HHsearch alignment for GI: 254780215 and conserved domain: cd01294
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=97.90 E-value=0.003 Score=42.31 Aligned_cols=237 Identities=15% Similarity=0.205 Sum_probs=111.3
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEE-CCCHH--HHHHHHHH----HHHCC-CCCCCCCCCCCCCCCCCCH
Q ss_conf 16861388875652268999999998699899991-67987--78999999----98557-2332112445443344678
Q gi|254780215|r 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAI-AIKVK--DFVPLIKL----CQDYP-SSIFCSVGTHPCHAHEENE 73 (262)
Q Consensus 2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~-~~~~~--~~~~~~~l----~~~~p-~~i~~a~GiHP~~~~~~~~ 73 (262)
T Consensus 6 ~iD~HVHlRe----g~~~~~~~~a~a~G~t~v~~MPNT~Ppi~~~~~~~~y~~~i~~~~~~~~~~~~~~~~l--t~~~~~ 79 (335)
T cd01294 6 PDDMHLHLRD----GAMLKLVLPYTARGFSRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMTLYL--TENTTP 79 (335)
T ss_pred CCEEEEECCC----CHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEE--CCCCCH
T ss_conf 8661443789----6258889999837786999899999998999999999999997388983657888860--589999
Q ss_pred HHHHHHHHHCCCCCCCEE-----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH---------HHHHHHHH
Q ss_conf 899885310013332100-----4467755332211102467899998766420442033000---------23335799
Q gi|254780215|r 74 VLVDELVCLASHPRVVAI-----GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR---------SADDDMAA 139 (262)
Q Consensus 74 ~~~~~l~~l~~~~~~~aI-----GEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r---------~a~~~~l~ 139 (262)
T Consensus 80 ~e---l~~~~~~~~v~giK~y~~gattns--~~G--v-~~~~~~~~~~e~~~~~~~~l~~H~E~~~~~~~~~~~E~~~i~ 151 (335)
T cd01294 80 EE---LREAKKKGGIRGVKLYPAGATTNS--QGG--V-TDLEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIP 151 (335)
T ss_pred HH---HHHHHHCCCCCEEEECCCCCCCCC--CCC--C-CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 99---997665278554662146860046--557--6-558999999999986699677747658875660367887678
Q ss_pred HHHHHHHC-CCCCCCC-EECC-CCHHHHHHHHCC-C-----CEEEC----------------CCCCCHHH-HHHHHHHHH
Q ss_conf 98531000-3675331-1214-640234432103-5-----20202----------------33221133-322333321
Q gi|254780215|r 140 ILQEEMKK-GPFPFVI-HCFS-SSQKLADICLEL-G-----GYISF----------------TGMITFPK-YDALRAIAR 193 (262)
Q Consensus 140 iL~~~~~~-~~~~~i~-H~Fs-G~~~~~~~~l~~-g-----~y~S~----------------~g~i~~~~-~~~~~e~v~ 193 (262)
T Consensus 152 ~~~~l~~~~~~l~ihi~HIST~~~ve~ik~~~~~VtaEVTPHHL~lt~~d~~~~~~~~~~kcnPplR~~~Dr~AL~~al~ 231 (335)
T cd01294 152 VLEPLAQRFPKLKIVLEHITTADAVEYVKSCNENVAATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAAT 231 (335)
T ss_pred HHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCEEEEEHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 78999986888769998438599999999589970488733215751678744485800032999899899999999997
Q ss_pred CCCCCCEEEEECC-CCCCC-----CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0566717983078-66787-----77688758824499999999987289989999999999999842
Q gi|254780215|r 194 GIPMDRVLVETDS-PYIVP-----VSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 194 ~iPldriLlETDs-P~l~p-----~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~ 255 (262)
T Consensus 232 ~-G~id~~iaTDHAPH~~~eKe~~~~~AGi~~~~~al~~l~~~f~~--~~~l~~l~~f~s~n~a~~~g 296 (335)
T cd01294 232 S-GHPKFFLGSDSAPHPKSNKESSCGCAGIFSAPIALPYLAEVFEE--HNALDKLEAFASDNGPNFYG 296 (335)
T ss_pred C-CCCCEEEECCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHC
T ss_conf 4-99848984799998645524889999815788899999999980--48499999998465798809