=0.144 Sum_probs=61.2 Q ss_pred CCEEEEEECCCCHH---HHHHHCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCC Q ss_conf 97189998798415---667522334205999974352422011102433317821110131120232100222210136 Q gi|254780214|r 52 SNTTVIVDTGPDFY---MQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKA 128 (271) Q Consensus 52 ~~~~iLiD~G~d~r---~ql~~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~ 128 (271) ++..+|||+|.+.. .++.+.+. +|++|++||.|+||++|+..|+. ..+.++|+.+...+.+.......... T Consensus 23 ~~~~ilID~G~~~~~i~~~l~~~~~-~i~~Vi~TH~H~DH~gg~~~l~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~ 96 (210) T 2xf4_A 23 TRLAALVDPGGDAEKIKQEVDASGV-TLMQILLTHGHLDHVGAASELAQ-----HYGVPVIGPEKEDEFWLQGLPAQSRM 96 (210) T ss_dssp TCEEEEECCCSCHHHHHHHHHHHTC-EEEEEECSCSCHHHHTTHHHHHH-----HHTCCEECCCGGGHHHHHTHHHHHHH T ss_pred CCEEEEEECCCCHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCHHHHHH-----HHCCCEEEECCHHHHHHCCCHHHHHH T ss_conf 9989999798089999999997799-34899978799855351899877-----50984785010456652042123211 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEE-CCCEECCCCCCC--CEEEECCC Q ss_conf 677531001232112344333420115874899999950-776211233468--62530323 Q gi|254780214|r 129 LDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQ-HGRISSLGFRFG--NVAYCTDV 187 (271) Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-Hg~~~~~Gyri~--~~~Y~~Dt 187 (271) .......+......+ ........+..++..+..+ | ...++.|.+. ++++++|. T Consensus 97 ~~~~~~~~~~~~~~~-----~dg~~~~~g~~~~~~i~tPGH-T~g~~~~~~~~~~~l~~GD~ 152 (210) T 2xf4_A 97 FGLDECQPLTPDRWL-----NDGDRVSVGNVTLQVLHCPGH-TPGHVVFFDEQSQLLISGDV 152 (210) T ss_dssp TTCCCCCCCCCSBCC-----CTTCEEEETTEEEEEEECCSS-STTCEEEEETTTTEEEEETS T ss_pred CCCCCCCCCCCCEEE-----CCCCCCEECCEEEEEEEECCC-CCCCEEEEECCCCCCCCCCE T ss_conf 033345567785893-----168742369989999992699-99868999778884214888 No 28 >1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER assymmetric UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Probab=98.91 E-value=1.9e-09 Score=77.05 Aligned_cols=72 Identities=13% Similarity=0.230 Sum_probs=48.3 Q ss_pred CEEEEEECCCCCCCEEEEEECCCCH-----HHHHHHCC--CCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECC Q ss_conf 0699993367789718999879841-----56675223--3420599997435242201110243331782111013112 Q gi|254780214|r 40 SSLKISRVSERGSNTTVIVDTGPDF-----YMQVLREQ--VLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAP 112 (271) Q Consensus 40 ~s~~i~~~~~~~~~~~iLiD~G~d~-----r~ql~~~~--i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~ 112 (271) +|.+|.. +++.+|||||... +.++...+ .++|++||+||.|.||++|+..++ ...+.+||+++ T Consensus 26 ~~~li~~-----~~~~iLID~G~~~~~~~i~~~l~~~g~~~~~i~~il~TH~H~DH~gg~~~~~-----~~~~a~i~~~~ 95 (263) T 1k07_A 26 ASYLIVT-----PRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIK-----QQTKAKYMVMD 95 (263) T ss_dssp CCEEEEE-----TTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSSSSHHHHTTHHHHH-----HHHCCEEEEEH T ss_pred EEEEEEE-----CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHCHHHHHH-----HHCCCEEEEEC T ss_conf 9999998-----9989999398952099999999976999534269997898701114199998-----75399799940 Q ss_pred EEEEEECCC Q ss_conf 023210022 Q gi|254780214|r 113 DCMKHLFES 121 (271) Q Consensus 113 ~~~~~l~~~ 121 (271) .....+.+. T Consensus 96 ~~~~~l~~~ 104 (263) T 1k07_A 96 EDVSVILSG 104 (263) T ss_dssp HHHHHHHTT T ss_pred HHHHHHHHH T ss_conf 587777521 No 29 >2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus HB8} Probab=98.88 E-value=1.3e-08 Score=71.71 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=39.4 Q ss_pred CCCEEEEEECCCCHH-------HHHHHCC--CCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEE Q ss_conf 897189998798415-------6675223--3420599997435242201110243331782111013112023 Q gi|254780214|r 51 GSNTTVIVDTGPDFY-------MQVLREQ--VLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCM 115 (271) Q Consensus 51 ~~~~~iLiD~G~d~r-------~ql~~~~--i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~ 115 (271) +++..+|||||.+.. .++.+.+ .++|++|++||.|.||++|...++ +...+||+++... T Consensus 29 ~~~~~vlIDtG~~~~~~~~~l~~~l~~~g~~~~~I~~Vi~TH~H~DH~Gg~~~l~------~~g~~v~~~~~~~ 96 (317) T 2zo4_A 29 GAGEVALVDTALGTRAARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFE------GLGARVFLHEEEF 96 (317) T ss_dssp ETTEEEEECCCCSSHHHHHHHHHHHHHTTCCGGGCCEEEESCCSHHHHTTHHHHH------HTTCEEEEEGGGT T ss_pred ECCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHH------HCCCCEECCHHHH T ss_conf 8998999989999778999999999974999777249997998822222199997------4599831378888 No 30 >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Probab=98.86 E-value=1.4e-09 Score=77.89 Aligned_cols=117 Identities=16% Similarity=0.228 Sum_probs=62.5 Q ss_pred CEEEEEECCCC-HHHHHHH-----CCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCC Q ss_conf 71899987984-1566752-----23342059999743524220111024333178211101311202321002222101 Q gi|254780214|r 53 NTTVIVDTGPD-FYMQVLR-----EQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCF 126 (271) Q Consensus 53 ~~~iLiD~G~d-~r~ql~~-----~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f 126 (271) ++.+|||+|.. ...++++ .+.++|++|++||.|.||++|++.|. ..-...+||+++.+.+.+...+.. T Consensus 49 e~~vLIDtg~~~~~~~~l~~i~~~i~~~~I~~II~TH~H~DH~ggl~~l~----~~~p~a~i~~~~~~~~~~~~~~~~-- 122 (414) T 2q9u_A 49 ECPTVIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSLKDHY----HKFTNATFVCTKKCQEHLKILYGM-- 122 (414) T ss_dssp SSCEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCSGGGTTTHHHHG----GGSTTCEEEECHHHHHHHHHHHCC-- T ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHH----HHCCCCEEEECHHHHHHHHHHCCC-- T ss_conf 98899909980169999999997569877998996909664760299999----878898799758999888874389-- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEECCCEECCCCCC-CCEEEECCC Q ss_conf 3667753100123211234433342011587489999995077621123346-862530323 Q gi|254780214|r 127 KALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRF-GNVAYCTDV 187 (271) Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~Hg~~~~~Gyri-~~~~Y~~Dt 187 (271) .... .... .........+..+++.+.+..|.+....-|.- .++.|++|. T Consensus 123 ---~~~~------~~~~---~~g~~l~lg~~~l~~i~~p~gH~~~~~~~y~~~~~iLfsGD~ 172 (414) T 2q9u_A 123 ---EKAT------WLIV---DDKYTLKIGKRTLKFIPVPLLHWPDSTFTYCPEDKILFSNDG 172 (414) T ss_dssp ---TTCC------EEEC---CTTCCEECSSCEEEEEECTTSSSTTCEEEEETTTTEEEEETT T ss_pred ---CCCC------EEEE---CCCCEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEECCC T ss_conf ---8652------5871---589889756558999703689868978999989896894574 No 31 >1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Probab=98.84 E-value=2e-09 Score=76.85 Aligned_cols=122 Identities=11% Similarity=0.149 Sum_probs=65.0 Q ss_pred EEEEEECCCCCCCEEEEEECCC-CHHHHHH---HC--CCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEE Q ss_conf 6999933677897189998798-4156675---22--3342059999743524220111024333178211101311202 Q gi|254780214|r 41 SLKISRVSERGSNTTVIVDTGP-DFYMQVL---RE--QVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDC 114 (271) Q Consensus 41 s~~i~~~~~~~~~~~iLiD~G~-d~r~ql~---~~--~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~ 114 (271) |-+|. ++++.+|||+|. ....+++ +. +.++|++|++||.|.||++|++.|+.-+ ....+||+++.. T Consensus 54 sYLI~-----~~~~~vLIDtg~~~~~~~~l~~l~~~i~~~~I~yIi~TH~H~DH~Ggl~~l~~~~---~~~~~i~~~~~~ 125 (410) T 1vme_A 54 AYLVK-----LNGANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTI---GHDVEIIASNFG 125 (410) T ss_dssp EEEEE-----CSSCEEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCCHHHHTTHHHHHHHH---CSCCEEEECHHH T ss_pred EEEEE-----ECCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHH---CCCCEEEECHHH T ss_conf 99999-----7995799919975679999999997579767689994939653775499999970---999899978888 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEECCCEECCCCCCCCEEEECCC Q ss_conf 3210022221013667753100123211234433342011587489999995077621123346862530323 Q gi|254780214|r 115 MKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGNVAYCTDV 187 (271) Q Consensus 115 ~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~Hg~~~~~Gyri~~~~Y~~Dt 187 (271) .+.+...+. .. ....++. .......+..+++.+.+..|.+...+-| ..++.|++|. T Consensus 126 ~~~~~~~~~----~~---------~~~~v~~---g~~l~lG~~~l~~i~~P~~H~p~~~~~y-~~~iLFsgD~ 181 (410) T 1vme_A 126 KRLLEGFYG----IK---------DVTVVKD---GEEREIGGKKFKFVMTPWLHWPDTMVTY-LDGILFSCDV 181 (410) T ss_dssp HHHHHHHHC----CC---------CCEECCT---TCEEEETTEEEEEEECTTSSSTTCEEEE-ETTEEEEETT T ss_pred HHHHHHCCC----CC---------CCEEECC---CCEEEECCEEEEEEECCCCCCCCCCCEE-ECCEEEECCC T ss_conf 642010167----65---------3168357---9999866726999978998889971021-2898998863 No 32 >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Probab=98.82 E-value=2.1e-09 Score=76.75 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=43.7 Q ss_pred CEEEEEECCCC-HHHHH---HHC--CCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCC Q ss_conf 71899987984-15667---522--33420599997435242201110243331782111013112023210022 Q gi|254780214|r 53 NTTVIVDTGPD-FYMQV---LRE--QVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFES 121 (271) Q Consensus 53 ~~~iLiD~G~d-~r~ql---~~~--~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~ 121 (271) ++.+|||+|.. ...++ ++. +.++|++|++||.|.||++|++.|.. .-...++|+++...+.+... T Consensus 43 e~~vLIDtg~~~~~~~~~~~l~~~i~~~~I~~II~TH~H~DHiggl~~l~~----~~~~~~v~~~~~~~~~~~~~ 113 (402) T 1e5d_A 43 EKTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIE----ACQPEKIFTSSLGQKAMESH 113 (402) T ss_dssp SSCEEECCCCGGGHHHHHHHHHTTSCGGGCCEEEECCCSHHHHTTHHHHHH----HHCCSEEEEEHHHHHHHHHH T ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHH----HCCCCEEEECHHHHHHHHHC T ss_conf 999999599824699999999975698788889939996678867999999----77999899757788887731 No 33 >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* Probab=98.78 E-value=3.3e-09 Score=75.48 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=43.3 Q ss_pred CCEEEEEECCCCH-----HHHHH----HCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCC Q ss_conf 9718999879841-----56675----2233420599997435242201110243331782111013112023210022 Q gi|254780214|r 52 SNTTVIVDTGPDF-----YMQVL----REQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFES 121 (271) Q Consensus 52 ~~~~iLiD~G~d~-----r~ql~----~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~ 121 (271) +++.+|||+|..- ..++. ..+.++|++|++||.|.||++|++.+.. .....++|+++.....+... T Consensus 43 ~~~~~LIDtG~~~~~~~~~~~l~~~~~~i~~~~I~~Ii~TH~H~DH~ggl~~~~~----~~~~~~~~~~~~~~~~l~~~ 117 (404) T 2ohh_A 43 DEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHR----RFPEAPIYCTEVAVKGLLKH 117 (404) T ss_dssp SSCEEEECCCCTTCHHHHHHHHHHHHHHHTCCCCCEEECSCCSHHHHTTHHHHHH----HSTTCCEEECHHHHHHHHHH T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH----HCCCCEEEECHHHHHHHHHH T ss_conf 9825999198984389999999999864796568699989999875411999998----77998899678888777752 No 34 >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Probab=98.78 E-value=2.7e-09 Score=76.06 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=43.1 Q ss_pred CEEEEEECCC-CHHHHHHH-----CCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECC Q ss_conf 7189998798-41566752-----23342059999743524220111024333178211101311202321002 Q gi|254780214|r 53 NTTVIVDTGP-DFYMQVLR-----EQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFE 120 (271) Q Consensus 53 ~~~iLiD~G~-d~r~ql~~-----~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~ 120 (271) +..+|||+|. ....++++ .+.++|++|++||.|.||++|++.|.. ....+++|+++.+.+.+.. T Consensus 44 ~~~vLIDtg~~~~~~~~~~~l~~~~~~~~I~~Ii~TH~H~DH~Gg~~~l~~----~~p~~~v~~~~~~~~~~~~ 113 (398) T 1ycg_A 44 DKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIME----LCPDAHVLCTQRAFDSLKA 113 (398) T ss_dssp SSCEEECCCCGGGHHHHHHHHHHHCSSCCCSEEEESCCSHHHHTTHHHHHH----HCTTCEEEECHHHHHHHHH T ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHH----HCCCCEEEECHHHHHHHHH T ss_conf 999999499846799999999975597686599927898677705999998----6899989968999987764 No 35 >3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching, alternative binding site, product complex; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovarkurstaki} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Probab=98.75 E-value=1.6e-08 Score=71.23 Aligned_cols=94 Identities=12% Similarity=0.165 Sum_probs=53.7 Q ss_pred EEEEEEEEECCCCCEECCCCCCCCCCCCCCCCC--CCCC-EEEEEECCCCCCCEEEEEECCCC----------------- Q ss_conf 259999854178965133788787777876774--4430-69999336778971899987984----------------- Q gi|254780214|r 4 YYHFTILGCGASLGVPRITGDWGACDPTNPKNR--RTRS-SLKISRVSERGSNTTVIVDTGPD----------------- 63 (271) Q Consensus 4 ~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~--R~~~-s~~i~~~~~~~~~~~iLiD~G~d----------------- 63 (271) ..||.+|-+|.-. .+ -+.-.++...++ +... +.+|+. ++..||||+|-+ T Consensus 7 ~~~~~~l~~G~~~-~~-----~~~~~~~~~~~~~~~~pv~~~LI~~-----~~g~iLiDtG~~~~~~~~~~~~~~~~~~~ 75 (254) T 3dha_A 7 VKKLYFIPAGRCM-LD-----HSSVNSALTPGKLLNLPVWCYLLET-----EEGPILVDTGMPESAVNNEGLFNGTFVEG 75 (254) T ss_dssp BSEEEEEEEEEEE-EE-----GGGTSTTSCSCCEEEEEEEEEEEEE-----TTEEEEECCCCCGGGBTCTTTTTTSTTTT T ss_pred EEEEEEECCCEEE-EC-----HHHCCCCCCCCCEEEEEEEEEEEEE-----CCCEEEEECCCCCCCCCCCCCCCCCCCCC T ss_conf 1489995386599-88-----6880567999966986348999998-----99519995988955322331125421112 Q ss_pred -----------HHHHHHHCCC--CCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEE Q ss_conf -----------1566752233--4205999974352422011102433317821110131120232 Q gi|254780214|r 64 -----------FYMQVLREQV--LSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMK 116 (271) Q Consensus 64 -----------~r~ql~~~~i--~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~ 116 (271) +..||.+.++ .+|++|++||.|.||++|+..+ . ..++|..+.-.+ T Consensus 76 ~~~~~~~~~~~l~~~L~~~G~~p~dI~~Vi~TH~H~DH~Gg~~~f------~--~A~i~~~~~e~~ 133 (254) T 3dha_A 76 QILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNGAF------T--NTPIIVQRTEYE 133 (254) T ss_dssp TEEEEBCGGGSHHHHHHHHTCCGGGCSEEECSCCSHHHHTTGGGC------S--SSCEEEEHHHHH T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHCCCCCCC------C--CCCCCCCHHHHH T ss_conf 356565606689999998499979996999079972102753113------5--642003888999 No 36 >2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Probab=98.74 E-value=1.6e-08 Score=71.20 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=43.2 Q ss_pred CCEEEEEECCCCH-----HHHHHHC--CCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECC Q ss_conf 9718999879841-----5667522--3342059999743524220111024333178211101311202321002 Q gi|254780214|r 52 SNTTVIVDTGPDF-----YMQVLRE--QVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFE 120 (271) Q Consensus 52 ~~~~iLiD~G~d~-----r~ql~~~--~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~ 120 (271) ++..+|||||..- ..++.+. +.++|++|++||.|.||++|+..|+. .....+||+++.+.+.+.+ T Consensus 33 ~~~~~lIDtG~~~~~~~~~~~l~~~~~~~~~I~~ii~TH~H~DH~gg~~~l~~----~~p~~~v~~~~~~~~~~~~ 104 (303) T 2vw8_A 33 EASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCP----RLPNVQVLASERTCQAWKS 104 (303) T ss_dssp TTEEEEECCCCGGGHHHHHHHHHHHCSCGGGEEEEECCCCSTTTTTTHHHHGG----GCTTCEEEEEHHHHHHTTC T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCEEEECCCCCCCCCCHHHHHH----CCCCCEEEECHHHHHHHHC T ss_conf 98689995989852999999999828982427989959099865086345542----1678669944889998736 No 37 >2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center, quorum quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Probab=98.70 E-value=2.4e-08 Score=70.16 Aligned_cols=63 Identities=24% Similarity=0.285 Sum_probs=41.1 Q ss_pred CEEEEEECCCCCCCEEEEEECCCC---------------------------HHHHHHHCCC--CCCCEEEEECCCHHHHH Q ss_conf 069999336778971899987984---------------------------1566752233--42059999743524220 Q gi|254780214|r 40 SSLKISRVSERGSNTTVIVDTGPD---------------------------FYMQVLREQV--LSIDAVLYTHPHADHIH 90 (271) Q Consensus 40 ~s~~i~~~~~~~~~~~iLiD~G~d---------------------------~r~ql~~~~i--~~Id~I~iTH~H~DHi~ 90 (271) .+.+|+. +++.||||+|-. +..||.+.++ .+|+.|++||+|.||++ T Consensus 44 ~~~LI~~-----~~g~iLvDtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~p~dI~~VilTH~H~DH~G 118 (276) T 2r2d_A 44 SAYLIQC-----TDATVLYDTGCHPECMGTNGRWPAQSQLNAPYIGASECNLPERLRQLGLSPDDISTVVLSHLHNDHAG 118 (276) T ss_dssp EEEEEEC-----SSCEEEECCCSCTTCSSTTCSSCHHHHHHSCBCCCTTCSHHHHHHHTTCCGGGCSEEECSCCSTTTST T ss_pred EEEEEEE-----CCEEEEEECCCCHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHCCEEECCCCCCCCCC T ss_conf 8999994-----99049995788845512433343022211554565320299999983999799989984799604237 Q ss_pred HCCHHHHHHHCCCCEEEEEECCEEE Q ss_conf 1110243331782111013112023 Q gi|254780214|r 91 GIDGLRGYFLKQKRPIDVYAAPDCM 115 (271) Q Consensus 91 Gl~~Lr~~~~~~~~~i~vy~~~~~~ 115 (271) |+..+ . ..++|..+... T Consensus 119 gl~~f------~--~a~i~~~~~e~ 135 (276) T 2r2d_A 119 CVEYF------G--KSRLIAHEDEF 135 (276) T ss_dssp TGGGC------S--SSEEEEEHHHH T ss_pred CCCCC------C--CCCCCCCHHHH T ss_conf 41357------8--63000389999 No 38 >3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, NSR435A, DFA5; 1.80A {Nostoc SP} Probab=98.64 E-value=2.1e-08 Score=70.55 Aligned_cols=169 Identities=14% Similarity=0.145 Sum_probs=79.9 Q ss_pred CEEEEEECCCCH-HHHHH---H--CCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCC Q ss_conf 718999879841-56675---2--23342059999743524220111024333178211101311202321002222101 Q gi|254780214|r 53 NTTVIVDTGPDF-YMQVL---R--EQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCF 126 (271) Q Consensus 53 ~~~iLiD~G~d~-r~ql~---~--~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f 126 (271) +..+|||+|..- ..+++ + .+.++|++|++||.|.||++|+..+.. .....++|+++...+.+.+.+.. T Consensus 51 d~~vLIDtG~~~~~~~~l~~~~~~~~~~~I~~IilTH~H~DH~Ggl~~~~~----~~p~~~v~~~~~~~~~l~~~~~~-- 124 (262) T 3hnn_A 51 DKTAIIDPPVESFMKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFKALLE----LAPQITFVCSLPAAGDLRAAFPD-- 124 (262) T ss_dssp SSEEEECCCCHHHHHHHHHHHHHHSCGGGEEEEECSSCCGGGHHHHHHHHH----HCTTCEEEECHHHHHHHHHHSSS-- T ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHH----HCCCCEEEECHHHHHHHHHHHCC-- T ss_conf 999999189755799999999963784258899959977777622599997----44485799778999888765235-- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECC-CCCEEEEEEEEECCCEECCCCCC-CCEEEECCCCC--CHHHHHHHHCCHH Q ss_conf 36677531001232112344333420115-87489999995077621123346-86253032330--0167888622211 Q gi|254780214|r 127 KALDDRTYPPIVNPIVIENNDVPICMKSA-GGVIEAIPILQQHGRISSLGFRF-GNVAYCTDVNA--FPAESLEKLQNLD 202 (271) Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~~~~~~Hg~~~~~Gyri-~~~~Y~~Dt~~--~~e~~~~~l~~~D 202 (271) ... ....+.. ....... +..+...+....|......-|.- +++.+++|.-. .+..... ....+ T Consensus 125 --~~~-------~~~~~~~---gd~~~~~~g~~l~~i~~~~~H~~~~~~~y~~~~~vLftgD~~~~~~~~~~~~-~~~~~ 191 (262) T 3hnn_A 125 --DNL-------NILPMRG---KETLDLGKGHVLKFLPIPSPRWPAGLCTYDVQTQILYTDKIFGAHICGDDVF-DDNWE 191 (262) T ss_dssp --SCC-------EEEECCS---SCEEECSTTCEEEEEECCCSSCTTCEEEEETTTTEEEEETTTCCCCCCSCCE-ESCGG T ss_pred --CCC-------CCCEECC---CCEEEECCCCEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCC-CCCHH T ss_conf --664-------3220025---5147622782379996689998996299987888699666345677886550-67716 Q ss_pred EEEEECCCC-C--CCCCCCCHHHHHHHHHHCCCCEEEEECC Q ss_conf 025302335-7--6887579999999999729977999768 Q gi|254780214|r 203 FLIIDALKN-G--LHSSHFSLSESLKKIELINPKNAILTHM 240 (271) Q Consensus 203 ~lI~d~l~~-~--~~~~H~~~~ea~~~~~~~~~k~~~LtHl 240 (271) .+..+...+ . -.+....+.++++.++++.++.++-.|= T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~sL~~l~~L~~~~I~PgHG 232 (262) T 3hnn_A 192 SFKEDQRYYFNCLMAPHAIHVEAALEKISDLQVRLYAVGHG 232 (262) T ss_dssp GTHHHHHHHHHHHTGGGHHHHHHHHHHHTTSCCSEEEESSS T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCC T ss_conf 78999999999850524999999999987899899995798 No 39 >3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} Probab=98.62 E-value=2.1e-08 Score=70.56 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=43.7 Q ss_pred CCEEEEEECCC--CHHHHHHH----CCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECC Q ss_conf 97189998798--41566752----23342059999743524220111024333178211101311202321002 Q gi|254780214|r 52 SNTTVIVDTGP--DFYMQVLR----EQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFE 120 (271) Q Consensus 52 ~~~~iLiD~G~--d~r~ql~~----~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~ 120 (271) ++..+|||+|. +...++++ ...++|++|++||.|.||++|+..|. . ..+++|+++.+.+.+++ T Consensus 39 ~~~~vlIDtg~~~~~~~~l~~~i~~~~~~~i~~ii~TH~H~DH~gG~~~~~----~--~~~~i~a~~~~~~~~~~ 107 (219) T 3l6n_A 39 KKGVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFN----N--KGIKTYATAKTNEFLKK 107 (219) T ss_dssp TTEEEEESCCSSGGGHHHHHHHHHHHHSCCEEEEECSSSSTTTTCCTHHHH----H--TTCEEEECHHHHHHHHH T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHH----H--CCCEEEEHHHHHHHHHC T ss_conf 999999929899899999999998602996389997999954338689996----2--89889960222233210 No 40 >2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Probab=98.60 E-value=3.7e-08 Score=68.96 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=42.2 Q ss_pred EEEEEECCCCCCCEEEEEECCCCHHH--HHHHCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEE Q ss_conf 69999336778971899987984156--67522334205999974352422011102433317821110131120232 Q gi|254780214|r 41 SLKISRVSERGSNTTVIVDTGPDFYM--QVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMK 116 (271) Q Consensus 41 s~~i~~~~~~~~~~~iLiD~G~d~r~--ql~~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~ 116 (271) |.+|.. ++..+|||+|.+... +.++..-.++++|++||.|+||++|+..|+. ..+..+|..+.... T Consensus 15 ~ylI~~-----~~~~ilID~G~~~~~~~~~l~~~~~~~~~vi~TH~H~DH~~g~~~l~~-----~~~~~~~~~~~~~~ 82 (207) T 2zwr_A 15 AYLVET-----GEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVE-----ALDLPVYLHPLDLP 82 (207) T ss_dssp EEEEEE-----TTEEEEECCCSCHHHHHHHHHHHTCCCSCEECSCCCGGGTTTHHHHHH-----HHCCCEEECGGGHH T ss_pred EEEEEE-----CCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHCCHHHHHH-----HHCCCEEECCCCCC T ss_conf 999998-----998999949869999999999879972499979997667521999999-----86994896133220 No 41 >1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Probab=98.57 E-value=4.5e-08 Score=68.45 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=45.5 Q ss_pred EEEEEECCCCCCCEEEEEECCCCH--HHHHHH----CCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEE Q ss_conf 699993367789718999879841--566752----23342059999743524220111024333178211101311202 Q gi|254780214|r 41 SLKISRVSERGSNTTVIVDTGPDF--YMQVLR----EQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDC 114 (271) Q Consensus 41 s~~i~~~~~~~~~~~iLiD~G~d~--r~ql~~----~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~ 114 (271) |.+|.. ++..+|||+|.+- ..++++ ...++|++|++||.|.||++|+..|. +..+++|+++.+ T Consensus 39 ~~li~~-----~~~~iliDt~~~~~~~~~l~~~i~~~~~~pi~~vi~TH~H~DH~gg~~~~~------~~~~~v~~~~~~ 107 (232) T 1a7t_A 39 GMIVIN-----NHQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQ------RKGVQSYANQMT 107 (232) T ss_dssp EEEEEE-----TTEEEEESCCSSHHHHHHHHHHHHHHHCCEEEEEECSSSSHHHHTTHHHHH------HTTCEEEEEHHH T ss_pred EEEEEE-----CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHH------HCCCEEEEECCH T ss_conf 999998-----999999969899899999999998713997389997998852223399998------589959982202 Q ss_pred EEEECC Q ss_conf 321002 Q gi|254780214|r 115 MKHLFE 120 (271) Q Consensus 115 ~~~l~~ 120 (271) .+.+.+ T Consensus 108 ~~~~~~ 113 (232) T 1a7t_A 108 IDLAKE 113 (232) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 556543 No 42 >3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding, periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A Probab=98.57 E-value=1.9e-08 Score=70.73 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=43.1 Q ss_pred CCCEEEEEECCCC--HHHHHH---H-CCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCC Q ss_conf 8971899987984--156675---2-233420599997435242201110243331782111013112023210022 Q gi|254780214|r 51 GSNTTVIVDTGPD--FYMQVL---R-EQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFES 121 (271) Q Consensus 51 ~~~~~iLiD~G~d--~r~ql~---~-~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~ 121 (271) +++..+|||+|.+ ...++. + ...++|++|++||.|.||++|...+. . ...+||+++.+.+.+++. T Consensus 30 ~~~~~vliD~g~~~~~~~~l~~~i~~~~~~pi~~vi~TH~H~DH~gg~~~~~----~--~~~~i~a~~~~~~~~~~~ 100 (227) T 3iog_A 30 GAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWK----S--IGAKVVSTRQTRDLMKSD 100 (227) T ss_dssp CSSCEEEESCCSSHHHHHHHHHHHHTTCCSCEEEEECSSSSHHHHTTHHHHH----H--TTCEEEEEHHHHHHHHHH T ss_pred ECCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHCC----C--CCCEEEECHHHHHHHHHH T ss_conf 7998699929899799999999998614998419996899965328123305----4--683676179899998741 No 43 >2qed_A Hydroxyacylglutathione hydrolase; metallo-B- lactamase superfamily; 1.45A {Salmonella typhimurium LT2} SCOP: d.157.1.2 Probab=98.55 E-value=7.3e-08 Score=67.15 Aligned_cols=107 Identities=18% Similarity=0.233 Sum_probs=59.3 Q ss_pred CCEEEEEECCCCHH-HHHHHCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCC Q ss_conf 97189998798415-66752233420599997435242201110243331782111013112023210022221013667 Q gi|254780214|r 52 SNTTVIVDTGPDFY-MQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALD 130 (271) Q Consensus 52 ~~~~iLiD~G~d~r-~ql~~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~ 130 (271) .+..++||+|..-. .+.++..--++.+|++||.|+||+.|...++..+ ....+|++...... . T Consensus 28 ~~~avvIDPg~~~~il~~l~~~~~~l~~Il~TH~H~DHi~g~~~l~~~~----~~~~~~~~~~~~~~----------~-- 91 (258) T 2qed_A 28 EGRCVIVDPGEAAPVLKAIAEHKWMPEAIFLTHHHHDHVGGVKELLQHF----PQMTVYGPAETQDK----------G-- 91 (258) T ss_dssp TSEEEEECCSCHHHHHHHHHHHTCEEEEEECCSCCHHHHTTHHHHHHHC----TTCEEEECGGGGGG----------T-- T ss_pred CCEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHH----CCEEEECCCCCCCC----------C-- T ss_conf 9709998698759999999976990579993799987655335544432----02145215433345----------5-- Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEECCCEECCCCCCCCEEEECCC Q ss_conf 753100123211234433342011587489999995077621123346862530323 Q gi|254780214|r 131 DRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGNVAYCTDV 187 (271) Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~Hg~~~~~Gyri~~~~Y~~Dt 187 (271) ....+ ..+.....+++++..+..+-....++.|.+++.+++||| T Consensus 92 --------~~~~l-----~dgd~i~iG~~~~~vihTPGHT~g~v~~~~~~~lFtGDt 135 (258) T 2qed_A 92 --------ATHLV-----GDGDTIRVLGEKFTLFATPGHTLGHVCYFSRPYLFCGDT 135 (258) T ss_dssp --------CSEEC-----CTTCEEEETTEEEEEEECCSSSTTCEEEEETTEEEEETT T ss_pred --------CCEEE-----CCCCEEEECCEEEEEEECCCCCCCCEEEEECCEEEECCC T ss_conf --------41464-----058678768845799967899988667873240560781 No 44 >1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Probab=98.54 E-value=1.8e-07 Score=64.70 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=59.7 Q ss_pred CEEEEEECCCCCCCEEEEEECCCCHH-HHHHHCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEE Q ss_conf 06999933677897189998798415-66752233420599997435242201110243331782111013112023210 Q gi|254780214|r 40 SSLKISRVSERGSNTTVIVDTGPDFY-MQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHL 118 (271) Q Consensus 40 ~s~~i~~~~~~~~~~~iLiD~G~d~r-~ql~~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l 118 (271) .|-+|.. . ..+..++||+|..-. .+.++..-.++.+|++||.|+||++|...|+. ..+.++|+.+...+.+ T Consensus 13 y~Yli~d-~--~t~~~~vIDp~~~~~vl~~l~~~~~~l~~Il~TH~H~DH~~g~~~l~~-----~~~~~i~~~~~~~~~~ 84 (254) T 1xm8_A 13 YAYILHD-E--DTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKD-----RYGAKVIGSAMDKDRI 84 (254) T ss_dssp EEEEEEC-T--TTCCEEEECCSSHHHHHHHHHHHTCCCCEEECSSCCHHHHTTHHHHHH-----HHCCEEEEEGGGGGGS T ss_pred EEEEEEE-C--CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHH-----HCCCEEEEECCCCCCC T ss_conf 8999998-9--999899998978299999999779916899944788655266899988-----6398389733322458 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEECCCEECCCCCC--CCEEEECCC Q ss_conf 022221013667753100123211234433342011587489999995077621123346--862530323 Q gi|254780214|r 119 FESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRF--GNVAYCTDV 187 (271) Q Consensus 119 ~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~Hg~~~~~Gyri--~~~~Y~~Dt 187 (271) . . .. ..++ .+.....++.++..+..+-....++.|-+ .+++++||| T Consensus 85 ~----------------~-~~-~~~~-----dgd~i~~g~~~~~vi~tPGHT~ghv~~~~~~~~~lftGDt 132 (254) T 1xm8_A 85 P----------------G-ID-MALK-----DGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDT 132 (254) T ss_dssp T----------------T-EE-EEEC-----TTCEEEETTEEEEEEECCSSSSSCEEEEEGGGTEEEEETT T ss_pred C----------------C-CC-EEEC-----CCCEEEECCEEEEEEECCCCCCCCEEEEECCCCEEEECCE T ss_conf 7----------------8-98-7834-----8973678887899997279887756899757537885688 No 45 >2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Probab=98.54 E-value=1.7e-07 Score=64.79 Aligned_cols=47 Identities=30% Similarity=0.434 Sum_probs=32.5 Q ss_pred CCEEEEEECCCCHHH--HHHHCC--------C-CCCCEEEEECCCHHHHHHCCHHHHH Q ss_conf 971899987984156--675223--------3-4205999974352422011102433 Q gi|254780214|r 52 SNTTVIVDTGPDFYM--QVLREQ--------V-LSIDAVLYTHPHADHIHGIDGLRGY 98 (271) Q Consensus 52 ~~~~iLiD~G~d~r~--ql~~~~--------i-~~Id~I~iTH~H~DHi~Gl~~Lr~~ 98 (271) .+..++||+|.+... +.++.. . -+|++||+||.|+||++|...|+.- T Consensus 50 t~ea~vIDPg~d~~~il~~i~~~~~~~~~~~~~l~l~~ILlTH~H~DHigG~~~L~~~ 107 (311) T 2p18_A 50 THTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWDHSGGNAKLKAE 107 (311) T ss_dssp TTEEEEESCCSCCHHHHHHHHHTC--------CCEEEEEEESSSSHHHHTTHHHHHHH T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH T ss_conf 9979999189861899999999887531123697687998278887225249999998 No 46 >2yz3_A Metallo-beta-lactamase; enzyme-inhibitor complex, hydrolase; HET: M5P; 2.30A {Pseudomonas putida} SCOP: d.157.1.1 Probab=98.53 E-value=9.5e-08 Score=66.42 Aligned_cols=63 Identities=24% Similarity=0.338 Sum_probs=42.5 Q ss_pred CCEEEEEECCCCH--HHHHHH----CCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECC Q ss_conf 9718999879841--566752----23342059999743524220111024333178211101311202321002 Q gi|254780214|r 52 SNTTVIVDTGPDF--YMQVLR----EQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFE 120 (271) Q Consensus 52 ~~~~iLiD~G~d~--r~ql~~----~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~ 120 (271) ++..+|||+|.+- ..++++ ..-++|++|++||.|+||++|+..++ +..+++|+.+.+.+.+.. T Consensus 77 ~~~~vlIDtg~~~~~~~~l~~~i~~~~~~pi~~vi~TH~H~DH~gG~~~~~------~~~~~v~a~~~~~~~~~~ 145 (266) T 2yz3_A 77 GDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLR------AAGVATYASPSTRRLAEV 145 (266) T ss_dssp TTEEEEESCCSSHHHHHHHHHHHHHHTCSCEEEEECSSSSHHHHTTHHHHH------HTTCEEEECHHHHHHHHT T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCHHHHH------CCCCEEEEECCHHHHHHH T ss_conf 999999909999899999999999843997279997999810008755652------069769996202233332 No 47 >1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Probab=98.50 E-value=3e-07 Score=63.35 Aligned_cols=55 Identities=24% Similarity=0.263 Sum_probs=34.8 Q ss_pred CEEEEEECCCCCCCEEEEEECCCCH-HHHHHHCCCCCCCEEEEECCCHHHHHHCCHHHH Q ss_conf 0699993367789718999879841-566752233420599997435242201110243 Q gi|254780214|r 40 SSLKISRVSERGSNTTVIVDTGPDF-YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRG 97 (271) Q Consensus 40 ~s~~i~~~~~~~~~~~iLiD~G~d~-r~ql~~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~ 97 (271) .|-+|.. . ..+..++||+|..- ..+.++..--+|.+||+||.|+||+.|...|+. T Consensus 13 ysYli~d-~--~t~~a~vIDP~~~~~i~~~~~~~~l~l~~Il~TH~H~DHi~g~~~l~~ 68 (260) T 1qh5_A 13 YMYLVID-D--ETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVK 68 (260) T ss_dssp EEEEEEE-T--TTTEEEEESCSSHHHHHHHHHHHTCEEEEEECCCSSHHHHTTHHHHHH T ss_pred EEEEEEE-C--CCCEEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCHHHHCCHHHHHC T ss_conf 8999998-9--999899990898899999999779968899947898567510443101 No 48 >2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB: 2wrs_A* 1ko3_A 1ko2_A Probab=98.50 E-value=6.6e-08 Score=67.39 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=42.4 Q ss_pred CCEEEEEECCCCHH--HHHHH---C-CCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECC Q ss_conf 97189998798415--66752---2-3342059999743524220111024333178211101311202321002 Q gi|254780214|r 52 SNTTVIVDTGPDFY--MQVLR---E-QVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFE 120 (271) Q Consensus 52 ~~~~iLiD~G~d~r--~ql~~---~-~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~ 120 (271) ++..+|||+|.+.. .++++ . .-++|++|++||.|.||++|+..++ +..+++|+++.+.+.+.. T Consensus 46 ~~~~vlIDtg~~~~~~~~l~~~i~~~~~~~v~~vi~TH~H~DH~gg~~~~~------~~~~~~~~~~~~~~~~~~ 114 (230) T 2whg_A 46 GDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLR------AAGVATYASPSTRRLAEA 114 (230) T ss_dssp TTEEEEESCCSSHHHHHHHHHHHHHHTCSCEEEEECSSSSHHHHTTHHHHH------HTTCEEEECHHHHHHHHH T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHH------HCCCEEEECHHHHHHHHH T ss_conf 999999979899799999999999831997389997799820016099997------589949987899999985 No 49 >2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Probab=98.48 E-value=2.5e-07 Score=63.80 Aligned_cols=106 Identities=18% Similarity=0.185 Sum_probs=56.5 Q ss_pred CCCEEEEEECCCCHH---HHHHHCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEE-EECCEEEEEECCCCCCCC Q ss_conf 897189998798415---6675223342059999743524220111024333178211101-311202321002222101 Q gi|254780214|r 51 GSNTTVIVDTGPDFY---MQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDV-YAAPDCMKHLFESFRYCF 126 (271) Q Consensus 51 ~~~~~iLiD~G~d~r---~ql~~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~v-y~~~~~~~~l~~~~~y~f 126 (271) .++..++||+|..-. .++++..--+|.+||+||.|+||+.|...|+..+ +.++ ++....... T Consensus 26 ~t~eaivIDP~~~~~~~~~~~i~~~~~~i~~Il~TH~H~DH~~g~~~l~~~~-----~~~~~~~~~~~~~~--------- 91 (245) T 2gcu_A 26 PDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKL-----PGVKSVISKASGSK--------- 91 (245) T ss_dssp TTCEEEEESCBGGGHHHHHHHHHHHTCEEEEEECSSCCSSSCBSHHHHHHHS-----TTCEEEEEGGGCCC--------- T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHH-----HCCCCCCCCCCCCC--------- T ss_conf 9998999929987589999999986996789983589768871399999764-----15410001246766--------- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEECCCEECCCCCCC--------CEEEECCC Q ss_conf 36677531001232112344333420115874899999950776211233468--------62530323 Q gi|254780214|r 127 KALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFG--------NVAYCTDV 187 (271) Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~Hg~~~~~Gyri~--------~~~Y~~Dt 187 (271) ....++ ....+..+++++..+.++-....++.|.++ +++++||| T Consensus 92 ------------~d~~~~-----dgd~~~iG~~~l~vi~TPGHT~gsv~~~~~d~~~~~~~~~lFtGDt 143 (245) T 2gcu_A 92 ------------ADLFLE-----PGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFTGDA 143 (245) T ss_dssp ------------CSEEEC-----TTCEEEETTEEEEEEECCSSSTTCEEEEECCSTTSCSSCEEEEETT T ss_pred ------------CCEEEC-----CCCCCEECCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEECCC T ss_conf ------------756614-----8872148989999997789886338999436677776637995476 No 50 >1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Probab=98.44 E-value=1e-07 Score=66.19 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=45.2 Q ss_pred EEEEEECCCCCCCEEEEEECCC--CHHHHHHHC----CCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEE Q ss_conf 6999933677897189998798--415667522----3342059999743524220111024333178211101311202 Q gi|254780214|r 41 SLKISRVSERGSNTTVIVDTGP--DFYMQVLRE----QVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDC 114 (271) Q Consensus 41 s~~i~~~~~~~~~~~iLiD~G~--d~r~ql~~~----~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~ 114 (271) |.+|. ++++.+|||+|. +...+++++ .-++|.+||+||.|.||++|+..++ +..+++|+++.+ T Consensus 29 ~~~i~-----~~~~~iliD~~~~~~~~~~l~~~i~~~~~~~i~~vi~TH~H~DH~~G~~~~~------~~~~~i~~~~~~ 97 (223) T 1m2x_A 29 AVYLV-----TDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFG------KIGAKTYSTKMT 97 (223) T ss_dssp EEEEE-----ETTEEEEESCCSSGGGHHHHHHHHHHHHCCCEEEEECSSSSTTTTTTHHHHH------HTTCEEEEEHHH T ss_pred EEEEE-----ECCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHH------HCCCEEEECCCH T ss_conf 99999-----8998999979999899999999998841997589996799975106199998------689979961204 Q ss_pred EEEECC Q ss_conf 321002 Q gi|254780214|r 115 MKHLFE 120 (271) Q Consensus 115 ~~~l~~ 120 (271) .+.+.+ T Consensus 98 ~~~~~~ 103 (223) T 1m2x_A 98 DSILAK 103 (223) T ss_dssp HHHHHH T ss_pred HHHHHC T ss_conf 444420 No 51 >1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Probab=98.39 E-value=2e-07 Score=64.43 Aligned_cols=64 Identities=23% Similarity=0.275 Sum_probs=43.3 Q ss_pred CCEEEEEECCCCHH--HHHH---HCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCC Q ss_conf 97189998798415--6675---2233420599997435242201110243331782111013112023210022 Q gi|254780214|r 52 SNTTVIVDTGPDFY--MQVL---REQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFES 121 (271) Q Consensus 52 ~~~~iLiD~G~d~r--~ql~---~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~ 121 (271) ++..+|||+|.+.. .+++ +..-.+|++||+||.|.||++|+..|. ...+++|+++.+.+.+.+. T Consensus 41 ~~~~vliDtg~~~~~~~~~~~~i~~~~~~i~~ii~TH~H~DH~gg~~~l~------~~~~~~~a~~~~~~~~~~~ 109 (228) T 1jjt_A 41 NAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLN------SRSIPTYASELTNELLKKD 109 (228) T ss_dssp TTEEEEESCCSSHHHHHHHHHHHHTTTCEEEEEECSSSSHHHHTTHHHHH------HTTCCEEEEHHHHHHHHHT T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCHHHHHH------HCCCCEEECHHHHHHHHHC T ss_conf 99999997989989999999999965998579997899800108099998------6799888746677777631 No 52 >2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Probab=98.33 E-value=6.5e-07 Score=61.25 Aligned_cols=68 Identities=25% Similarity=0.352 Sum_probs=42.0 Q ss_pred CCCEEEEEECCCCHH--HH---HHHC--CCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEE Q ss_conf 897189998798415--66---7522--33420599997435242201110243331782111013112023210 Q gi|254780214|r 51 GSNTTVIVDTGPDFY--MQ---VLRE--QVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHL 118 (271) Q Consensus 51 ~~~~~iLiD~G~d~r--~q---l~~~--~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l 118 (271) ++++.|+||+|.... .+ +.+. +-+.|.+|++||.|.||++|...+..-........+||+++...+.. T Consensus 130 gddG~IVIDtg~s~e~A~aale~~~~~l~~kPV~aVI~TH~H~DH~GGa~~~~e~~~~~~~~~~IiA~~~~~~~~ 204 (658) T 2cfu_A 130 GDSGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFMEAA 204 (658) T ss_dssp CSSSEEEECCCSSHHHHHHHHHHHHHHHCCCCEEEEECSBSCHHHHTTGGGTCCHHHHHTTSSEEEEETTHHHHH T ss_pred ECCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCHHHHHCCCCCCCCCCEEEEECCHHHHH T ss_conf 399899997999989999999999986579984899989997010574798813542146774289734468997 No 53 >2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistance, structure, hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Probab=98.19 E-value=8.9e-07 Score=60.38 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=38.5 Q ss_pred CCEEEEEECCCC-HHHH-HHH---C-CCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEEC Q ss_conf 971899987984-1566-752---2-334205999974352422011102433317821110131120232100 Q gi|254780214|r 52 SNTTVIVDTGPD-FYMQ-VLR---E-QVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLF 119 (271) Q Consensus 52 ~~~~iLiD~G~d-~r~q-l~~---~-~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~ 119 (271) ++..+|+|+|.. ...+ +++ . .-+++++|++||.|.||++|+..++ +...+||+++...+.+. T Consensus 39 dg~viliD~~~~~~~~~~l~~~~~~~~~~~v~~II~TH~H~DH~Gg~~~~~------~~~~~i~a~~~~~~~~~ 106 (246) T 2fhx_A 39 DGTVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYK------KMGAETWSSDLTKQLRL 106 (246) T ss_dssp TSEEEEESCCSSHHHHHHHHHHHHHHHCCSEEEEECCSSSHHHHTTHHHHH------HTTCEEEEEHHHHHHHH T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHC------CCCCEEEECHHHHHHHH T ss_conf 987999999999899999999999745996699997999965348888852------47965885388889988 No 54 >1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 2bfz_A 2bg6_A 2bga_A ... Probab=98.06 E-value=2.6e-06 Score=57.50 Aligned_cols=66 Identities=27% Similarity=0.365 Sum_probs=41.5 Q ss_pred CEEEEEECCCCCCCEEEEEECCCCH--HHHHHH----CCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCE Q ss_conf 0699993367789718999879841--566752----2334205999974352422011102433317821110131120 Q gi|254780214|r 40 SSLKISRVSERGSNTTVIVDTGPDF--YMQVLR----EQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPD 113 (271) Q Consensus 40 ~s~~i~~~~~~~~~~~iLiD~G~d~--r~ql~~----~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~ 113 (271) .|.+|.. ++..+|||+|.+- -.++++ ....+|++||+||.|+||++|+..|+ +..++++.+.. T Consensus 42 N~~~I~~-----~~~~vlID~g~~~~~~~~l~~~i~~~~~~~v~~ii~TH~H~DH~gg~~~~~------~~~~~i~~~~~ 110 (227) T 1mqo_A 42 NGLVLNT-----SKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLK------ERGIKAHSTAL 110 (227) T ss_dssp EEEEEEE-----TTEEEEESCCSSHHHHHHHHHHHHHHHTSCEEEEECCCCSHHHHTTHHHHH------HHTCEEECBHH T ss_pred EEEEEEE-----CCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHH------HCCCEEEEECH T ss_conf 8999997-----999899949899899999999999744998169996789810235399997------47998999410 Q ss_pred EEE Q ss_conf 232 Q gi|254780214|r 114 CMK 116 (271) Q Consensus 114 ~~~ 116 (271) +.. T Consensus 111 ~~~ 113 (227) T 1mqo_A 111 TAE 113 (227) T ss_dssp HHH T ss_pred HHH T ss_conf 233 No 55 >2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Probab=97.53 E-value=0.00014 Score=46.68 Aligned_cols=104 Identities=6% Similarity=0.012 Sum_probs=55.0 Q ss_pred CCEEEEEECCCCHH---HHHHHCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCC Q ss_conf 97189998798415---667522334205999974352422011102433317821110131120232100222210136 Q gi|254780214|r 52 SNTTVIVDTGPDFY---MQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKA 128 (271) Q Consensus 52 ~~~~iLiD~G~d~r---~ql~~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~ 128 (271) ++.++|||+|+... .++. .+..+++|++||. ||+.|+..++. +...++|+++.....+.. T Consensus 32 ~~g~vlIDp~~~~~~~~~~l~--~~g~v~~iv~TH~--dH~g~~~~~~~-----~~~a~i~~~~~~~~~~~~-------- 94 (201) T 2p97_A 32 PEGNILIDPVALSNHDWKHLE--SLGGVVWIVLTNS--DHVRSAKEIAD-----QTYTKIAGPVAEKENFPI-------- 94 (201) T ss_dssp TTCCEEESCCCCCHHHHHHHH--HTTCCSEEECSSG--GGCTTHHHHHH-----HSCCEEEEEGGGTTSCSS-------- T ss_pred CCEEEEEECCCCCHHHHHHHH--HCCCCEEEEECCH--HHHHHHHHHHH-----HHCCCEEECCCCCCCCCC-------- T ss_conf 998599949988199999998--5699649998888--89889999999-----879909931421333567-------- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEECCCEECCCCCC-CCEEEECCCC Q ss_conf 67753100123211234433342011587489999995077621123346-8625303233 Q gi|254780214|r 129 LDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRF-GNVAYCTDVN 188 (271) Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~Hg~~~~~Gyri-~~~~Y~~Dt~ 188 (271) .+ ...+.. ..... .++++..++-.|.+.. +.|.. +++++++|+- T Consensus 95 ------~~---d~~~~d-----g~~~~-~g~~vi~~pG~Ht~g~-v~~~~~~~~Lf~GD~l 139 (201) T 2p97_A 95 ------YC---DRWLSD-----GDELV-PGLKVMELQGSKTPGE-LALLLEETTLITGDLV 139 (201) T ss_dssp ------CC---SEEECT-----TCBSS-TTEEEEEECSSSSTTE-EEEEETTTEEEECSSE T ss_pred ------CC---CEEECC-----CCEEE-EEEEEEEECCCCCCCC-CCEEECCCEEEECCEE T ss_conf ------89---888426-----88865-0179999478889998-4333035639989881 No 56 >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP: d.157.1.10 Probab=85.02 E-value=0.36 Score=25.51 Aligned_cols=50 Identities=22% Similarity=0.121 Sum_probs=37.2 Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEECCEEEE Q ss_conf 875799999999997299779997688898888999867998199020448996 Q gi|254780214|r 215 SSHFSLSESLKKIELINPKNAILTHMHVDLDYDMVLKSTPSRVVPAFDGMQFSS 268 (271) Q Consensus 215 ~~H~~~~ea~~~~~~~~~k~~~LtHls~~~~~~~~~~~~~~~v~~A~DGm~i~l 268 (271) -+|.+.+|..++++.++||++++.|= ++.+..+....++.+..+|-.|+| T Consensus 380 SgHA~~~eL~~~i~~l~Pk~vipvHg----~~~e~~~~~~~~~~ip~~Ge~i~l 429 (429) T 2az4_A 380 SGHAIPEDLDKIIALIEPQVLVPIHT----LKPEKLENPYGERILPERGEQIVL 429 (429) T ss_dssp CSSCCHHHHHHHHHHHCCSEEEEESC----SCGGGCCCTTSEECCCCTTCEEEC T ss_pred ECCCCHHHHHHHHHHHCCCEEEEECC----CCHHHHHCCCCCEEECCCCCEEEC T ss_conf 07989999999999739899999589----858774185687898699999979 No 57 >2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima} Probab=59.50 E-value=7.9 Score=17.19 Aligned_cols=10 Identities=20% Similarity=0.179 Sum_probs=6.3 Q ss_pred CCCCCEEEEE Q ss_conf 3420599997 Q gi|254780214|r 73 VLSIDAVLYT 82 (271) Q Consensus 73 i~~Id~I~iT 82 (271) ++++|.|+.+ T Consensus 48 ~~~~D~iih~ 57 (178) T 2kkn_A 48 LKEYDGVIGL 57 (178) T ss_dssp GGGCSEEEES T ss_pred HCCCCEEEEC T ss_conf 4478999999 No 58 >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 Probab=52.60 E-value=5.2 Score=18.32 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=8.8 Q ss_pred EEEEEEEEECC Q ss_conf 25999985417 Q gi|254780214|r 4 YYHFTILGCGA 14 (271) Q Consensus 4 ~m~l~~LGtg~ 14 (271) .|+|.+||||+ T Consensus 1 Mm~I~Vlg~gC 11 (77) T 1ilo_A 1 MMKIQIYGTGC 11 (77) T ss_dssp CEEEEEECSSS T ss_pred CCEEEEECCCC T ss_conf 95899976999 No 59 >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P)binding protein, rossmann fold; HET: NAP; 2.15A {Streptococcus pyogenes m1 gas} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Probab=42.12 E-value=7.1 Score=17.48 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=11.6 Q ss_pred CCEEEEEEEEECC Q ss_conf 8725999985417 Q gi|254780214|r 2 KDYYHFTILGCGA 14 (271) Q Consensus 2 ~~~m~l~~LGtg~ 14 (271) ++.|||.|+|+|. T Consensus 1 ~~~MkIg~IG~G~ 13 (259) T 2ahr_A 1 SNAMKIGIIGVGK 13 (259) T ss_dssp --CCEEEEECCSH T ss_pred CCCCEEEEECCCH T ss_conf 9988899988849 No 60 >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* Probab=39.42 E-value=16 Score=15.22 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=31.4 Q ss_pred HHHHHHHHHHCCC--CEEEEECCCCCCCHHHHHHHCCCCCEEEEECC Q ss_conf 9999999997299--77999768889888899986799819902044 Q gi|254780214|r 220 LSESLKKIELINP--KNAILTHMHVDLDYDMVLKSTPSRVVPAFDGM 264 (271) Q Consensus 220 ~~ea~~~~~~~~~--k~~~LtHls~~~~~~~~~~~~~~~v~~A~DGm 264 (271) ..|.+++.++.++ +|+++.|+.-..+.+...+.+..++.+++||. T Consensus 199 a~e~l~iL~e~g~~~~rvvi~H~d~~~d~~~~~~~l~~G~~l~fD~~ 245 (339) T 3gtx_A 199 GPQQAELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIAFDRI 245 (339) T ss_dssp HHHHHHHHHHTTCCGGGEEECCGGGCCCHHHHHHHHTTTCEEEECCT T ss_pred CHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCC T ss_conf 78999999876999643699804786789999999976938997556 No 61 >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Probab=30.90 E-value=10 Score=16.46 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=16.4 Q ss_pred CCCEEEEEEEEECCCCCEECC Q ss_conf 987259999854178965133 Q gi|254780214|r 1 MKDYYHFTILGCGASLGVPRI 21 (271) Q Consensus 1 m~~~m~l~~LGtg~s~g~P~~ 21 (271) |...|||-|+|.|. .|.|.. T Consensus 1 m~~~MkIg~IGlG~-MG~~mA 20 (301) T 3cky_A 1 MEKSIKIGFIGLGA-MGKPMA 20 (301) T ss_dssp ---CCEEEEECCCT-THHHHH T ss_pred CCCCCEEEEEEHHH-HHHHHH T ss_conf 99889899980278-899999 No 62 >2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 2hl1_A* Probab=30.56 E-value=23 Score=14.33 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=21.2 Q ss_pred HHHHHHHHHHCCCCEEEEE---CCCCCCC Q ss_conf 9999999997299779997---6888988 Q gi|254780214|r 220 LSESLKKIELINPKNAILT---HMHVDLD 245 (271) Q Consensus 220 ~~ea~~~~~~~~~k~~~Lt---Hls~~~~ 245 (271) +++..++++++++++++|. |+|.++. T Consensus 61 v~eI~~~a~kv~~~~ivlYPyAHLSs~La 89 (143) T 2hl0_A 61 IEEISKVAEQVKAENVFVYPFAHLSSELA 89 (143) T ss_dssp HHHHHHHHHHHTCCEEEEEECGGGCSSBC T ss_pred HHHHHHHHHHCCCCEEEEECCHHCCCCCC T ss_conf 99999999864998799937111168778 No 63 >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Probab=29.82 E-value=23 Score=14.25 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=38.4 Q ss_pred CEEEECCCCCCHHHHHHHHCCHHEEEEECCCCCCCCCCCCHHHHHHHHHHC----CCCEEEEECCCCCCCHHHHHHHCC Q ss_conf 625303233001678886222110253023357688757999999999972----997799976888988889998679 Q gi|254780214|r 180 NVAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELI----NPKNAILTHMHVDLDYDMVLKSTP 254 (271) Q Consensus 180 ~~~Y~~Dt~~~~e~~~~~l~~~D~lI~d~l~~~~~~~H~~~~ea~~~~~~~----~~k~~~LtHls~~~~~~~~~~~~~ 254 (271) ++.|+||-. +-.+....+.+.+++|+|-..+. -...+-.+.+.+++ .--|+++ ||-.++.+.+.+.++ T Consensus 157 ~i~y~T~g~-lLr~~~~~L~~~s~IIiDEvHER----s~~tD~lL~llk~~~~~~~~lklIl--mSATld~~~f~~yF~ 228 (235) T 3llm_A 157 SIMFCTVGV-LLRKLEAGIRGISHVIVDEIHER----DINTDFLLVVLRDVVQAYPEVRIVL--MSATIDTSMFCEYFF 228 (235) T ss_dssp EEEEEEHHH-HHHHHHHCCTTCCEEEECCTTSC----CHHHHHHHHHHHHHHHHCTTSEEEE--EECSSCCHHHHHHTT T ss_pred EEEECCCCE-EEECCCCCCCCCCCEECCHHHHC----CHHHHHHHHHHHHHHHHCCCCEEEE--ECCCCCHHHHHHHCC T ss_conf 478603020-00011034555312000057644----6138999999999997789967999--768789699998769 No 64 >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initiative; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Probab=28.52 E-value=17 Score=15.07 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=15.8 Q ss_pred CCCEEEEEEEEECCCCCEECC Q ss_conf 987259999854178965133 Q gi|254780214|r 1 MKDYYHFTILGCGASLGVPRI 21 (271) Q Consensus 1 m~~~m~l~~LGtg~s~g~P~~ 21 (271) |+..|||+|.|.|+ .++|.. T Consensus 4 m~k~~KI~iIGaGS-~~~~~~ 23 (450) T 1s6y_A 4 MDKRLKIATIGGGS-SYTPEL 23 (450) T ss_dssp ---CEEEEEETTTC-TTHHHH T ss_pred CCCCCEEEEECCCH-HHHHHH T ss_conf 76788699999875-678999 No 65 >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.50A {Geobacter metallireducens gs-15} Probab=27.05 E-value=15 Score=15.54 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=11.2 Q ss_pred CCCEEEEEEEEECCCC Q ss_conf 9872599998541789 Q gi|254780214|r 1 MKDYYHFTILGCGASL 16 (271) Q Consensus 1 m~~~m~l~~LGtg~s~ 16 (271) |+ |||.++|.|+-+ T Consensus 1 m~--MkI~ViGaGaiG 14 (312) T 3hn2_A 1 MS--LRIAIVGAGALG 14 (312) T ss_dssp -----CEEEECCSTTH T ss_pred CC--CEEEEECCCHHH T ss_conf 98--889999928999 No 66 >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoreductase, structural genomics consortium; HET: NAP; 2.30A {Plasmodium falciparum 3D7} Probab=24.82 E-value=19 Score=14.89 Aligned_cols=12 Identities=17% Similarity=0.484 Sum_probs=10.0 Q ss_pred CEEEEEEEEECC Q ss_conf 725999985417 Q gi|254780214|r 3 DYYHFTILGCGA 14 (271) Q Consensus 3 ~~m~l~~LGtg~ 14 (271) +.|||-|+|+|. T Consensus 3 ~~MkIgfIG~G~ 14 (262) T 2rcy_A 3 ENIKLGFMGLGQ 14 (262) T ss_dssp SSSCEEEECCSH T ss_pred CCCEEEEECCCH T ss_conf 888899988689 No 67 >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} Probab=24.60 E-value=19 Score=14.86 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=11.1 Q ss_pred CCCEEEEEEEEECCCC Q ss_conf 9872599998541789 Q gi|254780214|r 1 MKDYYHFTILGCGASL 16 (271) Q Consensus 1 m~~~m~l~~LGtg~s~ 16 (271) |+ |||.++|.|+-+ T Consensus 1 m~--MkI~IiGaGaiG 14 (307) T 3ego_A 1 MS--LKIGIIGGGSVG 14 (307) T ss_dssp -C--CEEEEECCSHHH T ss_pred CC--CEEEEECCCHHH T ss_conf 99--889999965999 No 68 >2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil reductase; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2 Probab=23.85 E-value=30 Score=13.58 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=9.6 Q ss_pred CCCHHHHHHHHHHCCCCEEEE Q ss_conf 579999999999729977999 Q gi|254780214|r 217 HFSLSESLKKIELINPKNAIL 237 (271) Q Consensus 217 H~~~~ea~~~~~~~~~k~~~L 237 (271) +.++.++++...+.+.+++++ T Consensus 128 ~~dl~~~l~~L~~~g~~~vlv 148 (219) T 2azn_A 128 KVDLKKLMDILYDKGIKSILL 148 (219) T ss_dssp SCCHHHHHHHHHHTTCCEEEE T ss_pred CCCHHHHHHHHHHCCCCEEEE T ss_conf 879999999998779978998 No 69 >1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* Probab=22.29 E-value=31 Score=13.54 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=14.0 Q ss_pred CCEEEEEEEEECCCCCEECC Q ss_conf 87259999854178965133 Q gi|254780214|r 2 KDYYHFTILGCGASLGVPRI 21 (271) Q Consensus 2 ~~~m~l~~LGtg~s~g~P~~ 21 (271) |+.|||.|+||. .+++|.+ T Consensus 1 ~~~mkI~f~Gs~-~~a~~~L 19 (314) T 1fmt_A 1 SESLRIIFAGTP-DFAARHL 19 (314) T ss_dssp CCCCEEEEEECS-HHHHHHH T ss_pred CCCCEEEEECCC-HHHHHHH T ss_conf 996289998898-8999999 No 70 >3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482} Probab=22.16 E-value=32 Score=13.37 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=14.7 Q ss_pred CCCHHHHHHHHHHCCCCE-EEEECCCCC Q ss_conf 579999999999729977-999768889 Q gi|254780214|r 217 HFSLSESLKKIELINPKN-AILTHMHVD 243 (271) Q Consensus 217 H~~~~ea~~~~~~~~~k~-~~LtHls~~ 243 (271) ..+.++.+++.-++-.|. .+|--+.++ T Consensus 293 ~kS~~eLi~~l~~sVsknGNLLLNVgP~ 320 (443) T 3gza_A 293 IYPLNTLMDKYEKSVGRNATLILGLTPD 320 (443) T ss_dssp SCCHHHHHHHHHTTTTBTCEEEEEECCC T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 2899999999999967797699812868 No 71 >2qyt_A 2-dehydropantoate 2-reductase; APC81190, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Porphyromonas gingivalis W83} Probab=21.44 E-value=25 Score=14.07 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=12.3 Q ss_pred CCCE-EEEEEEEECCCC Q ss_conf 9872-599998541789 Q gi|254780214|r 1 MKDY-YHFTILGCGASL 16 (271) Q Consensus 1 m~~~-m~l~~LGtg~s~ 16 (271) |+.. |||.++|.|+-+ T Consensus 4 ~~~~~MkI~IlGaGaiG 20 (317) T 2qyt_A 4 MNQQPIKIAVFGLGGVG 20 (317) T ss_dssp ---CCEEEEEECCSHHH T ss_pred CCCCCCEEEEECCCHHH T ss_conf 78999989999968999 Done!