HHsearch alignment for GI: 254780215 and conserved domain: PRK11449
>PRK11449 putative deoxyribonuclease YjjV; Provisional.
Probab=100.00 E-value=0 Score=539.03 Aligned_cols=251 Identities=29% Similarity=0.500 Sum_probs=237.7
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 16861388875652268999999998699899991679877899999998557233211244544334467889988531
Q gi|254780215|r 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVC 81 (262)
Q Consensus 2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~ 81 (262)
T Consensus 5 ~iDtH~HL~~~~~~~d~~~vi~~a~~~gv~~i~~~g~~~~~~~~~~~l~~~~~~-i~~~vGiHP~~~~~~~~~~~~~l~~ 83 (258)
T PRK11449 5 FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAANFARVLALAERYQP-LYAALGLHPGMLEKHSDVSLDQLQQ 83 (258)
T ss_pred EEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC-CEEECCCCCCHHHCCCCCCHHHHHH
T ss_conf 798611799815476999999999982999999934999999999999875963-0187058976111057005999999
Q ss_pred HCC-C-CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCC
Q ss_conf 001-3-33210044677553322111024678999987664204420330002333579998531000367533112146
Q gi|254780215|r 82 LAS-H-PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSS 159 (262)
Q Consensus 82 l~~-~-~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG 159 (262)
T Consensus 84 ~l~~~~~~vvaIGEiGLDy~~~~~~~~~Q~~~F~~ql~lA~~~~lPvviH~R~A~~~~~~~l~~~--~~~~~gi~H~FsG 161 (258)
T PRK11449 84 ALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRH--DLPRTGVVHGFSG 161 (258)
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHC--CCCCCCEEEECCC
T ss_conf 99818787899834564778899869999999999999999849975986221379999999855--8885754762789
Q ss_pred CHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 40234432103520202332211333223333210566717983078667877768875882449999999998728998
Q gi|254780215|r 160 SQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSY 239 (262)
Q Consensus 160 ~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~ 239 (262)
T Consensus 162 ~~~~a~~~l~~G~yiS~~g~it~~~~~~~~~~v~~iPldrll~ETDsPyl~p~~~rg~~NeP~~i~~v~~~iA~ik~~~~ 241 (258)
T PRK11449 162 SLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDVLCELRPEPA 241 (258)
T ss_pred CHHHHHHHHHCCCEEEECEEEECCCCHHHHHHHHHCCCHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 99999999976982876548634677999999995991568993369999899999998861899999999998869799
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999842
Q gi|254780215|r 240 EDLMEETTKNALKLFS 255 (262)
Q Consensus 240 eei~~~~~~N~~~~f~ 255 (262)
T Consensus 242 eev~~~~~~N~~~lF~ 257 (258)
T PRK11449 242 DEIAEVLLNNTYTLFR 257 (258)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999999859