HHsearch alignment for GI: 254780215 and conserved domain: cd01316
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=96.96 E-value=0.042 Score=34.73 Aligned_cols=238 Identities=18% Similarity=0.183 Sum_probs=102.0
Q ss_pred EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 16861388875--6522689999999986998999916------798778999999985572332112445443344678
Q gi|254780215|r 2 LIDTHCHLLLP--DFDEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE 73 (262)
Q Consensus 2 ~iD~H~HL~~~--~~~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~ 73 (262)
T Consensus 8 ~iD~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~---~~~d~~~~~~~~-~~~~ 83 (344)
T cd01316 8 LIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAK---ARCDYAFSIGAT-STNA 83 (344)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCC---CCCCEEEEEEEC-CCCH
T ss_conf 880057779999877464999999998479779977999989979999999999974317---732112688852-6767
Q ss_pred HHHHHHHHHCCCCCCCEECCCC----CCC----------CCCCCC--CHHHHHHHHHHHHHHHHCCCCC-EEECHHHHHH
Q ss_conf 8998853100133321004467----755----------332211--1024678999987664204420-3300023335
Q gi|254780215|r 74 VLVDELVCLASHPRVVAIGETG----LDR----------YHNAHT--IEEQKVVFLRHIEASRITGIPL-VIHSRSADDD 136 (262)
Q Consensus 74 ~~~~~l~~l~~~~~~~aIGEiG----LD~----------~~~~~~--~e~Q~~vF~~ql~lA~e~~~pv-~iH~r~a~~~ 136 (262)
T Consensus 84 ~~l~~l~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~aE~~~~~~~l~la~~~~~~lHi~Hi--St~~ 160 (344)
T cd01316 84 ATVGELASEAVGLKFY-LNETFSTLILDKITAWASHFNAWPSTKPIVTHAKSQTLAAVLLLASLHNRSIHICHV--SSKE 160 (344)
T ss_pred HHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC--CCHH
T ss_conf 8999987546838999-635563577779999999986364569731422389999999999987998999946--8877
Q ss_pred HHHHHHHHHHCCC---CCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH-HHHHHHHHHCCCCCCEEEEEC-CCCCCC
Q ss_conf 7999853100036---75331121464023443210352020233221133-322333321056671798307-866787
Q gi|254780215|r 137 MAAILQEEMKKGP---FPFVIHCFSSSQKLADICLELGGYISFTGMITFPK-YDALRAIARGIPMDRVLVETD-SPYIVP 211 (262)
Q Consensus 137 ~l~iL~~~~~~~~---~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~-~~~~~e~v~~iPldriLlETD-sP~l~p 211 (262)
T Consensus 161 ~v~lI~~ak~~G~~Vt~Et~ph~L~l~~~~~~---~~~~--k~~PPLR~~~d~~aL~~~l~~--ID--~IaSDHaP~~~~ 231 (344)
T cd01316 161 EINLIRLAKARGLKVTCEVSPHHLFLSQDDLP---RGQY--EVRPFLPTREDQEALWENLDY--ID--CFATDHAPHTLA 231 (344)
T ss_pred HHHHHHHHHHCCCCEEEEECHHHHCCCHHHHH---CCCC--CCCCCCCCHHHHHHHHHHHHC--CC--EEECCCCCCCHH
T ss_conf 99999999872897478634554208775763---3598--728899997899999975422--77--897167765765
Q ss_pred CCCC-----CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7768-----87588244999999999872899899999999999998425
Q gi|254780215|r 212 VSCQ-----GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 212 ~~~r-----~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
T Consensus 232 ~K~~~~~~~G~~GlEt~lp~~~~~v-~~g~lsl~~lv~~~s~nPAki~gl 280 (344)
T cd01316 232 EKTGNKPPPGFPGVETSLPLLLTAV-HEGRLTIEDIVDRLHTNPKRIFNL 280 (344)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 5022469998562776899999999-839978999999994989997288