HHsearch alignment for GI: 254780215 and conserved domain: cd01311
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=95.12 E-value=0.33 Score=28.75 Aligned_cols=226 Identities=14% Similarity=0.115 Sum_probs=114.2
Q ss_pred EEEEECCCCCHHH------------HCCHHHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 1686138887565------------2268999999998699899991679--8778999999985572332112445443
Q gi|254780215|r 2 LIDTHCHLLLPDF------------DEDRHDVIMRAHQANVLKMIAIAIK--VKDFVPLIKLCQDYPSSIFCSVGTHPCH 67 (262)
Q Consensus 2 ~iD~H~HL~~~~~------------~~d~~~~i~~a~~~gv~~~i~~~~~--~~~~~~~~~l~~~~p~~i~~a~GiHP~~ 67 (262)
T Consensus 2 aiD~H~Hv~dp~~~~~~~~~~~~p~~~~~~dl~~~~~~~Gi~r~VlVQ~s~~g~Dn~~ll~al~~~~~~-~~~v~v~~~~ 80 (263)
T cd01311 2 AVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIYGADNSNLLDALASNGKA-RGGATVDPRT 80 (263)
T ss_pred CEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCC-EEEEEEECCC
T ss_conf 785512456899888888677899998999999999980996599978887745389999999856994-7999980798
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH-HHHHHHHHHHHHH
Q ss_conf 344678899885310013332100446775533221110246789999876642044203300023-3357999853100
Q gi|254780215|r 68 AHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA-DDDMAAILQEEMK 146 (262)
Q Consensus 68 ~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a-~~~~l~iL~~~~~ 146 (262)
T Consensus 81 ~---~d~~l~~l~~~----GvrGvR---~n~~~~~~~-~--~~~~~~~~~ri~~~gw~~~l~~~~~~l~~~~~~l~~~-- 145 (263)
T cd01311 81 T---TDAELKEMHDA----GVRGVR---FNFLFGGVD-N--KDELDEIAKRAAELGWHVQVYFDAVDLPALLPFLQKL-- 145 (263)
T ss_pred C---CHHHHHHHHHC----CCCCEE---EECCCCCCC-C--HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC--
T ss_conf 9---97999998765----897137---725677778-9--8999999999987498645203711069999999978--
Q ss_pred CCCCCCCC-EECCCC---------HHHHHHHHCC-CCEEECCCCCCHHH--------HHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 03675331-121464---------0234432103-52020233221133--------32233332105667179830786
Q gi|254780215|r 147 KGPFPFVI-HCFSSS---------QKLADICLEL-GGYISFTGMITFPK--------YDALRAIARGIPMDRVLVETDSP 207 (262)
Q Consensus 147 ~~~~~~i~-H~FsG~---------~~~~~~~l~~-g~y~S~~g~i~~~~--------~~~~~e~v~~iPldriLlETDsP 207 (262)
T Consensus 146 --p~~vViDH~g~p~~~~g~~~~~~~~l~~L~~~~~v~vKlSg~~r~s~~~~~~~d~~p~~~~l~~~-gp~RlmWGSDWP 222 (263)
T cd01311 146 --PVAVVIDHFGRPDVTKGVDGAEFAALLKLIEEGNVWVKVSGPYRLSVKQEAYADVIAFARQIVAA-APDRLVWGTDWP 222 (263)
T ss_pred --CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCCC
T ss_conf --99899856778898878779889999999966986999645455158898866899999999986-999489979999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHH
Q ss_conf 678777688758824499999999987289989999-999999999
Q gi|254780215|r 208 YIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLM-EETTKNALK 252 (262)
Q Consensus 208 ~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~-~~~~~N~~~ 252 (262)
T Consensus 223 h~~---~~~~~~~p-d~~~ll~~~~~w--~~d~~~~~~ilv~NP~r 262 (263)
T cd01311 223 HPR---LREPDPMP-DDGALLRLIPSW--APDAQLQRKNLVDNPAR 262 (263)
T ss_pred CCC---CCCCCCCC-CHHHHHHHHHHH--CCCHHHHHHHHHHCHHH
T ss_conf 999---87678999-989999999988--69999999998539421