HHsearch alignment for GI: 254780215 and conserved domain: cd01318
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=97.52 E-value=0.011 Score=38.60 Aligned_cols=143 Identities=14% Similarity=0.151 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCE-EECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH
Q ss_conf 0246789999876642044203-300023335799985310003675331121464023443210352020233221133
Q gi|254780215|r 106 EEQKVVFLRHIEASRITGIPLV-IHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPK 184 (262)
Q Consensus 106 e~Q~~vF~~ql~lA~e~~~pv~-iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~ 184 (262)
T Consensus 154 ~aE~~av~r~l~la~~~g~~~hi~hvSt--~~~l~~i~~a~~~vt~et~ph~L~l~~~~~---~~~~~~~k~~PPLR~~~ 228 (361)
T cd01318 154 EAAAVATARALKLARRHGARLHICHVST--PEELKLIKKAKPGVTVEVTPHHLFLDVEDY---DRLGTLGKVNPPLRSRE 228 (361)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCC--HHHHHHHHHCCCCCEEEECHHHHCCCHHHH---CCCCCCEEECCCCCCHH
T ss_conf 9999999999999998599689994088--999999997599965885236542781343---15687166359989778
Q ss_pred HHHHHHHHHCCCCCCE-EEEEC-CCCCCCCC---CC----CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3223333210566717-98307-86678777---68----8758824499999999987289989999999999999842
Q gi|254780215|r 185 YDALRAIARGIPMDRV-LVETD-SPYIVPVS---CQ----GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 185 ~~~~~e~v~~iPldri-LlETD-sP~l~p~~---~r----~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~ 255 (262)
T Consensus 229 d--r~aL~~~l~~G~Id~i~SDH~P~~~~~K~~~f~~a~~Gi~g~e~~l~l~~~-lv~~g~l~l~~~v~~~s~nPAki~g 305 (361)
T cd01318 229 D--RKALLQALADGRIDVIASDHAPHTLEEKRKGYPAAPSGIPGVETALPLMLT-LVNKGILSLSRVVRLTSHNPARIFG 305 (361)
T ss_pred H--HHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCCCCEEHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9--999999986599649972898889898368977577875109889999999-9872881499999999688999949
Q ss_pred H
Q ss_conf 5
Q gi|254780215|r 256 K 256 (262)
Q Consensus 256 ~ 256 (262)
T Consensus 306 l 306 (361)
T cd01318 306 I 306 (361)
T ss_pred C
T ss_conf 8