HHsearch alignment for GI: 254780215 and conserved domain: cd01300

>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.

Probab=98.04  E-value=0.0016  Score=44.15  Aligned_cols=138  Identities=18%  Similarity=0.171  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHH--HHHHHHHHHHHHHHC----CCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCH
Q ss_conf             678999987664204420330002--333579998531000----36753311214640234432103520202332211
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRS--ADDDMAAILQEEMKK----GPFPFVIHCFSSSQKLADICLELGGYISFTGMITF  182 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~----~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~  182 (262)
T Consensus       294 ~e~~~~~~~~a~~~g~~v~~Ha~gd~~~~~~l~~~e~~~~~~~~~~~r~~i~H~~~~~~~~~~~~~~~g~~~~~~p~~~~  373 (479)
T cd01300         294 PEELEELVRAADEAGLQVAIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKLGVIASVQPNHLY  373 (479)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHCCCCHHHHHHHHHCCCEEEECHHHHH
T ss_conf             99999999999983983678523627999999999999986688777503300113799999999973975998537764


Q ss_pred             HHH-------------H---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH-HHH--------HHHHCC
Q ss_conf             333-------------2---233332105667179830786678777688758824499999-999--------987289
Q gi|254780215|r  183 PKY-------------D---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTA-KAL--------AKEKDV  237 (262)
Q Consensus       183 ~~~-------------~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~-~~i--------A~i~~~  237 (262)
T Consensus       374 ~~~~~~~~~~~g~~~~~~~~p~~~l~~-aG-v~v~lgtD~~~~~~--------~~~~~~~~av~~~~~~~~~~~~~~~~l  443 (479)
T cd01300         374 SDGDAAEDRRLGEERAKRSYPFRSLLD-AG-VPVALGSDAPVAPP--------DPLLGIWAAVTRKTPGGGVLGNPEERL  443 (479)
T ss_pred             CCCHHHHHHHHHHHHHHCCHHHHHHHH-CC-CEEEEECCCCCCCC--------CHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             341676650106878752379999998-89-95998279999887--------889999999845685677465845799


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q ss_conf             9899999999999998425
Q gi|254780215|r  238 SYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       238 ~~eei~~~~~~N~~~~f~~  256 (262)
T Consensus       444 t~~eaL~~aT~~~A~~lg~  462 (479)
T cd01300         444 SLEEALRAYTIGAAYAIGE  462 (479)
T ss_pred             CHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999999687