RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780214|ref|YP_003064627.1| metal-dependent hydrolase
protein [Candidatus Liberibacter asiaticus str. psy62]
(271 letters)
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB
{Pseudomonas putida [TaxId: 303]}
Length = 304
Score = 119 bits (299), Expect = 2e-28
Identities = 47/313 (15%), Positives = 84/313 (26%), Gaps = 67/313 (21%)
Query: 8 TILGCGASLGVPRITGDWGAC----DPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPD 63
+LG A G P+ + C D T RT+SS+ + ++ + PD
Sbjct: 4 QVLGSAAGGGFPQWNCNCVNCKGYRDGTLKATARTQSSIAL----SDDGVHWILCNASPD 59
Query: 64 FYMQVL---------REQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDC 114
Q+ + I+A++ DH G+ LR + P V+
Sbjct: 60 IRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLR-----EGCPHQVWCTDMV 114
Query: 115 MKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSL 174
+ L F L N I +E + V A ++ P +
Sbjct: 115 HQDLTTGFPLFNM-LSHWNGGLQWNRIELEGSFVI----DACPNLKFTPFPLRSAAPPYS 169
Query: 175 GFRFGNVAYCTDVNAFPAES-----------------------------LEKLQNLDFLI 205
RF ++ D +
Sbjct: 170 PHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLVDGTLWEDDEM 229
Query: 206 IDA------LKNGLHSSHFSLSESLKKIELINPKNAILTHM-----HVDLDYDMVLKSTP 254
+ H + L+ ++ + +L H+ +D + +
Sbjct: 230 QRRGVGTRTGREMGHLAQNGPGGMLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLR 289
Query: 255 SRVVPAFDGMQFS 267
V AFDGM
Sbjct: 290 RGVEVAFDGMSIE 302
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016)
{Bacillus anthracis [TaxId: 1392]}
Length = 244
Score = 74.0 bits (180), Expect = 1e-14
Identities = 37/271 (13%), Positives = 78/271 (28%), Gaps = 38/271 (14%)
Query: 7 FTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYM 66
T++G P+ S ++VD G
Sbjct: 3 MTVVGFWGGF----------------PEAGEATSGYLF-----EHDGFRLLVDCGSGVLA 41
Query: 67 QVLREQVLSI-DAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYC 125
Q+ + S DAV+ +H H DH+ I L+ L H F+ +
Sbjct: 42 QLQKYITPSDIDAVVLSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFDENGFH 101
Query: 126 FKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGNVAYCT 185
+ T NP + + + ++ +
Sbjct: 102 SLTHEPHTKGIPYNPEETLQIGPFSI--------SFLKTVHPVTCFAMRITAGNDIVVYS 153
Query: 186 DVNAFPAESLEKLQNLDFLIIDAL----KNGLHSSHFSLSESLKKIELINPKNAILTHMH 241
+++ E + ++ D I + + + H + +E + N K +LTH+
Sbjct: 154 ADSSYIPEFIPFTKDADLFICECNMYAHQEAAKAGHMNSTEVASIAKDANVKELLLTHLP 213
Query: 242 VDLDYDMVL----KSTPSRVVPAFDGMQFSS 268
+ ++ + + A G ++S
Sbjct: 214 HTGNPADLVTEAKQIFSGHITLAHSGYVWNS 244
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus
subtilis [TaxId: 1423]}
Length = 307
Score = 67.4 bits (163), Expect = 1e-12
Identities = 52/321 (16%), Positives = 89/321 (27%), Gaps = 76/321 (23%)
Query: 7 FTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYM 66
LG GA + P R +S+ + + ER S + D G
Sbjct: 3 LLFLGTGAGI----------------PAKARNVTSVALKLLEERRSV--WLFDCGEATQH 44
Query: 67 QVLREQV--LSIDAVLYTHPHADHIHGIDGLRGYFLKQKR--PIDVYAAPDCMKHLFESF 122
Q+L + I+ + TH H DH++G+ GL G Q + VY + S
Sbjct: 45 QMLHTTIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSL 104
Query: 123 RYCFKALDDR-TYPPIVNPIVIENNDVPICMKS--------------------------- 154
L I IV E++ + S
Sbjct: 105 AVTKTHLTYPLAIQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLK 164
Query: 155 --------------AGGVIEAIPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQN 200
G + +G + G + + E ++
Sbjct: 165 EMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELARD 224
Query: 201 LDFLIIDALKNGLHSS------HFSLSESLKKIELINPKNAILTHMHVDLDYDMVL---- 250
D ++ +A H + ++ + K ILTH+ D L
Sbjct: 225 CDVMVHEATFAKEDRKLAYDYYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQK 284
Query: 251 --KSTPSRVVPAFDGMQFSSP 269
V A+D ++ + P
Sbjct: 285 EAVDVFPNSVAAYDFLEVNVP 305
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia
coli [TaxId: 562]}
Length = 305
Score = 55.5 bits (132), Expect = 4e-09
Identities = 43/320 (13%), Positives = 82/320 (25%), Gaps = 75/320 (23%)
Query: 6 HFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFY 65
+ LG A + P R +++ + + + + D G
Sbjct: 2 NLIFLGTSAGV----------------PTRTRNVTAILL-NLQHPTQSGLWLFDCGEGTQ 44
Query: 66 MQVLREQV--LSIDAVLYTHPHADHIHGIDGLRGYFLKQKRP-IDVYAAPDCMKHLFESF 122
Q+L +D + +H H DH+ G+ GL P ++ E+
Sbjct: 45 HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETA 104
Query: 123 RYCFKAL------------------DDRTYPPIVNPIVIENNDVPICMKSAGGV------ 158
+ R +E I A G
Sbjct: 105 LRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDAPGALNAQAL 164
Query: 159 ----IEAIPILQQHGRISSLGFRFGNVAYCTDVNAFPAES---------------LEKLQ 199
+ P+ Q+ ++ G D A P L+ +
Sbjct: 165 KAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAALDLAK 224
Query: 200 NLDFLIIDALKNGLHSS------HFSLSESLKKIELINPKNAILTHMHVDLDYDMV---- 249
+D ++ +A + + H S ++ I+TH+ D
Sbjct: 225 GVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLL 284
Query: 250 --LKSTPSRVVPAFDGMQFS 267
+S A D F+
Sbjct: 285 RECRSIFPATELANDFTVFN 304
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 51.3 bits (121), Expect = 8e-08
Identities = 32/225 (14%), Positives = 69/225 (30%), Gaps = 41/225 (18%)
Query: 56 VIVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGL---RGYFLKQKRPIDVYAAP 112
++ D G L +V + V TH H DHI G+ G+ R + + P
Sbjct: 22 ILFDAGEGVSTT-LGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYP 80
Query: 113 DCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAI------PILQ 166
+ + + E + +A D + V+P+ ++ +
Sbjct: 81 EGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVS 140
Query: 167 QHGRISSLGFRFGNVAYCTDVNAFP---------------------------AESLEKLQ 199
I + + D A E+++
Sbjct: 141 FGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYHKKVLTISGDSLALDPEEIR 200
Query: 200 NLDFLIIDA----LKNGLHSSHFSLSESLKKIELINPKNAILTHM 240
+ LI + ++ + +H ++ E ++ ++ K IL H+
Sbjct: 201 GTELLIHECTFLDARDRRYKNHAAIDEVMESVKAAGVKKVILYHI 245
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904
{Enterococcus faecalis [TaxId: 1351]}
Length = 183
Score = 48.5 bits (114), Expect = 6e-07
Identities = 14/156 (8%), Positives = 40/156 (25%), Gaps = 6/156 (3%)
Query: 56 VIVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCM 115
+ D + ++ AV +H H DH I+ L
Sbjct: 10 DLYDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKE---TKMILN 66
Query: 116 KHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLG 175
+ +++ + + + + + ++ I +
Sbjct: 67 SLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPD 126
Query: 176 FRF---GNVAYCTDVNAFPAESLEKLQNLDFLIIDA 208
G++ EK ++ + L+++
Sbjct: 127 HFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEG 162
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894
{Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 46.3 bits (108), Expect = 3e-06
Identities = 33/212 (15%), Positives = 57/212 (26%), Gaps = 31/212 (14%)
Query: 7 FTILGCGASLGVP-RITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFY 65
IL G ++ VP R+ + V + +I+D G
Sbjct: 3 LKILVTGGNVFVPGRLNAHFSTV------------------VYLEHKDRRIIIDPGNLSS 44
Query: 66 MQVLREQV-------LSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHL 118
M L E+ I VL+TH H DHI +
Sbjct: 45 MDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFENATFYVHEVYKTKNYLSFGTIV 104
Query: 119 FESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRF 178
+ + + + E V A + + + GR+ G
Sbjct: 105 GRIYSKVISSWKNVVLLKGEESLFDEKVKVFHTPWHAREHLSFLLDTENAGRVLITGDIT 164
Query: 179 GNVAYCTDVNAFPA-----ESLEKLQNLDFLI 205
N D+ L+++ +D L+
Sbjct: 165 PNRLSYYDIIKGYGSVQVKNFLDRVGRIDLLV 196
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 505
Score = 45.1 bits (106), Expect = 7e-06
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 50 RGSNTTVIVDTGPD------FYMQVLRE-QVLSIDAVLYTHPHADHIHGIDGLRGYFLKQ 102
RG + ++VDT Y V RE I V+Y+H HADH G+ GL
Sbjct: 110 RGDSGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVA 169
Query: 103 KRPIDVYAAPDCMKHLFESFRYCFKALDDR 132
+ + A M+ + A+ R
Sbjct: 170 SGAVQIIAPAGFMEAAIKENVLAGNAMMRR 199
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 44.2 bits (103), Expect = 1e-05
Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 22/135 (16%)
Query: 53 NTTVIVDTGPDF------YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPI 106
V++D G +DAVL TH H DH+ + ++
Sbjct: 23 GRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRL----PKLFREGYRG 78
Query: 107 DVYAAP-------DCMKHLFESFRYCFKALDD-----RTYPPIVNPIVIENNDVPICMKS 154
VYA ++ + F +D P+ + + +
Sbjct: 79 PVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQ 138
Query: 155 AGGVIEAIPILQQHG 169
AG + + ++ Q
Sbjct: 139 AGHLPGSAFVVAQGE 153
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 250
Score = 42.9 bits (100), Expect = 3e-05
Identities = 18/196 (9%), Positives = 50/196 (25%), Gaps = 19/196 (9%)
Query: 50 RGSNTTVIVDTGPDFYMQVLREQVLS------IDAVLYTHPHADHIHGIDGLRGYFLKQK 103
+ + V++D Y + + + I ++ H DH +
Sbjct: 46 KLNGANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPAT---LKTIG 102
Query: 104 RPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIP 163
+++ A+ + L + + + + P V
Sbjct: 103 HDVEIIASNFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTYLDG 162
Query: 164 ILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSES 223
IL G ++ + ++ + + + + E
Sbjct: 163 IL--------FSCDVGGGYLLPEI--LDDSNESVVERYLPHVTKYIVTVIGHYKNYILEG 212
Query: 224 LKKIELINPKNAILTH 239
+K+ + K + H
Sbjct: 213 AEKLSSLKIKALLPGH 228
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 41.0 bits (95), Expect = 1e-04
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 53 NTTVIVDTG-------PDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGL-RGYFLKQKR 104
N T+++D G + ++ + + ID ++ + P + + L +
Sbjct: 24 NVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFIS 83
Query: 105 PIDVYAAP 112
I VYA
Sbjct: 84 RIQVYATL 91
Score = 25.9 bits (56), Expect = 3.2
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 204 LIIDALKNGLHSSHFSLSESLKKIELINPK-NAI-LTHMHVD 243
L+ID G + S S + +K E + P+ + I L+ ++
Sbjct: 27 LLIDP---GWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIE 65
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
specificity factor subunit 3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 451
Score = 39.8 bits (91), Expect = 2e-04
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 7/80 (8%)
Query: 53 NTTVIVDTGPDFYMQVLRE-------QVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRP 105
+++D G ++ + ID +L +H H DH + + R
Sbjct: 26 GRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRT 85
Query: 106 IDVYAAPDCMKHLFESFRYC 125
+A + L +
Sbjct: 86 FMTHATKAIYRWLLSDYVKV 105
Score = 24.7 bits (52), Expect = 7.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 215 SSHFSLSESLKKIELINPKNAILTH 239
S+H ++ + I + P + IL H
Sbjct: 386 SAHTDYQQTSEFIRALKPPHVILVH 410
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 260
Score = 39.5 bits (91), Expect = 3e-04
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Query: 47 VSERGSNTTVIVDTG-PDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRP 105
V + + IVD P + R+ + + VL TH H DH G + L K
Sbjct: 17 VIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVY 76
Query: 106 IDVYAAPDCMKHLFESFRYCFKAL 129
+ +L
Sbjct: 77 GGDDRIGALTHKITHLSTLQVGSL 100
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
esterase Pce (LytD), N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 305
Score = 39.2 bits (90), Expect = 4e-04
Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 17/208 (8%)
Query: 46 RVSERGSNTTVIVDTGPDFYMQVLREQ-VLSIDAVLYTHPHADHIHGIDGL-----RGYF 99
R R T D + L+E V +D +L TH H+DHI +D L
Sbjct: 43 RYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLSTYPVDRV 102
Query: 100 LKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNP------IVIENNDVPICMK 153
+K + + + + + I N + D+ +
Sbjct: 103 YLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSVIQNITQGDAHFQFGDMDIQLYNY 162
Query: 154 SAGGVIEAIPILQQHGRISSLGFRF---GNVAYCTDVNAFPAESLEKLQNLDFLIIDALK 210
+SL G Y + +K L +
Sbjct: 163 ENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAEDKYGPLIGKVDLMKF 222
Query: 211 NGLHSSHFSLSESLKKIELINPKNAILT 238
N H ++ S ++ I+ ++P + T
Sbjct: 223 NHHHDTNKSNTKDF--IKNLSPSLIVQT 248
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp.
WBC-3 [TaxId: 165468]}
Length = 294
Score = 39.2 bits (90), Expect = 4e-04
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 50 RGSNTTVIVDTGPDFYMQVLREQVLS-----------IDAVLYTHPHADHIHGIDGLRGY 98
+ V+VDTG ++ + +D + TH H DH+ G+
Sbjct: 68 NTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLM----V 123
Query: 99 FLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYP 135
+ P V A + S KA DD +
Sbjct: 124 GEQLAFPNAVVRADQKEADFWLSQTNLDKAPDDESKG 160
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 298
Score = 36.1 bits (82), Expect = 0.003
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 11/91 (12%)
Query: 51 GSNTTVIVDTGPDFYMQVLREQVLS-------IDAVLYTHPHADHIHGIDGLRGYFLKQK 103
G + +V+ G +++ + + L TH H DH + Y +
Sbjct: 30 GEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLL----PYLCPRL 85
Query: 104 RPIDVYAAPDCMKHLFESFRYCFKALDDRTY 134
+ V A+ + +R
Sbjct: 86 PNVQVLASERTCQAWKSESAVRVVERLNRQL 116
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 264
Score = 35.4 bits (80), Expect = 0.005
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 12/110 (10%)
Query: 50 RGSNTTVIVDTGPDFYMQVLREQV-------LSIDAVLYTHPHADHIHGIDGLRGYFLKQ 102
+ S +++DT ++++ + I +L TH H DH G +K+
Sbjct: 33 KTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFA-----EIKK 87
Query: 103 KRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICM 152
+ + A L + + +D +P + ++ D
Sbjct: 88 ETGAQLVAGERDKPLLEGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLG 137
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO),
N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Length = 249
Score = 34.9 bits (79), Expect = 0.007
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 10/82 (12%)
Query: 51 GSNTTVIVDTGPDFYMQVLREQVLS------IDAVLYTHPHADHIHGIDGLRGYFLKQKR 104
T + DT Y L + S ID ++ H DH + ++ +
Sbjct: 40 EDEKTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALP----ALIEACQ 95
Query: 105 PIDVYAAPDCMKHLFESFRYCF 126
P ++ + K + F Y
Sbjct: 96 PEKIFTSSLGQKAMESHFHYKD 117
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus
[TaxId: 1396]}
Length = 221
Score = 34.1 bits (77), Expect = 0.012
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 11/90 (12%)
Query: 50 RGSNTTVIVDTG--PDFYMQVLRE----QVLSIDAVLYTHPHADHIHGIDGLRGYFLKQK 103
S V+VD+ +++ + V+ TH HAD I GI LK++
Sbjct: 41 NTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIK-----TLKER 95
Query: 104 RPIDVYAAPDCMKHLFESFRYCFKALDDRT 133
A + L T
Sbjct: 96 GIKAHSTALTAELAKKNGYEEPLGDLQTVT 125
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas
hydrophila, CphA [TaxId: 644]}
Length = 228
Score = 33.4 bits (75), Expect = 0.020
Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 8/108 (7%)
Query: 51 GSNTTVIVDTGPD-FYMQVLREQVLSID-----AVLYTHPHADHIHGIDGLRGYFLKQKR 104
G+ +V + L + + + V+ T+ H D G + K
Sbjct: 30 GAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVS 89
Query: 105 PIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICM 152
+F L + P+V P V+ + D +
Sbjct: 90 TRQTRDLMKSDWAEIVAFTRKG--LPEYPDLPLVLPNVVHDGDFTLQE 135
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal
domain {Moorella thermoacetica [TaxId: 1525]}
Length = 249
Score = 33.0 bits (74), Expect = 0.024
Identities = 11/89 (12%), Positives = 25/89 (28%), Gaps = 6/89 (6%)
Query: 51 GSNTTVIVDTGPDFYMQVLREQV------LSIDAVLYTHPHADHIHGIDGLRGYFLKQKR 104
+ T +VDT + + + L ++ + +D ++ H +DH +
Sbjct: 42 VDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHV 101
Query: 105 PIDVYAAPDCMKHLFESFRYCFKALDDRT 133
A H +
Sbjct: 102 LCTQRAFDSLKAHYSHIDFNYTIVKTGTS 130
>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli
[TaxId: 562]}
Length = 221
Score = 31.9 bits (72), Expect = 0.058
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 191 PAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHMHVDLDYDMVL 250
P+ S E + L+ L+ L + +K + I+ +++DL D L
Sbjct: 1 PSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADD-SL 59
Query: 251 KSTPSRVVPAFDGMQFS 267
TP R+ + FS
Sbjct: 60 METPHRIAKMYVDEIFS 76
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides
fragilis [TaxId: 817]}
Length = 230
Score = 31.9 bits (71), Expect = 0.063
Identities = 21/158 (13%), Positives = 40/158 (25%), Gaps = 11/158 (6%)
Query: 50 RGSNTTVIVDTGPDFYM------QVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQK 103
++ ++DT + V + + H H D I G GY K+
Sbjct: 41 INNHQAALLDTPINDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIGG----LGYLQKKG 96
Query: 104 RPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIP 163
+ D T P+ + +
Sbjct: 97 VQSYANQMTIDLAKEKGLPVPEHGFTDSLTVSLDGMPLQCYYLGGGHATDNIVVWLPTEN 156
Query: 164 ILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQNL 201
IL + DV A+ ++L+K++
Sbjct: 157 ILFGGCMLKDNQATSIGNISDADVTAW-PKTLDKVKAK 193
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas
aeruginosa, VIM-2 [TaxId: 287]}
Length = 230
Score = 31.5 bits (70), Expect = 0.074
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 50 RGSNTTVIVDTGPD------FYMQVLREQVLSIDAVLYTHPHADHIHGIDGLR 96
R + +++DT ++ ++ L + + TH H D + G+D LR
Sbjct: 44 RDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLR 96
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter
gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}
Length = 262
Score = 31.1 bits (69), Expect = 0.099
Identities = 8/101 (7%), Positives = 32/101 (31%), Gaps = 12/101 (11%)
Query: 50 RGSNTTVIVDTGPDFYMQVLREQVLS-------IDAVLYTHPHADHIHGIDGLRGYFLKQ 102
+++++ + + +++ + +L +H H DH G + ++
Sbjct: 30 VTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQT--- 86
Query: 103 KRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVI 143
+ + + + F +D + + +
Sbjct: 87 --KAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDK 125
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 26.0 bits (56), Expect = 3.2
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 200 NLDFL---IIDALKNGLHSSHFSLSESLKKIELINPK-NAILT 238
+LDF I + LK SL+ I+ ++P A ++
Sbjct: 3 DLDFRKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFIS 45
>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 26.1 bits (57), Expect = 3.4
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 200 NLDFLIIDALKNGLHSSHFSLSESLKKIELINPKN 234
++F+ IDA K G H+ + ++ E + +
Sbjct: 48 LMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTE 82
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC
{Lactococcus lactis [TaxId: 1358]}
Length = 409
Score = 25.2 bits (54), Expect = 5.7
Identities = 14/77 (18%), Positives = 26/77 (33%)
Query: 44 ISRVSERGSNTTVIVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQK 103
I + E ++D+ + +RE++ + T P D I G+ G+ Y L
Sbjct: 92 ILHLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLLIN 151
Query: 104 RPIDVYAAPDCMKHLFE 120
+ L
Sbjct: 152 DEQYDDLKILIINFLSN 168
>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central
domain {Clostridium symbiosum [TaxId: 1512]}
Length = 133
Score = 25.0 bits (54), Expect = 6.9
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 127 KALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGNVAYCTD 186
KA ++ I+ + D+ A G++ + H + + G V+ C +
Sbjct: 39 KAAHEKGERVILVRLETSPEDIEGMHA-AEGILTVRGGMTSHAAVVARGMGTCCVSGCGE 97
Query: 187 VNAFPAE 193
+
Sbjct: 98 IKINEEA 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.427
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,080,954
Number of extensions: 50399
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 40
Length of query: 271
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,254,276
Effective search space: 234549612
Effective search space used: 234549612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)