Query         gi|254780215|ref|YP_003064628.1| hypothetical protein CLIBASIA_00500 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 262
No_of_seqs    138 out of 3434
Neff          7.2 
Searched_HMMs 39220
Date          Mon May 23 18:24:27 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780215.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR00010 TIGR00010 hydrolase, 100.0       0       0  584.9  20.4  254    2-255     1-268 (269)
  2 PRK10812 putative metallodepen 100.0       0       0  549.5  22.3  257    1-262     2-261 (265)
  3 PRK10425 DNase TatD; Provision 100.0       0       0  548.3  22.7  252    2-255     1-257 (258)
  4 cd01310 TatD_DNAse TatD like p 100.0       0       0  540.6  23.0  251    2-255     1-251 (251)
  5 PRK11449 putative deoxyribonuc 100.0       0       0  539.0  22.5  251    2-255     5-257 (258)
  6 COG0084 TatD Mg-dependent DNas 100.0       0       0  536.5  22.3  253    1-256     2-256 (256)
  7 pfam01026 TatD_DNase TatD rela 100.0       0       0  525.0  23.2  252    3-255     1-255 (255)
  8 KOG3020 consensus              100.0       0       0  413.8  18.4  253    1-255    17-295 (296)
  9 COG1099 Predicted metal-depend 100.0 5.9E-32 1.5E-36  233.3  15.3  234    1-256     1-253 (254)
 10 COG1831 Predicted metal-depend  99.7 4.9E-15 1.2E-19  120.8  16.5  242    2-257     7-283 (285)
 11 pfam04909 Amidohydro_2 Amidohy  99.2 7.9E-09   2E-13   79.5  17.2  233    3-256     1-270 (270)
 12 PRK09875 putative hydrolase; P  99.0 7.3E-08 1.9E-12   73.0  16.6  227   22-254    40-291 (292)
 13 cd00530 PTE Phosphotriesterase  99.0 1.1E-07 2.7E-12   71.9  16.8  226   22-254    38-293 (293)
 14 pfam02126 PTE Phosphotriestera  99.0 1.6E-07 4.1E-12   70.8  17.7  229   22-255    44-308 (308)
 15 cd01292 metallo-dependent_hydr  98.9 1.4E-07 3.7E-12   71.1  16.1  234    2-252     1-274 (275)
 16 cd01295 AdeC Adenine deaminase  98.7 2.8E-06 7.1E-11   62.5  16.7  234    2-256    11-254 (422)
 17 COG2159 Predicted metal-depend  98.6 3.2E-06 8.1E-11   62.1  13.3  208   22-257    55-291 (293)
 18 TIGR03583 EF_0837 probable ami  98.5 5.7E-06 1.5E-10   60.4  13.5  231    2-256    52-312 (365)
 19 PRK12394 putative metallo-depe  98.5 4.6E-06 1.2E-10   61.0  12.9  233    2-256    59-319 (387)
 20 COG3618 Predicted metal-depend  98.5 2.1E-05 5.3E-10   56.7  15.8  231    1-255     8-277 (279)
 21 cd01317 DHOase_IIa Dihydroorot  98.4 7.9E-05   2E-09   52.8  16.7  240    2-256    16-324 (374)
 22 cd01302 Cyclic_amidohydrolases  98.4 0.00014 3.7E-09   51.1  18.0  239    2-258     7-288 (337)
 23 PRK07369 dihydroorotase; Provi  98.3 0.00017 4.3E-09   50.6  17.1  238    2-256    59-367 (419)
 24 COG3964 Predicted amidohydrola  98.3 2.4E-05   6E-10   56.3  12.6  219    2-256    59-319 (386)
 25 PRK02382 dihydroorotase; Provi  98.3 0.00023 5.9E-09   49.7  16.2  239    2-256    55-358 (440)
 26 PRK10657 isoaspartyl dipeptida  98.2 0.00067 1.7E-08   46.6  18.4  247    2-256    57-338 (384)
 27 PRK09357 pyrC dihydroorotase;   98.2 0.00064 1.6E-08   46.8  17.4  239    2-256    57-365 (425)
 28 PRK07575 dihydroorotase; Provi  98.1 0.00046 1.2E-08   47.8  15.6  244    2-256    57-360 (439)
 29 PRK08393 N-ethylammeline chlor  98.1 0.00066 1.7E-08   46.7  16.2  213   23-256   104-344 (419)
 30 PRK11170 nagA N-acetylglucosam  98.1  0.0012 2.9E-08   45.1  17.4  234    2-256    55-345 (381)
 31 PRK06189 allantoinase; Provisi  98.1  0.0012 3.1E-08   44.9  18.1   85  169-256   277-371 (433)
 32 COG1735 Php Predicted metal-de  98.1 0.00014 3.6E-09   51.2  12.5  227   24-256    56-314 (316)
 33 cd01312 Met_dep_hydrolase_D Me  98.0 0.00075 1.9E-08   46.3  15.3  211   23-256    82-335 (381)
 34 PRK10027 cryptic adenine deami  98.0 0.00044 1.1E-08   47.9  13.9  233    2-256    86-329 (588)
 35 cd01300 YtcJ_like YtcJ_like me  98.0  0.0016 4.1E-08   44.2  16.8  138  109-256   294-462 (479)
 36 PRK08203 hydroxydechloroatrazi  98.0  0.0018 4.6E-08   43.8  16.9  138  109-256   217-374 (456)
 37 PRK13404 dihydropyrimidinase;   98.0  0.0023 5.9E-08   43.1  17.3   34  223-256   351-384 (476)
 38 PRK09059 dihydroorotase; Valid  97.9  0.0025 6.5E-08   42.8  16.8  237    2-256    62-369 (429)
 39 cd01307 Met_dep_hydrolase_B Me  97.9  0.0022 5.5E-08   43.3  15.6  134  109-256   148-296 (338)
 40 cd01298 ATZ_TRZ_like TRZ/ATZ f  97.9  0.0028 7.1E-08   42.6  16.1  140  109-256   193-351 (411)
 41 cd01294 DHOase Dihydroorotase   97.9   0.003 7.7E-08   42.3  18.4  237    2-255     6-296 (335)
 42 cd01314 D-HYD D-hydantoinases   97.9  0.0031 7.8E-08   42.3  16.0  122    2-132    53-184 (447)
 43 PRK09237 dihydroorotase; Provi  97.9 0.00071 1.8E-08   46.5  12.7  230    2-256    59-319 (384)
 44 PRK06038 N-ethylammeline chlor  97.9  0.0026 6.5E-08   42.8  15.5  137  109-256   191-349 (432)
 45 PRK08418 chlorohydrolase; Prov  97.9  0.0015 3.7E-08   44.4  13.9  212   23-256   109-358 (407)
 46 COG1001 AdeC Adenine deaminase  97.8  0.0021 5.3E-08   43.4  14.6  229    2-256    79-322 (584)
 47 PRK09356 imidazolonepropionase  97.8 0.00086 2.2E-08   45.9  12.6  131  112-257   223-359 (401)
 48 PRK08323 dihydropyrimidinase;   97.8  0.0046 1.2E-07   41.1  16.7   33  224-256   347-379 (463)
 49 PRK06380 metal-dependent hydro  97.8  0.0046 1.2E-07   41.1  15.8  137  109-256   185-344 (418)
 50 PRK07228 N-ethylammeline chlor  97.8  0.0036 9.1E-08   41.8  14.6  140  109-256   198-356 (445)
 51 PRK08044 allantoinase; Provisi  97.7  0.0053 1.3E-07   40.7  18.4  240    2-256    55-374 (449)
 52 PRK08204 hypothetical protein;  97.7   0.004   1E-07   41.5  14.7  139  109-256   202-363 (451)
 53 PRK08392 hypothetical protein;  97.7 0.00082 2.1E-08   46.1  11.0  150    3-179     1-182 (215)
 54 PRK09045 N-ethylammeline chlor  97.7  0.0061 1.6E-07   40.3  14.9  137  109-256   202-360 (444)
 55 cd01293 Bact_CD Bacterial cyto  97.7  0.0067 1.7E-07   40.0  17.9  217   21-256   101-357 (398)
 56 PRK07627 dihydroorotase; Provi  97.7  0.0072 1.8E-07   39.8  17.4  237    2-256    57-364 (425)
 57 PRK06886 hypothetical protein;  97.6  0.0074 1.9E-07   39.7  16.7  217   22-255    75-326 (328)
 58 PRK01211 dihydroorotase; Provi  97.6  0.0079   2E-07   39.5  15.7  231    2-256    50-335 (413)
 59 PRK07213 chlorohydrolase; Prov  97.6  0.0088 2.2E-07   39.2  16.9  135  110-256   181-327 (378)
 60 PRK12393 amidohydrolase; Provi  97.6   0.009 2.3E-07   39.2  16.8  137  109-256   219-376 (459)
 61 cd01315 L-HYD_ALN L-Hydantoina  97.6  0.0092 2.4E-07   39.1  18.3   35  222-256   338-372 (447)
 62 cd01296 Imidazolone-5PH Imidaz  97.6  0.0042 1.1E-07   41.4  12.6  130  112-256   195-329 (371)
 63 PRK08417 dihydroorotase; Provi  97.5    0.01 2.6E-07   38.8  18.3   35  222-256   300-334 (387)
 64 TIGR03178 allantoinase allanto  97.5   0.011 2.8E-07   38.6  17.2   33  223-256   336-368 (442)
 65 cd01318 DHOase_IIb Dihydroorot  97.5   0.011 2.8E-07   38.6  16.7  143  106-256   154-306 (361)
 66 COG0402 SsnA Cytosine deaminas  97.5   0.012   3E-07   38.4  15.2  221   21-256   108-355 (421)
 67 cd01303 GDEase Guanine deamina  97.4   0.014 3.5E-07   37.9  16.9  215   22-256   117-370 (429)
 68 PRK07328 histidinol-phosphatas  97.4   0.016   4E-07   37.6  15.0  126    1-130     1-160 (268)
 69 PRK06687 chlorohydrolase; Vali  97.4   0.016   4E-07   37.5  15.4  137  109-256   195-353 (422)
 70 PRK09230 cytosine deaminase; P  97.4   0.016 4.2E-07   37.4  14.5  220   21-256   107-363 (426)
 71 PRK05451 dihydroorotase; Provi  97.3   0.018 4.5E-07   37.2  16.5  234    3-256    11-303 (345)
 72 PRK06846 deaminase; Validated   97.3  0.0023 5.8E-08   43.1   8.9  198   20-241   118-342 (410)
 73 PRK09060 dihydroorotase; Valid  97.3   0.022 5.6E-07   36.6  15.5  244    2-256    58-363 (444)
 74 PRK06151 N-ethylammeline chlor  97.2   0.028 7.2E-07   35.8  16.5  215   23-256   114-375 (480)
 75 PRK09236 dihydroorotase; Revie  97.1    0.03 7.6E-07   35.7  18.6   84  169-256   274-367 (444)
 76 PRK07583 cytosine deaminase; V  97.0    0.01 2.6E-07   38.8   9.6  216   22-256   128-379 (437)
 77 cd01316 CAD_DHOase The eukaryo  97.0   0.042 1.1E-06   34.7  17.6  238    2-256     8-280 (344)
 78 cd00854 NagA N-acetylglucosami  96.9   0.043 1.1E-06   34.6  16.9  137  115-256   177-343 (374)
 79 PRK09248 putative hydrolase; V  96.8   0.031   8E-07   35.6  10.9   39    1-39      3-42  (246)
 80 cd01308 Isoaspartyl-dipeptidas  96.8   0.061 1.5E-06   33.6  18.6   65  192-256   271-341 (387)
 81 COG0044 PyrC Dihydroorotase an  96.6   0.076 1.9E-06   33.0  13.2  118    2-133    55-181 (430)
 82 TIGR00857 pyrC_multi dihydroor  96.6  0.0087 2.2E-07   39.3   6.4  249    2-255    47-396 (459)
 83 PRK04250 dihydroorotase; Provi  96.6   0.082 2.1E-06   32.8  15.0  241    2-256    54-331 (408)
 84 PRK07203 putative chlorohydrol  96.5    0.02 5.1E-07   36.8   8.1  136  109-256   204-357 (442)
 85 COG1387 HIS2 Histidinol phosph  96.5   0.084 2.1E-06   32.7  11.0  156    1-179     1-194 (237)
 86 PRK09228 guanine deaminase; Pr  96.4    0.11 2.8E-06   32.0  17.8  138  110-256   210-366 (429)
 87 COG4464 CapC Capsular polysacc  96.3   0.053 1.4E-06   34.0   9.0  207    2-254     1-232 (254)
 88 COG1820 NagA N-acetylglucosami  96.3    0.12 3.1E-06   31.6  15.6  232    2-255    54-343 (380)
 89 TIGR03314 Se_ssnA putative sel  96.2   0.068 1.7E-06   33.3   9.4  136  109-256   203-356 (441)
 90 TIGR03179 gua_deam guanine dea  96.2    0.13 3.4E-06   31.4  16.4  215   23-256   120-365 (427)
 91 pfam01979 Amidohydro_1 Amidohy  95.9    0.18 4.6E-06   30.5  15.3  136  116-258   149-290 (307)
 92 PRK09229 N-formimino-L-glutama  95.7    0.21 5.3E-06   30.1  15.8  137  109-256   215-377 (457)
 93 PRK05588 histidinol-phosphatas  95.7    0.21 5.4E-06   30.1  12.7  123    1-130     1-146 (256)
 94 PRK13206 ureC urease subunit a  95.7    0.11 2.8E-06   31.9   8.4  115    3-141   138-270 (573)
 95 PRK07572 cytosine deaminase; V  95.6    0.23 5.8E-06   29.8  16.3  218   25-256   106-358 (425)
 96 PRK13985 UreB urease subunit b  95.5    0.12   3E-06   31.8   8.1  115    3-141   132-264 (568)
 97 COG1574 Predicted metal-depend  95.4    0.27 6.9E-06   29.3  14.7  221   21-256   215-486 (535)
 98 PRK00912 ribonuclease P protei  95.4    0.27   7E-06   29.3  10.3   96  150-256   107-219 (237)
 99 PRK13309 ureC urease subunit a  95.2    0.13 3.4E-06   31.4   7.6  115    3-141   136-268 (572)
100 PRK13207 ureC urease subunit a  95.2    0.16 4.1E-06   30.9   8.0  115    3-141   132-264 (568)
101 cd01311 PDC_hydrolase 2-pyrone  95.1    0.33 8.4E-06   28.8  17.6  226    2-252     2-262 (263)
102 pfam01244 Peptidase_M19 Membra  95.1    0.34 8.7E-06   28.6  10.5  144  109-255   156-315 (316)
103 TIGR01792 urease_alph urease,   95.0     0.1 2.6E-06   32.1   6.6  115    3-141   140-272 (605)
104 PRK13308 ureC urease subunit a  95.0    0.19 4.8E-06   30.4   7.8  105    3-131   136-249 (569)
105 cd01299 Met_dep_hydrolase_A Me  94.9    0.37 9.4E-06   28.4  15.8  133  109-256   159-313 (342)
106 cd00375 Urease_alpha Urease al  94.9    0.21 5.3E-06   30.1   7.9  105    3-131   132-249 (567)
107 cd01309 Met_dep_hydrolase_C Me  94.7    0.42 1.1E-05   28.1   9.4  120  122-257   191-320 (359)
108 COG1228 HutI Imidazolonepropio  94.6    0.44 1.1E-05   27.9  12.6  127  113-257   223-356 (406)
109 COG2355 Zn-dependent dipeptida  94.4    0.49 1.2E-05   27.6  10.1  135  113-257   152-310 (313)
110 PTZ00124 adenosine deaminase;   94.2    0.55 1.4E-05   27.3   9.6  127  112-254   208-348 (362)
111 PRK00369 pyrC dihydroorotase;   94.1    0.58 1.5E-05   27.1  15.7  221    2-256    50-318 (393)
112 TIGR00674 dapA dihydrodipicoli  93.2    0.82 2.1E-05   26.1  10.6  157   17-194    20-219 (288)
113 TIGR01430 aden_deam adenosine   93.1    0.82 2.1E-05   26.1   8.5  145   83-252   165-330 (346)
114 PRK05985 cytosine deaminase; P  92.8    0.93 2.4E-05   25.7  15.9  138  111-256   193-347 (398)
115 PRK08123 histidinol-phosphatas  92.2     1.1 2.8E-05   25.3  11.9   68    1-68      1-92  (266)
116 COG0804 UreC Urea amidohydrola  92.2     0.9 2.3E-05   25.8   7.2  105    3-131   132-249 (568)
117 PRK09061 D-glutamate deacylase  91.9     1.2   3E-05   25.1  16.1   27  229-255   394-420 (496)
118 pfam07969 Amidohydro_3 Amidohy  91.7     1.2 3.1E-05   25.0  13.3  135  110-256   213-375 (392)
119 KOG3968 consensus               91.4     1.3 3.4E-05   24.7  10.8  223   18-258   122-379 (439)
120 TIGR03473 HpnK hopanoid biosyn  90.8    0.51 1.3E-05   27.5   4.7   57   10-69      9-65  (283)
121 cd01301 rDP_like renal dipepti  90.4     1.7 4.2E-05   24.1   9.1  141  110-253   153-309 (309)
122 pfam02679 ComA (2R)-phospho-3-  90.3    0.85 2.2E-05   26.0   5.6  169   25-206    10-207 (245)
123 pfam04794 YdjC YdjC-like prote  90.2     1.4 3.5E-05   24.6   6.5   60    8-70      6-65  (261)
124 PRK08609 hypothetical protein;  90.1     1.6 4.2E-05   24.1   6.8   15   18-32    351-365 (570)
125 PRK12310 hydroxylamine reducta  89.7     1.9 4.7E-05   23.8  12.0  187   31-242   123-361 (429)
126 PRK07945 hypothetical protein;  88.9     1.9 4.9E-05   23.6   6.5   33    4-36     99-131 (335)
127 PRK05290 hydroxylamine reducta  88.8     2.2 5.5E-05   23.3  12.5  189   31-243   233-473 (540)
128 PRK09358 adenosine deaminase;   88.4     2.3 5.8E-05   23.1  16.5  143   86-252   160-313 (333)
129 cd01320 ADA Adenosine deaminas  88.1     2.4 6.1E-05   23.0  16.7  143   86-252   156-309 (325)
130 TIGR01858 tag_bisphos_ald clas  87.2    0.89 2.3E-05   25.9   3.9  107    7-131    77-208 (282)
131 cd04731 HisF The cyclase subun  87.2     2.7 6.9E-05   22.7   6.4   38   15-52     26-69  (243)
132 KOG4342 consensus               87.0    0.59 1.5E-05   27.1   2.9   54   41-94    308-362 (1078)
133 cd01313 Met_dep_hydrolase_E Me  86.8     2.8 7.2E-05   22.6  15.6  135  110-256   207-366 (418)
134 PRK01033 imidazole glycerol ph  86.2     2.1 5.4E-05   23.4   5.4   31   24-54     91-121 (253)
135 PRK07329 hypothetical protein;  85.4     3.3 8.5E-05   22.1   6.4  117    2-129     1-145 (246)
136 PRK04326 methionine synthase;   85.1     3.4 8.7E-05   22.0   7.1   93  111-208   194-300 (330)
137 PRK05678 succinyl-CoA syntheta  84.7     3.6 9.1E-05   21.9   8.2   51   19-69     79-143 (289)
138 PRK02083 imidazole glycerol ph  83.7       3 7.8E-05   22.3   5.2   20   17-36     31-50  (253)
139 cd01297 D-aminoacylase D-amino  83.1     4.1 0.00011   21.4  14.1  135  113-256   202-354 (415)
140 pfam00962 A_deaminase Adenosin  83.1     4.1 0.00011   21.4  17.2  126  110-252   178-314 (329)
141 cd01914 HCP Hybrid cluster pro  83.0     4.2 0.00011   21.4  11.8  187   31-242   118-357 (423)
142 PRK02621 consensus              82.9     2.5 6.4E-05   22.9   4.6   22   16-37     30-51  (254)
143 PRK06361 hypothetical protein;  82.7     4.3 0.00011   21.4   8.6   87  160-257   129-216 (216)
144 PRK02747 consensus              82.4     3.5   9E-05   21.9   5.1   21   16-36     30-50  (257)
145 KOG4245 consensus               81.6     4.7 0.00012   21.1   8.3  189   46-259    56-289 (297)
146 COG0418 PyrC Dihydroorotase [N  81.5     4.7 0.00012   21.1  13.0  142  109-256   117-303 (344)
147 COG0685 MetF 5,10-methylenetet  81.3     4.8 0.00012   21.0   7.0  115    5-128    80-208 (291)
148 PRK01659 consensus              81.1     2.7 6.8E-05   22.7   4.1   22   16-37     30-51  (252)
149 PRK00830 consensus              80.6     3.2 8.2E-05   22.2   4.4   22   15-36     33-54  (273)
150 KOG2584 consensus               79.7     5.4 0.00014   20.7   8.0  166   88-256   211-393 (522)
151 PRK07998 gatY putative fructos  79.6     4.6 0.00012   21.1   5.0   59  138-196   188-248 (283)
152 PRK02145 consensus              78.5     4.6 0.00012   21.1   4.7   22   16-37     31-52  (257)
153 cd06564 GH20_DspB_LnbB-like Gl  78.4     5.9 0.00015   20.4   7.7  146   16-174    82-238 (326)
154 pfam08965 DUF1870 Domain of un  78.4     2.5 6.3E-05   22.9   3.3   47  214-260    36-86  (117)
155 COG1904 UxaC Glucuronate isome  78.3     4.6 0.00012   21.1   4.6   53    2-55     27-92  (463)
156 TIGR01885 Orn_aminotrans ornit  78.0     4.7 0.00012   21.1   4.6  194    9-239    76-329 (426)
157 cd01305 archeal_chlorohydrolas  78.0     6.1 0.00015   20.3   7.1  125  111-251   126-261 (263)
158 PRK11148 cyclic 3',5'-adenosin  77.9     6.1 0.00016   20.3  11.6  154   17-181    41-224 (275)
159 TIGR03572 WbuZ glycosyl amidat  76.6     6.1 0.00016   20.3   4.9   38   15-52     29-72  (232)
160 pfam02614 UxaC Glucuronate iso  75.9     3.7 9.4E-05   21.8   3.6   16  240-255   446-461 (465)
161 PRK09819 alpha-mannosidase; Pr  75.0     2.7 6.8E-05   22.7   2.7   48   41-88     31-81  (874)
162 pfam03063 Prismane Prismane/CO  74.7     7.4 0.00019   19.8  10.0   90  153-242   295-409 (477)
163 cd00453 FTBP_aldolase_II Fruct  74.6     6.6 0.00017   20.1   4.6   48  149-196   242-291 (340)
164 cd06394 PBP1_iGluR_Kainate_KA1  74.5     7.5 0.00019   19.7   7.6  132   22-169    58-204 (333)
165 PRK13597 imidazole glycerol ph  74.5     6.4 0.00016   20.2   4.5   25   15-39     30-54  (252)
166 PRK08185 hypothetical protein;  74.4     7.5 0.00019   19.7   5.1   57  138-194   187-245 (283)
167 PRK03220 consensus              74.2     5.4 0.00014   20.7   4.1   38   15-52     30-73  (257)
168 COG0613 Predicted metal-depend  73.7     5.3 0.00014   20.7   3.9   35    1-35      2-36  (258)
169 PRK04281 consensus              73.3       8  0.0002   19.5   5.2   22   16-37     30-51  (254)
170 PRK06806 fructose-bisphosphate  73.0     8.1 0.00021   19.5   4.9   59  138-196   189-249 (281)
171 TIGR03239 GarL 2-dehydro-3-deo  72.7     8.3 0.00021   19.4   6.0  142   19-183    74-236 (249)
172 cd00443 ADA_AMPD Adenosine/AMP  72.6     8.3 0.00021   19.4  10.7  144   86-252   134-289 (305)
173 PRK05211 consensus              72.1     8.5 0.00022   19.4   5.2   35   22-56     80-114 (248)
174 COG5016 Pyruvate/oxaloacetate   71.4     8.8 0.00022   19.3   7.9  111   12-132    93-208 (472)
175 PRK02925 glucuronate isomerase  71.4     4.9 0.00013   20.9   3.3   15  241-255   451-465 (466)
176 cd03311 CIMS_C_terminal_like C  71.3     8.9 0.00023   19.2   7.3   82  122-208   207-311 (332)
177 COG0191 Fba Fructose/tagatose   71.0       9 0.00023   19.2   4.8   59  138-196   193-253 (286)
178 cd00947 TBP_aldolase_IIB Tagat  71.0       9 0.00023   19.2   4.8   59  138-196   185-245 (276)
179 PRK12738 kbaY tagatose-bisphos  70.8     9.1 0.00023   19.2   6.2   60  138-197   191-252 (286)
180 smart00481 POLIIIAc DNA polyme  70.7     9.1 0.00023   19.1   5.1   58    4-63      1-61  (67)
181 PRK02134 hypothetical protein;  70.6     9.2 0.00023   19.1   7.0   56   10-68     10-65  (253)
182 TIGR03471 HpnJ hopanoid biosyn  70.5     9.2 0.00023   19.1   6.4   53   15-69     56-111 (472)
183 TIGR01975 isoAsp_dipep beta-as  70.1     9.4 0.00024   19.1   4.9  242    2-256    58-343 (391)
184 PRK06801 hypothetical protein;  69.9     9.5 0.00024   19.0   4.9   46  149-194   203-250 (286)
185 PRK09545 znuA high-affinity zi  69.8     9.5 0.00024   19.0   7.8   20  187-206   240-259 (308)
186 PRK09389 (R)-citramalate synth  68.6      10 0.00026   18.9   5.2   16  117-132   179-194 (487)
187 PTZ00187 succinyl-CoA syntheta  68.1      10 0.00026   18.8   8.3   51   20-70     95-160 (309)
188 PRK10558 alpha-dehydro-beta-de  67.8      10 0.00027   18.8   5.0   35   19-54     81-116 (256)
189 COG5014 Predicted Fe-S oxidore  67.8      10 0.00027   18.8   4.8   18  188-205   109-126 (228)
190 pfam01116 F_bP_aldolase Fructo  67.2      11 0.00027   18.7   4.9   57  138-194   190-248 (283)
191 pfam02811 PHP PHP domain. The   67.0      11 0.00028   18.7   5.8   62    3-64      1-65  (173)
192 cd00537 MTHFR Methylenetetrahy  66.7      11 0.00028   18.6   6.8  116    4-128    60-193 (274)
193 TIGR01108 oadA oxaloacetate de  66.7      11 0.00028   18.6   8.0  180   11-202    85-291 (616)
194 PRK09195 gatY tagatose-bisphos  64.5      12 0.00031   18.3   4.9   58  139-196   192-251 (284)
195 PRK13306 ulaD 3-keto-L-gulonat  64.5      12 0.00031   18.3   7.5   85  110-202    93-190 (216)
196 PRK11858 aksA trans-homoaconit  64.3      12 0.00031   18.3   7.3   17  117-133   182-198 (378)
197 TIGR03569 NeuB_NnaB N-acetylne  63.3      12  0.0003   18.4   3.9  150   18-179    18-202 (329)
198 LOAD_php consensus              62.6     9.7 0.00025   19.0   3.4   63    2-64      1-68  (206)
199 TIGR02090 LEU1_arch isopropylm  62.6      13 0.00033   18.1   7.2  162   22-202    78-277 (371)
200 PRK00048 dihydrodipicolinate r  61.9      13 0.00034   18.0   6.1   35  110-144    80-114 (265)
201 PRK07084 fructose-bisphosphate  61.7      14 0.00035   18.0  11.4   81  111-196   204-287 (321)
202 COG0289 DapB Dihydrodipicolina  61.1      14 0.00035   17.9   5.9  162   32-239     4-182 (266)
203 PRK12857 putative aldolase; Re  61.0      14 0.00036   17.9   4.7   57  138-194   191-249 (284)
204 PRK09196 fructose-1,6-bisphosp  60.9      14 0.00036   17.9  11.2  182    4-196    77-296 (347)
205 pfam01717 Meth_synt_2 Cobalami  60.4      14 0.00036   17.9   4.0   81  122-208   209-303 (324)
206 TIGR00007 TIGR00007 phosphorib  60.1     7.1 0.00018   19.9   2.3   47  160-206    84-130 (241)
207 KOG0081 consensus               59.8      12 0.00031   18.4   3.5   50   73-130   110-162 (219)
208 PRK03170 dihydrodipicolinate s  58.5      15 0.00039   17.7  12.4  104   17-130    23-134 (292)
209 TIGR01703 hybrid_clust hydroxy  58.0      16  0.0004   17.6   7.2  190   31-242   247-499 (567)
210 COG0106 HisA Phosphoribosylfor  57.4      16 0.00041   17.5   4.2   33   25-57     93-125 (241)
211 PRK00957 methionine synthase;   57.2      16 0.00041   17.5   4.7   95  105-207   177-283 (307)
212 COG0074 SucD Succinyl-CoA synt  56.6      16 0.00042   17.4   8.0  144   19-174    79-250 (293)
213 KOG2902 consensus               55.5      13 0.00034   18.0   3.1  229    3-255    11-299 (344)
214 TIGR02538 type_IV_pilB type IV  55.2      13 0.00033   18.1   3.0  113   12-142   308-441 (577)
215 PRK10528 multifunctional acyl-  55.0      17 0.00045   17.3   4.4   54   73-128    57-113 (191)
216 TIGR02075 pyrH_bact uridylate   54.8      18 0.00045   17.3   7.1  113   26-143    89-228 (236)
217 TIGR01748 rhaA L-rhamnose isom  53.6     8.3 0.00021   19.4   1.8   35   87-121   313-356 (415)
218 PRK12737 gatY tagatose-bisphos  52.8      19 0.00048   17.0   6.3   57  138-194   191-249 (284)
219 KOG2310 consensus               52.8      18 0.00046   17.2   3.4   52    2-53     17-83  (646)
220 COG2176 PolC DNA polymerase II  52.4      19 0.00049   17.0   5.6   18  239-256   828-845 (1444)
221 PTZ00065 60S ribosomal protein  52.3       7 0.00018   19.9   1.2   42  163-211     3-46  (130)
222 PRK13399 fructose-1,6-bisphosp  52.2      19 0.00049   17.0  11.6   80  112-196   214-296 (347)
223 PRK06740 histidinol-phosphatas  52.0      19  0.0005   17.0   4.6   81    1-97      1-81  (338)
224 cd06842 PLPDE_III_Y4yA_like Ty  50.8      20 0.00052   16.8   5.7   45   19-66     93-138 (423)
225 PRK08082 consensus              50.6      20 0.00052   16.8   3.4  129  108-244   215-362 (453)
226 pfam02630 SCO1-SenC SCO1/SenC.  49.6      21 0.00054   16.7   3.6   52  123-176    73-125 (159)
227 COG3384 Aromatic ring-opening   49.5      16  0.0004   17.6   2.7   85   13-99     27-119 (268)
228 pfam01297 SBP_bac_9 Periplasmi  49.0      22 0.00055   16.7   8.0   21   22-44     42-62  (272)
229 TIGR02717 AcCoA-syn-alpha acet  48.8      22 0.00055   16.6   4.2   48   17-64     79-136 (457)
230 pfam04273 DUF442 Putative phos  48.8      15 0.00039   17.7   2.5   41   93-136    55-99  (110)
231 PRK07315 fructose-bisphosphate  48.3      22 0.00057   16.6   4.7   60  137-196   189-251 (293)
232 COG0313 Predicted methyltransf  47.8      23 0.00058   16.5   4.1   23  224-246   249-271 (275)
233 cd01016 TroA Metal binding pro  47.0      23 0.00059   16.5   7.9   12   33-44     28-39  (276)
234 PRK13587 1-(5-phosphoribosyl)-  46.8      23 0.00059   16.4   4.6   14  159-172   202-215 (234)
235 TIGR01178 ade adenine deaminas  46.5      24  0.0006   16.4  10.3  235    2-256    63-312 (575)
236 pfam04183 IucA_IucC IucA / Iuc  46.1     7.6 0.00019   19.7   0.6   68   57-133    86-154 (237)
237 COG1618 Predicted nucleotide k  45.9      24 0.00061   16.3   3.8   50   77-134    92-143 (179)
238 COG3653 N-acyl-D-aspartate/D-g  45.5      24 0.00062   16.3   5.8   34  217-250   376-410 (579)
239 pfam02669 KdpC K+-transporting  44.9      20 0.00051   16.9   2.6   40  220-259   133-173 (188)
240 cd01145 TroA_c Periplasmic bin  44.7      25 0.00064   16.2   7.3   26  188-213   176-201 (203)
241 COG3453 Uncharacterized protei  44.3      19 0.00048   17.1   2.4   44   91-137    54-101 (130)
242 cd06563 GH20_chitobiase-like T  42.3      27  0.0007   16.0  10.1  145   16-177    86-260 (357)
243 pfam07228 SpoIIE Stage II spor  41.9      28 0.00071   15.9   5.9   60  191-254   117-176 (192)
244 TIGR00418 thrS threonyl-tRNA s  41.8      17 0.00044   17.3   1.9  111  120-248   452-593 (595)
245 cd01304 FMDH_A Formylmethanofu  41.7      28 0.00071   15.9   4.5  146  109-256   208-446 (541)
246 PRK13118 consensus              41.6      28 0.00071   15.9   9.7  104  112-227   111-223 (269)
247 PRK00979 tetrahydromethanopter  41.5      28 0.00071   15.9   6.4  143   26-170    66-243 (310)
248 PRK09165 replicative DNA helic  41.5      28 0.00072   15.9   4.4  128  108-243   217-378 (484)
249 PRK08610 fructose-bisphosphate  41.4      28 0.00072   15.9   4.8   59  138-196   192-252 (286)
250 pfam09124 Endonuc-dimeriz T4 r  41.1      18 0.00047   17.1   2.0   52   63-119     1-52  (54)
251 cd06382 PBP1_iGluR_Kainate N-t  41.0      29 0.00073   15.9   3.3   55  112-169   145-199 (327)
252 TIGR03249 KdgD 5-dehydro-4-deo  40.9      29 0.00073   15.8  11.4  105   18-133    28-140 (296)
253 TIGR02311 HpaI 2,4-dihydroxyhe  40.9      26 0.00066   16.1   2.7  142   22-182    77-236 (249)
254 PRK13120 consensus              40.8      29 0.00073   15.8  10.0   21  158-178   161-185 (285)
255 cd06533 Glyco_transf_WecG_TagA  40.7      29 0.00074   15.8   6.4   97   18-133    35-133 (171)
256 KOG1939 consensus               40.6      29 0.00074   15.8   3.1   29  207-235   400-428 (1247)
257 pfam07611 DUF1574 Protein of u  40.1      29 0.00075   15.8   3.7   44  100-143   242-285 (345)
258 TIGR00247 TIGR00247 conserved   39.4      12  0.0003   18.4   0.7   14  201-214   294-314 (373)
259 cd00408 DHDPS-like Dihydrodipi  39.4      30 0.00077   15.7  12.2  104   18-131    20-131 (281)
260 COG1453 Predicted oxidoreducta  39.3      30 0.00077   15.7   9.6   37  217-254   251-287 (391)
261 PRK00915 2-isopropylmalate syn  39.1      30 0.00078   15.7   6.7   27   25-51     35-63  (511)
262 PRK13135 consensus              39.0      31 0.00078   15.7   9.7   65  154-227   152-222 (267)
263 pfam08981 consensus             38.8      31 0.00079   15.6   6.6   67   15-81     11-80  (181)
264 PRK09121 5-methyltetrahydropte  38.7      31 0.00079   15.6   6.3   24  185-208   289-312 (339)
265 TIGR00300 TIGR00300 conserved   38.7     7.5 0.00019   19.7  -0.3  115   53-172    94-240 (418)
266 PRK13305 sgbH 3-keto-L-gulonat  37.8      32 0.00081   15.5  10.5   84  111-202    94-190 (220)
267 pfam00701 DHDPS Dihydrodipicol  37.8      32 0.00081   15.5  12.1  104   17-130    23-134 (289)
268 COG0036 Rpe Pentose-5-phosphat  37.8      32 0.00081   15.5   4.1   82  124-206    86-176 (220)
269 TIGR01859 fruc_bis_ald_ fructo  37.7      32 0.00082   15.5   4.7  184    6-206    85-306 (339)
270 PRK06233 hypothetical protein;  37.6      32 0.00082   15.5   4.7   86  124-212   237-346 (372)
271 PRK13116 consensus              37.2      33 0.00083   15.5  10.2   21  158-178   157-181 (278)
272 pfam08809 DUF1799 Phage relate  36.8      25 0.00065   16.2   2.1   41   59-99      2-49  (83)
273 COG3836 HpcH 2,4-dihydroxyhept  36.7      33 0.00085   15.4   5.5  147   18-181    78-240 (255)
274 cd01017 AdcA Metal binding pro  35.8      34 0.00087   15.3   8.0   21   22-44     47-67  (282)
275 PRK12444 threonyl-tRNA synthet  35.6      35 0.00088   15.3   3.9   56  122-177   506-575 (639)
276 PRK13112 consensus              35.4      35 0.00089   15.3  10.3   47  158-209   158-210 (279)
277 TIGR01579 MiaB-like-C MiaB-lik  35.3      35 0.00089   15.3   2.7  168   72-257   242-446 (492)
278 pfam06187 DUF993 Protein of un  35.2      35 0.00089   15.3   4.8   64   94-157   114-186 (382)
279 cd03315 MLE_like Muconate lact  34.6      36 0.00091   15.2   5.6  133   19-169    90-225 (265)
280 PRK00748 1-(5-phosphoribosyl)-  34.3      36 0.00092   15.2   4.3  175   14-195    27-238 (241)
281 COG2247 LytB Putative cell wal  34.2      36 0.00092   15.2   7.4  121   25-156    23-162 (337)
282 COG1647 Esterase/lipase [Gener  34.2      16 0.00042   17.5   0.8   15  240-254   227-241 (243)
283 COG0329 DapA Dihydrodipicolina  34.1      36 0.00093   15.2  11.9  149   18-179    27-212 (299)
284 TIGR03586 PseI pseudaminic aci  34.0      37 0.00093   15.1   3.8   64  114-179   125-201 (327)
285 TIGR00537 hemK_rel_arch methyl  34.0      34 0.00086   15.4   2.4   46  134-179   123-169 (183)
286 TIGR02716 C20_methyl_CrtF C-20  33.8      37 0.00094   15.1   4.3  154   18-198   138-300 (306)
287 PRK13586 1-(5-phosphoribosyl)-  33.4      37 0.00095   15.1   3.9   50   15-64     28-82  (231)
288 PRK13113 consensus              33.1      38 0.00096   15.0  10.0   26  154-179   153-182 (263)
289 PRK05835 fructose-bisphosphate  33.1      38 0.00096   15.0   4.8   77  112-194   193-272 (307)
290 cd00950 DHDPS Dihydrodipicolin  32.9      38 0.00097   15.0  11.5  104   17-130    22-133 (284)
291 cd01019 ZnuA Zinc binding prot  32.7      38 0.00098   15.0   7.9   22   22-45     47-68  (286)
292 COG0816 Predicted endonuclease  32.6      38 0.00098   15.0   5.5   67   74-143    40-109 (141)
293 PRK00865 glutamate racemase; P  32.6      39 0.00098   15.0   7.5   41   21-65     56-96  (262)
294 pfam04072 LCM Leucine carboxyl  32.6      30 0.00076   15.7   1.9   11   87-98     73-83  (175)
295 pfam05705 DUF829 Eukaryotic pr  32.5      35  0.0009   15.2   2.3   18  221-239   193-210 (239)
296 PRK05748 replicative DNA helic  32.5      39 0.00098   15.0   4.3  131  108-244   215-363 (448)
297 TIGR01093 aroD 3-dehydroquinat  32.3      39 0.00099   15.0   5.3   90   73-165    12-142 (239)
298 PRK09856 fructoselysine 3-epim  32.2      39   0.001   15.0   7.8  123   17-143    14-170 (276)
299 TIGR01856 hisJ_fam histidinol   32.2      39   0.001   14.9   7.5  150    3-163     1-211 (301)
300 pfam03808 Glyco_tran_WecB Glyc  32.1      39   0.001   14.9   6.1  103   18-142    37-141 (172)
301 PRK13129 consensus              32.1      39   0.001   14.9   9.6   68  152-229   152-226 (267)
302 cd02968 SCO SCO (an acronym fo  31.8      40   0.001   14.9   3.7   52  123-176    59-111 (142)
303 TIGR00250 TIGR00250 conserved   31.8      40   0.001   14.9   4.5   77   60-139    23-107 (133)
304 COG1456 CdhE CO dehydrogenase/  31.5      40   0.001   14.9  10.2   32  111-142   147-180 (467)
305 PRK13585 1-(5-phosphoribosyl)-  31.5      40   0.001   14.9   5.5   51   15-65     30-86  (240)
306 pfam02222 ATP-grasp ATP-grasp   31.3      14 0.00036   17.9   0.1   15  116-130    21-35  (171)
307 TIGR02865 spore_II_E stage II   31.3      40   0.001   14.9   4.2  137  109-260   629-785 (794)
308 TIGR02149 glgA_Coryne glycogen  30.9      26 0.00067   16.1   1.4   20   49-68      6-25  (416)
309 PRK07709 fructose-bisphosphate  30.5      42  0.0011   14.8   5.8   59  138-196   192-252 (285)
310 TIGR00676 fadh2 5,10-methylene  30.3      42  0.0011   14.7   3.2  111    5-124    76-213 (302)
311 PRK13114 consensus              30.3      42  0.0011   14.7  10.3   25  154-178   149-177 (266)
312 pfam00390 malic Malic enzyme,   30.2      42  0.0011   14.7   2.6   38  107-144   142-181 (182)
313 pfam02219 MTHFR Methylenetetra  30.1      42  0.0011   14.7   7.0   21   19-39     87-107 (286)
314 pfam00977 His_biosynth Histidi  30.0      42  0.0011   14.7   5.4   51   14-64     27-83  (229)
315 TIGR00963 secA preprotein tran  30.0      16 0.00042   17.5   0.2   18  241-258   357-374 (904)
316 TIGR03121 one_C_dehyd_A formyl  30.0      43  0.0011   14.7   3.7   52  109-160   212-278 (556)
317 pfam02007 MtrH Tetrahydrometha  29.8      43  0.0011   14.7   6.4  142   27-170    62-238 (296)
318 pfam00290 Trp_syntA Tryptophan  29.8      43  0.0011   14.7   9.8   25  154-178   145-173 (258)
319 PRK13753 dihydropteroate synth  29.8      43  0.0011   14.7   6.6   16  116-131   112-128 (279)
320 smart00732 YqgFc Likely ribonu  29.6      43  0.0011   14.7   4.0   57   71-130    35-91  (99)
321 COG0623 FabI Enoyl-[acyl-carri  29.6      43  0.0011   14.7   3.9   55  113-169    46-106 (259)
322 pfam03141 DUF248 Putative meth  29.2      29 0.00075   15.8   1.4   70  109-182   148-223 (506)
323 PRK13111 trpA tryptophan synth  29.2      44  0.0011   14.6  10.1   23  156-178   146-172 (256)
324 TIGR01326 OAH_OAS_sulfhy O-ace  29.2      44  0.0011   14.6   4.6  134   25-182    68-222 (434)
325 PRK13117 consensus              29.1      44  0.0011   14.6   9.7  105  112-228   111-224 (268)
326 TIGR02033 D-hydantoinase dihyd  29.1      44  0.0011   14.6   6.2  167   87-258   201-391 (466)
327 PRK06321 replicative DNA helic  28.7      45  0.0011   14.6   4.9  129  108-244   238-387 (472)
328 COG3394 Uncharacterized protei  28.6      45  0.0011   14.5   9.2   52   15-69     15-66  (257)
329 TIGR02701 shell_carb_anhy carb  28.3      14 0.00036   17.9  -0.3   75  151-234   341-437 (463)
330 pfam03102 NeuB NeuB family. Ne  27.9      46  0.0012   14.5   3.4   61  116-178   106-179 (240)
331 TIGR00294 TIGR00294 conserved   27.9      46  0.0012   14.5   2.3   83  152-241    92-183 (323)
332 cd03328 MR_like_3 Mandelate ra  27.7      46  0.0012   14.5   5.9   21  110-130   273-293 (352)
333 COG1492 CobQ Cobyric acid synt  27.6      17 0.00043   17.4  -0.0   64  117-180   151-227 (486)
334 pfam11220 DUF3015 Protein of u  27.5      47  0.0012   14.4   3.5   32  226-257    84-118 (144)
335 TIGR00014 arsC arsenate reduct  27.3      47  0.0012   14.4   2.4   37   92-133    65-101 (114)
336 TIGR03099 dCO2ase_PEP1 pyridox  27.1      48  0.0012   14.4   5.8   42   22-66    108-149 (398)
337 KOG3484 consensus               27.0      18 0.00046   17.2   0.0   21  189-209    26-46  (91)
338 PRK05595 replicative DNA helic  26.6      49  0.0012   14.3   5.3  130  108-245   213-360 (444)
339 TIGR03573 WbuX N-acetyl sugar   26.6      49  0.0012   14.3   8.4  106   16-133    43-170 (343)
340 cd01319 AMPD AMP deaminase (AM  26.4      49  0.0012   14.3   2.9   63    3-67     61-127 (496)
341 cd01533 4RHOD_Repeat_2 Member   26.3      49  0.0012   14.3   2.1   22  151-172    68-91  (109)
342 cd01137 PsaA Metal binding pro  26.2      49  0.0013   14.3   7.3   11   33-43     70-80  (287)
343 COG1242 Predicted Fe-S oxidore  26.1      49  0.0013   14.3   7.4  154   43-208   102-271 (312)
344 COG1590 Uncharacterized conser  26.1      50  0.0013   14.3   5.9   96  123-231    65-170 (208)
345 COG1751 Uncharacterized conser  25.9      50  0.0013   14.2   5.4   68   15-82     13-82  (186)
346 pfam03652 UPF0081 Uncharacteri  25.9      50  0.0013   14.2   5.7   70   71-143    35-107 (134)
347 KOG1717 consensus               25.3      45  0.0011   14.5   1.8   28  134-162   237-264 (343)
348 PRK05301 pyrroloquinoline quin  25.3      51  0.0013   14.2   4.6  116   16-141    50-176 (375)
349 TIGR00856 pyrC_dimer dihydroor  25.3      51  0.0013   14.2   3.8  232    3-255     8-317 (364)
350 PRK03620 5-dehydro-4-deoxygluc  24.9      52  0.0013   14.1  10.9  140   17-170    23-173 (296)
351 TIGR02495 NrdG2 anaerobic ribo  24.6      53  0.0013   14.1   3.5   39   26-64     60-99  (220)
352 PRK08883 ribulose-phosphate 3-  24.5      53  0.0013   14.1   4.4   11  159-169   117-127 (220)
353 KOG2368 consensus               24.5      37 0.00095   15.1   1.3   81  104-204   128-220 (316)
354 PRK13133 consensus              24.5      53  0.0014   14.1  10.0   13  158-170   159-171 (267)
355 PRK13119 consensus              24.4      53  0.0014   14.1  10.2   15  156-170   153-167 (261)
356 PRK10859 putative transglycosy  24.3      53  0.0014   14.0   5.2   15   21-35     35-49  (507)
357 COG1533 SplB DNA repair photol  24.3      53  0.0014   14.0   7.0  117   73-193    66-206 (297)
358 cd06839 PLPDE_III_Btrk_like Ty  24.2      54  0.0014   14.0   4.7   31   21-53     89-119 (382)
359 pfam07745 Glyco_hydro_53 Glyco  24.2      54  0.0014   14.0  11.1   24  186-209   219-242 (332)
360 KOG2792 consensus               24.0      40   0.001   14.9   1.3   68  108-178   158-230 (280)
361 cd04729 NanE N-acetylmannosami  24.0      54  0.0014   14.0   2.6   45  138-182   166-211 (219)
362 pfam00834 Ribul_P_3_epim Ribul  23.9      54  0.0014   14.0   4.2   99  120-235    54-157 (201)
363 TIGR02250 FCP1_euk FCP1-like p  23.6      34 0.00087   15.3   0.9   25  152-176    85-114 (170)
364 TIGR00734 hisAF_rel hisA/hisF   23.5      55  0.0014   14.0   3.4  151   15-173    35-217 (230)
365 TIGR01520 FruBisAldo_II_A fruc  23.2      33 0.00085   15.4   0.8   23  149-171   265-288 (365)
366 pfam05706 CDKN3 Cyclin-depende  23.2      51  0.0013   14.2   1.7   10  150-159   134-143 (207)
367 TIGR01420 pilT_fam twitching m  23.1      56  0.0014   13.9   2.8   61   70-143   184-247 (350)
368 cd04724 Tryptophan_synthase_al  23.0      57  0.0014   13.9  10.0   26  153-178   134-163 (242)
369 TIGR02712 urea_carbox urea car  22.8      48  0.0012   14.4   1.5  165   38-235    57-264 (1226)
370 PRK04148 hypothetical protein;  22.8      24 0.00062   16.3   0.0   25  110-134    89-113 (135)
371 cd06840 PLPDE_III_Bif_AspK_Dap  22.7      57  0.0015   13.8   4.8   12  114-125   160-171 (368)
372 KOG2707 consensus               22.6      57  0.0015   13.8   2.7   78   61-142    71-154 (405)
373 PRK08506 replicative DNA helic  22.6      58  0.0015   13.8   4.7  129  108-244   205-351 (473)
374 COG4826 Serine protease inhibi  22.5      50  0.0013   14.3   1.6   10  187-196   283-292 (410)
375 cd06368 PBP1_iGluR_non_NMDA_li  22.5      58  0.0015   13.8   3.2   55  112-169   143-198 (324)
376 PRK06019 phosphoribosylaminoim  22.5      58  0.0015   13.8   3.5   48  160-209   176-225 (377)
377 pfam01261 AP_endonuc_2 Xylose   22.4      58  0.0015   13.8   7.6   22  109-130   102-123 (201)
378 COG1154 Dxs Deoxyxylulose-5-ph  22.4      58  0.0015   13.8   2.6   22  109-130   451-473 (627)
379 PRK00109 Holliday junction res  22.2      58  0.0015   13.8   5.5   69   72-143    39-110 (141)
380 TIGR00315 cdhB CO dehydrogenas  22.2      59  0.0015   13.8   2.5   57   61-128     5-62  (170)
381 pfam07700 HNOB Heme NO binding  22.1      59  0.0015   13.8   5.5   12  116-127    53-64  (171)
382 pfam00549 Ligase_CoA CoA-ligas  22.1      59  0.0015   13.8   3.5   69   62-136    19-96  (128)
383 pfam01799 Fer2_2 [2Fe-2S] bind  22.0      59  0.0015   13.8   2.1   37  217-253    27-63  (75)
384 PRK08694 consensus              21.9      59  0.0015   13.7   4.3  129  108-244   230-378 (468)
385 TIGR00421 ubiX_pad polyprenyl   21.8      39 0.00098   15.0   0.9   83  153-241    81-177 (181)
386 TIGR01264 tyr_amTase_E tyrosin  21.8      60  0.0015   13.7   4.2  133   33-177   107-269 (415)
387 PRK07106 5-aminoimidazole-4-ca  21.7      60  0.0015   13.7   3.3   18   38-55     39-56  (391)
388 pfam08569 Mo25 Mo25-like. Mo25  21.6      59  0.0015   13.8   1.8   75  185-261   143-217 (334)
389 COG0648 Nfo Endonuclease IV [D  21.3      61  0.0016   13.7   5.3  136   60-205   103-259 (280)
390 PTZ00066 pyruvate kinase; Prov  21.2      61  0.0016   13.6   9.2  103   15-130   209-315 (513)
391 COG4623 Predicted soluble lyti  21.2      61  0.0016   13.6   3.5   31  111-141   139-169 (473)
392 smart00518 AP2Ec AP endonuclea  21.0      62  0.0016   13.6   5.9   46    6-54      3-58  (273)
393 PRK13127 consensus              21.0      62  0.0016   13.6  10.3  104  112-227   104-216 (262)
394 pfam03266 DUF265 Protein of un  21.0      62  0.0016   13.6   3.9   59   76-143    86-146 (168)
395 COG0352 ThiE Thiamine monophos  20.9      62  0.0016   13.6   4.9   78   99-179    40-133 (211)
396 cd00308 enolase_like Enolase-s  20.9      62  0.0016   13.6   6.9   26  117-142   139-165 (229)
397 cd06387 PBP1_iGluR_AMPA_GluR3   20.8      62  0.0016   13.6   3.4   56  111-169   139-197 (372)
398 COG0159 TrpA Tryptophan syntha  20.7      63  0.0016   13.6   9.9   28  152-179   151-182 (265)
399 cd00946 FBP_aldolase_IIA Class  20.7      63  0.0016   13.6   4.6   46  149-194   245-292 (345)
400 TIGR02080 O_succ_thio_ly O-suc  20.6      63  0.0016   13.6   4.1   48  155-206    98-147 (383)
401 cd00951 KDGDH 5-dehydro-4-deox  20.5      63  0.0016   13.6  11.3  105   17-132    22-134 (289)
402 PRK11823 DNA repair protein Ra  20.5      55  0.0014   14.0   1.5   54  107-169   191-250 (454)
403 PRK08760 replicative DNA helic  20.5      63  0.0016   13.5   3.8  130  108-245   241-388 (476)
404 PRK09722 allulose-6-phosphate   20.4      63  0.0016   13.5   4.2   81  125-206    83-174 (227)
405 COG2602 Beta-lactamase class D  20.1      65  0.0016   13.5   3.2   71   92-177   140-214 (254)
406 PRK13139 consensus              20.0      65  0.0017   13.5  10.1   23  156-178   153-179 (254)
407 pfam06555 consensus             20.0      65  0.0017   13.5   3.2   26   72-97     20-51  (200)

No 1  
>TIGR00010 TIGR00010 hydrolase, TatD family; InterPro: IPR015991   Escherichia coli TatD (synonym MttC) has been shown experimentally to be a DNase . On the basis of operon structure, it was originally thought to be involved in the Sec-independent export of protein precursors bearing twin arginine signal peptides by the Tat system . This alternative membrane targeting and translocation system (Mtt), also called twin arginine translocase (Tat) (MttA1A2BC or TatABCD), has been shown to transport fully folded proteins to, or across, the membrane , . However, it was later determined that TatD is not required for this translocation process , . Furthermore, it was noted that no exact correlation exists between the ability of an organism to synthesise a TatD-like protein and whether that organism has a Tat protein transport pathway . Also, with the exception of Escherichia coli , the genetic linkage between TatD and other Tat genes (operon structure) is not maintained.  Members of this group may be distantly related to a large 3D fold-based domain superfamily of metalloenzymes . The description of this fold superfamily was based on an analysis of conservation patterns in three dimensions, and the discovery that the same active-site architecture occurs in a large set of enzymes involved primarily in nucleotide metabolism. The group is thought to include urease, dihydroorotase, allantoinase, hydantoinase, AMP-, adenine- and cytosine- deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolase, formylmethanofuran dehydrogenase, and other enzymes ..
Probab=100.00  E-value=0  Score=584.92  Aligned_cols=254  Identities=42%  Similarity=0.723  Sum_probs=245.1

Q ss_pred             EEEEECCCCCHHHHC---CHHHHHHHHHHCCCCEEEEECCCHHHHH-HHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHH
Q ss_conf             168613888756522---6899999999869989999167987789-99999985572-332112445443344678899
Q gi|254780215|r    2 LIDTHCHLLLPDFDE---DRHDVIMRAHQANVLKMIAIAIKVKDFV-PLIKLCQDYPS-SIFCSVGTHPCHAHEENEVLV   76 (262)
Q Consensus         2 ~iD~H~HL~~~~~~~---d~~~~i~~a~~~gv~~~i~~~~~~~~~~-~~~~l~~~~p~-~i~~a~GiHP~~~~~~~~~~~   76 (262)
                      +|||||||+...+.+   |++++++||+..||..++.+|+++.++. ++.+++++||+ +||+|+|+||+.+.+..+.+.
T Consensus         1 ~~D~HcHL~~~~~~~~~~d~~~v~~ra~~~~v~~~v~vg~~l~~~~W~~~~l~~~~~g~~v~~~~G~HP~d~~~~~~~~~   80 (269)
T TIGR00010         1 LIDAHCHLDLLDFEELHVDVEEVIERAKAEGVTAVVDVGTDLEDLNWRALELAEKYPGDNVYAAVGVHPLDVEDDTKEDI   80 (269)
T ss_pred             CCCCEECCCCCCCCHHCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             91100135622221220358999999997499299973467002069999999847997699982268722204208999


Q ss_pred             HHHHHHC--CCCCCCEECCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHH--HHCCCC
Q ss_conf             8853100--1333210044677553322111--024678999987664204420330002333579998531--000367
Q gi|254780215|r   77 DELVCLA--SHPRVVAIGETGLDRYHNAHTI--EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEE--MKKGPF  150 (262)
Q Consensus        77 ~~l~~l~--~~~~~~aIGEiGLD~~~~~~~~--e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~--~~~~~~  150 (262)
                      +++.+++  ..++|+||||+|||||+..+..  +.|+++|++||+||.+++|||+||+|+|++++++||+++  .+....
T Consensus        81 ~~l~~l~~~~~~~v~AiGE~GLDY~~~~~~~e~~~Q~e~F~~q~~lA~~~~~P~iiH~RdA~~d~~~iL~~~y~~~~~~~  160 (269)
T TIGR00010        81 KELEKLAKNAHPKVVAIGETGLDYYKADEKKERRRQKEVFRAQLQLAEELNLPVIIHARDAEEDVLDILREYYAEKAPKV  160 (269)
T ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999998506954798510440430687521789999999999999971996899788457999999999984278778


Q ss_pred             CCCCEECCCCHHHHHHHHCCC---CEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             533112146402344321035---20202332211333223333210566717983078667877768875882449999
Q gi|254780215|r  151 PFVIHCFSSSQKLADICLELG---GYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNT  227 (262)
Q Consensus       151 ~~i~H~FsG~~~~~~~~l~~g---~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~  227 (262)
                      ++|||||||+.+++++++++|   |||||||.|||++++.+|++|+.+|+||||+|||||||+|.|+||++|+|.++..|
T Consensus       161 ~g~~HCftg~~E~a~~~ld~gd~~~yiSisG~vTFknA~~l~~~v~~iP~e~LL~ETDSPyLaP~P~RGK~N~P~~v~~v  240 (269)
T TIGR00010       161 GGVLHCFTGDAELAKKLLDLGDLLFYISISGIVTFKNAKSLREVVKKIPLERLLVETDSPYLAPVPYRGKRNEPAFVRYV  240 (269)
T ss_pred             CEEEEECCCCHHHHHHHHCCCCEEEEEECCCCEEEECCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             75798148888999999606987999972860221062678999974596432320167445788988985674059999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9999987289989999999999999842
Q gi|254780215|r  228 AKALAKEKDVSYEDLMEETTKNALKLFS  255 (262)
Q Consensus       228 ~~~iA~i~~~~~eei~~~~~~N~~~~f~  255 (262)
                      ++.||+||+++++||+++|++|++++|+
T Consensus       241 ~~~iAeik~~~~ee~~~~~t~N~~~lF~  268 (269)
T TIGR00010       241 VEAIAEIKGIDLEELAQITTKNAKRLFK  268 (269)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf             9999988388999999999999999845


No 2  
>PRK10812 putative metallodependent hydrolase; Provisional
Probab=100.00  E-value=0  Score=549.49  Aligned_cols=257  Identities=39%  Similarity=0.606  Sum_probs=238.3

Q ss_pred             CEEEEECCCCCHH---HHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             9168613888756---5226899999999869989999167987789999999855723321124454433446788998
Q gi|254780215|r    1 MLIDTHCHLLLPD---FDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVD   77 (262)
Q Consensus         1 M~iD~H~HL~~~~---~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~   77 (262)
                      |||||||||+...   +.+|+++++++|.++||.+++++|+++++|.++++++++|| .+++++|+||+++.+..  .++
T Consensus         2 ~liDtHcHLd~~~~~~~~~d~~~vl~~a~~~gV~~~i~~g~~~~~~~~~~~l~~~~~-~i~~a~GiHP~~~~~~~--~~~   78 (265)
T PRK10812          2 FLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTLPGYLHMRDLVGERD-NVVFSCGVHPLNQDEPY--DVE   78 (265)
T ss_pred             EEEEECCCCCCCCCCCHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCHH--HHH
T ss_conf             589953589832154101399999999998699889995399899999999985399-81799504857668631--099


Q ss_pred             HHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEEC
Q ss_conf             85310013332100446775533221110246789999876642044203300023335799985310003675331121
Q gi|254780215|r   78 ELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCF  157 (262)
Q Consensus        78 ~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~F  157 (262)
                      .++.++.+++++|||||||||+++.++++.|+++|++||+||++++|||+||||+|+++++++|+++.. ...++|+|||
T Consensus        79 ~l~~l~~~~~vvAIGEiGLDy~~~~~~~~~Q~~~F~~ql~lA~~~~lPviiH~R~A~~d~~~iLk~~~~-~~~~gv~HcF  157 (265)
T PRK10812         79 DLRRLAAEEGVVAMGETGLDYFYTPETKVRQQASFIHHIQIGRELNKPVIVHTRDARADTLAILREEKV-TDCGGVLHCF  157 (265)
T ss_pred             HHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCC-CCCCEEEECC
T ss_conf             999985189938985057999999987999999999999999974798699855434899999998247-7767277607


Q ss_pred             CCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             46402344321035202023322113332233332105667179830786678777688758824499999999987289
Q gi|254780215|r  158 SSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDV  237 (262)
Q Consensus       158 sG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~  237 (262)
                      ||+.+++++++++||||||||.+||++++++|++++.+|+||||+|||||||+|.|+||++|+|++|+.|++++|++|++
T Consensus       158 sGs~e~a~~~l~lG~yis~~g~it~~~a~~lr~~~~~iPldrlLlETDsPyl~P~p~rg~~NeP~~i~~v~~~iA~i~~~  237 (265)
T PRK10812        158 TEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGV  237 (265)
T ss_pred             CCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             89999999999649966356523310569999999859935579714788778777799989779999999999987598


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9899999999999998425687509
Q gi|254780215|r  238 SYEDLMEETTKNALKLFSKISECVV  262 (262)
Q Consensus       238 ~~eei~~~~~~N~~~~f~~~~~~~~  262 (262)
                      +++++++++++|++++|+ ++.+.|
T Consensus       238 ~~eev~~~t~~Na~~lF~-l~~~~~  261 (265)
T PRK10812        238 AVEELAQVTTDNFARLFH-IDASRL  261 (265)
T ss_pred             CHHHHHHHHHHHHHHHHC-CCHHHC
T ss_conf             999999999999999949-986645


No 3  
>PRK10425 DNase TatD; Provisional
Probab=100.00  E-value=0  Score=548.30  Aligned_cols=252  Identities=31%  Similarity=0.489  Sum_probs=239.9

Q ss_pred             EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             16861388875652268999999998699899991679877899999998557233211244544334467889988531
Q gi|254780215|r    2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVC   81 (262)
Q Consensus         2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~   81 (262)
                      |||+||||++..|++|++++++||+++||.+++++|+++++|.++++++++||+ +|+++|+|||++.++.+...+.+..
T Consensus         1 liDtH~HL~~~~f~~d~~~vl~rA~~~gV~~ii~~g~~~~~~~~~~~la~~~~~-v~~~~GiHP~~~~~~~~~~~~~l~~   79 (258)
T PRK10425          1 MFDIGVNLTSSQFAKDRDDVVARAFAAGVNGLLITGTNLRESQQAQKLARQYPS-CWSTAGVHPHDSSQWQAATEEAIIE   79 (258)
T ss_pred             CEEEEECCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHCCHHHHHHHHH
T ss_conf             977775889877757899999999987999899946999999999999986887-3598335812332368578999999


Q ss_pred             HCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCH
Q ss_conf             00133321004467755332211102467899998766420442033000233357999853100036753311214640
Q gi|254780215|r   82 LASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQ  161 (262)
Q Consensus        82 l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~  161 (262)
                      ++.+++++|||||||||+++.++.+.|+++|++||+||++++|||+||||+|+++++++|+++.... .++|+|||||+.
T Consensus        80 ~~~~~~~vAIGEiGLDy~~~~~~~~~Q~~~F~~ql~lA~~~~lPviiH~R~A~~~~l~iL~~~~~~~-~~~v~HcFsGs~  158 (258)
T PRK10425         80 LAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAAELNMPVFMHCRDAHERFLTLLEPWLDKL-PGAVLHCFTGTR  158 (258)
T ss_pred             HHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCC-CCCEEEECCCCH
T ss_conf             8548982799612216775689999999999999999999799879996441589999999971668-673343068999


Q ss_pred             HHHHHHHCCCCEEECCCCCC-HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHHC
Q ss_conf             23443210352020233221-133322333321056671798307866787776887----5882449999999998728
Q gi|254780215|r  162 KLADICLELGGYISFTGMIT-FPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGK----RNEPAYVVNTAKALAKEKD  236 (262)
Q Consensus       162 ~~~~~~l~~g~y~S~~g~i~-~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~----~n~P~~i~~~~~~iA~i~~  236 (262)
                      +++++++++||||||||.+| ++++.++|++++.+|+||||+|||||||+|.|+||+    +|+|++++.|++++|++||
T Consensus       159 e~a~~~l~~G~yis~~G~i~~~~~~~~lr~~v~~iPldrlLlETDsPyl~P~~~~~k~~~~rNeP~~v~~v~~~iA~l~~  238 (258)
T PRK10425        159 EEMQACVARGLYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWRG  238 (258)
T ss_pred             HHHHHHHHCCCEEEECCCEECCCCCHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             99999997492898636120364306899999849987979835588888867789989998770689999999997759


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q ss_conf             9989999999999999842
Q gi|254780215|r  237 VSYEDLMEETTKNALKLFS  255 (262)
Q Consensus       237 ~~~eei~~~~~~N~~~~f~  255 (262)
                      +++++++++|++|+++|||
T Consensus       239 ~~~eela~~t~~Na~~lF~  257 (258)
T PRK10425        239 EDAAWLAATTDANARTLFG  257 (258)
T ss_pred             CCHHHHHHHHHHHHHHHHC
T ss_conf             6999999999999999849


No 4  
>cd01310 TatD_DNAse TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=100.00  E-value=0  Score=540.65  Aligned_cols=251  Identities=45%  Similarity=0.737  Sum_probs=242.7

Q ss_pred             EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             16861388875652268999999998699899991679877899999998557233211244544334467889988531
Q gi|254780215|r    2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVC   81 (262)
Q Consensus         2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~   81 (262)
                      |||+||||++..|..|+++++++|.++||.+++++|+++.+|.++++++++|| .+++|+|+|||++.+..+..++.+..
T Consensus         1 lIDsHcHL~~~~~~~d~~~vi~~a~~~gv~~ii~~~~~~~~~~~~~~la~~~~-~i~~~~GiHP~~~~~~~~~~~~~l~~   79 (251)
T cd01310           1 LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTDLKSSKRALELAKKYD-NVYAAVGLHPHDADEHVDEDLDLLEL   79 (251)
T ss_pred             CEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCC-CEEEEECCCHHHHHHCCHHHHHHHHH
T ss_conf             97850488981444699999999998699889996899999999999997599-86898236837651235779999999


Q ss_pred             HCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCH
Q ss_conf             00133321004467755332211102467899998766420442033000233357999853100036753311214640
Q gi|254780215|r   82 LASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQ  161 (262)
Q Consensus        82 l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~  161 (262)
                      ++.+++++|||||||||++..++++.|+++|++||+||++++|||+||||+|+++++++|+++.  ...++|+|||||+.
T Consensus        80 ~~~~~~~vaIGEiGLD~~~~~~~~~~Q~~~F~~ql~lA~~~~lPv~iH~R~A~~~~l~iL~~~~--~~~~~v~H~fsG~~  157 (251)
T cd01310          80 LAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDAHEDVLEILKEYG--PPKRGVFHCFSGSA  157 (251)
T ss_pred             HHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC--CCCCEEEEECCCCH
T ss_conf             9728990699850148888899899999999999999987578848986454799999999708--88773888568999


Q ss_pred             HHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             23443210352020233221133322333321056671798307866787776887588244999999999872899899
Q gi|254780215|r  162 KLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYED  241 (262)
Q Consensus       162 ~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~ee  241 (262)
                      +++++++++||||||||.+||++++++|++++.+|+||||+|||||||+|.|+||++|+|++|+.|++.+|++|++++++
T Consensus       158 ~~a~~~l~~G~yisi~g~it~~~~~~~~~~~~~iPldrlllETDsP~l~p~~~~g~~NeP~~i~~v~~~lA~i~~~~~~e  237 (251)
T cd01310         158 EEAKELLDLGFYISISGIVTFKNANELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIAELKGISVEE  237 (251)
T ss_pred             HHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf             99998611890895374111424899999998599522898258977786677999997289999999999884989999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999842
Q gi|254780215|r  242 LMEETTKNALKLFS  255 (262)
Q Consensus       242 i~~~~~~N~~~~f~  255 (262)
                      +++++++|+++|||
T Consensus       238 l~~~~~~N~~~lFG  251 (251)
T cd01310         238 VAEVTTENAKRLFG  251 (251)
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99999999998659


No 5  
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=100.00  E-value=0  Score=539.03  Aligned_cols=251  Identities=29%  Similarity=0.500  Sum_probs=237.7

Q ss_pred             EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             16861388875652268999999998699899991679877899999998557233211244544334467889988531
Q gi|254780215|r    2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVC   81 (262)
Q Consensus         2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~   81 (262)
                      |||+||||++..|+.|+++++++|+++||.+++++|+++++|.++++++++||+ +++|+|+|||++.+..+...+.+..
T Consensus         5 ~iDtH~HL~~~~~~~d~~~vi~~a~~~gv~~i~~~g~~~~~~~~~~~l~~~~~~-i~~~vGiHP~~~~~~~~~~~~~l~~   83 (258)
T PRK11449          5 FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAANFARVLALAERYQP-LYAALGLHPGMLEKHSDVSLDQLQQ   83 (258)
T ss_pred             EEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC-CEEECCCCCCHHHCCCCCCHHHHHH
T ss_conf             798611799815476999999999982999999934999999999999875963-0187058976111057005999999


Q ss_pred             HCC-C-CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCC
Q ss_conf             001-3-33210044677553322111024678999987664204420330002333579998531000367533112146
Q gi|254780215|r   82 LAS-H-PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSS  159 (262)
Q Consensus        82 l~~-~-~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG  159 (262)
                      ++. + ++++||||||||||++.++.+.|+++|++||+||.+++|||+||||+|+++++++|+++  ..+.++|+|||||
T Consensus        84 ~l~~~~~~vvaIGEiGLDy~~~~~~~~~Q~~~F~~ql~lA~~~~lPvviH~R~A~~~~~~~l~~~--~~~~~gi~H~FsG  161 (258)
T PRK11449         84 ALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRH--DLPRTGVVHGFSG  161 (258)
T ss_pred             HHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHC--CCCCCCEEEECCC
T ss_conf             99818787899834564778899869999999999999999849975986221379999999855--8885754762789


Q ss_pred             CHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf             40234432103520202332211333223333210566717983078667877768875882449999999998728998
Q gi|254780215|r  160 SQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSY  239 (262)
Q Consensus       160 ~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~  239 (262)
                      +.+++++++++||||||||++||++++++|++++.+|+||||+|||||||+|.|+||++|+|.+++.|+++||++|++++
T Consensus       162 ~~~~a~~~l~~G~yiS~~g~it~~~~~~~~~~v~~iPldrll~ETDsPyl~p~~~rg~~NeP~~i~~v~~~iA~ik~~~~  241 (258)
T PRK11449        162 SLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDVLCELRPEPA  241 (258)
T ss_pred             CHHHHHHHHHCCCEEEECEEEECCCCHHHHHHHHHCCCHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf             99999999976982876548634677999999995991568993369999899999998861899999999998869799


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999842
Q gi|254780215|r  240 EDLMEETTKNALKLFS  255 (262)
Q Consensus       240 eei~~~~~~N~~~~f~  255 (262)
                      +++++++++|++||||
T Consensus       242 eev~~~~~~N~~~lF~  257 (258)
T PRK11449        242 DEIAEVLLNNTYTLFR  257 (258)
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             9999999999999859


No 6  
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=100.00  E-value=0  Score=536.47  Aligned_cols=253  Identities=47%  Similarity=0.782  Sum_probs=241.3

Q ss_pred             CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             91686138887565226899999999869989999167987789999999855723321124454433446788998853
Q gi|254780215|r    1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELV   80 (262)
Q Consensus         1 M~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~   80 (262)
                      ||||+||||++..|..|+++++++|.++||..++.+|++.+++..+++++++|| ++|+++|+||++..+..+..++.|.
T Consensus         2 ~liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~-~v~~~~G~HP~~~~~~~~~~~~~l~   80 (256)
T COG0084           2 MLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYP-NVYAAVGVHPLDADEHSEEDLEELE   80 (256)
T ss_pred             CCEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf             627850578803326899999999998599379996158888899999998689-8689986688733336788999999


Q ss_pred             HHCCC-CCCCEECCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECC
Q ss_conf             10013-332100446775533221-1102467899998766420442033000233357999853100036753311214
Q gi|254780215|r   81 CLASH-PRVVAIGETGLDRYHNAH-TIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFS  158 (262)
Q Consensus        81 ~l~~~-~~~~aIGEiGLD~~~~~~-~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~Fs  158 (262)
                      .++.. ++++|||||||||++... +++.|+++|++||+||++++|||+||+|+|+++++++|+++..  +.++|+||||
T Consensus        81 ~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~--~~~gi~HcFs  158 (256)
T COG0084          81 QLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGA--PVGGVLHCFS  158 (256)
T ss_pred             HHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCC--CCCEEEECCC
T ss_conf             98721898589983346856566644789999999999999973997799867427999999986487--8888998378


Q ss_pred             CCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             64023443210352020233221133322333321056671798307866787776887588244999999999872899
Q gi|254780215|r  159 SSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVS  238 (262)
Q Consensus       159 G~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~  238 (262)
                      |+.+++++++++||||||||++||++++++|++++.+|+||||+|||||||+|.|+||++|+|.++..|++++|++||++
T Consensus       159 Gs~e~a~~~~d~G~yisisG~itfk~a~~~~ev~~~iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~~v~~~iAelk~~~  238 (256)
T COG0084         159 GSAEEARKLLDLGFYISISGIVTFKNAEKLREVARELPLDRLLLETDAPYLAPVPYRGKRNEPAYVRHVAEKLAELKGIS  238 (256)
T ss_pred             CCHHHHHHHHHCCEEEEECCEEECCCCHHHHHHHHHCCHHHEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             97999999997692899786664178588999999599767686457988888777999999647999999999875979


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999998425
Q gi|254780215|r  239 YEDLMEETTKNALKLFSK  256 (262)
Q Consensus       239 ~eei~~~~~~N~~~~f~~  256 (262)
                      .+++++++++|++++|+.
T Consensus       239 ~eeva~~t~~N~~~lf~~  256 (256)
T COG0084         239 AEEVAEITTENAKRLFGL  256 (256)
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             999999999999998568


No 7  
>pfam01026 TatD_DNase TatD related DNase. This family of proteins are related to a large superfamily of metalloenzymes. TatD, a member of this family has been shown experimentally to be a DNase enzyme.
Probab=100.00  E-value=0  Score=524.97  Aligned_cols=252  Identities=44%  Similarity=0.757  Sum_probs=239.7

Q ss_pred             EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             68613888756522689999999986998999916798778999999985572332112445443344678899885310
Q gi|254780215|r    3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCL   82 (262)
Q Consensus         3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l   82 (262)
                      ||+||||+...|..|+++++++|.++||.+++++|+++.+|.++++++++||+.|++++|+|||++.+..+.+.+.+..+
T Consensus         1 iD~H~HL~~~~~~~d~~~vl~~a~~~gv~~ii~~~~~~~~~~~~~~la~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~   80 (255)
T pfam01026         1 IDAHCHLDFKKFDGDRDEVIERAREAGVTAVVVVGTDLKDFERALELARKYPGKVYAAVGVHPHEADEASEEVLEALEKL   80 (255)
T ss_pred             CEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCHHHHHHHHHH
T ss_conf             94313789814356999999999987999899956999999999999976876678995358101151688999999999


Q ss_pred             --CCCCCCCEECCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCC
Q ss_conf             --013332100446775533-22111024678999987664204420330002333579998531000367533112146
Q gi|254780215|r   83 --ASHPRVVAIGETGLDRYH-NAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSS  159 (262)
Q Consensus        83 --~~~~~~~aIGEiGLD~~~-~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG  159 (262)
                        ...++++|||||||||++ +.++++.|+++|++||+||+++++||+||||+|+++++++|+++... ..++|+|||||
T Consensus        81 ~~~~~~~~vaIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~~~~lPvilH~r~a~~~~~~il~~~~~~-~~~~v~H~fsG  159 (255)
T pfam01026        81 KLAEHPKVVAIGEIGLDYYYVDESPKEAQEEVFRRQLELAKELDLPVVIHTRDAEEDLLEILKEAGAP-GLRVVLHCFTG  159 (255)
T ss_pred             HHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCC-CCCEEEEECCC
T ss_conf             74358987999801357765799989999999999999998708974898455399999999982677-88557776789


Q ss_pred             CHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf             40234432103520202332211333223333210566717983078667877768875882449999999998728998
Q gi|254780215|r  160 SQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSY  239 (262)
Q Consensus       160 ~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~  239 (262)
                      +.+++++++++||||||||.+||+++++++++++.+|+||||+||||||++|.|+||++|+|++++.|++++|++++++.
T Consensus       160 ~~~~~~~~~~~g~~~s~~g~i~~~~~~~~~~~~~~iPl~rlllETD~P~l~p~~~rg~~NeP~~v~~v~~~iA~~~~~~~  239 (255)
T pfam01026       160 SLETAKEILDLGFYISISGIVTFKNAEELREVVAEIPLDRLLVETDAPYLAPVPYRGKRNEPAYVPHVAEKLAELKGISE  239 (255)
T ss_pred             CHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf             99999999968956986013146047999999974996259983589877877789998887999999999998859899


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999842
Q gi|254780215|r  240 EDLMEETTKNALKLFS  255 (262)
Q Consensus       240 eei~~~~~~N~~~~f~  255 (262)
                      +++++++++|+++|||
T Consensus       240 e~v~~~~~~N~~~lFG  255 (255)
T pfam01026       240 EEVAKITTENAKRLFG  255 (255)
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             9999999999998649


No 8  
>KOG3020 consensus
Probab=100.00  E-value=0  Score=413.77  Aligned_cols=253  Identities=37%  Similarity=0.576  Sum_probs=236.4

Q ss_pred             CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH-----H
Q ss_conf             91686138887565226899999999869989999167987789999999855723321124454433446788-----9
Q gi|254780215|r    1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEV-----L   75 (262)
Q Consensus         1 M~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~-----~   75 (262)
                      |+.|.|||+.......+.+.++.+|...|+..++.+|++..++..+++++++||+.+++++|+|||++.++.+.     .
T Consensus        17 ~~~~~~~~~~~~~~~~d~s~v~~~a~~~~v~~~~v~gt~~~d~~~~~~l~~~y~~~v~~t~G~HP~~~~~~~~~~~~~~~   96 (296)
T KOG3020          17 MLEDIYCHIQAHPSDSDASQVLERAVQAGVSKLIVTGTSLKDSKEALELAEKYPGSVYPTFGVHPHFSQEFSDQSRKEKF   96 (296)
T ss_pred             HHCHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHCCCHHHH
T ss_conf             22103212346887765037888887536337887178822079999998518985564467577743013103321547


Q ss_pred             HHHHHHHCCC---CCCCEECCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9885310013---3321004467755332-21110246789999876642044203300023335799985310003675
Q gi|254780215|r   76 VDELVCLASH---PRVVAIGETGLDRYHN-AHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFP  151 (262)
Q Consensus        76 ~~~l~~l~~~---~~~~aIGEiGLD~~~~-~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~  151 (262)
                      ++.|..++++   ++++|||||||||.|. ..+.+.|+.+|++|++||.+++||++||||.|++++++||++.......+
T Consensus        97 ~~~L~~~~~~~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~a~~d~~eIl~~~~~~~~~~  176 (296)
T KOG3020          97 LDTLLSIIENGFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRSAHEDLLEILKRFLPECHKK  176 (296)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99999888505668757750444455510169767899999999999987069804424655588999999843236775


Q ss_pred             CCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-----------------
Q ss_conf             331121464023443210352020233221133322333321056671798307866787776-----------------
Q gi|254780215|r  152 FVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSC-----------------  214 (262)
Q Consensus       152 ~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~-----------------  214 (262)
                      +++|||+|+.+.++++++.|+||||+|.+++.+  +..+++|.+|+||||+||||||+.|.+.                 
T Consensus       177 vvvHsFtGs~e~~~~~lk~~~yig~~g~~~k~~--e~~~vlr~iP~erlllETDsP~~~pk~~~~~~~~~~~~~~~~~~~  254 (296)
T KOG3020         177 VVVHSFTGSAEEAQKLLKLGLYIGFTGCSLKTE--ENLEVLRSIPLERLLLETDSPYCGPKPSSHAGPKYVKTLFSESYP  254 (296)
T ss_pred             EEEEECCCCHHHHHHHHHCCEEECCCCEEEECH--HHHHHHHHCCHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             599851698999999997058952464565226--568888618776703215885436775455662233224443213


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             88758824499999999987289989999999999999842
Q gi|254780215|r  215 QGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS  255 (262)
Q Consensus       215 r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~  255 (262)
                      ...+|+|+++..+++.+|++++++.+++++++++|+.|+|+
T Consensus       255 ~~~~neP~~~~~~~e~va~~k~~~~ee~~~~~~~Nt~rl~~  295 (296)
T KOG3020         255 LKGRNEPCNVLQVAEVVAEAKDLDLEEVAEATYENTIRLFK  295 (296)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf             43467746899999999986269999999999998998745


No 9  
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=100.00  E-value=5.9e-32  Score=233.35  Aligned_cols=234  Identities=27%  Similarity=0.384  Sum_probs=190.7

Q ss_pred             CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHH------H----HHHHHH----HHHHCCCCCCCCCCCCCC
Q ss_conf             91686138887565226899999999869989999167987------7----899999----998557233211244544
Q gi|254780215|r    1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVK------D----FVPLIK----LCQDYPSSIFCSVGTHPC   66 (262)
Q Consensus         1 M~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~------~----~~~~~~----l~~~~p~~i~~a~GiHP~   66 (262)
                      |+||+|.|++.+.|+ |    ++++..+||..++.++.+|.      .    |.+.+.    -++++.-.+++|+|+||-
T Consensus         1 ~~iD~HiH~d~r~~e-D----lekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr   75 (254)
T COG1099           1 MYIDSHIHLDVRGFE-D----LEKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPR   75 (254)
T ss_pred             CCCCCCCCCCCCCHH-H----HHHHHHHCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCEEEEEECCCCC
T ss_conf             930442122434477-9----99999838166642036887766688999999999722531688608304677333777


Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC-H----HHHHHHHHHH
Q ss_conf             3344678899885310013332100446775533221110246789999876642044203300-0----2333579998
Q gi|254780215|r   67 HAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS-R----SADDDMAAIL  141 (262)
Q Consensus        67 ~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~-r----~a~~~~l~iL  141 (262)
                      .+.+..+..+..|..++.+..++||||||||+-   +  +..+++|+.||+||++++.|++||+ |    .+...+++++
T Consensus        76 ~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~---t--~~E~evf~~QL~LA~e~dvPviVHTPr~nK~e~t~~ildi~  150 (254)
T COG1099          76 AIPPELEEVLEELEELLSNEDVVAIGEIGLEEA---T--DEEKEVFREQLELARELDVPVIVHTPRRNKKEATSKILDIL  150 (254)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC---C--HHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf             789059999999886516478367640332217---8--88999999999999874996799678776056789999999


Q ss_pred             HHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCH
Q ss_conf             53100036753311214640234432103520202332211333223333210566717983078667877768875882
Q gi|254780215|r  142 QEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEP  221 (262)
Q Consensus       142 ~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P  221 (262)
                      .+...++..-+|-|+   |.+++...++.|||.+++-.-..-...+..++++++.-+||++.||+-|.        ..+|
T Consensus       151 ~~~~l~~~lvvIDH~---N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ey~~~r~ilnSD~~s~--------~sd~  219 (254)
T COG1099         151 IESGLKPSLVVIDHV---NEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYGAERIILNSDAGSA--------ASDP  219 (254)
T ss_pred             HHCCCCHHHEEHHCC---CHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCC--------CCCC
T ss_conf             874998012101206---58779999725535778853776888999999998186629983665544--------3662


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             44999999999872899899999999999998425
Q gi|254780215|r  222 AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       222 ~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      ..+++|+-.+ +.+|++.+++.+..++|+++||+.
T Consensus       220 lavprtal~m-~~~gv~~~~i~kV~~~NA~~~~~l  253 (254)
T COG1099         220 LAVPRTALEM-EERGVGEEEIEKVVRENALSFYGL  253 (254)
T ss_pred             HHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf             0215999999-980577999999999989998576


No 10 
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=99.68  E-value=4.9e-15  Score=120.79  Aligned_cols=242  Identities=22%  Similarity=0.309  Sum_probs=167.6

Q ss_pred             EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC----------CCHHHHHHHH----HHH----HHCCCCCCCCCCC
Q ss_conf             168613888756522689999999986998999916----------7987789999----999----8557233211244
Q gi|254780215|r    2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA----------IKVKDFVPLI----KLC----QDYPSSIFCSVGT   63 (262)
Q Consensus         2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~----------~~~~~~~~~~----~l~----~~~p~~i~~a~Gi   63 (262)
                      ++|.|.|++-..  ....+++.+...+|-..++.+.          ++.+++.++.    .++    +.++...++.+|+
T Consensus         7 v~DnH~H~np~~--gg~~ea~~~F~rAGGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGv   84 (285)
T COG1831           7 VTDNHFHLNPKN--GGALEAARRFHRAGGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGV   84 (285)
T ss_pred             EECCEEEECCCC--CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             002504326776--747999999997489579986035200367888688999999999999999987547215788416


Q ss_pred             CCCCCCC---C--C--------HHHHHHHHHHCCCCCCCEECCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             5443344---6--7--------889988531001333210044677553322-111024678999987664204420330
Q gi|254780215|r   64 HPCHAHE---E--N--------EVLVDELVCLASHPRVVAIGETGLDRYHNA-HTIEEQKVVFLRHIEASRITGIPLVIH  129 (262)
Q Consensus        64 HP~~~~~---~--~--------~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~-~~~e~Q~~vF~~ql~lA~e~~~pv~iH  129 (262)
                      ||-.+..   .  .        ..-++...++..+.+++||||+|=..|... +-++.-.++++.-+++|++.+.||++|
T Consensus        85 HPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLH  164 (285)
T COG1831          85 HPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLH  164 (285)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             79999999984468678999999999999999850332331025888898999999999999999999853479837975


Q ss_pred             CHHHHHHHHHHHHHHHH---CCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             00233357999853100---036753311214640234432103520202332211333223333210566717983078
Q gi|254780215|r  130 SRSADDDMAAILQEEMK---KGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDS  206 (262)
Q Consensus       130 ~r~a~~~~l~iL~~~~~---~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDs  206 (262)
                      +-+...+.++-+.++.+   ..+.++|.|--++..   ..+-..|.+=|+..    .| +..++.++.  -.|.|+||| 
T Consensus       165 tes~~~~~~~~i~~~ak~~G~~~~~VVkHha~p~v---~~~~~~Gi~pSV~a----sr-~~v~~a~~~--g~~FmmETD-  233 (285)
T COG1831         165 TESLDEETYEEIAEMAKEAGIKPYRVVKHHAPPLV---LKCEEVGIFPSVPA----SR-KNVEDAAEL--GPRFMMETD-  233 (285)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC---HHHHHCCCCCCCCC----CH-HHHHHHHHC--CCCEEEECC-
T ss_conf             37788678999999999818996415761478320---02332276776656----56-889999853--875575402-


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             667877768875882449999999998728998999999999999984256
Q gi|254780215|r  207 PYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKI  257 (262)
Q Consensus       207 P~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~  257 (262)
                       |+-.-...|..-.|..+++-++.+.+--..+.|.+.++..+|-.++|+..
T Consensus       234 -yIDDp~RpgavL~PktVPrr~~~i~~~g~~~ee~vy~i~~E~pe~VYg~~  283 (285)
T COG1831         234 -YIDDPRRPGAVLGPKTVPRRTREILEKGDLTEEDVYRIHVENPERVYGIE  283 (285)
T ss_pred             -CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             -45786668874796204499999998558838899999876779873856


No 11 
>pfam04909 Amidohydro_2 Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.
Probab=99.17  E-value=7.9e-09  Score=79.48  Aligned_cols=233  Identities=16%  Similarity=0.154  Sum_probs=138.3

Q ss_pred             EEEECCCCCHH---------------HHCCHHHHHHHHHHCCCCEEEEECCCH-HHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             68613888756---------------522689999999986998999916798-77899999998557233211244544
Q gi|254780215|r    3 IDTHCHLLLPD---------------FDEDRHDVIMRAHQANVLKMIAIAIKV-KDFVPLIKLCQDYPSSIFCSVGTHPC   66 (262)
Q Consensus         3 iD~H~HL~~~~---------------~~~d~~~~i~~a~~~gv~~~i~~~~~~-~~~~~~~~l~~~~p~~i~~a~GiHP~   66 (262)
                      ||+|+|+-...               .....+.....+...|+...+.+.... .......+.+.++|+.+...+++-|.
T Consensus         1 ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   80 (270)
T pfam04909         1 IDAHAHLWDPGALDRLPLMDRRGYDPALASPADLLVLGAALGVARAVIVAASCRGANNRVLAEALKRPGRFVGGAALPPP   80 (270)
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHCHHHHHHHHHCCCCEEEEEEECCC
T ss_conf             92605643587656688787667788888999999998984983499954874030469899998479975999997389


Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH---------HHH-H
Q ss_conf             334467889988531001333210044677553322111024678999987664204420330002---------333-5
Q gi|254780215|r   67 HAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS---------ADD-D  136 (262)
Q Consensus        67 ~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~---------a~~-~  136 (262)
                      .    .+...+++.+.+.+..++||.-.. .  ....... -...+....+.|.++++||.+|+-.         ... .
T Consensus        81 ~----~~~a~~el~r~~~~~g~~Gv~l~~-~--~~~~~~~-~~~~~~~~~~~~~e~~~pv~iH~~~~~~~~~~~~~~~~~  152 (270)
T pfam04909        81 D----PEDAVAELERRLAELGFRGVRLNP-H--PGGGPLL-DPRLDRPIYEALAELGLPVDLHTGTGFAGEDTDASQPLL  152 (270)
T ss_pred             C----HHHHHHHHHHHCCCCCEEEEEECC-C--CCCCCCC-CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHH
T ss_conf             7----477999999974838806999768-5--7887776-668899999999986998999458887765646136999


Q ss_pred             HHHHHHHHHHCCCCCCCC-EECCCCH---HHHHHHHCC-CCEEECCCCCCH------HHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             799985310003675331-1214640---234432103-520202332211------33322333321056671798307
Q gi|254780215|r  137 MAAILQEEMKKGPFPFVI-HCFSSSQ---KLADICLEL-GGYISFTGMITF------PKYDALRAIARGIPMDRVLVETD  205 (262)
Q Consensus       137 ~l~iL~~~~~~~~~~~i~-H~FsG~~---~~~~~~l~~-g~y~S~~g~i~~------~~~~~~~e~v~~iPldriLlETD  205 (262)
                      +-.+++++   +..++|+ |+=.+..   +.+..+-+. +.|+-+++....      .....++.++..++.||||.-||
T Consensus       153 ~~~~~~~~---P~l~iv~~H~G~~~~~~~~~~~~~~~~~nv~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~drvmfGSD  229 (270)
T pfam04909       153 LEGLARRF---PDLKIVLDHAGGPWIGWREALALLARRPNVYVKLSGLYRDSPDPPAADPPALAELIEAFGPDRILFGSD  229 (270)
T ss_pred             HHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC
T ss_conf             99999978---998599978988856499999999869957985110323467862017999999999879992999579


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             866787776887588244999999999872899899999999999998425
Q gi|254780215|r  206 SPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       206 sP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      -|+.....       |.  . ....+....+++.++..++..+|+.|||+.
T Consensus       230 ~P~~~~~~-------~~--~-~~~~~~~~~~ls~~~~~~i~~~NA~rl~~l  270 (270)
T pfam04909       230 YPHPPLER-------PL--A-ALDLLDLLDALSEEEREKILGGNAARLYGL  270 (270)
T ss_pred             CCCCCCCC-------CH--H-HHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             99998656-------87--7-999998622999999999997889998582


No 12 
>PRK09875 putative hydrolase; Provisional
Probab=99.01  E-value=7.3e-08  Score=73.03  Aligned_cols=227  Identities=16%  Similarity=0.208  Sum_probs=144.9

Q ss_pred             HHHHHHCCCCEEEEECCCH--HHHHHHHHHHHHCCCCCCCCCCCCCC-----CCCCCCHHHHH-----HHHHHCCC--CC
Q ss_conf             9999986998999916798--77899999998557233211244544-----33446788998-----85310013--33
Q gi|254780215|r   22 IMRAHQANVLKMIAIAIKV--KDFVPLIKLCQDYPSSIFCSVGTHPC-----HAHEENEVLVD-----ELVCLASH--PR   87 (262)
Q Consensus        22 i~~a~~~gv~~~i~~~~~~--~~~~~~~~l~~~~p~~i~~a~GiHP~-----~~~~~~~~~~~-----~l~~l~~~--~~   87 (262)
                      +.+.++.|+..+|-+++--  .+-....+++++-.-+|..+-|+|..     ++.....+.+.     ++.+-+..  -+
T Consensus        40 l~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~IV~~TG~y~~~~~p~~~~~~s~e~la~~~i~ei~~Gi~gT~ik  119 (292)
T PRK09875         40 MNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELK  119 (292)
T ss_pred             HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999809997997788776859999999999729909981777877668877761799999999999998045677835


Q ss_pred             CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH-H-HHHHHHHHHHHHHHCCCCCCCC-EEC-CCCHHH
Q ss_conf             21004467755332211102467899998766420442033000-2-3335799985310003675331-121-464023
Q gi|254780215|r   88 VVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR-S-ADDDMAAILQEEMKKGPFPFVI-HCF-SSSQKL  163 (262)
Q Consensus        88 ~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r-~-a~~~~l~iL~~~~~~~~~~~i~-H~F-sG~~~~  163 (262)
                      .-.|||||-.+.. -++  ..+++|++--..+++.+.||.+|+- + ..-+.+++|++... .+.++++ |+- +.+.+.
T Consensus       120 aG~Igeig~~~~~-it~--~E~k~lrAaA~A~~~TG~pI~~Ht~~g~~g~e~l~il~e~Gv-d~~rVvigH~D~~~D~~~  195 (292)
T PRK09875        120 AGIIAEIGSSEGK-ITP--LEEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGV-DLSRVTVGHCDLKDNLDN  195 (292)
T ss_pred             CEEEEEEECCCCC-CCH--HHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCC-CHHHEEEECCCCCCCHHH
T ss_conf             2155554047898-898--999999999999998799768668888447999999998498-921578965789899899


Q ss_pred             HHHHHCCCCEEECCCC--CCH----HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHC
Q ss_conf             4432103520202332--211----3332233332105667179830786678777688758824499-99999998728
Q gi|254780215|r  164 ADICLELGGYISFTGM--ITF----PKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVV-NTAKALAKEKD  236 (262)
Q Consensus       164 ~~~~l~~g~y~S~~g~--i~~----~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~-~~~~~iA~i~~  236 (262)
                      ..++++.|+|++|-..  ..|    .+.+-+.++++.==.||||+=.|.-...+....|...- .+|. ..+-.+ +-+|
T Consensus       196 ~~~la~~G~~l~fD~~G~~~~~pd~~r~~~l~~L~~~G~~drIlLS~Di~~k~~l~~~GG~Gy-~~i~~~~iP~L-~~~G  273 (292)
T PRK09875        196 ILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGY-DYLLTTFIPQL-RQSG  273 (292)
T ss_pred             HHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCC-HHHHHHHHHHH-HHCC
T ss_conf             999996597897567873024975999999999996687552785041213667551599970-55898788999-9869


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q ss_conf             998999999999999984
Q gi|254780215|r  237 VSYEDLMEETTKNALKLF  254 (262)
Q Consensus       237 ~~~eei~~~~~~N~~~~f  254 (262)
                      ++.+++.+.+.+|=.|+|
T Consensus       274 vs~~~I~~ilv~NP~r~F  291 (292)
T PRK09875        274 FSQADVDVMLRENPSQFF  291 (292)
T ss_pred             CCHHHHHHHHHHCHHHHC
T ss_conf             999999999997869760


No 13 
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif.  The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=98.99  E-value=1.1e-07  Score=71.94  Aligned_cols=226  Identities=19%  Similarity=0.198  Sum_probs=146.8

Q ss_pred             HHHHHHCCCCEEEEECCC-H-HHHHHHHHHHHHCCCCCCCCCCCCCC-----CCCCCCHHHHHH-----HHHHCCCC--C
Q ss_conf             999998699899991679-8-77899999998557233211244544-----334467889988-----53100133--3
Q gi|254780215|r   22 IMRAHQANVLKMIAIAIK-V-KDFVPLIKLCQDYPSSIFCSVGTHPC-----HAHEENEVLVDE-----LVCLASHP--R   87 (262)
Q Consensus        22 i~~a~~~gv~~~i~~~~~-~-~~~~~~~~l~~~~p~~i~~a~GiHP~-----~~~~~~~~~~~~-----l~~l~~~~--~   87 (262)
                      +...++.|+..+|-++.- . .+-....+++++-.-+|..+-|+|.+     ++.....+.+..     +..-+...  +
T Consensus        38 l~~~k~~Gg~tiVD~T~~g~GRd~~~L~~is~~tgv~IV~~TG~y~~~~~p~~~~~~s~e~la~~~v~ei~~Gi~gT~ik  117 (293)
T cd00530          38 LKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATGFYKDAFYPEWVRLRSVEELTDMLIREIEEGIEGTGIK  117 (293)
T ss_pred             HHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999848987995478666769999999999639828967878877668978870689999999999998404688834


Q ss_pred             CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC-HH--HHHHHHHHHHHHHHCCCCCCCC-EECC-CCHH
Q ss_conf             2100446775533221110246789999876642044203300-02--3335799985310003675331-1214-6402
Q gi|254780215|r   88 VVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS-RS--ADDDMAAILQEEMKKGPFPFVI-HCFS-SSQK  162 (262)
Q Consensus        88 ~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~-r~--a~~~~l~iL~~~~~~~~~~~i~-H~Fs-G~~~  162 (262)
                      .-.|||+|-.  ..-++  ..+++|++--..+++.+.||.+|+ ++  +.-+.+++|.+.. -.+.++++ |+-. -+.+
T Consensus       118 aG~Ik~~~~~--~~it~--~E~k~lrAaA~A~~~TG~pI~~Ht~~g~~~~~e~~~il~~~G-~d~~rvvigH~D~~~D~~  192 (293)
T cd00530         118 AGIIKEAGGS--PAITP--LEEKVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEEEG-VDPSKVVIGHLDRNDDPD  192 (293)
T ss_pred             CCEEEECCCC--CCCCH--HHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHCC-CCHHHEEEECCCCCCCHH
T ss_conf             2068761468--99988--999999999999998798289827988653099999999859-892257896368989999


Q ss_pred             HHHHHHCCCCEEECCCC--CC-------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCHHHHH-HHHHHH
Q ss_conf             34432103520202332--21-------1333223333210566717983078667877-7688758824499-999999
Q gi|254780215|r  163 LADICLELGGYISFTGM--IT-------FPKYDALRAIARGIPMDRVLVETDSPYIVPV-SCQGKRNEPAYVV-NTAKAL  231 (262)
Q Consensus       163 ~~~~~l~~g~y~S~~g~--i~-------~~~~~~~~e~v~~iPldriLlETDsP~l~p~-~~r~~~n~P~~i~-~~~~~i  231 (262)
                      ...++++.|+|++|-..  ..       ..+.+.+.++++.==.||||+=+|.-+.... ++-|... ..+|. ..+-.+
T Consensus       193 ~~~~la~~G~~l~fD~~G~~~~~~~~~d~~r~~~l~~Li~~G~~d~illS~D~~~~~~~~~~~Gg~G-y~~i~~~~iP~L  271 (293)
T cd00530         193 YLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGGHG-YDYILTRFIPRL  271 (293)
T ss_pred             HHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHCCCCC-HHHHHHHHHHHH
T ss_conf             9999997698898777870135789998999999999997787573898544121555654079998-788999899999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             98728998999999999999984
Q gi|254780215|r  232 AKEKDVSYEDLMEETTKNALKLF  254 (262)
Q Consensus       232 A~i~~~~~eei~~~~~~N~~~~f  254 (262)
                       +-+|++.+.+.+.+..|-.|+|
T Consensus       272 -~~~Gv~~~~i~~ilv~NP~r~L  293 (293)
T cd00530         272 -RERGVTEEQLDTILVENPARFL  293 (293)
T ss_pred             -HHCCCCHHHHHHHHHHCHHHHC
T ss_conf             -9869999999999986979659


No 14 
>pfam02126 PTE Phosphotriesterase family.
Probab=98.99  E-value=1.6e-07  Score=70.76  Aligned_cols=229  Identities=18%  Similarity=0.197  Sum_probs=145.8

Q ss_pred             HHHHHHCCCCEEEEECCCH--HHHHHHHHHHHHCCCCCCCCCCCCC-----CCCCCCCHHHHH-----HHHHHCCCC--C
Q ss_conf             9999986998999916798--7789999999855723321124454-----433446788998-----853100133--3
Q gi|254780215|r   22 IMRAHQANVLKMIAIAIKV--KDFVPLIKLCQDYPSSIFCSVGTHP-----CHAHEENEVLVD-----ELVCLASHP--R   87 (262)
Q Consensus        22 i~~a~~~gv~~~i~~~~~~--~~~~~~~~l~~~~p~~i~~a~GiHP-----~~~~~~~~~~~~-----~l~~l~~~~--~   87 (262)
                      +.+.++.|+..+|-++.--  .+-....+++++-.-+|..+-|+|-     .++.....+.+.     ++..-+...  +
T Consensus        44 l~~fk~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~IV~~TG~y~~~~~p~~~~~~s~e~la~~~i~ei~~Gi~~T~ik  123 (308)
T pfam02126        44 LLYLKARGVRTIVENTTTGLGRDVHTLAWVARATGVHIVAATGLYVDADHPLATRLRSVEELTDVFVREIEHGIDGTGIK  123 (308)
T ss_pred             HHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999828987995689776869999999999639839974766678769876662699999999999998436688745


Q ss_pred             CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH---HHHHHHHHHHHHHHCCCCCCCC-EECC-CCHH
Q ss_conf             210044677553322111024678999987664204420330002---3335799985310003675331-1214-6402
Q gi|254780215|r   88 VVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS---ADDDMAAILQEEMKKGPFPFVI-HCFS-SSQK  162 (262)
Q Consensus        88 ~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~---a~~~~l~iL~~~~~~~~~~~i~-H~Fs-G~~~  162 (262)
                      .--|||+|-.  +..++.  .+++|++--...++.+.||++|+-.   +-.+.+++|++.. -.+.++++ |+-. -+.+
T Consensus       124 aG~Ik~~~~~--~~it~~--E~k~lrAaA~A~~~TG~pI~~H~~~~~~~~~e~l~il~e~G-vd~~rvvigH~D~~~D~~  198 (308)
T pfam02126       124 AGIIGEIGTS--WKLTPS--EEKVLEAAAHAHAQTGCPVSTHTGASPRAGLQQIRILQEEG-VDLSRVVIGHCDDIDDLK  198 (308)
T ss_pred             CEEEEEECCC--CCCCHH--HHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHCC-CCHHHEEEECCCCCCCHH
T ss_conf             2078883058--999878--99999999999997699379707987555199999999859-894467885268889989


Q ss_pred             HHHHHHCCCCEEECCCC------------CCH----HHHHHHHHHHHCCCCCCEEEEECCCCC-CCCCCCCCCCCHHHHH
Q ss_conf             34432103520202332------------211----333223333210566717983078667-8777688758824499
Q gi|254780215|r  163 LADICLELGGYISFTGM------------ITF----PKYDALRAIARGIPMDRVLVETDSPYI-VPVSCQGKRNEPAYVV  225 (262)
Q Consensus       163 ~~~~~l~~g~y~S~~g~------------i~~----~~~~~~~e~v~~iPldriLlETDsP~l-~p~~~r~~~n~P~~i~  225 (262)
                      ..+++++.|+|++|-..            +-+    .+.+.+.++++.==.||||+=.|.-.. .-.++.|...-+.+|.
T Consensus       199 y~~~la~~G~~l~fD~~G~~~~~~~~~~~~~~~~d~~r~~~i~~Li~~Gy~drIlLS~D~~~k~~~~~~gg~g~g~~~i~  278 (308)
T pfam02126       199 YLLELAALGCYLGYDLFGTELLGYQLSPDIDIPPDQKRIRRVHALVDRGYEDRILLSHDITTKFRSMKYGGHGYSPDLIL  278 (308)
T ss_pred             HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEECCCCCCCHHHHH
T ss_conf             99999974978985356621233444555689998999999999997798574897256454002101389886468899


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999999987289989999999999999842
Q gi|254780215|r  226 NTAKALAKEKDVSYEDLMEETTKNALKLFS  255 (262)
Q Consensus       226 ~~~~~iA~i~~~~~eei~~~~~~N~~~~f~  255 (262)
                      ..+--.-+-+|++.+++.+.+..|-.|+|.
T Consensus       279 ~~~iP~L~~~Gv~~~~i~~ilv~NP~r~lt  308 (308)
T pfam02126       279 TNVIPKLRQRGVTQEVLDKILVENPKQFLT  308 (308)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCHHHHCC
T ss_conf             988899998699999999999878697629


No 15 
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase  dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=98.95  E-value=1.4e-07  Score=71.08  Aligned_cols=234  Identities=19%  Similarity=0.181  Sum_probs=133.7

Q ss_pred             EEEEECCCCCHHHH--------------------CCHHHHHHHHHHCCCCEEEEECCCHH------HHHHHHHHHHHCCC
Q ss_conf             16861388875652--------------------26899999999869989999167987------78999999985572
Q gi|254780215|r    2 LIDTHCHLLLPDFD--------------------EDRHDVIMRAHQANVLKMIAIAIKVK------DFVPLIKLCQDYPS   55 (262)
Q Consensus         2 ~iD~H~HL~~~~~~--------------------~d~~~~i~~a~~~gv~~~i~~~~~~~------~~~~~~~l~~~~p~   55 (262)
                      |||+|+|+....+.                    ......+.++.++||+.++..+....      ......+.+.....
T Consensus         1 fID~H~H~~~~~~~~~~~~~~~~~~~~~t~e~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (275)
T cd01292           1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG   80 (275)
T ss_pred             CEECCCCHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             96067447888786074158705450599999999999999999976962998651358846669999999999725558


Q ss_pred             -CCCCCCCCCCCCCCCC---CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
Q ss_conf             -3321124454433446---788998853100133321004467755332211102467899998766420442033000
Q gi|254780215|r   56 -SIFCSVGTHPCHAHEE---NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR  131 (262)
Q Consensus        56 -~i~~a~GiHP~~~~~~---~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r  131 (262)
                       .+..+.+.........   .+...+.+..... ....+++-.+..     .......+.+.+.+++|++++.|+.+|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~e~~~~~~~~a~~~~~~i~~H~~  154 (275)
T cd01292          81 IRVVLGLGIPGVPAAVDEDAEALLLELLRRGLE-LGAVGLKLAGPY-----TATGLSDESLRRVLEEARKLGLPVVIHAG  154 (275)
T ss_pred             EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEECCC-----CCCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             689801686777733321047999999997256-567469886687-----78899999999999999976993899736


Q ss_pred             HHHHH--HHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH------HHHHHHHHHCCCCCCEEEE
Q ss_conf             23335--799985310003675331121464023443210352020233221133------3223333210566717983
Q gi|254780215|r  132 SADDD--MAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPK------YDALRAIARGIPMDRVLVE  203 (262)
Q Consensus       132 ~a~~~--~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~------~~~~~e~v~~iPldriLlE  203 (262)
                      ....+  .++-+.+....++.-++.||-.-+.+.++.+.+.|..++++|.....-      ...++++++.  --++-|-
T Consensus       155 e~~~~~~~~~~l~~~~~l~~~~~~~H~~~~~~~~~~~l~~~g~~v~~~P~sn~~l~~~~~~~~~~~~~~~~--G~~v~Lg  232 (275)
T cd01292         155 ELPDPTRALEDLVALLRLGGRVVIGHVSHLDPELLELLKEAGVSLEVCPLSNYLLGRDGEGAEALRRLLEL--GIRVTLG  232 (275)
T ss_pred             CCCCCCHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHCCCEEEECCHHHHHHCCCCCCCCCHHHHHHC--CCEEEEE
T ss_conf             87544359999997488899858887540799999999985995998815677744476798778999968--7979983


Q ss_pred             ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH
Q ss_conf             078667877768875882449999999998728--9989999999999999
Q gi|254780215|r  204 TDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKD--VSYEDLMEETTKNALK  252 (262)
Q Consensus       204 TDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~--~~~eei~~~~~~N~~~  252 (262)
                      ||+|...         .+.++....+..+....  ++.+++.+..+.|.-|
T Consensus       233 tD~~~~~---------~~~~~~~~m~~~~~~~~~~~~~~~~l~~aT~n~Ar  274 (275)
T cd01292         233 TDGPPHP---------LGTDLLALLRLLLKVLRLGLSLEEALRLATINPAR  274 (275)
T ss_pred             CCCCCCC---------CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf             8999889---------98389999999999756489999999998387427


No 16 
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=98.74  E-value=2.8e-06  Score=62.51  Aligned_cols=234  Identities=20%  Similarity=0.214  Sum_probs=133.6

Q ss_pred             EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCC--C
Q ss_conf             168613888756522689999999986998999916------798778999999985572332112-4454433446--7
Q gi|254780215|r    2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYPSSIFCSV-GTHPCHAHEE--N   72 (262)
Q Consensus         2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p~~i~~a~-GiHP~~~~~~--~   72 (262)
                      |||+|+|+...  .....+..+.+...|++.++.-.      .........++-+++.|..++..+ ..-|....+.  .
T Consensus        11 fID~HvHiess--~~tP~~~a~~~l~~GtTTvv~Dpheianv~G~~gi~~~l~~~~~~p~~~~~~~ps~vPa~~~e~~Ga   88 (422)
T cd01295          11 FIDAHLHIESS--MLTPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWMLPSCVPATPFETSGA   88 (422)
T ss_pred             EEECCCCCCCC--CCCHHHHHHHHHHCCCEEEECCCHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             74312788666--5499999999985682799478789987378999999999861288618997777777588777888


Q ss_pred             HHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             88998853100133321004467755332211102467899998766420442033000233357999853100036753
Q gi|254780215|r   73 EVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPF  152 (262)
Q Consensus        73 ~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~  152 (262)
                      ....+.+.++...+++.+.||+- ||-.   ......+++ +-++.|.+.++|+.-|+.++.++.+.   .+...+..  
T Consensus        89 ~~~~~~~~~~~~~~~v~glgEvm-~~~~---v~~~d~~~~-~~i~~a~~~g~~v~GHapg~~g~~l~---~~i~aGi~--  158 (422)
T cd01295          89 ELTAEDIKELLEHPEVVGLGEVM-DFPG---VIEGDDEML-AKIQAAKKAGKPVDGHAPGLSGEELN---AYMAAGIS--  158 (422)
T ss_pred             CCCHHHHHHHHHCCCCCCHHHHC-CCCC---CCCCCHHHH-HHHHHHHHCCCEEEEECCCCCHHHHH---HHHHCCCC--
T ss_conf             27999999986184424233313-6511---246878999-99999996798899978999979999---99975998--


Q ss_pred             CCE-ECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             311-2146402344321035202023322113332233332105667179830786678777688758824499999999
Q gi|254780215|r  153 VIH-CFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKAL  231 (262)
Q Consensus       153 i~H-~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~i  231 (262)
                      .-| |+  +.+.+.+.++.|.|+.+-.....++-..+...+...-.+|+.+=||+.....--..|      .+...++..
T Consensus       159 ~dHe~~--~~ee~~e~l~~Gm~v~ir~gs~~~nl~~l~~~i~~~~~~~~~l~TDd~~p~~l~~~G------~ld~~vr~A  230 (422)
T cd01295         159 TDHEAM--TGEEALEKLRLGMYVMLREGSIAKNLEALLPAITEKNFRRFMFCTDDVHPDDLLSEG------HLDYIVRRA  230 (422)
T ss_pred             CCCCCC--CHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCC------CHHHHHHHH
T ss_conf             675648--799999998688589997785523799999876652558459992899832355369------799999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9872899899999999999998425
Q gi|254780215|r  232 AKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       232 A~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      -+ .|+++++..+..+-|.-+.||.
T Consensus       231 v~-~Gl~p~~Ai~maT~NpA~~~gl  254 (422)
T cd01295         231 IE-AGIPPEDAIQMATINPAECYGL  254 (422)
T ss_pred             HH-CCCCHHHHHHHHHHHHHHHCCC
T ss_conf             98-5999999999987519998599


No 17 
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=98.58  E-value=3.2e-06  Score=62.14  Aligned_cols=208  Identities=17%  Similarity=0.175  Sum_probs=124.1

Q ss_pred             HHHHHHCCCCEEEEEC----CCHHH------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf             9999986998999916----79877------8999999985572332112445443344678899885310013332100
Q gi|254780215|r   22 IMRAHQANVLKMIAIA----IKVKD------FVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAI   91 (262)
Q Consensus        22 i~~a~~~gv~~~i~~~----~~~~~------~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aI   91 (262)
                      +.-+...++...+..+    ....+      .+...+.+++||+.......+-|..-    +...+++++...+..++++
T Consensus        55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~----~~a~~E~er~v~~~gf~g~  130 (293)
T COG2159          55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDP----EAAAEELERRVRELGFVGV  130 (293)
T ss_pred             HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCH----HHHHHHHHHHHHHCCCEEE
T ss_conf             767520023157640554322225565431269999998758964678776588976----6699999999986385048


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHH------------HHHHHHHHHHHCCCCCCCC-EECC
Q ss_conf             44677553322111024678999987664204420330002333------------5799985310003675331-1214
Q gi|254780215|r   92 GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADD------------DMAAILQEEMKKGPFPFVI-HCFS  158 (262)
Q Consensus        92 GEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~------------~~l~iL~~~~~~~~~~~i~-H~Fs  158 (262)
                      .--+..-  ...+ ..  ..+....+.|.++++||+||+=....            .+-++++++   +..++|+ |+ +
T Consensus       131 ~l~p~~~--~~~~-~~--~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~f---P~l~IVl~H~-G  201 (293)
T COG2159         131 KLHPVAQ--GFYP-DD--PRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKF---PELKIVLGHM-G  201 (293)
T ss_pred             EECCCCC--CCCC-CC--HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHC---CCCCEEEEEC-C
T ss_conf             9655534--6788-74--57899999999769988997289976666454667868999999868---9988899925-8


Q ss_pred             CCHHHHHHHH-----CCCCEEECCCCCCHHHH-HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             6402344321-----03520202332211333-22333321056671798307866787776887588244999999999
Q gi|254780215|r  159 SSQKLADICL-----ELGGYISFTGMITFPKY-DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALA  232 (262)
Q Consensus       159 G~~~~~~~~l-----~~g~y~S~~g~i~~~~~-~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA  232 (262)
                      .+..+....+     ..+.|+-.++...+.-. ..++.+.. .+.||||-=||.|+-.|.             .-...+ 
T Consensus       202 ~~~p~~~~a~~~a~~~~nvy~d~s~~~~~~~~~~~~~~~~~-~~~dkilFGSD~P~~~~~-------------~~l~~~-  266 (293)
T COG2159         202 EDYPWELEAIELAYAHPNVYLDTSGVRPKYFAPPLLEFLKE-LGPDKILFGSDYPAIHPE-------------VWLAEL-  266 (293)
T ss_pred             CCCCCHHHHHHHHHHCCCHHEEECCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCCCCHH-------------HHHHHH-
T ss_conf             87753889999887576520011023665573899999986-067708964798886767-------------779999-


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             8728998999999999999984256
Q gi|254780215|r  233 KEKDVSYEDLMEETTKNALKLFSKI  257 (262)
Q Consensus       233 ~i~~~~~eei~~~~~~N~~~~f~~~  257 (262)
                      ...+++.+...+.++.|+.|+|+..
T Consensus       267 ~~l~l~~e~k~kiL~~NA~rll~l~  291 (293)
T COG2159         267 DELGLSEEVKEKILGENAARLLGLD  291 (293)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             8648999999999987099996868


No 18 
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=98.53  E-value=5.7e-06  Score=60.42  Aligned_cols=231  Identities=18%  Similarity=0.271  Sum_probs=111.8

Q ss_pred             EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEECCC-HHHHHHHHHHHHHCCCCCCCC-----CCCCCCC-CCCCC
Q ss_conf             16861388875--652268999999998699899991679-877899999998557233211-----2445443-34467
Q gi|254780215|r    2 LIDTHCHLLLP--DFDEDRHDVIMRAHQANVLKMIAIAIK-VKDFVPLIKLCQDYPSSIFCS-----VGTHPCH-AHEEN   72 (262)
Q Consensus         2 ~iD~H~HL~~~--~~~~d~~~~i~~a~~~gv~~~i~~~~~-~~~~~~~~~l~~~~p~~i~~a-----~GiHP~~-~~~~~   72 (262)
                      |||.|+|+...  .+..+.+.   -+...||+.++..|+. ..++....+.+++....+|..     +|+-... ..+..
T Consensus        52 lID~H~H~~~~~~~~~~~~d~---~~~~~GvTTvvdaG~~G~~~~~~~~~~~~~~~t~v~a~lni~~~G~~~~~el~d~~  128 (365)
T TIGR03583        52 WIDDHTHCFPKSALYYDEPDE---IGVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLNISRIGLVAQDELADLS  128 (365)
T ss_pred             EEEEEECCCCCCCCCCCCCCH---HHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECHHHCCCCCCCHHCCCH
T ss_conf             437403577898765547422---11125745598579888657999999865235206888500111564552005601


Q ss_pred             HHHHHHHHH-HCCCCC-CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCEEECHHH---HHHHHHHHHHHHH
Q ss_conf             889988531-001333-2100446775533221110246789999876642-044203300023---3357999853100
Q gi|254780215|r   73 EVLVDELVC-LASHPR-VVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRI-TGIPLVIHSRSA---DDDMAAILQEEMK  146 (262)
Q Consensus        73 ~~~~~~l~~-l~~~~~-~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e-~~~pv~iH~r~a---~~~~l~iL~~~~~  146 (262)
                      .-..+.... ....+. ++++. .-+......   +.-.+-++.-.+++.+ .++|+++|.-..   .+++++.|+    
T Consensus       129 ~~~~~~~~~~~~~~~d~ivGiK-~r~s~~~~~---~~g~~~l~~a~~~~~~~~~lPl~vHig~~p~~~~e~~~~l~----  200 (365)
T TIGR03583       129 NLDASAVKQAVERYPDFIVGLK-ARMSKSVVG---DNGIEPLEIAKQIQQENLELPLMVHIGSAPPELDEILALME----  200 (365)
T ss_pred             HCCHHHHHHHHHHCCCCEEEEE-EECCCCCCC---CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHH----
T ss_conf             1798999999986757559999-810355125---57776899999999861799759983899825899998742----


Q ss_pred             CCCCCCCCEECCCCHH-----------HHHHHHCCCCEEECC---CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf             0367533112146402-----------344321035202023---32211333223333210566717983078667877
Q gi|254780215|r  147 KGPFPFVIHCFSSSQK-----------LADICLELGGYISFT---GMITFPKYDALRAIARGIPMDRVLVETDSPYIVPV  212 (262)
Q Consensus       147 ~~~~~~i~H~FsG~~~-----------~~~~~l~~g~y~S~~---g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~  212 (262)
                      .+  -++-|||+|...           .+....+.|..|-++   +..+|..+.+  ..-+.++.+-  +.||-      
T Consensus       201 ~G--Di~tH~~~~~~~~il~~~g~v~~~v~~A~~rGv~~dvghg~~sfsf~~a~~--a~~~g~~pdt--istD~------  268 (365)
T TIGR03583       201 KG--DVLTHCFNGKPNGILRETGEVKPSVLEAYNRGVILDVGHGTASFSFHVAEK--AKRAGIFPDT--ISTDI------  268 (365)
T ss_pred             CC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHH--HHHCCCCCCC--CCCCC------
T ss_conf             38--816776647998525778641389999986885999835876557889998--8636988874--06653------


Q ss_pred             CCCCCCCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             768875882-44999999999872899899999999999998425
Q gi|254780215|r  213 SCQGKRNEP-AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       213 ~~r~~~n~P-~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      ..+++.|-| ..+..+..++-. .|+|++++.+.++.|.-++|+.
T Consensus       269 ~~~~~~~gp~~~l~~~msk~l~-~G~sL~~vI~~~T~nPAk~l~L  312 (365)
T TIGR03583       269 YIRNRINGPVYSLATVMSKFLA-LGYSLEEVIEKVTKNAAEILKL  312 (365)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCC
T ss_conf             3356668761205899999997-4999999999998899998498


No 19 
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=98.53  E-value=4.6e-06  Score=61.04  Aligned_cols=233  Identities=15%  Similarity=0.138  Sum_probs=115.6

Q ss_pred             EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEECCC-HHHHHHHHH-HHHHCCCCCCCC-----CCCCCCCCCCCC
Q ss_conf             168613888756--52268999999998699899991679-877899999-998557233211-----244544334467
Q gi|254780215|r    2 LIDTHCHLLLPD--FDEDRHDVIMRAHQANVLKMIAIAIK-VKDFVPLIK-LCQDYPSSIFCS-----VGTHPCHAHEEN   72 (262)
Q Consensus         2 ~iD~H~HL~~~~--~~~d~~~~i~~a~~~gv~~~i~~~~~-~~~~~~~~~-l~~~~p~~i~~a-----~GiHP~~~~~~~   72 (262)
                      |||.|+|+-...  +.-+.+.   -+...||+.++..|+. ..++....+ ....-.-.++..     .|+-- ......
T Consensus        59 lID~H~H~~~~~~~~g~~pD~---~~~~~GVTTvVDaGsaG~~n~~~f~~~vi~~sktrv~aflni~~~G~~~-~~e~~d  134 (387)
T PRK12394         59 LIDYHAHVFYDATEGGVRPDM---YMPPNGVTTVVDAGSAGTANFDAFYRTVICASKVRIKAFLTVSPPGQTW-SQENYD  134 (387)
T ss_pred             EEEEEECCCCCCCCCCCCCCC---CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEHHHHHHHHHCCCC-CHHHCC
T ss_conf             478734014688657638111---0146785658726998751368888752221032212134546530446-633369


Q ss_pred             HHHH--HHHHHHC-CCCC-CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCC
Q ss_conf             8899--8853100-1333-2100446775533221110246789999876642044203300023335799985310003
Q gi|254780215|r   73 EVLV--DELVCLA-SHPR-VVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKG  148 (262)
Q Consensus        73 ~~~~--~~l~~l~-~~~~-~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~  148 (262)
                      ...+  +.....+ +++. +++|- +..   ......+.-.+.+++-.++|++.++|+++|.-+.--.+-+++... +.+
T Consensus       135 ~~~id~~~~~~~~~~~~d~ivGiK-~r~---~~~~v~~~g~~pl~~a~e~a~~~~lplmvH~~~~~~~~~ei~~~l-r~G  209 (387)
T PRK12394        135 PDNIDENKIHALFRQYRNVLQGLK-LKV---QTEDIAEYGLKPLTESLRIANDLRCPVAIHSTHPVVPMKELVSLL-RRG  209 (387)
T ss_pred             HHHCCHHHHHHHHHHCHHHEEEEE-EEE---ECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH-CCC
T ss_conf             655789999999986724235569-998---715534357069999999986559818997889998999999874-569


Q ss_pred             CCCCCCEECCCCHHH-----------HHHHHCCCCEEECC-C--CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
Q ss_conf             675331121464023-----------44321035202023-3--221133322333321056671798307866787776
Q gi|254780215|r  149 PFPFVIHCFSSSQKL-----------ADICLELGGYISFT-G--MITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSC  214 (262)
Q Consensus       149 ~~~~i~H~FsG~~~~-----------~~~~l~~g~y~S~~-g--~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~  214 (262)
                        -++-|||.|....           +++..++|..|-++ |  ...|+.+.  +.+..-...  -.+.||-+      .
T Consensus       210 --DI~tH~f~~~~~~i~~~~g~v~~~v~~A~~rGv~fDvghG~~sFsf~~a~--~al~~G~~P--dtISTDl~------~  277 (387)
T PRK12394        210 --DIIAHAFHGKGSTILTDEGAVLAEVRQARERGVIFDAANGRSHFSMNTAR--RAIANGFLP--DIISSDLS------T  277 (387)
T ss_pred             --CEEEEECCCCCCCEECCCCCCHHHHHHHHCCCEEEEECCCCCCCCHHHHH--HHHHCCCCC--CEEECCCC------C
T ss_conf             --88986215888864688874829999875087689935888854689999--999726886--52404652------0


Q ss_pred             CCCCCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             8875882-44999999999872899899999999999998425
Q gi|254780215|r  215 QGKRNEP-AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       215 r~~~n~P-~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      +.+.|.| ..++.+..+.= ..|+|++++.+.++.|.-++++.
T Consensus       278 ~~~~~~pv~~l~~~msk~l-~lG~~L~evI~~~T~nPA~~lgl  319 (387)
T PRK12394        278 ITKLAWPVYALPWILSKYL-ALGVALTDVINACTHTPAVLMGM  319 (387)
T ss_pred             CCCCCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             1015773667788999998-70899999999986889998098


No 20 
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=98.51  E-value=2.1e-05  Score=56.71  Aligned_cols=231  Identities=16%  Similarity=0.162  Sum_probs=137.5

Q ss_pred             CEEEEECCCCCHH--------------HHCCHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHHHCCCCCCCC-CCC
Q ss_conf             9168613888756--------------52268999999998699899991--679877899999998557233211-244
Q gi|254780215|r    1 MLIDTHCHLLLPD--------------FDEDRHDVIMRAHQANVLKMIAI--AIKVKDFVPLIKLCQDYPSSIFCS-VGT   63 (262)
Q Consensus         1 M~iD~H~HL~~~~--------------~~~d~~~~i~~a~~~gv~~~i~~--~~~~~~~~~~~~l~~~~p~~i~~a-~Gi   63 (262)
                      |+||||.|+-+..              .+-..++....+...||.+.|.+  +.++.|.+.-++..++.++ ...+ +|+
T Consensus         8 ~~IDtH~Hl~~~~~~~~pw~~~~~~~~~d~~~~dY~~~~~~~gv~~~V~vq~~~~~~D~~~e~~~v~~~~~-~~g~~vg~   86 (279)
T COG3618           8 MIIDTHAHLWDPGALPYPWLADYEALRRDYLFEDYLALLKAHGVSGGVLVQVNVDPRDNEKELAFVAELAE-RHGGIVGV   86 (279)
T ss_pred             CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHH-HHCCEEEE
T ss_conf             54021346535665578887766666789898999999875486406999436676655999999996477-51865999


Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH-HHHHHHHHH
Q ss_conf             5443344678899885310013332100446775533221110246789999876642044203300023-335799985
Q gi|254780215|r   64 HPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA-DDDMAAILQ  142 (262)
Q Consensus        64 HP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a-~~~~l~iL~  142 (262)
                          +....++..++|.... ++.+++|=  .....-.....+  -..|++-++-...+++++-++.-.. -.+.+..++
T Consensus        87 ----id~~~~e~~a~L~~~~-~~~~~GvR--~~l~~~p~~~~~--a~~~r~~~~rL~~~gl~fdl~~~~~ql~~~i~l~~  157 (279)
T COG3618          87 ----IDECRPEFAAKLERAR-YPFFRGVR--RNLHVVPDGLFE--APAWRANVERLAKLGLHFDLQVDPHQLPDLIPLAL  157 (279)
T ss_pred             ----EECCCCHHHHHHHHHC-CCCCCEEE--EHHHCCCCCCHH--HHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHH
T ss_conf             ----8357804899999843-65421000--022037752101--38999999999756970899857645377887785


Q ss_pred             HHHHCCCCCCCC-EECCCCH------------HHHHHHHCCCCEEECCCCCCHHHH--------HHHHHHHHCCCCCCEE
Q ss_conf             310003675331-1214640------------234432103520202332211333--------2233332105667179
Q gi|254780215|r  143 EEMKKGPFPFVI-HCFSSSQ------------KLADICLELGGYISFTGMITFPKY--------DALRAIARGIPMDRVL  201 (262)
Q Consensus       143 ~~~~~~~~~~i~-H~FsG~~------------~~~~~~l~~g~y~S~~g~i~~~~~--------~~~~e~v~~iPldriL  201 (262)
                      +   .+.+++|+ ||  |..            .+++-.-.-++|+-+||..+|...        .-.+.++...|.||++
T Consensus       158 ~---~Pd~~~VldH~--G~p~~~~~~~~~w~~~m~~la~~pNv~~KlSG~~~~~~~~w~~~~v~p~~e~~i~~fg~dR~v  232 (279)
T COG3618         158 K---APDVNFVLDHC--GRPDIKINLEDPWKAALARLARRPNVWAKLSGVYAYSDESWTVEDVRPYVEELIELFGWDRFV  232 (279)
T ss_pred             H---CCCCCEEECCC--CCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf             3---89998885168--888766566678999999998488769998640013667777888999999999866944267


Q ss_pred             EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             830786678777688758824499999999987289989999999999999842
Q gi|254780215|r  202 VETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS  255 (262)
Q Consensus       202 lETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~  255 (262)
                      -=||-|-..-.+         +....+....++.--|..+-.++...|++|+|+
T Consensus       233 fGSdwPv~~l~~---------~~~~~~~~~~~~v~~~~~er~~i~~~NA~rly~  277 (279)
T COG3618         233 FGSDWPVTSLES---------DFASWVAATRELVPGDAAERARILVDNARRLYR  277 (279)
T ss_pred             ECCCCCCCCCCC---------CHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHC
T ss_conf             507997121357---------769999999987389888999997558998847


No 21 
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=98.41  E-value=7.9e-05  Score=52.85  Aligned_cols=240  Identities=16%  Similarity=0.159  Sum_probs=115.2

Q ss_pred             EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEEC-CC-----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             1686138887565--22689999999986998999916-79-----8778999999985572332112445443344678
Q gi|254780215|r    2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAIA-IK-----VKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE   73 (262)
Q Consensus         2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~~-~~-----~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~   73 (262)
                      +||.|+|+..+.+  .++++.--..|...||..++... ++     +.......+.++.. ..+  .+..++........
T Consensus        16 ~ID~H~H~~~pg~~~~e~~~t~t~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~   92 (374)
T cd01317          16 LVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDV-GIV--RVLPIGALTKGLKG   92 (374)
T ss_pred             EEECCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCC-CCC--CEEEEEEEECCCCH
T ss_conf             685450359999765144999999998399589997889999989799999999970345-883--04789984548633


Q ss_pred             HHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-------------------
Q ss_conf             8998853100133321004467755332211102467899998766420442033000233-------------------
Q gi|254780215|r   74 VLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD-------------------  134 (262)
Q Consensus        74 ~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~-------------------  134 (262)
                      +.+..+..+... .++++..-+    ....+    ...+.+.++.|+.++.|+.+||.+..                   
T Consensus        93 ~~l~~~~~l~~~-G~~~~~~~~----~~~~~----~~~l~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~~~~~~~~~~~  163 (374)
T cd01317          93 EELTEIGELLEA-GAVGFSDDG----KPIQD----AELLRRALEYAAMLDLPIIVHPEDPSLAGGGVMNEGKVASRLGLP  163 (374)
T ss_pred             HHHHHHHHHHHC-CCEEEECCC----CCCCC----HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCHHHCCCC
T ss_conf             255657889860-854673499----63457----999999999887549859993798678654665058631520899


Q ss_pred             -----HHH---HHHHHHHHHCCCCCC-CCEECC-CCHHHHHHHHCCCCEEE---------CC--------------CCCC
Q ss_conf             -----357---999853100036753-311214-64023443210352020---------23--------------3221
Q gi|254780215|r  135 -----DDM---AAILQEEMKKGPFPF-VIHCFS-SSQKLADICLELGGYIS---------FT--------------GMIT  181 (262)
Q Consensus       135 -----~~~---l~iL~~~~~~~~~~~-i~H~Fs-G~~~~~~~~l~~g~y~S---------~~--------------g~i~  181 (262)
                           .|.   -+++ +.......++ +.|.=+ ++.+.++++.+.|.-++         ++              |.+-
T Consensus       164 ~~p~~~E~~ai~~~~-~la~~~g~~vhi~Hiss~~~l~li~~ar~~G~~vt~e~~p~~L~~~~~~~~~~~~~~k~~PPlr  242 (374)
T cd01317         164 GIPPEAETIMVARDL-ELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALESYDTNAKVNPPLR  242 (374)
T ss_pred             CCCHHHHHHHHHHHH-HHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHHCCCCCCCCCCCCC
T ss_conf             999999999999999-9999729848973435588999999998748977999725653588878606676524689878


Q ss_pred             HH-HHHHHHHHHHCCCCCCEEEEEC-CCCCCCCC---C----CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             13-3322333321056671798307-86678777---6----88758824499999999987289989999999999999
Q gi|254780215|r  182 FP-KYDALRAIARGIPMDRVLVETD-SPYIVPVS---C----QGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALK  252 (262)
Q Consensus       182 ~~-~~~~~~e~v~~iPldriLlETD-sP~l~p~~---~----r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~  252 (262)
                      -+ ..+.+.+.++.=-.|  .+=|| +|+.....   +    -|-..--.+++.....+-+-+.++++++.+.+..|--|
T Consensus       243 ~~~d~~~L~~~l~~g~id--~i~sDH~p~~~~~k~~~~~~a~~G~~g~e~~lp~l~~~~v~~~~lsle~~v~~~s~nPAk  320 (374)
T cd01317         243 SEEDREALIEALKDGTID--AIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLVKGGLLTLPDLIRALSTNPAK  320 (374)
T ss_pred             CHHHHHHHHHHHHCCCCE--EEEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             556799999999739934--999689888877745776547767865004699999999985999999999999799999


Q ss_pred             HHHH
Q ss_conf             8425
Q gi|254780215|r  253 LFSK  256 (262)
Q Consensus       253 ~f~~  256 (262)
                      +||.
T Consensus       321 ~lgl  324 (374)
T cd01317         321 ILGL  324 (374)
T ss_pred             HHCC
T ss_conf             9699


No 22 
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=98.40  E-value=0.00014  Score=51.09  Aligned_cols=239  Identities=19%  Similarity=0.224  Sum_probs=119.4

Q ss_pred             EEEEECCCCCHH---HHCCHHHHHHHHHHCCCCEEEEECC------CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             168613888756---5226899999999869989999167------9877899999998557233211244544334467
Q gi|254780215|r    2 LIDTHCHLLLPD---FDEDRHDVIMRAHQANVLKMIAIAI------KVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEEN   72 (262)
Q Consensus         2 ~iD~H~HL~~~~---~~~d~~~~i~~a~~~gv~~~i~~~~------~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~   72 (262)
                      +||.|+|+..+.   ..+|+..--..|...||..++..-.      +.+......+.+++   ..+.-+|+|.--.....
T Consensus         7 ~iD~HvH~r~pg~~~~ked~~s~t~AAa~GGvTtv~~mPnt~p~~~~~~~~~~~~~~a~~---~~~vd~~~~~~~~~~~~   83 (337)
T cd01302           7 FIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEE---SSYVDFSFHAGIGPGDV   83 (337)
T ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC---CCCEEEEEEEEEECCCC
T ss_conf             787033257899988643599999999848800799898999998989999999998613---68635766888615755


Q ss_pred             HHHHHHHHHHCCCCCCCEECCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH---------------
Q ss_conf             88998853100133321004467755332---211102467899998766420442033000233---------------
Q gi|254780215|r   73 EVLVDELVCLASHPRVVAIGETGLDRYHN---AHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD---------------  134 (262)
Q Consensus        73 ~~~~~~l~~l~~~~~~~aIGEiGLD~~~~---~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~---------------  134 (262)
                         .+++..+.. .     |-+|+-.|-.   ......-...+.+.++-+.+++.++++||..+-               
T Consensus        84 ---~~el~~~~~-~-----g~~~~k~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~HaEr~~~la~~~g~~lhi~Hv  154 (337)
T cd01302          84 ---TDELKKLFD-A-----GINSLKVFMNYYFGELFDVDDGTLMRTFLEIASRGGPVMVHAERAAQLAEEAGANVHIAHV  154 (337)
T ss_pred             ---HHHHHHHHH-C-----CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCEEEEEC
T ss_conf             ---778999887-6-----7320228987337876547999999999988757997997088899999987998999938


Q ss_pred             --HHHHHHHHHHHHCCC---CCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH-HHHHHHHHHCCCCCCEEEEEC-CC
Q ss_conf             --357999853100036---75331121464023443210352020233221133-322333321056671798307-86
Q gi|254780215|r  135 --DDMAAILQEEMKKGP---FPFVIHCFSSSQKLADICLELGGYISFTGMITFPK-YDALRAIARGIPMDRVLVETD-SP  207 (262)
Q Consensus       135 --~~~l~iL~~~~~~~~---~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~-~~~~~e~v~~iPldriLlETD-sP  207 (262)
                        .+.++++++....+.   .-+..|.+.=+.+.   +.+.|.++-++|.+--+. .+.+.+.++.=-.|  .+-|| +|
T Consensus       155 St~~sle~I~~ak~~G~~Vt~Ev~phhL~l~~~~---~~~~~~~~k~~PPLR~~~d~~aL~~~l~~G~ID--~i~SDHaP  229 (337)
T cd01302         155 SSGEALELIKFAKNKGVKVTCEVCPHHLFLDESM---LRLNGAWGKVNPPLRSKEDREALWEGVKNGKID--TIASDHAP  229 (337)
T ss_pred             CCHHHHHHHHHHHHCCCCEECCCCHHHHCCCHHH---HHCCCCCEECCCCCCCHHHHHHHHHHHHCCCCC--EEEECCCC
T ss_conf             9989999999988729836646435554299878---713586364079989778999999988749955--89858889


Q ss_pred             CCCCCC-----C----CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             678777-----6----88758824499999999987289989999999999999842568
Q gi|254780215|r  208 YIVPVS-----C----QGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKIS  258 (262)
Q Consensus       208 ~l~p~~-----~----r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~~  258 (262)
                      +.....     +    .|-..--..++.++..+.+ .+++.+++.+.+..|--|+||..+
T Consensus       230 ~~~~~K~~~~~f~~a~~G~~glet~lpl~l~~~~~-~~lsl~~~v~~~s~nPAki~gl~~  288 (337)
T cd01302         230 HSKEEKESGKDIWKAPPGFPGLETRLPILLTEGVK-RGLSLETLVEILSENPARIFGLYP  288 (337)
T ss_pred             CCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             89888102467464889875277799999999985-499999999999788999959898


No 23 
>PRK07369 dihydroorotase; Provisional
Probab=98.34  E-value=0.00017  Score=50.64  Aligned_cols=238  Identities=17%  Similarity=0.161  Sum_probs=115.5

Q ss_pred             EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEE-CCCH-----HHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCC
Q ss_conf             1686138887565--2268999999998699899991-6798-----7789999999855723321124454433--446
Q gi|254780215|r    2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAI-AIKV-----KDFVPLIKLCQDYPSSIFCSVGTHPCHA--HEE   71 (262)
Q Consensus         2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~-~~~~-----~~~~~~~~l~~~~p~~i~~a~GiHP~~~--~~~   71 (262)
                      +||.|+|+..+.+  .+++..--..|...|+..++.+ .+.+     +.+....+.+.+    ......+|+|.+  ...
T Consensus        59 ~ID~HvH~~~pg~~~ked~~tgt~AAa~GGvTtv~~mPnt~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~  134 (419)
T PRK07369         59 LVDLYSHSGEPGFEERETLASLAAAAAAGGFTRVAILPDTSPPLDNPATLARLQQQLQG----PSPPPQLLFWGALTLGG  134 (419)
T ss_pred             EEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC----CCCCEEEEEEEEEECCC
T ss_conf             99787457999864304298899999818976999898999998859999999999600----69973999971245386


Q ss_pred             CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-----------------
Q ss_conf             788998853100133321004467755332211102467899998766420442033000233-----------------
Q gi|254780215|r   72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD-----------------  134 (262)
Q Consensus        72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~-----------------  134 (262)
                      ....+.++..+... .+     +|.   .+..+.. -..++.+-++.++.+++|+++||.+..                 
T Consensus       135 ~~~~l~el~~l~~~-Gv-----~~f---~~~~~~~-~~~~l~~~l~~~~~~~~~v~~h~ed~~l~~~~~~~~g~~~~~~~  204 (419)
T PRK07369        135 QGKQLTELAELAAA-GV-----VGF---TDGQPLE-NLALLRRLLEYLAPLGKPVALWPCDRQLAGNGVMREGPDALRLG  204 (419)
T ss_pred             CHHHHHHHHHHHHC-CC-----EEE---CCCCCCC-CHHHHHHHHHHHHHCCCEEEEECCCHHHHHCHHHHCCCCCHHCC
T ss_conf             24567766667607-96-----890---4896548-99999999999986399189950689887272654486402028


Q ss_pred             -------HHH---HHHHHHHHHCCCCCC-CCEECC-CCHHHHHHHHCCCCEE-----------------------ECCCC
Q ss_conf             -------357---999853100036753-311214-6402344321035202-----------------------02332
Q gi|254780215|r  135 -------DDM---AAILQEEMKKGPFPF-VIHCFS-SSQKLADICLELGGYI-----------------------SFTGM  179 (262)
Q Consensus       135 -------~~~---l~iL~~~~~~~~~~~-i~H~Fs-G~~~~~~~~l~~g~y~-----------------------S~~g~  179 (262)
                             .|.   .+.+. .......++ |.|-=+ .+.+.++++...|.-+                       -++|.
T Consensus       205 ~~~rP~~~E~~av~r~i~-lA~~~g~~lhi~HvSs~~~~e~i~~ak~~G~~vt~Et~phhL~l~~~~~~~~~~~~k~~PP  283 (419)
T PRK07369        205 LPGIPASAETAALAALLE-LVAAIGTPVHLMRVSTARSVELIAQAKARGLPITASTTWMHLLLNTEALASYDPNLRLDPP  283 (419)
T ss_pred             CCCCCHHHHHHHHHHHHH-HHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCEEECCCHHHHHCCHHHHHCCCCCEEEECC
T ss_conf             998844554699999999-9887538489961685899999998886398089646257554789787275775798589


Q ss_pred             CCHHHHHHHHHHHHCCCCCCE-EEEEC-CCCCCCCCCC-------CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             211333223333210566717-98307-8667877768-------87588244999999999872899899999999999
Q gi|254780215|r  180 ITFPKYDALRAIARGIPMDRV-LVETD-SPYIVPVSCQ-------GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNA  250 (262)
Q Consensus       180 i~~~~~~~~~e~v~~iPldri-LlETD-sP~l~p~~~r-------~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~  250 (262)
                      +--++  ....+.+.+--..| .+-|| +|+...+...       |-..--.+++..+..+..-..++++.+.+.+..|-
T Consensus       284 LR~~~--d~~aLw~al~~G~Id~i~SDHaP~~~~eK~~~f~~ap~G~~Gve~~lpll~~~~V~~g~lsl~~~v~~~s~nP  361 (419)
T PRK07369        284 LGNPS--DRQALIEGIRTGIIDAIAIDHTPYTYEEKTVAFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNP  361 (419)
T ss_pred             CCCHH--HHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             98988--9999987873697679982888999888448853489983438879999999998749989999999977789


Q ss_pred             HHHHHH
Q ss_conf             998425
Q gi|254780215|r  251 LKLFSK  256 (262)
Q Consensus       251 ~~~f~~  256 (262)
                      -|+||-
T Consensus       362 Aki~gl  367 (419)
T PRK07369        362 ARCLGL  367 (419)
T ss_pred             HHHHCC
T ss_conf             998399


No 24 
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=98.34  E-value=2.4e-05  Score=56.34  Aligned_cols=219  Identities=21%  Similarity=0.289  Sum_probs=119.5

Q ss_pred             EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEECC----CHHHHHHHHHHHHHCCCCCCCCCCCCCCC--C-CC-C
Q ss_conf             16861388875--65226899999999869989999167----98778999999985572332112445443--3-44-6
Q gi|254780215|r    2 LIDTHCHLLLP--DFDEDRHDVIMRAHQANVLKMIAIAI----KVKDFVPLIKLCQDYPSSIFCSVGTHPCH--A-HE-E   71 (262)
Q Consensus         2 ~iD~H~HL~~~--~~~~d~~~~i~~a~~~gv~~~i~~~~----~~~~~~~~~~l~~~~p~~i~~a~GiHP~~--~-~~-~   71 (262)
                      |||.|.|.-..  ...-+.+..   +...||..++-.|.    +...|.+..--+.+  ..|++-+-+-|--  + ++ +
T Consensus        59 ~iDlHvHvy~ggt~~~v~pd~~---ga~~GvTTvVDAGSaGaanf~gF~r~vie~Sr--~RI~Aflnvs~~Gl~a~nE~~  133 (386)
T COG3964          59 LIDLHVHVYYGGTEGGVRPDMY---GAPNGVTTVVDAGSAGAANFDGFYRTVIEASR--VRIKAFLNVSPPGLTASNELY  133 (386)
T ss_pred             EEEEEEEEECCCCCCCCCHHHC---CCCCCCEEEEECCCCCCCCHHHHHHHHHCCHH--HEEEEEEECCCCCEEEEHHHC
T ss_conf             6544567843897567487770---66678348972677675313567887542023--400024522675312021008


Q ss_pred             --CHHHHHHHHH-HCCCCCC----------CEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH---HHHH
Q ss_conf             --7889988531-0013332----------1004467755332211102467899998766420442033000---2333
Q gi|254780215|r   72 --NEVLVDELVC-LASHPRV----------VAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR---SADD  135 (262)
Q Consensus        72 --~~~~~~~l~~-l~~~~~~----------~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r---~a~~  135 (262)
                        ..-+.+.+.. +.+++.+          ..+||-|+      .+       .+.-+++|+.+++|+++|.-   .-.+
T Consensus       134 d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~g~~Gi------tP-------l~la~~ia~~~klPlmvHigePp~~~d  200 (386)
T COG3964         134 DPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDIGEYGI------TP-------LTLALRIANDLKLPLMVHIGEPPVLMD  200 (386)
T ss_pred             CHHHCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCC------CH-------HHHHHHHHHHCCCCEEEECCCCCCCHH
T ss_conf             81238978999999858570787788754001334687------65-------789999986159966996599996288


Q ss_pred             HHHHHHHHHHHCCCCCCCCEECCCCHH-----------HHHHHHCCCCEEECC-CCC--CHHHHHHHHHHHHCCCCCCEE
Q ss_conf             579998531000367533112146402-----------344321035202023-322--113332233332105667179
Q gi|254780215|r  136 DMAAILQEEMKKGPFPFVIHCFSSSQK-----------LADICLELGGYISFT-GMI--TFPKYDALRAIARGIPMDRVL  201 (262)
Q Consensus       136 ~~l~iL~~~~~~~~~~~i~H~FsG~~~-----------~~~~~l~~g~y~S~~-g~i--~~~~~~~~~e~v~~iPldriL  201 (262)
                      |+++.|..    +  -+|-|||+|...           .++++.+.|.-|-++ |.-  .|.-++  +.+..-+-.+  .
T Consensus       201 EvlerL~~----G--DIitHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~asfsf~vAr--~aia~GllP~--~  270 (386)
T COG3964         201 EVLERLRR----G--DIITHCFNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGRASFSFNVAR--RAIANGLLPD--I  270 (386)
T ss_pred             HHHHHCCC----C--CEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCEEEHHHHH--HHHHCCCCCC--E
T ss_conf             89976357----7--65654036999972266255789999987566489724873202479999--9986577864--2


Q ss_pred             EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             830786678777688758824499999999987--2899899999999999998425
Q gi|254780215|r  202 VETDSPYIVPVSCQGKRNEPAYVVNTAKALAKE--KDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       202 lETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i--~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      +-||-      ..+.+.|-|.  ...+-.++++  .||+.+++.+.+++|.-++.+.
T Consensus       271 ISSDl------h~~~~~n~Pv--~dla~~mSKllalgmpl~~Vi~avT~npA~~i~l  319 (386)
T COG3964         271 ISSDL------HTITKLNGPV--YDLAWIMSKLLALGMPLTDVINAVTHNPAVLIGL  319 (386)
T ss_pred             EECCC------EEEEECCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHCC
T ss_conf             32231------0353057618--7899999999872896899999985197877383


No 25 
>PRK02382 dihydroorotase; Provisional
Probab=98.26  E-value=0.00023  Score=49.74  Aligned_cols=239  Identities=15%  Similarity=0.175  Sum_probs=116.0

Q ss_pred             EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             1686138887565--22689999999986998999916------798778999999985572332112445443344678
Q gi|254780215|r    2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE   73 (262)
Q Consensus         2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~   73 (262)
                      +||.|+|+..+.+  .+++..-...|...||+.++...      .+.+.+....+.++..   .+.-+|+|---..... 
T Consensus        55 ~ID~HvH~~~pg~~~~ed~~tgs~aAa~GGvTTvv~~p~t~p~~~~~~~~~~~~~~~~~~---~~vd~~~~~~~t~~~~-  130 (440)
T PRK02382         55 GIDVHVHFREPGMEHKETWYTGSCSAAAGGVTTVVDQPNTDPPTTDAESFKEKLALAARK---SIVDFGINGGVTGNWE-  130 (440)
T ss_pred             EEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC---CEEEEEEEEEECCCCC-
T ss_conf             997450669898654355656689998299259935778899947799999999985668---6568988876359978-


Q ss_pred             HHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHH------------------
Q ss_conf             89988531001333210044677553322111024678999987664204420330002333------------------
Q gi|254780215|r   74 VLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADD------------------  135 (262)
Q Consensus        74 ~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~------------------  135 (262)
                        .+.+.+    ..+.++|++.+..........  ...|.+-++.|++++.++.+|+-+..-                  
T Consensus       131 --~~~l~~----~g~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~v~~H~Ed~~~~~~~~~~~~~~~~~~~~~  202 (440)
T PRK02382        131 --LEELWR----LGLFAFGEIFMAESTGGMGID--EELFAEALKEITRLDALATIHAEDEDMRLELEKLLKGDDSADAHS  202 (440)
T ss_pred             --HHHHHH----CCCCCEEEEEEECCCCCCCCC--HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHC
T ss_conf             --899975----677723169997389874729--999999999998659869993388789998678756886867703


Q ss_pred             -------H---HHHHHHHHHHCCCCCCCC-EECC-CCHHHHHH------------------HHCCCCEEECCCCCCHHHH
Q ss_conf             -------5---799985310003675331-1214-64023443------------------2103520202332211333
Q gi|254780215|r  136 -------D---MAAILQEEMKKGPFPFVI-HCFS-SSQKLADI------------------CLELGGYISFTGMITFPKY  185 (262)
Q Consensus       136 -------~---~l~iL~~~~~~~~~~~i~-H~Fs-G~~~~~~~------------------~l~~g~y~S~~g~i~~~~~  185 (262)
                             |   +.+.+. .......++++ |.=+ .+.+.+++                  +.+.|.+.-++|.+..+  
T Consensus       203 ~~rp~~~E~~av~r~i~-la~~~g~~vhi~H~st~~~v~~ir~a~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~--  279 (440)
T PRK02382        203 AYRPNAAEISAVERALE-VARELGARIHICHISTPEGVDLIREPGVTCEVTPHHLFLSRRDWDRLGTFGKMNPPLRSE--  279 (440)
T ss_pred             CCCCHHHHHHHHHHHHH-HHHHCCCCEEEEECCCHHHHHHHHCCEEEEEECCCHHHCCHHHHHHHCCCCCCCCCCCCH--
T ss_conf             66988999999999999-887539935877548689996543554899972135548716666507630137888868--


Q ss_pred             HHHHHHHHCCCCCCE-EEEEC-CCCCCCCCCC-------CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             223333210566717-98307-8667877768-------87588244999999999872899899999999999998425
Q gi|254780215|r  186 DALRAIARGIPMDRV-LVETD-SPYIVPVSCQ-------GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       186 ~~~~e~v~~iPldri-LlETD-sP~l~p~~~r-------~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      .....+.+.+....| ++-|| +|+.......       |-..--..++.....+ .-..++++++.+.+..|--++||-
T Consensus       280 ~d~~aL~~~l~~G~id~iasDhaP~~~~~K~~~~~~a~~G~~g~et~lp~~~~~v-~~~~lsle~~v~~~s~nPAki~Gl  358 (440)
T PRK02382        280 HRRKALWNRLNDGTIDMVASDHAPHTEAEKDADIWDAPSGVPGVETMLPLMLAAV-RKNELPLERVIDVTSANPADIFGL  358 (440)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             8999999987559921884388887867736780216689863999999999988-728968999999998889998598


No 26 
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=98.24  E-value=0.00067  Score=46.64  Aligned_cols=247  Identities=18%  Similarity=0.293  Sum_probs=108.0

Q ss_pred             EEEEECCCCC----HHHH-CCHHHHHHHHHHCCCCEEEEE-CCC-----HHHHH-HHHHHHHHCCCCCCCCCCC-C-CCC
Q ss_conf             1686138887----5652-268999999998699899991-679-----87789-9999998557233211244-5-443
Q gi|254780215|r    2 LIDTHCHLLL----PDFD-EDRHDVIMRAHQANVLKMIAI-AIK-----VKDFV-PLIKLCQDYPSSIFCSVGT-H-PCH   67 (262)
Q Consensus         2 ~iD~H~HL~~----~~~~-~d~~~~i~~a~~~gv~~~i~~-~~~-----~~~~~-~~~~l~~~~p~~i~~a~Gi-H-P~~   67 (262)
                      |||+|+|+..    ..|. ...+.....+...|+..++.+ +++     +++.. +...+... .-..|...|- | |. 
T Consensus        57 ~ID~H~Hi~~~gg~~~~~~~~pe~~~~~~~~~GvTTv~~~~~~~~~~~~~~~~~~~~~~~~~~-gi~~~~~~g~~~~~~-  134 (384)
T PRK10657         57 FIDQHVHIIGGGGEGGFTTRTPEVQLSDLTEAGITTVVGLLGTDSITRSPESLLAKARALEEE-GISAYMYTGSYHVPV-  134 (384)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCCCCCCC-
T ss_conf             100424988888887766689069999999759756945778886567999999999998863-963888516656871-


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCC--CEEECHHH---HHHHHHHH
Q ss_conf             3446788998853100133321004467755332211102467899998766420-442--03300023---33579998
Q gi|254780215|r   68 AHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRIT-GIP--LVIHSRSA---DDDMAAIL  141 (262)
Q Consensus        68 ~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~-~~p--v~iH~r~a---~~~~l~iL  141 (262)
                       ........+   .+..-+++.++|++.+-.++...+......-...+..++.-+ +++  +.+|+..+   ...+.+++
T Consensus       135 -~~~~~~~~~---d~~~~~~v~g~g~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~~~~~~~h~~~~~~~~~~~~~~~  210 (384)
T PRK10657        135 -KTITGSIEK---DIALIDKVIGVGEIAISDHRSSQPTVEELARLAAEARVGGLLSGKPGVVHFHMGDGKKGLQPLFELL  210 (384)
T ss_pred             -CCCCHHHHH---HHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf             -001036787---8987887506550653135445788999999999988888862887679998257688999999999


Q ss_pred             HHHHHCCCCC-C-CCEECCCCH--HHHHHHHCCCCEEECCCCCCHHH----HHHHHH-HHHCCCCCCEEEEECCCCCCCC
Q ss_conf             5310003675-3-311214640--23443210352020233221133----322333-3210566717983078667877
Q gi|254780215|r  142 QEEMKKGPFP-F-VIHCFSSSQ--KLADICLELGGYISFTGMITFPK----YDALRA-IARGIPMDRVLVETDSPYIVPV  212 (262)
Q Consensus       142 ~~~~~~~~~~-~-i~H~FsG~~--~~~~~~l~~g~y~S~~g~i~~~~----~~~~~e-~v~~iPldriLlETDsP~l~p~  212 (262)
                      .+.  .-+.. . ..|......  +..-++.+.|.++.++.......    .+.++. .-+.++.+++.+-||+.-..|.
T Consensus       211 ~~~--~~~~~~~~~~H~~~~~~l~~~~~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~~~~gi~~~~i~~~sD~~~~~~~  288 (384)
T PRK10657        211 ENT--DIPISQFLPTHVNRNEPLFEQGLEFAKKGGVIDLTTSIDEEGEVAPAEAIKRALEAGIPLERITLSSDGNGSLPK  288 (384)
T ss_pred             HHC--CCCEEEEECCHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf             835--984168754032275779999999998288378985666667657499999999818994358996279888654


Q ss_pred             CC-CC-----CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             76-88-----7588244999999999872899899999999999998425
Q gi|254780215|r  213 SC-QG-----KRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       213 ~~-r~-----~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      -. .+     ....+..+...+..+..-.++|++++.+.++.|.-+.||.
T Consensus       289 ~~~~~~~~~~g~~~~~t~~~~~~~~v~~~glsl~~av~~~T~nPAk~lgl  338 (384)
T PRK10657        289 FDEDGNLTGLGVASVESLLETLRELVKDYGLSLEDALRPLTSNVARVLKL  338 (384)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             13356615678887888999999999986999999999999999998299


No 27 
>PRK09357 pyrC dihydroorotase; Validated
Probab=98.20  E-value=0.00064  Score=46.82  Aligned_cols=239  Identities=18%  Similarity=0.203  Sum_probs=111.2

Q ss_pred             EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEEC-C-----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCC
Q ss_conf             168613888756--522689999999986998999916-7-----987789999999855723321124454433--446
Q gi|254780215|r    2 LIDTHCHLLLPD--FDEDRHDVIMRAHQANVLKMIAIA-I-----KVKDFVPLIKLCQDYPSSIFCSVGTHPCHA--HEE   71 (262)
Q Consensus         2 ~iD~H~HL~~~~--~~~d~~~~i~~a~~~gv~~~i~~~-~-----~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~--~~~   71 (262)
                      |||+|||+..+.  ..+++..-...|...||..++... +     +.+......+.+++.+ .+    -++|+.+  ...
T Consensus        57 fID~H~H~~~pg~~~~~~~~~g~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~t~~~  131 (425)
T PRK09357         57 LVDLHVHLREPGQEYKETIETGTRAAAAGGFTTVVAMPNTNPVIDTPEVVEYVLDLAKEAG-VV----DVLPVGAITKGL  131 (425)
T ss_pred             EEECCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC-CC----EEEEEECCCCCC
T ss_conf             8977716788997630036676899985780589616898777785999999998642048-51----146752135776


Q ss_pred             CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-----------------
Q ss_conf             788998853100133321004467755332211102467899998766420442033000233-----------------
Q gi|254780215|r   72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD-----------------  134 (262)
Q Consensus        72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~-----------------  134 (262)
                      ....+..+..+.. ..+.++..-|. +   ..  .  -..+++-++.|++++.|+.+|+.+..                 
T Consensus       132 ~~~~l~~~~~l~~-~g~~~~s~~~~-~---~~--~--~~~l~~~~~~a~~~~~~~~~h~e~~~l~~~~~~~~g~~~~~~~  202 (425)
T PRK09357        132 AGEELTEFGALAE-AGVVAFSDDGI-P---VQ--D--ARLMRRALEYAKKLDLLIAQHCEDPSLTEGGVMNEGIVAARLG  202 (425)
T ss_pred             CHHHHHHHHHHHH-CCEEEEECCCC-E---EC--C--HHHHHHHHHHHHHCCCEEEECCCCHHHHHCHHHCCCCCHHHCC
T ss_conf             5045677776542-57479813992-3---04--5--8999999988864595699742523344220224686312038


Q ss_pred             -------HHHHHHHH--HHHHCCCCCCCC-EECC-CCHHHHHHHHCCCCEEE---------C--------------CCCC
Q ss_conf             -------35799985--310003675331-1214-64023443210352020---------2--------------3322
Q gi|254780215|r  135 -------DDMAAILQ--EEMKKGPFPFVI-HCFS-SSQKLADICLELGGYIS---------F--------------TGMI  180 (262)
Q Consensus       135 -------~~~l~iL~--~~~~~~~~~~i~-H~Fs-G~~~~~~~~l~~g~y~S---------~--------------~g~i  180 (262)
                             .|...+-+  ........++++ |.-+ ++.+.++.+.+.|.-++         +              +|.+
T Consensus       203 ~~~~p~~~E~~~i~r~~~la~~~g~~~hi~H~ss~~~le~i~~ak~~G~~vt~e~~p~~l~~t~~~~~~~~~~~k~~PpL  282 (425)
T PRK09357        203 LPGIPEVAEEVAIARDVLLAEETGARYHICHVSTAGSVELIRFAKALGIKVTAEVTPHHLLLTDEDLLTYDGNYKVNPPL  282 (425)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEECHHHHHCCHHHHHCCCCCEEECCCC
T ss_conf             99997678898999999988761992687514616589999999983897523414556528985762368632207986


Q ss_pred             CH-HHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             11-33322333321056671798307-866787776-------8875882449999999998728998999999999999
Q gi|254780215|r  181 TF-PKYDALRAIARGIPMDRVLVETD-SPYIVPVSC-------QGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNAL  251 (262)
Q Consensus       181 ~~-~~~~~~~e~v~~iPldriLlETD-sP~l~p~~~-------r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~  251 (262)
                      .- .....+.+.++.=-.  -.+=|| +|+..-...       -|-.+-...++.++..+.+-..++++++.+.++.|.-
T Consensus       283 r~~~~~~~l~~~l~~g~i--~~i~tDh~P~~~~~k~~~~~~~~~G~~g~e~~~~~~~~~~v~~~~lsle~~v~~~T~nPA  360 (425)
T PRK09357        283 RSKEDREALIEALKDGTI--DAIATDHAPHAEEEKECEFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKLSINPA  360 (425)
T ss_pred             CCHHHHHHHHHHHHCCCE--EEEEECCCCCCHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             525569999999966988--999968888886773445000778987477689999999987599999999999979999


Q ss_pred             HHHHH
Q ss_conf             98425
Q gi|254780215|r  252 KLFSK  256 (262)
Q Consensus       252 ~~f~~  256 (262)
                      +.||.
T Consensus       361 k~lGl  365 (425)
T PRK09357        361 RILGL  365 (425)
T ss_pred             HHHCC
T ss_conf             99599


No 28 
>PRK07575 dihydroorotase; Provisional
Probab=98.13  E-value=0.00046  Score=47.76  Aligned_cols=244  Identities=14%  Similarity=0.154  Sum_probs=116.9

Q ss_pred             EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEE-CCC-----HHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCC
Q ss_conf             1686138887565--2268999999998699899991-679-----877899999998557233--21124454433446
Q gi|254780215|r    2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAI-AIK-----VKDFVPLIKLCQDYPSSI--FCSVGTHPCHAHEE   71 (262)
Q Consensus         2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~-~~~-----~~~~~~~~~l~~~~p~~i--~~a~GiHP~~~~~~   71 (262)
                      +||.|+|+..+.+  .+|+..-...|...||..++.+ .++     ........+.+++-. .+  ...+|..|....+.
T Consensus        57 ~ID~HvH~~~pg~~~ked~~tgs~AAa~GGvTtv~~mpnt~P~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~~~el  135 (439)
T PRK07575         57 VIDPQVHFREPGLEHKEDLFTASRACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKC-LVNYGFFIGATPDNLPDL  135 (439)
T ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC-EECCCEEEECCCCCHHHH
T ss_conf             8976525589987522047665899984987899965788877554899999999860167-233423541158568999


Q ss_pred             -----------------------CHHHHHHHHHHCCCCCCCEE----------------CCCCCCCCCCCCCCHHHHHHH
Q ss_conf             -----------------------78899885310013332100----------------446775533221110246789
Q gi|254780215|r   72 -----------------------NEVLVDELVCLASHPRVVAI----------------GETGLDRYHNAHTIEEQKVVF  112 (262)
Q Consensus        72 -----------------------~~~~~~~l~~l~~~~~~~aI----------------GEiGLD~~~~~~~~e~Q~~vF  112 (262)
                                             ....++.+.  ......+++                |..+...+-...+.+......
T Consensus       136 ~~~~~~~g~k~f~~~~~~~~~~~~~~~l~~i~--~~~~~~i~~H~Ed~~~i~~~~~~~~g~~~~~~~~~~~~~~~e~~ai  213 (439)
T PRK07575        136 LTANPTCGIKIFMGSSHGPLLVDDEAALERIF--AEGRRLIAVHAEDQARIRARRELFAGITDPAIHSQIQDEEAALLAT  213 (439)
T ss_pred             HHHCCCCCEEEEECCCCCCEECCHHHHHHHHH--HHCCCEEEEECCCHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHH
T ss_conf             97422374678612577862036599999999--7479718983466579997788747988856705558899999999


Q ss_pred             HHHHHHHHHCCCCCEE-ECHHHHHHHHHHHHHHHHCCC-CCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHH
Q ss_conf             9998766420442033-000233357999853100036-75331121464023443210352020233221133322333
Q gi|254780215|r  113 LRHIEASRITGIPLVI-HSRSADDDMAAILQEEMKKGP-FPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRA  190 (262)
Q Consensus       113 ~~ql~lA~e~~~pv~i-H~r~a~~~~l~iL~~~~~~~~-~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e  190 (262)
                      .+-+++|+.++.|+-| |.-.  .+.++++++...... .-+..|...-+.+.   +.+.|.++-++|.+--+.  ....
T Consensus       214 ~~~~~la~~~~~~~hi~hiSs--~~s~~~i~~ak~~~Vt~ev~phhL~l~~~~---~~~~~~~~k~~PPLRs~~--d~~a  286 (439)
T PRK07575        214 RLALKLSKKYQRRLHILHLST--GDEAELLRQDKPAWVTAEVTPQHLLLNTDA---YAKIGSLAQMNPPLRSPE--DNEV  286 (439)
T ss_pred             HHHHHHHHHHCCEEEEEECCC--HHHHHHHHHHCCCCCEEEECHHHHHCCHHH---HCCCCCEEEECCCCCCHH--HHHH
T ss_conf             999999998498189995174--899999876435881112321021068657---444684599889999979--9999


Q ss_pred             HHHCCCCCCE-EEEEC-CCCCCCCCCCCCCCCH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3210566717-98307-8667877768875882-------44999999999872899899999999999998425
Q gi|254780215|r  191 IARGIPMDRV-LVETD-SPYIVPVSCQGKRNEP-------AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       191 ~v~~iPldri-LlETD-sP~l~p~~~r~~~n~P-------~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      +.+.+--.-| .+-|| +|+-......+-.+.|       .+++.++..+-+ ..++++++.+.+..|--++||-
T Consensus       287 L~~~l~~G~Id~i~sDH~P~~~~~K~~~~~~a~~G~~g~e~~lpl~~~~~~~-~~i~l~~~v~~~s~nPAkilgl  360 (439)
T PRK07575        287 LWQALLDGVIDFIATDHAPHTLEEKAQPYPNSPSGMPGVETSLPLMLTAAMA-GKCTVAQVVRWMSTAVARAYGI  360 (439)
T ss_pred             HHHHHHCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHCHHHHHCC
T ss_conf             9988608976899949998897882479876776732188899999999982-8802999999972354986497


No 29 
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=98.12  E-value=0.00066  Score=46.69  Aligned_cols=213  Identities=12%  Similarity=0.060  Sum_probs=115.7

Q ss_pred             HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHC---CCCCCCEECCCCC
Q ss_conf             999986998999916798778999999985572332112445443344678899885---3100---1333210044677
Q gi|254780215|r   23 MRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDEL---VCLA---SHPRVVAIGETGL   96 (262)
Q Consensus        23 ~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l---~~l~---~~~~~~aIGEiGL   96 (262)
                      .++.++|++.++......+...++   +.+.+-..+.++|.......+.......+.   .+..   .++++. ++ +|.
T Consensus       104 ~e~l~~G~Tt~~D~~~~~~~~~~a---~~~~GiR~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-~~p  178 (419)
T PRK08393        104 LEMARSGTTTFVDMYFHMEEVAKA---TLEVGLRGYLGYGMVDLEDPEKTEKEIKETEKLYEFITKLNSPLVN-FV-LAP  178 (419)
T ss_pred             HHHHHCCCEEEEEECCCHHHHHHH---HHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE-EE-EEC
T ss_conf             999868976999860549999999---9970980797541167898266777799999999998646898536-99-957


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHH-----------HHHHHHHCCCCCCCCEECCCCHHHHH
Q ss_conf             5533221110246789999876642044203300023335799-----------98531000367533112146402344
Q gi|254780215|r   97 DRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAA-----------ILQEEMKKGPFPFVIHCFSSSQKLAD  165 (262)
Q Consensus        97 D~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~-----------iL~~~~~~~~~~~i~H~FsG~~~~~~  165 (262)
                           ..+.....+.+++..++|+++++|+.+|.-....|+-.           .|.+...-++.-++.||--=+.+.++
T Consensus       179 -----~~~~~~s~e~l~~~~~~a~~~~~~~~~Hl~E~~~e~~~~~~~~G~~p~~~l~~~GlL~~~~i~~H~~~l~~~d~~  253 (419)
T PRK08393        179 -----HAPYTCSLACLKWVSKKANEWNKLVTIHLSETMAEIGQIREKYGKSPVVLLDDVGLLNEKLIAAHGVWLSSEDIR  253 (419)
T ss_pred             -----CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEECCCCCCCHHHHH
T ss_conf             -----876759999999999999975991897402768899999987288889998750667875353245537879999


Q ss_pred             HHHCCCCEEECCCCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHC---
Q ss_conf             321035202023322113332---23333210566717983078667877768875882449999---999998728---
Q gi|254780215|r  166 ICLELGGYISFTGMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNT---AKALAKEKD---  236 (262)
Q Consensus       166 ~~l~~g~y~S~~g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~---~~~iA~i~~---  236 (262)
                      .+.+.|..++.+|.....-..   .++++++.  -=++-|=||+.-         .|.+..+...   +..+.+...   
T Consensus       254 lla~~g~~v~~cP~Sn~~lg~g~~p~~~~~~~--Gv~v~LGTD~~~---------~n~~~dm~~emr~a~l~~~~~~~~~  322 (419)
T PRK08393        254 MLASAGVTVAHCPASNMKLGSGVFPLRKALDA--GVNVALGTDGAA---------SNNTLDMLREMRLASLLQKVHHLDP  322 (419)
T ss_pred             HHHHCCCCEEECCCHHHHCCCCCCCHHHHHHC--CCCEEEECCCCC---------CCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99984993787723386617888779999847--997589678777---------7886899999999999978745898


Q ss_pred             --CCHHHHHHHHHHHHHHHHHH
Q ss_conf             --99899999999999998425
Q gi|254780215|r  237 --VSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       237 --~~~eei~~~~~~N~~~~f~~  256 (262)
                        ++.+++.+..+.|.-+.+|.
T Consensus       323 ~~~~~~~vl~maT~~gA~alg~  344 (419)
T PRK08393        323 AIVKSEEIFRMATVNGAKALGL  344 (419)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCC
T ss_conf             8789999999999999998589


No 30 
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=98.12  E-value=0.0012  Score=45.09  Aligned_cols=234  Identities=15%  Similarity=0.166  Sum_probs=124.3

Q ss_pred             EEEEECCCCC-HHHH--------CCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHHCCCC-CCCCCCCC---CC
Q ss_conf             1686138887-5652--------2689999999986998999916--7987789999999855723-32112445---44
Q gi|254780215|r    2 LIDTHCHLLL-PDFD--------EDRHDVIMRAHQANVLKMIAIA--IKVKDFVPLIKLCQDYPSS-IFCSVGTH---PC   66 (262)
Q Consensus         2 ~iD~H~HL~~-~~~~--------~d~~~~i~~a~~~gv~~~i~~~--~~~~~~~~~~~l~~~~p~~-i~~a~GiH---P~   66 (262)
                      |||.|+|=.. ..|.        +.+..+.+...+.|+..++...  .+.+...++++..+.+.+. --..+|+|   |+
T Consensus        55 fIDihihG~~G~~f~d~~~~~t~e~l~~~~~~~~~~GvTs~lpT~iT~~~e~i~~~l~~~~~~~~~~~~~~lGiHlEGPf  134 (381)
T PRK11170         55 FIDLQLNGCGGVQFNDTAEAISVETLEIMQKANLKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQALGLHLEGPY  134 (381)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             98873078888476788644569999999998771687899356568999999999999999975177655689752585


Q ss_pred             CCC------------CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE-ECHHH
Q ss_conf             334------------46788998853100133321004467755332211102467899998766420442033-00023
Q gi|254780215|r   67 HAH------------EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVI-HSRSA  133 (262)
Q Consensus        67 ~~~------------~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~i-H~r~a  133 (262)
                      ...            ..+.+.++.+   ......+.+        .+..| |. .. . +.++...+.+..+++ ||--.
T Consensus       135 is~~k~Gah~~~~i~~p~~e~~~~l---~~~~~~i~~--------vTlAP-E~-~~-~-e~i~~l~~~GI~vs~GHS~A~  199 (381)
T PRK11170        135 LNLVKKGTHNPEFIRKPDAEMVDFL---CENADVITK--------VTLAP-EM-VD-A-EVISKLVKAGIVVSAGHSNAT  199 (381)
T ss_pred             CCCCCCCCCCHHHCCCCCHHHHHHH---HHCCCCEEE--------EEECC-CC-CC-H-HHHHHHHHCCCEEEEECCCCC
T ss_conf             6855578899788379899999999---851697579--------99788-88-88-8-999999988998988558899


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCEECCCCHHHHH-------HHHCC-CCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             33579998531000367533112146402344-------32103-52020233221133322333321056671798307
Q gi|254780215|r  134 DDDMAAILQEEMKKGPFPFVIHCFSSSQKLAD-------ICLEL-GGYISFTGMITFPKYDALRAIARGIPMDRVLVETD  205 (262)
Q Consensus       134 ~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~-------~~l~~-g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETD  205 (262)
                      ++++.+-+..    + .+.+-|.|+|=...-.       ..++. +.|.++=..-..-...-++-+.|..+ ||+.+-||
T Consensus       200 y~~~~~A~~~----G-a~~~THlfNaM~~l~hRepG~vga~l~~~~~~~elI~DG~Hv~p~~~~l~~~~kg-~~~~lVTD  273 (381)
T PRK11170        200 YKEAKAGFRA----G-ITFATHLYNAMPYITGREPGVVGAILDEPDVYCGIIADGLHVDYANIRNAKRLKG-DKLCLVTD  273 (381)
T ss_pred             HHHHHHHHHC----C-CCEEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCC-CCEEEEEC
T ss_conf             9999999986----9-9861148768899788998889999748984478860467089999999998578-83899968


Q ss_pred             CCCCC---CCCCC--CC---------C-------CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             86678---77768--87---------5-------88244999999999872899899999999999998425
Q gi|254780215|r  206 SPYIV---PVSCQ--GK---------R-------NEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       206 sP~l~---p~~~r--~~---------~-------n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      |=..+   +..|+  |+         +       ..-..+...++.+-+.-+++.++..+....|--|++|.
T Consensus       274 am~a~G~~~g~y~lgg~~v~v~~g~~~~~~GtLAGS~ltm~~~vrnlv~~~g~~l~eAv~mas~nPA~~lGl  345 (381)
T PRK11170        274 ATAPAGANIEQFIFAGKTIYYRDGLCVDENGTLSGSALTMIEAVRNLVEHVGIALDEALRMATLYPARAIGV  345 (381)
T ss_pred             CCCCCCCCCCCCCCCCCEEEEECCEEECCCCCEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf             876668999851127857998799898899924201246999999999984999999999999999998099


No 31 
>PRK06189 allantoinase; Provisional
Probab=98.11  E-value=0.0012  Score=44.91  Aligned_cols=85  Identities=13%  Similarity=0.185  Sum_probs=42.3

Q ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHCCCCCCE-EEEEC-CCCCCCCCC--------CCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             03520202332211333223333210566717-98307-866787776--------887588244999999999872899
Q gi|254780215|r  169 ELGGYISFTGMITFPKYDALRAIARGIPMDRV-LVETD-SPYIVPVSC--------QGKRNEPAYVVNTAKALAKEKDVS  238 (262)
Q Consensus       169 ~~g~y~S~~g~i~~~~~~~~~e~v~~iPldri-LlETD-sP~l~p~~~--------r~~~n~P~~i~~~~~~iA~i~~~~  238 (262)
                      +.|..+-++|.+.-+  .....+++.+....| .+-|| +|...-...        .|-..-...++...... .-++++
T Consensus       277 ~~~~~~k~~PpLr~~--~~~~~L~~~l~~g~id~i~sDh~p~~~~~k~~~~~~~~~~G~~g~e~~l~~l~~~~-~~~~l~  353 (433)
T PRK06189        277 RIGAVAKCAPPLRDR--QEVEELWDGLMAGHIDTVSSDHSPSLPDLKTEDDFFEVWGGISGGQSTLLVMLTEG-HERGLP  353 (433)
T ss_pred             HCCCCEEECCCCCCH--HHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCHHHCCCCCCCHHHHHHHHHHHH-HHCCCC
T ss_conf             169623877888997--89999998761696469973899999778447775542477763566899999999-866999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999998425
Q gi|254780215|r  239 YEDLMEETTKNALKLFSK  256 (262)
Q Consensus       239 ~eei~~~~~~N~~~~f~~  256 (262)
                      ++++.+.+..|.-++||.
T Consensus       354 l~~~v~~~s~nPA~~~gL  371 (433)
T PRK06189        354 LEQIARLLATAPAKRFGL  371 (433)
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             999999997889998298


No 32 
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=98.10  E-value=0.00014  Score=51.20  Aligned_cols=227  Identities=17%  Similarity=0.143  Sum_probs=135.0

Q ss_pred             HHHHCCCCEEEEECCCH--HHHHHHHHHHHHCCCCCCCCCCCC-----CCCCCCCC-HHHHHHH----HHHCCCC--CCC
Q ss_conf             99986998999916798--778999999985572332112445-----44334467-8899885----3100133--321
Q gi|254780215|r   24 RAHQANVLKMIAIAIKV--KDFVPLIKLCQDYPSSIFCSVGTH-----PCHAHEEN-EVLVDEL----VCLASHP--RVV   89 (262)
Q Consensus        24 ~a~~~gv~~~i~~~~~~--~~~~~~~~l~~~~p~~i~~a~GiH-----P~~~~~~~-~~~~~~l----~~l~~~~--~~~   89 (262)
                      +....|+..+|-++..-  .+-.+..+.++.-.-+|..+-|+|     |.+.+... ++..+.+    +.-+...  +.-
T Consensus        56 ~~~a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p~~~~~~~i~~~ae~~v~ei~~Gi~gT~ikAG  135 (316)
T COG1735          56 RLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAATGFYKAAFHPEYFALRPIEELAEFVVKEIEEGIAGTGIKAG  135 (316)
T ss_pred             HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99974897686077645474889999999971985897045331343516775078999999999998703467763351


Q ss_pred             EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH--HHHHHHHHHHHHHCCCCCCCC-EEC-CC-CHHHH
Q ss_conf             00446775533221110246789999876642044203300023--335799985310003675331-121-46-40234
Q gi|254780215|r   90 AIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA--DDDMAAILQEEMKKGPFPFVI-HCF-SS-SQKLA  164 (262)
Q Consensus        90 aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a--~~~~l~iL~~~~~~~~~~~i~-H~F-sG-~~~~~  164 (262)
                      -|||+|-  +...++.|  +++|+.--..+++.+.|+++|+-..  .-|.+++|.+.. ..+.++++ |+= +. +....
T Consensus       136 iIk~~~~--~~~iTp~E--ek~lrAaA~A~~~Tg~Pi~tHt~~gt~g~eq~~il~~eg-vdl~~v~igH~d~n~dd~~y~  210 (316)
T COG1735         136 IIKEAGG--SPAITPLE--EKSLRAAARAHKETGAPISTHTPAGTMGLEQLRILAEEG-VDLRKVSIGHMDPNTDDVYYQ  210 (316)
T ss_pred             EEEECCC--CCCCCHHH--HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC-CCHHHEEEECCCCCCCHHHHH
T ss_conf             4664257--66679899--999999999864118971773440030199999999729-986673673258999739999


Q ss_pred             HHHHCCCCEEECCC--C-CCHHHHHH---HHHHHHCCCCCCEEEE-------ECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             43210352020233--2-21133322---3333210566717983-------0786678777688758824499999999
Q gi|254780215|r  165 DICLELGGYISFTG--M-ITFPKYDA---LRAIARGIPMDRVLVE-------TDSPYIVPVSCQGKRNEPAYVVNTAKAL  231 (262)
Q Consensus       165 ~~~l~~g~y~S~~g--~-i~~~~~~~---~~e~v~~iPldriLlE-------TDsP~l~p~~~r~~~n~P~~i~~~~~~i  231 (262)
                      +++.++|.|++|-+  . ..|+..+.   +-+.+..==.|+|++-       +|-| ..-.+.+...+.+.+|....---
T Consensus       211 ~~l~~~Ga~l~fD~iG~d~y~pd~~r~~~~~~l~~~gy~d~i~ls~d~~~~~~~~~-~~~~~~~~~~~g~~~I~~~fIP~  289 (316)
T COG1735         211 KKLADRGAFLEFDRIGKDKYYPDEDRIAPLLELVARGYADLILLSHDDICLSDDVF-LKSMLKANGGWGYGYILNDFIPR  289 (316)
T ss_pred             HHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHH-HHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             99984585687324574232757776515999998667665000333233310477-87665405886614206756799


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9872899899999999999998425
Q gi|254780215|r  232 AKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       232 A~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      .+-+|++.+.+...+.+|-.|+|..
T Consensus       290 Lk~~Gvde~~i~~mlvdNP~r~f~~  314 (316)
T COG1735         290 LKRHGVDEETIDTMLVDNPARLFTA  314 (316)
T ss_pred             HHHCCCCHHHHHHHHHHCHHHHHCC
T ss_conf             9874998999999986198988355


No 33 
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=98.05  E-value=0.00075  Score=46.32  Aligned_cols=211  Identities=14%  Similarity=0.085  Sum_probs=111.8

Q ss_pred             HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCC-CEECCCCC
Q ss_conf             9999869989999167987789999999855723---3211244544334467889988531001--3332-10044677
Q gi|254780215|r   23 MRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSS---IFCSVGTHPCHAHEENEVLVDELVCLAS--HPRV-VAIGETGL   96 (262)
Q Consensus        23 ~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~---i~~a~GiHP~~~~~~~~~~~~~l~~l~~--~~~~-~aIGEiGL   96 (262)
                      .++.++|++.+...+....... +  + +.-+-.   .+..+|.+|.......+...+.+.+...  .+++ .+|   +.
T Consensus        82 ~e~l~~G~Ttv~d~~~~~~~~~-~--~-~~~glr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~p  154 (381)
T cd01312          82 RQMLESGTTSIGAISSDGSLLP-A--L-ASSGLRGVFFNEVIGSNPSAIDFKGETFLERFKRSKSFESQLFIPAI---SP  154 (381)
T ss_pred             HHHHHCCCCEEEECCCCHHHHH-H--H-HHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE---EC
T ss_conf             9999859616651246574899-9--9-97699679985144899002112389999999998614699567999---66


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHH-----------------------------HHHHHHHHHHC
Q ss_conf             5533221110246789999876642044203300023335-----------------------------79998531000
Q gi|254780215|r   97 DRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDD-----------------------------MAAILQEEMKK  147 (262)
Q Consensus        97 D~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~-----------------------------~l~iL~~~~~~  147 (262)
                      -     .+...-.+.+++-.++|+++++|+.+|+-....|                             .++.|.+...-
T Consensus       155 ~-----~~~~~s~e~~~~~~~~a~~~~~~~~~HlaE~~~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~pv~~l~~~G~L  229 (381)
T cd01312         155 H-----APYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLGGL  229 (381)
T ss_pred             C-----CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCC
T ss_conf             8-----88875999999999999853991776025878899999985063135666641000112578989999983998


Q ss_pred             CCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf             367533112146402344321035202023322113332---23333210566717983078667877768875882449
Q gi|254780215|r  148 GPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYV  224 (262)
Q Consensus       148 ~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i  224 (262)
                      ++.-.+.||=--+.+.++.+.+.|..++.+|.....-..   .++++++.  -=++-|=||++--         |...++
T Consensus       230 ~~~~~~aH~~~l~~~di~~la~~g~~v~~cP~Sn~~lg~G~~pi~~~~~~--Gv~v~LGTDg~~~---------n~~~d~  298 (381)
T cd01312         230 GTRVSFVHCVYANLEEAEILASRGASIALCPRSNRLLNGGKLDVSELKKA--GIPVSLGTDGLSS---------NISLSL  298 (381)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCEEEECHHHHHHHCCCCCCHHHHHHC--CCEEEEECCCCCC---------CCCCCH
T ss_conf             99879995258998999999976985887767788746897369999978--8909994899877---------886239


Q ss_pred             HHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999872-----899899999999999998425
Q gi|254780215|r  225 VNTAKALAKEK-----DVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       225 ~~~~~~iA~i~-----~~~~eei~~~~~~N~~~~f~~  256 (262)
                      ....+......     ..+..++.+..+.|.-|.+|.
T Consensus       299 ~~~mr~~~~~~~~~~~~~~~~~~l~~aT~~gA~aLgl  335 (381)
T cd01312         299 LDELRALLDLHPEEDLLELASELLLMATLGGARALGL  335 (381)
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             9999999997245899889999999999999999588


No 34 
>PRK10027 cryptic adenine deaminase; Provisional
Probab=98.04  E-value=0.00044  Score=47.91  Aligned_cols=233  Identities=13%  Similarity=0.147  Sum_probs=137.1

Q ss_pred             EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCCCCCCC-CCCCCC---CCC
Q ss_conf             168613888756522689999999986998999916------7987789999999855723321124-454433---446
Q gi|254780215|r    2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYPSSIFCSVG-THPCHA---HEE   71 (262)
Q Consensus         2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p~~i~~a~G-iHP~~~---~~~   71 (262)
                      |||+|+|+.+.-  -...+..+.+...|.+.+++=.      ...+..+..++.++.-|-.+|..+. +-|.-.   ...
T Consensus        86 ~ID~H~HIESsm--ltP~efA~~vlp~GTTtvv~DpHEiaNV~G~~Gi~~ml~~~~~~pl~~~~~~pScVPat~~~E~~G  163 (588)
T PRK10027         86 FIDAHLHIESSM--MTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCDVNG  163 (588)
T ss_pred             CCCCCCCCCCCC--CCHHHHHHHHHCCCCEEEECCCHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC
T ss_conf             024740560423--299999999873587699728789987438899999998502077405754565688888543577


Q ss_pred             CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             78899885310013332100446775533221110246789999876642044203300023335799985310003675
Q gi|254780215|r   72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFP  151 (262)
Q Consensus        72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~  151 (262)
                      ..-..+.+..+++.+++++.||+ +||-.-.   ........+ |+.+  .++++-=|+-+.-++.+.-.   ..-+.. 
T Consensus       164 a~~~~~~~~~~l~~~~V~gLgEv-Mn~pgV~---~gd~~~l~k-i~~~--~~~~idGHaPglsg~~L~ay---~aaGi~-  232 (588)
T PRK10027        164 ASFTLEQMLAWRDHPQVTGLAEM-MDYPGVI---SGQNALLDK-LDAF--RHLTLDGHCPGLGGKELNAY---IAAGIE-  232 (588)
T ss_pred             CCCCHHHHHHHHCCCCCCEEEEE-CCCCCEE---CCCHHHHHH-HHHC--CCCCCCCCCCCCCHHHHHHH---HHCCCC-
T ss_conf             82799999998638984356751-3776422---598889999-9973--69951367898887889999---861887-


Q ss_pred             CCCEECCCCHHHHHHHHCCCCEEECC-CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             33112146402344321035202023-32211333223333210566717983078667877768875882449999999
Q gi|254780215|r  152 FVIHCFSSSQKLADICLELGGYISFT-GMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKA  230 (262)
Q Consensus       152 ~i~H~FsG~~~~~~~~l~~g~y~S~~-g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~  230 (262)
                       --|-. -+.+.+.+-+++|+|+.+- |.+. +.-+.+..++...+..|+++=||...  |....    +=..+-++++.
T Consensus       233 -sDHE~-~t~eEa~eklr~Gm~v~iRegS~~-~~l~~l~~~i~~~~~~~~~~~TDD~~--p~dl~----~~Ghid~~vr~  303 (588)
T PRK10027        233 -NCHES-YQLEEGRRKLQLGMSLMIREGSAA-RNLNALAPLINEFNSPQCMLCTDDRN--PWEIA----HEGHIDALIRR  303 (588)
T ss_pred             -CCCCC-CCHHHHHHHHHCCCEEEECCCCCH-HHHHHHHHHHHCCCCCCEEEECCCCC--HHHHH----HCCCHHHHHHH
T ss_conf             -32211-779999999968997986278742-54999998862368655379849999--78998----66879999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99872899899999999999998425
Q gi|254780215|r  231 LAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       231 iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      .-+.-+.+++...+-.+-|.-+-|+.
T Consensus       304 AI~~gg~p~~~Ai~mATlN~A~~y~L  329 (588)
T PRK10027        304 LIEQHNVPLHVAYRVASWSTARHFGL  329 (588)
T ss_pred             HHHHCCCCHHHHHHHHHCCHHHHCCC
T ss_conf             99974999899998620259987498


No 35 
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=98.04  E-value=0.0016  Score=44.15  Aligned_cols=138  Identities=18%  Similarity=0.171  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHH--HHHHHHHHHHHHHHC----CCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCH
Q ss_conf             678999987664204420330002--333579998531000----36753311214640234432103520202332211
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRS--ADDDMAAILQEEMKK----GPFPFVIHCFSSSQKLADICLELGGYISFTGMITF  182 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~----~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~  182 (262)
                      .+-|.+.++.|.+++.|+.+|+.+  +.+.+++.+.+....    .....+.||-.-+.+.++++.++|...++.+....
T Consensus       294 ~e~~~~~~~~a~~~g~~v~~Ha~gd~~~~~~l~~~e~~~~~~~~~~~r~~i~H~~~~~~~~~~~~~~~g~~~~~~p~~~~  373 (479)
T cd01300         294 PEELEELVRAADEAGLQVAIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKLGVIASVQPNHLY  373 (479)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHCCCCHHHHHHHHHCCCEEEECHHHHH
T ss_conf             99999999999983983678523627999999999999986688777503300113799999999973975998537764


Q ss_pred             HHH-------------H---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH-HHH--------HHHHCC
Q ss_conf             333-------------2---233332105667179830786678777688758824499999-999--------987289
Q gi|254780215|r  183 PKY-------------D---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTA-KAL--------AKEKDV  237 (262)
Q Consensus       183 ~~~-------------~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~-~~i--------A~i~~~  237 (262)
                      ...             .   .++++.+ -. =++-+=||+|....        .|....+.+ ...        ..-.++
T Consensus       374 ~~~~~~~~~~~g~~~~~~~~p~~~l~~-aG-v~v~lgtD~~~~~~--------~~~~~~~~av~~~~~~~~~~~~~~~~l  443 (479)
T cd01300         374 SDGDAAEDRRLGEERAKRSYPFRSLLD-AG-VPVALGSDAPVAPP--------DPLLGIWAAVTRKTPGGGVLGNPEERL  443 (479)
T ss_pred             CCCHHHHHHHHHHHHHHCCHHHHHHHH-CC-CEEEEECCCCCCCC--------CHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             341676650106878752379999998-89-95998279999887--------889999999845685677465845799


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q ss_conf             9899999999999998425
Q gi|254780215|r  238 SYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       238 ~~eei~~~~~~N~~~~f~~  256 (262)
                      +.++..+..+.|.-+.+|.
T Consensus       444 t~~eaL~~aT~~~A~~lg~  462 (479)
T cd01300         444 SLEEALRAYTIGAAYAIGE  462 (479)
T ss_pred             CHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999999687


No 36 
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=98.02  E-value=0.0018  Score=43.81  Aligned_cols=138  Identities=13%  Similarity=0.157  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHHHHHHH-----------HHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf             67899998766420442033000233357-----------9998531000367533112146402344321035202023
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRSADDDM-----------AAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT  177 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~-----------l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~  177 (262)
                      .+.+++-.++|+++++|+.+|+-....+.           .+.|.+...-++.-.+.||---+.+.++.+.+.|..++.+
T Consensus       217 ~~ll~~~~~~A~~~~~~~~~H~~E~~~e~~~~~~~~G~~pv~~l~~~G~L~~~~~~~H~~~l~~~di~~la~~g~~v~~~  296 (456)
T PRK08203        217 RELMRESAALARRLGVRLHTHLAETVDEIAFCLEKFGMRPVDYLEDLGWLGPDVWLAHCVHLDDAEIARLARTGTGVAHC  296 (456)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEC
T ss_conf             99999999999867993797026764689999998498789999982887888167512249999999999849957878


Q ss_pred             CCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHH----CCCHHHHHHHHHH
Q ss_conf             322113332---23333210566717983078667877768875882449--99999999872----8998999999999
Q gi|254780215|r  178 GMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYV--VNTAKALAKEK----DVSYEDLMEETTK  248 (262)
Q Consensus       178 g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i--~~~~~~iA~i~----~~~~eei~~~~~~  248 (262)
                      |.....-..   .++++.+.  -=++-+=||++-..        +.+.+.  .+.+..+++.+    .++.+++.+-.+.
T Consensus       297 P~Sn~~l~~g~~p~~~l~~a--Gv~v~lGTDg~~sn--------~~~d~~~emr~a~~~~r~~~~~~~l~~~e~l~~AT~  366 (456)
T PRK08203        297 PCSNMRLASGIAPVRELRAA--GVPVGLGVDGSASN--------DGSNMIGEARQALLLQRLRYGPDAMTAREALEIATL  366 (456)
T ss_pred             CHHHHHCCCCCCCHHHHHHC--CCCEEEECCCCCCC--------CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             21220057788889999878--99689832777668--------975799999999999987469977899999999999


Q ss_pred             HHHHHHHH
Q ss_conf             99998425
Q gi|254780215|r  249 NALKLFSK  256 (262)
Q Consensus       249 N~~~~f~~  256 (262)
                      |.-+.+|+
T Consensus       367 ~gA~aLg~  374 (456)
T PRK08203        367 GGARVLGR  374 (456)
T ss_pred             HHHHHHCC
T ss_conf             99998199


No 37 
>PRK13404 dihydropyrimidinase; Provisional
Probab=97.97  E-value=0.0023  Score=43.10  Aligned_cols=34  Identities=15%  Similarity=0.110  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             4999999999872899899999999999998425
Q gi|254780215|r  223 YVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       223 ~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      .++.+....-.-..++++++.+.+..|--|+||-
T Consensus       351 ~lp~l~~~~v~~g~lsl~~~v~~~s~nPAki~Gl  384 (476)
T PRK13404        351 RLPLLFSEGVVKGRISLNQFVALTSTNPAKLYGL  384 (476)
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             8999989999829986999999998889998398


No 38 
>PRK09059 dihydroorotase; Validated
Probab=97.94  E-value=0.0025  Score=42.82  Aligned_cols=237  Identities=15%  Similarity=0.152  Sum_probs=104.6

Q ss_pred             EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEEC-CC-----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--
Q ss_conf             1686138887565--22689999999986998999916-79-----87789999999855723321124454433446--
Q gi|254780215|r    2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAIA-IK-----VKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEE--   71 (262)
Q Consensus         2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~~-~~-----~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~--   71 (262)
                      +||+|+|+..+-.  .++++.--..|...||..++..- +.     ....+...+.++..     ..+.+||+.+-..  
T Consensus        62 ~ID~HvH~~~pg~~~~e~~~t~s~AA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~~~  136 (429)
T PRK09059         62 LVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIMMPDTDPVIDNVALVEFVKRTARDT-----AIVNIHPAAAITKGL  136 (429)
T ss_pred             EEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH-----CCCCCCEEEEEECCC
T ss_conf             898862569988544344888999998289079997579988888499999999860321-----553401378852488


Q ss_pred             CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-----------------
Q ss_conf             788998853100133321004467755332211102467899998766420442033000233-----------------
Q gi|254780215|r   72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD-----------------  134 (262)
Q Consensus        72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~-----------------  134 (262)
                      ..+.+..+..+. ...+++..    |+.....+    ..++++-++.+++++.|+++||-+..                 
T Consensus       137 ~~~~l~e~~~l~-~~g~~~f~----~~~~~~~~----~~~l~~~~~~~~~~~~~~~~h~Ed~~l~~~~~~~eg~~~~~~~  207 (429)
T PRK09059        137 AGEEMTEFGLLR-AAGAVAFT----DGRRSVAN----AQVMRRALTYARDFDAVIVHETEDPDLGGNGVMNEGLFASWLG  207 (429)
T ss_pred             CCCHHHHHHHHH-HCCEEEEC----CCCCCCCC----HHHHHHHHHHHHHCCCEEEECCCCHHHHHCHHHCCCCCCCCCC
T ss_conf             722345567898-66906750----48635689----9999999999986698479888898888442432542000138


Q ss_pred             -------HHHH---HHHHHHHHCCCCCC-CCEECC-CCHHHHHHHHCCCC-----------------------EEECCCC
Q ss_conf             -------3579---99853100036753-311214-64023443210352-----------------------0202332
Q gi|254780215|r  135 -------DDMA---AILQEEMKKGPFPF-VIHCFS-SSQKLADICLELGG-----------------------YISFTGM  179 (262)
Q Consensus       135 -------~~~l---~iL~~~~~~~~~~~-i~H~Fs-G~~~~~~~~l~~g~-----------------------y~S~~g~  179 (262)
                             .|..   +.+. .......++ +.|.=+ .+.+.++++.+.|.                       ++-++|.
T Consensus       208 ~~~~P~~~E~~av~r~i~-la~~~~~~vhi~HiSs~~~~~~I~~ak~~G~~vt~ev~phhL~l~~~~~~~~~~~~k~~PP  286 (429)
T PRK09059        208 LSGIPREAEVIPLERDLR-LAALTRGRYHAAQISCAESADALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPP  286 (429)
T ss_pred             CCCCCHHHHHHHHHHHHH-HHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCCHHHHCCCCCCCCCCCC
T ss_conf             999998999999999999-9998598589863172677999999997399689996057522885574423672234899


Q ss_pred             CCHHHHHHHHHHHHCCCCCCE-EEEEC-CCCCCCCC-------CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             211333223333210566717-98307-86678777-------6887588244999999999872899899999999999
Q gi|254780215|r  180 ITFPKYDALRAIARGIPMDRV-LVETD-SPYIVPVS-------CQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNA  250 (262)
Q Consensus       180 i~~~~~~~~~e~v~~iPldri-LlETD-sP~l~p~~-------~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~  250 (262)
                      +--++  .-..+++.+-...| .+-|| +|.-....       ..|-..-...++.....+ .-.+++++.+.+.+..|-
T Consensus       287 LR~~~--d~~~L~~~l~~G~Id~i~SDHaP~~~~~K~~~f~~a~~G~~gve~~lp~~~~~v-~~~~isl~~~v~~~s~nP  363 (429)
T PRK09059        287 LRTEE--DRLAMVEAVASGTIDVIVSDHDPQDVDTKRLPFAEAAAGAIGLETLLAAALRLY-HNGEVPLLRLIEALSTRP  363 (429)
T ss_pred             CCCHH--HHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHH
T ss_conf             99989--999999999779970999699999977765986323678560765999999999-859999999999996999


Q ss_pred             HHHHHH
Q ss_conf             998425
Q gi|254780215|r  251 LKLFSK  256 (262)
Q Consensus       251 ~~~f~~  256 (262)
                      -++||-
T Consensus       364 Aki~Gl  369 (429)
T PRK09059        364 AELFGL  369 (429)
T ss_pred             HHHHCC
T ss_conf             999699


No 39 
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.91  E-value=0.0022  Score=43.26  Aligned_cols=134  Identities=17%  Similarity=0.236  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHH-----------HHHHHHCCCCEEECC
Q ss_conf             678999987664204420330002333579998531000367533112146402-----------344321035202023
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQK-----------LADICLELGGYISFT  177 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~-----------~~~~~l~~g~y~S~~  177 (262)
                      .+.+....++|++.+.|+.+|.-......-+++... ..+  .++.|||++...           .+....+.|..+.++
T Consensus       148 ~~~~~~a~~~a~~~~~~~~vH~~~~~~~~~~~~~~~-~~~--~~~~h~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~  224 (338)
T cd01307         148 IKPLELAKKIAKEADLPLMVHIGSPPPILDEVVPLL-RRG--DVLTHCFNGKPNGIVDEEGEVLPLVRRARERGVIFDVG  224 (338)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH-HCC--CEEEEEECCCCCCEECCCHHHHHHHHHHHHCCCEEEEC
T ss_conf             479999999998649957999689826499999986-448--87999744788731367426789999999759689975


Q ss_pred             C-C--CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             3-2--2113332233332105667179830786678777688758824-4999999999872899899999999999998
Q gi|254780215|r  178 G-M--ITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPA-YVVNTAKALAKEKDVSYEDLMEETTKNALKL  253 (262)
Q Consensus       178 g-~--i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~-~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~  253 (262)
                      . .  ..+..+   +..+. ..+---.+.||.+..    +  ..+-|. .+....+.+-. .|++.+++.+.++.|.-++
T Consensus       225 ~~~~~~~~~~~---~~~~~-~g~~~~~i~~d~~~~----~--~~~~~~~~~~~~~~~~~~-~Glsl~~~v~~~T~npA~~  293 (338)
T cd01307         225 HGTASFSFRVA---RAAIA-AGLLPDTISSDIHGR----N--RTNGPVYALATTLSKLLA-LGMPLEEVIEAVTANPARM  293 (338)
T ss_pred             CCCCCCCHHHH---HHHHH-CCCCCCEECCCCCCC----C--CCCCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
T ss_conf             77776687999---99985-599885752676655----6--778540122778999998-4998999999998999998


Q ss_pred             HHH
Q ss_conf             425
Q gi|254780215|r  254 FSK  256 (262)
Q Consensus       254 f~~  256 (262)
                      ||.
T Consensus       294 lGl  296 (338)
T cd01307         294 LGL  296 (338)
T ss_pred             HCC
T ss_conf             199


No 40 
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=97.91  E-value=0.0028  Score=42.56  Aligned_cols=140  Identities=19%  Similarity=0.169  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH-----------HHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf             678999987664204420330002333579998-----------531000367533112146402344321035202023
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAIL-----------QEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT  177 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL-----------~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~  177 (262)
                      .+.+.+.+++|.+.+.|+.+|+-....++..+.           .+.......-.+.||.--+.+.++.+.+.|..++..
T Consensus       193 ~~~~~~~~~~a~~~~~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~H~~~~~~~~~~~l~~~~~~~~~~  272 (411)
T cd01298         193 DELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRPVEYLEELGLLGPDVVLAHCVWLTDEEIELLAETGTGVAHN  272 (411)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEHHCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHCCCEEEEC
T ss_conf             99999999999975994998422459999999999598699999873656876441046732366999998559705546


Q ss_pred             CCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHH
Q ss_conf             32211333---223333210566717983078667877768875882449999999998-----7289989999999999
Q gi|254780215|r  178 GMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAK-----EKDVSYEDLMEETTKN  249 (262)
Q Consensus       178 g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~-----i~~~~~eei~~~~~~N  249 (262)
                      +.-.++-+   ..++++.+.  -=++.+-||+|...+.     . .+....+....+.+     -.+++.+++.+..+.|
T Consensus       273 p~~~~~l~~~~~~~~~l~~~--Gv~v~igTD~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~s~~eal~~~T~n  344 (411)
T cd01298         273 PASNMKLASGIAPVPEMLEA--GVNVGLGTDGAASNNN-----L-DMFEEMRLAALLQKLAHGDPTALPAEEALEMATIG  344 (411)
T ss_pred             CCCCCCCCCCCCHHHHHHHC--CCCEEEECCCCCCCCC-----C-CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             64100134578539999875--9957995688988997-----4-68999999999999752677789999999999999


Q ss_pred             HHHHHHH
Q ss_conf             9998425
Q gi|254780215|r  250 ALKLFSK  256 (262)
Q Consensus       250 ~~~~f~~  256 (262)
                      .-++||.
T Consensus       345 ~A~~lgl  351 (411)
T cd01298         345 GAKALGL  351 (411)
T ss_pred             HHHHHCC
T ss_conf             9999498


No 41 
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=97.90  E-value=0.003  Score=42.31  Aligned_cols=237  Identities=15%  Similarity=0.205  Sum_probs=111.3

Q ss_pred             EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEE-CCCHH--HHHHHHHH----HHHCC-CCCCCCCCCCCCCCCCCCH
Q ss_conf             16861388875652268999999998699899991-67987--78999999----98557-2332112445443344678
Q gi|254780215|r    2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAI-AIKVK--DFVPLIKL----CQDYP-SSIFCSVGTHPCHAHEENE   73 (262)
Q Consensus         2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~-~~~~~--~~~~~~~l----~~~~p-~~i~~a~GiHP~~~~~~~~   73 (262)
                      +||.|+||-.    .+...-...+...|+..++++ .|+|.  +...++++    ++.-+ ..+.+..++.-  ......
T Consensus         6 ~iD~HVHlRe----g~~~~~~~~a~a~G~t~v~~MPNT~Ppi~~~~~~~~y~~~i~~~~~~~~~~~~~~~~l--t~~~~~   79 (335)
T cd01294           6 PDDMHLHLRD----GAMLKLVLPYTARGFSRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMTLYL--TENTTP   79 (335)
T ss_pred             CCEEEEECCC----CHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEE--CCCCCH
T ss_conf             8661443789----6258889999837786999899999998999999999999997388983657888860--589999


Q ss_pred             HHHHHHHHHCCCCCCCEE-----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH---------HHHHHHHH
Q ss_conf             899885310013332100-----4467755332211102467899998766420442033000---------23335799
Q gi|254780215|r   74 VLVDELVCLASHPRVVAI-----GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR---------SADDDMAA  139 (262)
Q Consensus        74 ~~~~~l~~l~~~~~~~aI-----GEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r---------~a~~~~l~  139 (262)
                      +.   +.+......+.||     |-++-+  .+.  . .....+.+-++.+.++++|+++||-         +++...+.
T Consensus        80 ~e---l~~~~~~~~v~giK~y~~gattns--~~G--v-~~~~~~~~~~e~~~~~~~~l~~H~E~~~~~~~~~~~E~~~i~  151 (335)
T cd01294          80 EE---LREAKKKGGIRGVKLYPAGATTNS--QGG--V-TDLEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIP  151 (335)
T ss_pred             HH---HHHHHHCCCCCEEEECCCCCCCCC--CCC--C-CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             99---997665278554662146860046--557--6-558999999999986699677747658875660367887678


Q ss_pred             HHHHHHHC-CCCCCCC-EECC-CCHHHHHHHHCC-C-----CEEEC----------------CCCCCHHH-HHHHHHHHH
Q ss_conf             98531000-3675331-1214-640234432103-5-----20202----------------33221133-322333321
Q gi|254780215|r  140 ILQEEMKK-GPFPFVI-HCFS-SSQKLADICLEL-G-----GYISF----------------TGMITFPK-YDALRAIAR  193 (262)
Q Consensus       140 iL~~~~~~-~~~~~i~-H~Fs-G~~~~~~~~l~~-g-----~y~S~----------------~g~i~~~~-~~~~~e~v~  193 (262)
                      .+.....+ ...++++ |.=| .+.+.+++.-.. .     -++.+                +|.+-.++ .+.+++.++
T Consensus       152 ~~~~l~~~~~~l~ihi~HIST~~~ve~ik~~~~~VtaEVTPHHL~lt~~d~~~~~~~~~~kcnPplR~~~Dr~AL~~al~  231 (335)
T cd01294         152 VLEPLAQRFPKLKIVLEHITTADAVEYVKSCNENVAATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAAT  231 (335)
T ss_pred             HHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCEEEEEHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             78999986888769998438599999999589970488733215751678744485800032999899899999999997


Q ss_pred             CCCCCCEEEEECC-CCCCC-----CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             0566717983078-66787-----77688758824499999999987289989999999999999842
Q gi|254780215|r  194 GIPMDRVLVETDS-PYIVP-----VSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS  255 (262)
Q Consensus       194 ~iPldriLlETDs-P~l~p-----~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~  255 (262)
                      . ..-.+.+=||. |-...     -+.-|-.+.|..++..++..-+  ..+++.+.+-+..|-.+|||
T Consensus       232 ~-G~id~~iaTDHAPH~~~eKe~~~~~AGi~~~~~al~~l~~~f~~--~~~l~~l~~f~s~n~a~~~g  296 (335)
T cd01294         232 S-GHPKFFLGSDSAPHPKSNKESSCGCAGIFSAPIALPYLAEVFEE--HNALDKLEAFASDNGPNFYG  296 (335)
T ss_pred             C-CCCCEEEECCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHC
T ss_conf             4-99848984799998645524889999815788899999999980--48499999998465798809


No 42 
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=97.88  E-value=0.0031  Score=42.26  Aligned_cols=122  Identities=16%  Similarity=0.181  Sum_probs=57.0

Q ss_pred             EEEEECCCCCHH----HHCCHHHHHHHHHHCCCCEEEEECCC------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             168613888756----52268999999998699899991679------87789999999855723321124454433446
Q gi|254780215|r    2 LIDTHCHLLLPD----FDEDRHDVIMRAHQANVLKMIAIAIK------VKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEE   71 (262)
Q Consensus         2 ~iD~H~HL~~~~----~~~d~~~~i~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~   71 (262)
                      |||+|+|+..+.    ..++...-...|...|++.++.....      .+......+.+.   ...+.-+|+|.-.. ..
T Consensus        53 fID~H~H~~~~~~~~~~~e~~~~g~~aa~~gGvTtv~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~-~~  128 (447)
T cd01314          53 GIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKAD---GKSVIDYGFHMIIT-DW  128 (447)
T ss_pred             EEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHC---CCCEEEEEEEEEEE-CC
T ss_conf             898772578887886450228899999996891699516889999878999999999853---78635554689995-48


Q ss_pred             CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH
Q ss_conf             7889988531001333210044677553322111024678999987664204420330002
Q gi|254780215|r   72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS  132 (262)
Q Consensus        72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~  132 (262)
                      .....+++..+... .+.++ .+.+.|.. . .. .-...+.+-++.|++++.++.+|+.+
T Consensus       129 ~~~~~~~~~~l~~~-G~~~~-k~~~~~~~-~-~~-~~~~~l~~~~~~a~~~~~~~~~h~e~  184 (447)
T cd01314         129 TDSVIEELPELVKK-GISSF-KVFMAYKG-L-LM-VDDEELLDVLKRAKELGALVMVHAEN  184 (447)
T ss_pred             CHHHHHHHHHHHHC-CCCEE-EEEECCCC-C-CC-CCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             87799999999983-87867-78740379-6-23-58799999999998639979992588


No 43 
>PRK09237 dihydroorotase; Provisional
Probab=97.88  E-value=0.00071  Score=46.49  Aligned_cols=230  Identities=17%  Similarity=0.256  Sum_probs=106.6

Q ss_pred             EEEEECCCCC--HHHHCCHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHC-CCCCCC-----CCCCCCCC-CCCC
Q ss_conf             1686138887--565226899999999869989999167-987789999999855-723321-----12445443-3446
Q gi|254780215|r    2 LIDTHCHLLL--PDFDEDRHDVIMRAHQANVLKMIAIAI-KVKDFVPLIKLCQDY-PSSIFC-----SVGTHPCH-AHEE   71 (262)
Q Consensus         2 ~iD~H~HL~~--~~~~~d~~~~i~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~-p~~i~~-----a~GiHP~~-~~~~   71 (262)
                      |||+|+|+..  ..+..+.+.   .+...||+.++..+. .+.++.....+.... ...++.     ..|+.+.. ..+.
T Consensus        59 ~ID~HvH~~~~~~~~~~~~~~---~a~~~GvTTvvd~g~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~g~~~~~~~~~~  135 (384)
T PRK09237         59 WIDLHVHVYPGSTIYGDEPDE---VGVKSGVTTVVDAGSAGADNIDDFRELTIEASKTRVLAFLNISRIGLLAQDELANL  135 (384)
T ss_pred             EEEECCCCCCCCCCCCCCHHH---HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCH
T ss_conf             827233888888766768668---78755851786069998553899999985421441787631100046467553433


Q ss_pred             CH-HHHHHHHHHCCCCCCCEECCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH---HHHHHHHHHHHHH
Q ss_conf             78-899885310013332100446775533-221110246789999876642044203300023---3357999853100
Q gi|254780215|r   72 NE-VLVDELVCLASHPRVVAIGETGLDRYH-NAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA---DDDMAAILQEEMK  146 (262)
Q Consensus        72 ~~-~~~~~l~~l~~~~~~~aIGEiGLD~~~-~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a---~~~~l~iL~~~~~  146 (262)
                      .. ............+..+ +|   +--.. .....+.....++...+++.+.++|+.+|+-..   .+++.+.++    
T Consensus       136 ~~~~~~~~~~~~~~~~~~v-~g---~k~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~vH~~~~~~~~~~~~~~~~----  207 (384)
T PRK09237        136 RDIDADAVAEAVEKNPDFI-VG---IKARMSKSVVGDNGITPLELAKEIARENNLPLMVHIGNNPPDLDEVVELLR----  207 (384)
T ss_pred             HHCCHHHHHHHHHHCCCCE-EE---EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH----
T ss_conf             2269899999998671556-76---777521563365544899999999987599679982897233999999874----


Q ss_pred             CCCCCCCCEECCCCH-----------HHHHHHHCCCCEEECC---CCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCC
Q ss_conf             036753311214640-----------2344321035202023---3221133322333321-056671798307866787
Q gi|254780215|r  147 KGPFPFVIHCFSSSQ-----------KLADICLELGGYISFT---GMITFPKYDALRAIAR-GIPMDRVLVETDSPYIVP  211 (262)
Q Consensus       147 ~~~~~~i~H~FsG~~-----------~~~~~~l~~g~y~S~~---g~i~~~~~~~~~e~v~-~iPldriLlETDsP~l~p  211 (262)
                      .+  ..+-|||++..           +.+....+.|..+.++   ....|+.+.   ..++ -+..+  .+.||...   
T Consensus       208 ~g--~~~~H~~~~~~~~~~~~~~~~~~~i~~a~~~G~~~~vghg~~~~~~~~a~---~~~~~G~~p~--~i~tD~~~---  277 (384)
T PRK09237        208 PG--DILTHCFNGKPNGILTEDGELRPSVRRALERGVRLDVGHGTASFSFKVAR---AAIAAGILPD--TISTDIYC---  277 (384)
T ss_pred             CC--CEEEEEECCCCCCEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH---HHHHCCCCCC--EECCCCCC---
T ss_conf             69--88999704778841146512889999999749789982687656899999---9986698663--64156565---


Q ss_pred             CCCCCCCCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             7768875882-44999999999872899899999999999998425
Q gi|254780215|r  212 VSCQGKRNEP-AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       212 ~~~r~~~n~P-~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                         +...+.| ..+..+...+-. .|++++++.+.++.|.-+.||.
T Consensus       278 ---~~~~~g~~~~l~~~~~~~~~-~Glsl~eav~~~T~nPA~~lGL  319 (384)
T PRK09237        278 ---RNRINGPVYSLATTMSKFLA-LGMPLEEVIAAVTKNAADALKL  319 (384)
T ss_pred             ---CCCCCCCEEHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCC
T ss_conf             ---56678750019999999998-3999999999997899997199


No 44 
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=97.87  E-value=0.0026  Score=42.79  Aligned_cols=137  Identities=20%  Similarity=0.179  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHH-----------HHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf             67899998766420442033000233357999-----------8531000367533112146402344321035202023
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAI-----------LQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT  177 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~i-----------L~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~  177 (262)
                      .+.+.+..++|.+.+.|+.+|+-....++..+           |.+....++.....||..-+.+.++.+.+.|..++.+
T Consensus       191 ~e~l~~~~~~a~~~~~~~~~H~~e~~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~aH~~~l~~~di~~la~~g~~v~~~  270 (432)
T PRK06038        191 EEFLSKVKELANKDGLGIHIHVLETEAELNAMKERYGKCSVEYLDDIGFLGPDVLAAHCVWLSDGDIEILAERGVNVSHN  270 (432)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEECEEECCHHHHHHHHHCCCEEEEC
T ss_conf             99999999999866990789732418899999997099889999862787865102040507879999998539879988


Q ss_pred             CCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH---HHHHHHHHHH-----CCCHHHHHHHH
Q ss_conf             32211333---2233332105667179830786678777688758824499---9999999872-----89989999999
Q gi|254780215|r  178 GMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVV---NTAKALAKEK-----DVSYEDLMEET  246 (262)
Q Consensus       178 g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~---~~~~~iA~i~-----~~~~eei~~~~  246 (262)
                      |...+.-.   ..++++++. . =++-+-||++-.         |...++.   +.+..+.+..     .++.+++.+..
T Consensus       271 P~sn~~l~~g~~p~~~~~~~-G-v~v~lgtDg~~~---------~~~~d~~~em~~a~~~~~~~~~~~~~l~~~~~l~~a  339 (432)
T PRK06038        271 PSSNMKLASGIAPVYKMLEK-G-VNVSLGTDGCAS---------NNNLDMFEEMKTAALLQKVNTMNPTALPARQVLEMA  339 (432)
T ss_pred             CHHHHCCCCCCCCHHHHHHC-C-CCEEEECCCCCC---------CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             01220057788679999868-9-978884687666---------885559999999999998845898768999999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999998425
Q gi|254780215|r  247 TKNALKLFSK  256 (262)
Q Consensus       247 ~~N~~~~f~~  256 (262)
                      +.|.-|.+|.
T Consensus       340 T~ngA~aLg~  349 (432)
T PRK06038        340 TVNGAKALGI  349 (432)
T ss_pred             HHHHHHHHCC
T ss_conf             9999999688


No 45 
>PRK08418 chlorohydrolase; Provisional
Probab=97.85  E-value=0.0015  Score=44.43  Aligned_cols=212  Identities=14%  Similarity=0.145  Sum_probs=106.7

Q ss_pred             HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHC--CCCCCCEECCCCCC
Q ss_conf             99998699899991679877899999998557233---21124454433446788998853100--13332100446775
Q gi|254780215|r   23 MRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSI---FCSVGTHPCHAHEENEVLVDELVCLA--SHPRVVAIGETGLD   97 (262)
Q Consensus        23 ~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i---~~a~GiHP~~~~~~~~~~~~~l~~l~--~~~~~~aIGEiGLD   97 (262)
                      .++.++|+..+..++....+    .+.+.+-+-..   ...+|-.|..+.+......+.+....  ..+++.  .-+++.
T Consensus       109 ~eml~sGtTt~~~~~~~~~~----~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h  182 (407)
T PRK08418        109 NKMLKSGVGTIGAISSFGID----LEICAKSPLRVVFFNEILGSNASMVDELLADFLARFKNSKKFKSDKFI--PAIAIH  182 (407)
T ss_pred             HHHHHCCCCCCCHHHCCHHH----HHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE--EEEECC
T ss_conf             99997298661403235878----999996499399986240788567778899999999987524688457--998678


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHH----------HHHHHHHHHH---------------CCCCCC
Q ss_conf             533221110246789999876642044203300023335----------7999853100---------------036753
Q gi|254780215|r   98 RYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDD----------MAAILQEEMK---------------KGPFPF  152 (262)
Q Consensus        98 ~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~----------~l~iL~~~~~---------------~~~~~~  152 (262)
                           .+.-...+.+++-.++|++++.|+.+|.-....|          +.+.+.++..               .+....
T Consensus       183 -----~~~t~s~~~l~~~~~~A~~~~~~i~~H~~Es~~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~i  257 (407)
T PRK08418        183 -----SPYSVHPILAKKALDLAKKSNLLVSTHFLESKAEREWLEESKGWFKKFFERFLKHPKPLYTPKDFLDLFKGLRTL  257 (407)
T ss_pred             -----CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEE
T ss_conf             -----888778999999999986369859999789889999999723707678987356864225767788614678839


Q ss_pred             CCEECCCCHHHHHHHHCCCCEEECCCCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             311214640234432103520202332211333---22333321056671798307866787776887588244999999
Q gi|254780215|r  153 VIHCFSSSQKLADICLELGGYISFTGMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAK  229 (262)
Q Consensus       153 i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~  229 (262)
                      ..||---+.+.++.+.+.|..++..|.....-+   ..++++++.  -=++-|=||++-.         |...++....+
T Consensus       258 ~aH~v~l~d~ei~lla~~g~~VahcP~SN~~lg~G~~pv~~~~~~--Gv~V~LGTDg~~s---------n~~~dm~~emr  326 (407)
T PRK08418        258 FTHCVYASEEELEKIKSLGHSIIHCPFSNRLLSNKALDLEKIKKA--GIPLSIATDGLSS---------NISLSLLDELR  326 (407)
T ss_pred             EEEECCCCHHHHHHHHHCCCEEEECHHHHHHCCCCCCCHHHHHHC--CCCEEEECCCCCC---------CCCCCHHHHHH
T ss_conf             997477899999999971996999878898626899889999868--9968996899877---------89738999999


Q ss_pred             HHHH-HHCCC----HHHHHHHHHHHHHHHHHH
Q ss_conf             9998-72899----899999999999998425
Q gi|254780215|r  230 ALAK-EKDVS----YEDLMEETTKNALKLFSK  256 (262)
Q Consensus       230 ~iA~-i~~~~----~eei~~~~~~N~~~~f~~  256 (262)
                      ...- -++.+    .+++.+-.+.|.-|.+|.
T Consensus       327 ~a~~~~~~~~~~~~a~~~l~maT~~GA~aLgl  358 (407)
T PRK08418        327 AALLTHKNMPLLELAKILLLSATKYGAKALGL  358 (407)
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             99996058998741999999999999999689


No 46 
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=97.84  E-value=0.0021  Score=43.38  Aligned_cols=229  Identities=17%  Similarity=0.195  Sum_probs=143.1

Q ss_pred             EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEE------CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------
Q ss_conf             16861388875652268999999998699899991------679877899999998557233211244544334------
Q gi|254780215|r    2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAI------AIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAH------   69 (262)
Q Consensus         2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~------~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~------   69 (262)
                      |||+|.|+.+.-+  ...+...-....|++.+++=      -...+.....++-+++.|-.+|..+   |..++      
T Consensus        79 fID~H~HIESSm~--tP~~FA~~Vlp~GtTtvV~DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~~~~---pScVPat~~Et  153 (584)
T COG1001          79 FIDAHLHIESSML--TPSEFARAVLPHGTTTVVSDPHEIANVLGEDGIRFMLDEAKETPLKVYVML---PSCVPATPFET  153 (584)
T ss_pred             EECCCEECCCCCC--CHHHHHHHHHCCCCEEEEECCHHHHHHCCHHHHHHHHHHHHHCCEEEEEEC---CCCCCCCCCCC
T ss_conf             1103210100366--899999886517855896172898761368899999987752976899966---66766775346


Q ss_pred             CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC
Q ss_conf             46788998853100133321004467755332211102467899998766420442033000233357999853100036
Q gi|254780215|r   70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGP  149 (262)
Q Consensus        70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~  149 (262)
                      ....-..+.+++++..|+++++||+= || .  .-.+...+++ .-|+.|++.+|||-=|+.+.-+..+.-   |...+.
T Consensus       154 ~Ga~l~a~~i~e~~~~p~Vigl~E~M-n~-p--gVi~~D~~~l-~kl~a~~~~~k~VdGHapgl~g~~Ln~---Y~aaGi  225 (584)
T COG1001         154 SGAELTAEDIKELLEHPEVIGLGEMM-NF-P--GVIEGDPDML-AKLEAARKAGKPVDGHAPGLSGKELNA---YIAAGI  225 (584)
T ss_pred             CCCEECHHHHHHHHHCCCCCCHHHHC-CC-C--HHCCCCHHHH-HHHHHHHHCCCEECCCCCCCCHHHHHH---HHHCCC
T ss_conf             78460399999986287714235532-77-1--0215988899-999999874985346489998078888---985388


Q ss_pred             CCCCCEECCCCHHHHHHHHCCCCEEECC-CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCCCCHHHHHH
Q ss_conf             7533112146402344321035202023-32211333223333210566717983078667877--76887588244999
Q gi|254780215|r  150 FPFVIHCFSSSQKLADICLELGGYISFT-GMITFPKYDALRAIARGIPMDRVLVETDSPYIVPV--SCQGKRNEPAYVVN  226 (262)
Q Consensus       150 ~~~i~H~FsG~~~~~~~~l~~g~y~S~~-g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~--~~r~~~n~P~~i~~  226 (262)
                      .  --|=. -+.+.+.+-+++|+|+.+- |.+.. .-..+-.++...+..|+++=||--  .|.  -..      ..+-.
T Consensus       226 ~--tDHE~-~t~EEa~~klr~Gm~i~iReGS~a~-dl~~l~~~i~e~~~~~~~lcTDD~--~p~dl~~e------Ghld~  293 (584)
T COG1001         226 S--TDHES-TTAEEALEKLRLGMKIMIREGSAAK-DLAALLPAITELGSRRVMLCTDDR--HPDDLLEE------GHLDR  293 (584)
T ss_pred             C--CCCCC-CCHHHHHHHHHCCCEEEEECCCHHH-HHHHHHHHHHHCCCCEEEEECCCC--CHHHHHHC------CCHHH
T ss_conf             8--67654-9999999999578689998574155-099999997614886189987999--85676652------77999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999872899899999999999998425
Q gi|254780215|r  227 TAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       227 ~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      +++..=+ .|++.....+..+-|.-+-||.
T Consensus       294 ~vR~Ai~-~Gv~p~~a~qmAtiN~A~~~gl  322 (584)
T COG1001         294 LVRRAIE-EGVDPLDAYQMATINPAEHYGL  322 (584)
T ss_pred             HHHHHHH-CCCCHHHHHHHHHCCHHHHCCC
T ss_conf             9999998-2999899998875079987197


No 47 
>PRK09356 imidazolonepropionase; Validated
Probab=97.84  E-value=0.00086  Score=45.94  Aligned_cols=131  Identities=15%  Similarity=0.100  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHCCCCCEEECHHHHH-HHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHH-HHH---
Q ss_conf             999987664204420330002333-579998531000367533112146402344321035202023322113-332---
Q gi|254780215|r  112 FLRHIEASRITGIPLVIHSRSADD-DMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFP-KYD---  186 (262)
Q Consensus       112 F~~ql~lA~e~~~pv~iH~r~a~~-~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~-~~~---  186 (262)
                      .++.++.|.++++|+.+|+..... .-.++..++    ....+-||---+.+.++.+.+.|...+..|...+. +..   
T Consensus       223 ~~~~~~~a~~~g~~v~~Ha~~~~~~~~~~l~~~~----g~~~~~H~~~~~~e~i~~la~~g~~~~~~P~s~~~l~~~~~~  298 (401)
T PRK09356        223 SERVFEAAKALGLPVKLHAEQLSNLGGAELAARY----GALSADHLEYLDEAGIAAMAEAGTVAVLLPGAFYFLRETQYP  298 (401)
T ss_pred             HHHHHHHHHHCCCCEEEHHHHHCCCCHHHHHHHH----CCCCHHHHHHCCHHHHHHHHHCCCEEEECCCHHHHHCCCCCC
T ss_conf             9999999998699727717644445479999980----997415887618999999986497079885047674577664


Q ss_pred             HHHHHHHCCCCCCEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             23333210566717983078-667877768875882449999999998728998999999999999984256
Q gi|254780215|r  187 ALRAIARGIPMDRVLVETDS-PYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKI  257 (262)
Q Consensus       187 ~~~e~v~~iPldriLlETDs-P~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~  257 (262)
                      .++++.+.  -=++-+=||+ |...|         -.++.......+...+++.+++.+..+.|.-|.+|.-
T Consensus       299 ~~~~l~~a--Gv~v~lGTD~~pg~~~---------~~~~~~~~~~a~~~~glt~~eaL~~aT~~~Aralg~~  359 (401)
T PRK09356        299 PARLLRDA--GVPVALATDFNPGTSP---------TTSLLLMMNMACTLFRLTPEEALAGVTRNAARALGRQ  359 (401)
T ss_pred             HHHHHHHC--CCCEEEEECCCCCCCC---------CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             49999978--9965997469876683---------2119999999999749999999999999999997899


No 48 
>PRK08323 dihydropyrimidinase; Validated
Probab=97.79  E-value=0.0046  Score=41.11  Aligned_cols=33  Identities=15%  Similarity=0.143  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999872899899999999999998425
Q gi|254780215|r  224 VVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       224 i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      ++......-.-..++++++.+.+..|--++||-
T Consensus       347 l~~l~~~~V~~g~lsl~~~v~~~s~nPA~~lGL  379 (463)
T PRK08323        347 MPLLFSEGVMTGRITLNRFVELTSTNPAKIFGL  379 (463)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             999999999839999999999986629998397


No 49 
>PRK06380 metal-dependent hydrolase; Provisional
Probab=97.78  E-value=0.0046  Score=41.08  Aligned_cols=137  Identities=13%  Similarity=0.148  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHH-----------HHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf             678999987664204420330002333579998531-----------000367533112146402344321035202023
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEE-----------MKKGPFPFVIHCFSSSQKLADICLELGGYISFT  177 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~-----------~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~  177 (262)
                      .+.+++-.++|++++.|+-+|.-....|+....+.+           ..-++.-...||---+.+.++.+.+.|..++++
T Consensus       185 ~e~~~~~~~lA~~~~~~~~~H~~E~~~e~~~~~~~~G~~pv~~l~~~glL~~~~~~~H~~~~~~~e~~~la~~g~~v~~~  264 (418)
T PRK06380        185 DETYMRALDLAEKYNTIMHMHLSETRKEVYDTVKKYGERPIEHLNKIGFLSDRVIAAHCVWATYHEIKLLSKNGVNVSWN  264 (418)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCEEEC
T ss_conf             99999999999972983786400206789999999599889999854888887166555328989999999759836878


Q ss_pred             CCCCHHHHH----HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---H-----CCCHHHHHHH
Q ss_conf             322113332----233332105667179830786678777688758824499999999987---2-----8998999999
Q gi|254780215|r  178 GMITFPKYD----ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKE---K-----DVSYEDLMEE  245 (262)
Q Consensus       178 g~i~~~~~~----~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i---~-----~~~~eei~~~  245 (262)
                      |...++-+.    .++++++. . =++-+=||++-         .|...++....+..+-.   .     .++.+++.+-
T Consensus       265 P~sn~~l~~gg~~pi~~~~~~-G-v~v~lGTD~~~---------s~~~~dm~~~mr~~~l~~~~~~~d~~~~~~~~~l~m  333 (418)
T PRK06380        265 SVSNFKLATGGNPPIPEMLNN-N-VNVTIGTDSNG---------SNNSLDMFQAMKFSALSVKNERWDASIIKSQDILDM  333 (418)
T ss_pred             CHHHHHCCCCCCCCHHHHHHC-C-CCEEEECCCCC---------CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             346765057888769999976-9-90899168655---------565189999999999998763479876799999999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999998425
Q gi|254780215|r  246 TTKNALKLFSK  256 (262)
Q Consensus       246 ~~~N~~~~f~~  256 (262)
                      .+.|.-|.++.
T Consensus       334 AT~~gAkaLg~  344 (418)
T PRK06380        334 ATLNAASALNL  344 (418)
T ss_pred             HHHHHHHHHCC
T ss_conf             99999998499


No 50 
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=97.75  E-value=0.0036  Score=41.83  Aligned_cols=140  Identities=13%  Similarity=0.113  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHHHHHHHH-----------HHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf             678999987664204420330002333579-----------998531000367533112146402344321035202023
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRSADDDMA-----------AILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT  177 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l-----------~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~  177 (262)
                      .+.+++-.++|++++.|+.+|.-....++-           +.|.+....++.-.+.||.--+.+.++.+.+.|.+++.+
T Consensus       198 ~e~l~~~~~~A~~~~~~~~~H~~e~~~e~~~~~~~~g~~~i~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~  277 (445)
T PRK07228        198 EELLREVRDLAREYGVRIHTHASENQGEIELVEQETGMRNIHYLDHVGLTGEDLILAHCIWLDEEERDILAETGTHVTHC  277 (445)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHCCEEEEC
T ss_conf             99999999999974982898545874699999998599889999854777898513012448889999999839837978


Q ss_pred             CCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHH
Q ss_conf             32211333---22333321056671798307866787776887588244999999999872-----89989999999999
Q gi|254780215|r  178 GMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEK-----DVSYEDLMEETTKN  249 (262)
Q Consensus       178 g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~-----~~~~eei~~~~~~N  249 (262)
                      |...+.-.   ..++++++.  --++-+=||++.....      ..+-.-.+.+..+.+..     .++.+++.+..+.|
T Consensus       278 P~sn~~l~~g~~~~~~l~~~--Gv~v~lGTDg~~~n~~------~d~~~emr~a~l~~~~~~~~~~~l~~~~~l~~aTi~  349 (445)
T PRK07228        278 PSSNLKLASGIAPIPDLLER--GINVSLGADGAPCNNN------LDAFTEMRQAALIQKPDLLGPTAMPARQVFEMATLG  349 (445)
T ss_pred             CHHHHHCCCCCCCHHHHHHC--CCEEEEECCCCCCCCC------HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             57765246788579999976--9908996788755786------249999999999999864598768999999998688


Q ss_pred             HHHHHHH
Q ss_conf             9998425
Q gi|254780215|r  250 ALKLFSK  256 (262)
Q Consensus       250 ~~~~f~~  256 (262)
                      .-+.+|.
T Consensus       350 gA~alG~  356 (445)
T PRK07228        350 GAKAMGM  356 (445)
T ss_pred             HHHHCCC
T ss_conf             9998198


No 51 
>PRK08044 allantoinase; Provisional
Probab=97.75  E-value=0.0053  Score=40.70  Aligned_cols=240  Identities=15%  Similarity=0.134  Sum_probs=105.2

Q ss_pred             EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEEC--CCH-----HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             168613888756--522689999999986998999916--798-----77899999998557233211244544334467
Q gi|254780215|r    2 LIDTHCHLLLPD--FDEDRHDVIMRAHQANVLKMIAIA--IKV-----KDFVPLIKLCQDYPSSIFCSVGTHPCHAHEEN   72 (262)
Q Consensus         2 ~iD~H~HL~~~~--~~~d~~~~i~~a~~~gv~~~i~~~--~~~-----~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~   72 (262)
                      +||.|+|+..+.  ..++++.--..|...||+.++..-  +.+     +......+.++.   ..+.-++.|.-.. ...
T Consensus        55 ~ID~HvH~~~pg~~~~e~~~t~s~AA~~GGvTtv~~mP~n~~p~~~~~~~~~~~~~~~~~---~~~vd~~~~~g~~-~~~  130 (449)
T PRK08044         55 MVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRESIELKFDAAKG---KLTIDAAQLGGLV-SYN  130 (449)
T ss_pred             EEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHC---CCCCCEEEEECCC-CCC
T ss_conf             897750569998643104888889997468557997878999875529999999998636---7543289981204-787


Q ss_pred             HHHHHHHHHHCCCCCCCEE-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-----------
Q ss_conf             8899885310013332100-------4467755332211102467899998766420442033000233-----------
Q gi|254780215|r   73 EVLVDELVCLASHPRVVAI-------GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD-----------  134 (262)
Q Consensus        73 ~~~~~~l~~l~~~~~~~aI-------GEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~-----------  134 (262)
                      .+.+.++.+.    .++++       |.-|++-  +.  ...+-..+.+-++-+.+++.|+++||.+..           
T Consensus       131 ~~~i~~l~~~----g~~~~k~f~~~~g~~~i~~--~~--~~~~d~~l~~~~~~~~~~g~~v~~H~E~~~i~~~~~~~~~~  202 (449)
T PRK08044        131 LDRLHELDEV----GVVGFKCFVATCGDRGIDN--DF--RDVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEAKR  202 (449)
T ss_pred             HHHHHHHHHC----CCCEEEEEEECCCCCCCCC--CC--CCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             7889988762----6652567630357632247--76--66798999999999985399699979987999999999987


Q ss_pred             ----------------HHHH---HHHHHHHHCCCCCCC-CEECC-CCHHHHHHHHCCC----------------------
Q ss_conf             ----------------3579---998531000367533-11214-6402344321035----------------------
Q gi|254780215|r  135 ----------------DDMA---AILQEEMKKGPFPFV-IHCFS-SSQKLADICLELG----------------------  171 (262)
Q Consensus       135 ----------------~~~l---~iL~~~~~~~~~~~i-~H~Fs-G~~~~~~~~l~~g----------------------  171 (262)
                                      .|+.   +++ ........+++ .|-=+ .+.+.++++.+.|                      
T Consensus       203 ~g~~~~~~~~~~rP~~aE~~av~r~~-~la~~~g~~~hi~HiSs~~~~~~I~~ak~~G~~vt~Ev~ph~L~l~~~~~~~~  281 (449)
T PRK08044        203 EGRVTAHDYVASRPVFTEVEAIRRVL-YLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEI  281 (449)
T ss_pred             CCCCCHHHCCCCCCHHHHHHHHHHHH-HHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEECHHHHCCCHHHHHHC
T ss_conf             69965334447798899999999999-98887198388445354778999999997699840120355561899898426


Q ss_pred             -CEEECCCCCCHHHHHHHHHHHHCCCCCCE-EEEEC-CCCCCCCC---C----CCCCCCHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             -20202332211333223333210566717-98307-86678777---6----887588244999999999872899899
Q gi|254780215|r  172 -GYISFTGMITFPKYDALRAIARGIPMDRV-LVETD-SPYIVPVS---C----QGKRNEPAYVVNTAKALAKEKDVSYED  241 (262)
Q Consensus       172 -~y~S~~g~i~~~~~~~~~e~v~~iPldri-LlETD-sP~l~p~~---~----r~~~n~P~~i~~~~~~iA~i~~~~~ee  241 (262)
                       .++=++|.+--+  .....+++.+-...| .+=|| +|.-....   +    .|-..--.+++.....+-.-++++++.
T Consensus       282 ~~~~k~~PPLR~~--~d~~aL~~al~~G~Id~i~SDHaP~~~~~K~~~~~~a~~Gi~g~et~l~ll~~~~v~~~~lsl~~  359 (449)
T PRK08044        282 GTLAKCSPPIRDQ--ENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPM  359 (449)
T ss_pred             CCEEEECCCCCCH--HHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             9548888999997--89999999985799509985999999789188766488986515447999999999749989999


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999998425
Q gi|254780215|r  242 LMEETTKNALKLFSK  256 (262)
Q Consensus       242 i~~~~~~N~~~~f~~  256 (262)
                      +.+.+..|--++||-
T Consensus       360 ~v~~~s~nPAki~gl  374 (449)
T PRK08044        360 FGKLMATNAADIFGL  374 (449)
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999981639998598


No 52 
>PRK08204 hypothetical protein; Provisional
Probab=97.74  E-value=0.004  Score=41.51  Aligned_cols=139  Identities=16%  Similarity=0.081  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECH----HHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH
Q ss_conf             67899998766420442033000----23335799985310003675331121464023443210352020233221133
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSR----SADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPK  184 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r----~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~  184 (262)
                      .+.+...+++|++++.|+.+|.-    ......++.+.+...-++.-.+.||---+.+.++.+.+.|..++++|......
T Consensus       202 ~e~~~~~~~~a~~~g~~~~~H~~~~~~~~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~e~~~la~~g~~v~~~p~s~~~~  281 (451)
T PRK08204        202 WEVVRADFRLARELGLPASMHIGFGPWGATPRGVEQLHDAGLLGPDLNIVHCNAISDDELRLLADSGASFSVTPEIEMMM  281 (451)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEECCHHHHHH
T ss_conf             99999999999967994888223664456886899999769878990899512688899999887399679674057652


Q ss_pred             H---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH----------------HHHHCCCHHHHHHH
Q ss_conf             3---2233332105667179830786678777688758824499999999----------------98728998999999
Q gi|254780215|r  185 Y---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKAL----------------AKEKDVSYEDLMEE  245 (262)
Q Consensus       185 ~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~i----------------A~i~~~~~eei~~~  245 (262)
                      .   ...+++++.  -=++-+-||++-..+.       ....-.+.+-..                ..-.+++.+++.+.
T Consensus       282 ~~g~~~~~~~~~~--Gv~v~lgtD~~~~~~~-------d~~~~~r~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~eal~~  352 (451)
T PRK08204        282 GHGYPVTGRLLKH--GVRPSLGVDVVTSTGG-------DMFTQMRFALQAERALDNAELLREGIMPPPTLTLSARQVLEW  352 (451)
T ss_pred             CCCCCCHHHHHHC--CCCEEEECCCCCCCCC-------CHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf             4798609999974--9966664675566783-------799999999986666501145542022255568899999999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999998425
Q gi|254780215|r  246 TTKNALKLFSK  256 (262)
Q Consensus       246 ~~~N~~~~f~~  256 (262)
                      .+.|.-+.+|.
T Consensus       353 aT~~gA~alG~  363 (451)
T PRK08204        353 ATIEGARALGL  363 (451)
T ss_pred             HHHHHHHHCCC
T ss_conf             99999998099


No 53 
>PRK08392 hypothetical protein; Provisional
Probab=97.73  E-value=0.00082  Score=46.07  Aligned_cols=150  Identities=13%  Similarity=0.116  Sum_probs=83.3

Q ss_pred             EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECC----CHHHHHH----HHHHHHHCC-------------------C
Q ss_conf             686138887565226899999999869989999167----9877899----999998557-------------------2
Q gi|254780215|r    3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAI----KVKDFVP----LIKLCQDYP-------------------S   55 (262)
Q Consensus         3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~----~~~~~~~----~~~l~~~~p-------------------~   55 (262)
                      ||.|+|-....-...+++.++.|.+.|.+.+.++-.    ......+    ...+.+..+                   +
T Consensus         1 iDlHtHT~~Sdg~~ti~E~~~aA~~~Gl~~i~ITDH~~~~~~~~~~~~~~~i~~~~~~~~i~iL~GiE~nIl~g~lD~~~   80 (215)
T PRK08392          1 MDLHTHTVYSDGIGSVRDNVAWAEKRGLKLLGISDHIHYFTPSKFNRYINEIRRWGEESEIVVLAGIEANITENGPDITD   80 (215)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCH
T ss_conf             96655878446778799999999987994899806999888289999999999854406977999776350489878679


Q ss_pred             C-----CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf             3-----32112445443344678899885310013332100446775533221110246789999876642044203300
Q gi|254780215|r   56 S-----IFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS  130 (262)
Q Consensus        56 ~-----i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~  130 (262)
                      .     =|.-.|+|.|+..+..+...+.+...+.++.+-.||-.|..+-....+.   ..-+++.+++|++.|..+-|-+
T Consensus        81 ~~l~~lD~vIasvH~~~~~~~~e~~~~~~~~A~~n~~v~iigHp~~~~~~~~~p~---~~~~~~v~~~a~~~~~~lEIns  157 (215)
T PRK08392         81 DFAKKLDYVIASVHEWFGRDTPHEYIELVKLALMDENVDIIGHFGNSFPWIGYPT---EEEIREVLELAEAYGKAFEISS  157 (215)
T ss_pred             HHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCH---HHHHHHHHHHHHHHCCEEECCC
T ss_conf             9998699799998737889988999999999996799889958998767777755---8899999999999698774159


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCC
Q ss_conf             0233357999853100036753311214640234432103520202332
Q gi|254780215|r  131 RSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGM  179 (262)
Q Consensus       131 r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~  179 (262)
                      +...                        .+.+.++.+.+.|..|++|..
T Consensus       158 ~~~~------------------------~~~~~~~~a~~~Gv~i~i~SD  182 (215)
T PRK08392        158 RYKV------------------------PDLEFIRECIKRGIKLTFASD  182 (215)
T ss_pred             CCCC------------------------CCHHHHHHHHHCCCEEEEECC
T ss_conf             8889------------------------989999999984996999789


No 54 
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=97.68  E-value=0.0061  Score=40.29  Aligned_cols=137  Identities=16%  Similarity=0.117  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHH-----------HHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf             67899998766420442033000233357999-----------8531000367533112146402344321035202023
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAI-----------LQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT  177 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~i-----------L~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~  177 (262)
                      .+.|++..++|++++.|+.+|+-....+.-..           |.+...-++.-...||--=+.+.++.+.+.|..++.+
T Consensus       202 ~~~l~~~~~~A~~~~~~v~~H~~E~~~e~~~~~~~~G~~pv~~l~~~G~L~~~~~~~H~~~l~~~di~~la~~g~~v~~~  281 (444)
T PRK09045        202 DENLERIRVLAEQLDAPIHIHLHETAQEIEDSLKQHGQRPLARLDRLGLLGPRLIAVHMTQLTDAEIALLAETGCSVVHC  281 (444)
T ss_pred             HHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCEEEEC
T ss_conf             89999999999866991886013458899999988499889999972689976325544741847999999809979988


Q ss_pred             CCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH---HHHHHHHH-----HCCCHHHHHHHH
Q ss_conf             322113332---2333321056671798307866787776887588244999---99999987-----289989999999
Q gi|254780215|r  178 GMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVN---TAKALAKE-----KDVSYEDLMEET  246 (262)
Q Consensus       178 g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~---~~~~iA~i-----~~~~~eei~~~~  246 (262)
                      |.....-..   .++++.+ -. =++-+=||++..         |...++..   ++..+++.     ..++..++.+..
T Consensus       282 P~sn~~l~~g~~p~~~l~~-~G-v~v~lGtDg~~s---------n~~~d~~~emr~a~~~~r~~~~~~~~l~~~e~l~~a  350 (444)
T PRK09045        282 PESNLKLASGFCPVAKLWR-AG-VNVAIGTDGAAS---------NNDLDLFGEMRTAALLAKAVAGDATALPAHTALRMA  350 (444)
T ss_pred             CCCCHHCCCCCCCHHHHHH-CC-CCEEEECCCCCC---------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             2110003678888999987-79-937986798867---------885119999999999999864899889999999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999998425
Q gi|254780215|r  247 TKNALKLFSK  256 (262)
Q Consensus       247 ~~N~~~~f~~  256 (262)
                      +.|.-+..|.
T Consensus       351 T~~gA~aLg~  360 (444)
T PRK09045        351 TLNGARALGL  360 (444)
T ss_pred             HHHHHHHHCC
T ss_conf             9999999589


No 55 
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=97.67  E-value=0.0067  Score=40.00  Aligned_cols=217  Identities=14%  Similarity=0.112  Sum_probs=95.5

Q ss_pred             HHHHHHHCCCCEEEE-----ECCCHHHHHHHHHHHHHCCCCCCC---CCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCEE
Q ss_conf             999999869989999-----167987789999999855723321---12445443344678899885310013-332100
Q gi|254780215|r   21 VIMRAHQANVLKMIA-----IAIKVKDFVPLIKLCQDYPSSIFC---SVGTHPCHAHEENEVLVDELVCLASH-PRVVAI   91 (262)
Q Consensus        21 ~i~~a~~~gv~~~i~-----~~~~~~~~~~~~~l~~~~p~~i~~---a~GiHP~~~~~~~~~~~~~l~~l~~~-~~~~aI   91 (262)
                      .+.++...|+..+..     .......++...++.+.+.+.+-.   ++.-++.+..   ....+.+++.... ..+  +
T Consensus       101 ~~~~~l~~G~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~g~~~--~  175 (398)
T cd01293         101 ALELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGLLST---PGGEELMREALKMGADV--V  175 (398)
T ss_pred             HHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC---HHHHHHHHHHHHHCCCE--E
T ss_conf             999999659618876433145221569999999999846443401364477312466---41899999999824600--6


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-------HHHHHHHHHHHHCCCCCCCCEECCCC----
Q ss_conf             4467755332211102467899998766420442033000233-------35799985310003675331121464----
Q gi|254780215|r   92 GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD-------DDMAAILQEEMKKGPFPFVIHCFSSS----  160 (262)
Q Consensus        92 GEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~-------~~~l~iL~~~~~~~~~~~i~H~FsG~----  160 (262)
                      |  |+++......   -.+.+++-+++|+++++|+.+|+-...       +.+.+.+.+....+ .-.+-||+.-+    
T Consensus       176 g--~~~~~~~~~~---~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~g~~~-~~~~~H~~~l~~~~~  249 (398)
T cd01293         176 G--GIPPAEIDED---GEESLDTLFELAQEHGLDIDLHLDETDDPGSRTLEELAEEAERRGMQG-RVTCSHATALGSLPE  249 (398)
T ss_pred             E--ECCCCCCCCC---HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCC-CEEHHHHHHCCCCCH
T ss_conf             4--1266567887---799999999999984998799545644403669999999999829976-455654321537998


Q ss_pred             ---HHHHHHHHCCCCEEECCCCCCHHHHH------------HHHHHHHCCCCCCEEEEECCCCCCC-CCCCCCCCCHHHH
Q ss_conf             ---02344321035202023322113332------------2333321056671798307866787-7768875882449
Q gi|254780215|r  161 ---QKLADICLELGGYISFTGMITFPKYD------------ALRAIARGIPMDRVLVETDSPYIVP-VSCQGKRNEPAYV  224 (262)
Q Consensus       161 ---~~~~~~~l~~g~y~S~~g~i~~~~~~------------~~~e~v~~iPldriLlETDsP~l~p-~~~r~~~n~P~~i  224 (262)
                         .+.++.+.+.|..++..|........            .++++.+.  -=++.+=||+.. .| .|.    +.+ ++
T Consensus       250 ~~~~~~~~~la~~gv~v~~~p~~~~~l~~~~~~~~~~~g~~~v~~l~~a--Gv~v~lGtD~~~-~~~~p~----g~~-~~  321 (398)
T cd01293         250 AEVSRLADLLAEAGISVVSLPPINLYLQGREDTTPKRRGVTPVKELRAA--GVNVALGSDNVR-DPWYPF----GSG-DM  321 (398)
T ss_pred             HHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCCCCCCCCCCHHHHHHC--CCEEEECCCCCC-CCCCCC----CCH-HH
T ss_conf             8999999999873987998750456534432134444588889999977--993996588887-888888----865-49


Q ss_pred             HHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHHH
Q ss_conf             99999999872899----899999999999998425
Q gi|254780215|r  225 VNTAKALAKEKDVS----YEDLMEETTKNALKLFSK  256 (262)
Q Consensus       225 ~~~~~~iA~i~~~~----~eei~~~~~~N~~~~f~~  256 (262)
                      .......+...+++    ..+..+..+.|.-+.+|.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lGl  357 (398)
T cd01293         322 LEVANLAAHIAQLGTPEDLALALDLITGNAARALGL  357 (398)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999999958997778999999993999997199


No 56 
>PRK07627 dihydroorotase; Provisional
Probab=97.65  E-value=0.0072  Score=39.82  Aligned_cols=237  Identities=14%  Similarity=0.124  Sum_probs=103.8

Q ss_pred             EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEEC-CC-----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CC
Q ss_conf             168613888756--522689999999986998999916-79-----877899999998557233211244544334--46
Q gi|254780215|r    2 LIDTHCHLLLPD--FDEDRHDVIMRAHQANVLKMIAIA-IK-----VKDFVPLIKLCQDYPSSIFCSVGTHPCHAH--EE   71 (262)
Q Consensus         2 ~iD~H~HL~~~~--~~~d~~~~i~~a~~~gv~~~i~~~-~~-----~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~--~~   71 (262)
                      +||.|+|+..+-  +.++++.-...|...||..++... ++     +...+.....++..+..     .++|+.+.  ..
T Consensus        57 ~ID~HvH~~~pg~~~~e~~~s~~~AA~~GGvTtv~~~p~t~p~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  131 (425)
T PRK07627         57 LVDLSARLREPGYEYKATLESEMAAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQA-----HVYPLGALTVGL  131 (425)
T ss_pred             EEECCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC-----CEEEECCEECCC
T ss_conf             997775568898541010552789997188789985798888888789999999999855898-----799855434588


Q ss_pred             CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-----------------
Q ss_conf             788998853100133321004467755332211102467899998766420442033000233-----------------
Q gi|254780215|r   72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD-----------------  134 (262)
Q Consensus        72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~-----------------  134 (262)
                      ..+.+.++..+... .+++.+.-+.       +.. -...+.+-++.|..++.++.+|+-+..                 
T Consensus       132 ~~~~l~e~~~l~~~-G~~~f~~~~~-------~~~-d~~~l~~~~~~a~~~g~~~~~h~ed~~~~~~~~~~~g~~~~~~g  202 (425)
T PRK07627        132 KGEVLTEMVELTEA-GCVGFSQANV-------PVV-DTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVAASGAVASRLG  202 (425)
T ss_pred             CCCHHHHHHHHHHC-CCEEEECCCC-------CCC-CHHHHHHHHHHHCCCCCEEEEECCCHHHHCCCCCCCCCCHHHCC
T ss_conf             82024307889864-8647603663-------357-99999998876403695799715657886187554664033228


Q ss_pred             -------HH---HHHHHHHHHHCCCCCC-CCEECC-CCHHHHHHHHCCCCE-----------------------EECCCC
Q ss_conf             -------35---7999853100036753-311214-640234432103520-----------------------202332
Q gi|254780215|r  135 -------DD---MAAILQEEMKKGPFPF-VIHCFS-SSQKLADICLELGGY-----------------------ISFTGM  179 (262)
Q Consensus       135 -------~~---~l~iL~~~~~~~~~~~-i~H~Fs-G~~~~~~~~l~~g~y-----------------------~S~~g~  179 (262)
                             .|   +-+++. .......++ +.|.=+ ++.+.++++...|..                       +-++|.
T Consensus       203 l~~~p~~aE~~ai~~~~~-la~~~g~~~hi~Hiss~~~l~~I~~ak~~G~~vt~Et~ph~L~l~~~~~~~~~~~~k~~PP  281 (425)
T PRK07627        203 LSGVPVAAETIALHTIFE-LMRVTGARVHLARLSSAAGLALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPP  281 (425)
T ss_pred             CCCCCHHHHHHHHHHHHH-HHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHCCCHHHHCCCCCCEECCCC
T ss_conf             988983440345889999-9987299689970587999999998987799579997175302776785656762432488


Q ss_pred             CCHHHHHHHHHHHHCCCCCCE-EEEEC-CCCCCCC---CC----CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             211333223333210566717-98307-8667877---76----887588244999999999872899899999999999
Q gi|254780215|r  180 ITFPKYDALRAIARGIPMDRV-LVETD-SPYIVPV---SC----QGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNA  250 (262)
Q Consensus       180 i~~~~~~~~~e~v~~iPldri-LlETD-sP~l~p~---~~----r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~  250 (262)
                      +-.+..  -..+.+.+....| .+-|| +|+-...   ++    .|-..-...++...+.+ .-.+++++++.+.+..|-
T Consensus       282 LR~~~d--~eaL~~~l~~G~Id~i~SDH~p~~~~~K~~~~~~~~~G~~G~e~~lpl~l~~~-~~~~lsL~~~v~~~s~nP  358 (425)
T PRK07627        282 LRSQRD--RDAIRAALADGTIDAICSDHTPVDDDEKLLPFAEATPGATGLELLLPLTLKWA-DEARVPLARALARITSAP  358 (425)
T ss_pred             CCCHHH--HHHHHHHHHCCCEEEEECCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHH
T ss_conf             797788--99998786469878996488888976765870328797480765999999999-816989999999997999


Q ss_pred             HHHHHH
Q ss_conf             998425
Q gi|254780215|r  251 LKLFSK  256 (262)
Q Consensus       251 ~~~f~~  256 (262)
                      -++||-
T Consensus       359 Ak~~Gl  364 (425)
T PRK07627        359 ARVLGL  364 (425)
T ss_pred             HHHHCC
T ss_conf             999699


No 57 
>PRK06886 hypothetical protein; Validated
Probab=97.65  E-value=0.0074  Score=39.73  Aligned_cols=217  Identities=14%  Similarity=0.086  Sum_probs=107.2

Q ss_pred             HHHHHHCCCCEE---EEE--CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCC
Q ss_conf             999998699899---991--679877899999998557233211244544334467889988531001333210044677
Q gi|254780215|r   22 IMRAHQANVLKM---IAI--AIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGL   96 (262)
Q Consensus        22 i~~a~~~gv~~~---i~~--~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGL   96 (262)
                      ++.+...|+.++   +.+  ......++-++++.+.|.+.+-.-+..-|..--- .+...+.+......  +-.||  |+
T Consensus        75 l~~~ia~Gt~aiRTHVDvDp~~gl~~l~a~~~lre~~~~~idlQivafpq~G~~-~~~~~~~l~~~~~~--vDvVG--Gi  149 (328)
T PRK06886         75 IELMISQGVTAFGTFVDIDPVCEDRAIIAAHKAREVYKSDIILKFANQTLKGVI-EPTAKKWFDIGSEM--VDMIG--GL  149 (328)
T ss_pred             HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC-CCHHHHHHHHHHHH--CCCCC--CC
T ss_conf             999998195315755513654344789999999998627746999567631225-81699999999875--57448--87


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH---HHHHHHHHHH----HHHCCCCCCCCEECCCC---HH----
Q ss_conf             5533221110246789999876642044203300023---3357999853----10003675331121464---02----
Q gi|254780215|r   97 DRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA---DDDMAAILQE----EMKKGPFPFVIHCFSSS---QK----  162 (262)
Q Consensus        97 D~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a---~~~~l~iL~~----~~~~~~~~~i~H~FsG~---~~----  162 (262)
                      .++ +..+.+...+....-+++|+++|+||=+||=..   ....++.|-+    +.-.+ .-.+-||++=.   .+    
T Consensus       150 P~~-d~~~~~~~~~~ld~lf~lA~~~g~~vD~H~De~~dp~~~~le~la~~t~~~G~~G-RVt~sH~~sL~~~~~~~~~~  227 (328)
T PRK06886        150 PYR-DELDYGRGLEAMDILLDKAKSLGIMCHVHVDQFNTPKEKETEQLCDKTIEHGMQG-RVVAIHGISIGAHSKEYRYK  227 (328)
T ss_pred             CCC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCC-CEEEEEHHHHHCCCHHHHHH
T ss_conf             677-8666101699999999999984997476018999911768999999999957799-77753301464389999999


Q ss_pred             HHHHHHCCCCEEECCCCC-C--------HHHH---HHHHHHHHCCCCCCEEEEECC---CCCCCCCCCCCCCCHHHHHHH
Q ss_conf             344321035202023322-1--------1333---223333210566717983078---667877768875882449999
Q gi|254780215|r  163 LADICLELGGYISFTGMI-T--------FPKY---DALRAIARGIPMDRVLVETDS---PYIVPVSCQGKRNEPAYVVNT  227 (262)
Q Consensus       163 ~~~~~l~~g~y~S~~g~i-~--------~~~~---~~~~e~v~~iPldriLlETDs---P~l~p~~~r~~~n~P~~i~~~  227 (262)
                      .++.+.+.|.-+--+|.. .        +++.   ..++++.+.  -=++-+=||.   ||.   |+.     -.++..+
T Consensus       228 l~~~la~agi~vis~P~~nl~l~gr~d~~P~~RgvtpV~eL~~~--GV~Va~G~Dni~Dpw~---P~G-----~gDmL~~  297 (328)
T PRK06886        228 LYEKMRDAQMMMIACPMAWIDSNRKEDLMPFHNALTPADEMIPE--GITVAIGTDNICDYMV---PLC-----EGDMWQE  297 (328)
T ss_pred             HHHHHHHCCCCEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHC--CCEEEEECCCCCCCCC---CCC-----CCCHHHH
T ss_conf             99999984996998812575506877878877888889999977--9959981578878886---997-----7649999


Q ss_pred             HHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Q ss_conf             999998728-9989999999999999842
Q gi|254780215|r  228 AKALAKEKD-VSYEDLMEETTKNALKLFS  255 (262)
Q Consensus       228 ~~~iA~i~~-~~~eei~~~~~~N~~~~f~  255 (262)
                      +..++..-. -+.|++.+.++.|..|..|
T Consensus       298 ~~l~~~~~~~~~~e~~~~~~T~n~ak~lg  326 (328)
T PRK06886        298 LSLLAAGCRFPNLEEMVNIASINGRKVLG  326 (328)
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHC
T ss_conf             99999983658899998886032888738


No 58 
>PRK01211 dihydroorotase; Provisional
Probab=97.62  E-value=0.0079  Score=39.53  Aligned_cols=231  Identities=14%  Similarity=0.183  Sum_probs=111.8

Q ss_pred             EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEECC------CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             168613888756--5226899999999869989999167------98778999999985572332112445443344678
Q gi|254780215|r    2 LIDTHCHLLLPD--FDEDRHDVIMRAHQANVLKMIAIAI------KVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE   73 (262)
Q Consensus         2 ~iD~H~HL~~~~--~~~d~~~~i~~a~~~gv~~~i~~~~------~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~   73 (262)
                      +||.|+|+..+-  ..+++..--..|...|++.++....      +.+.+...++.+++   ..+.-+|+|+....+.. 
T Consensus        50 ~ID~HvH~rePG~~~kEd~~tgs~AAa~GGvTtv~~mPnt~ppi~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~-  125 (413)
T PRK01211         50 ATDIHVHFRTPGETYKEDFSTGSLSAIFGGTTTVMDMPNNKIPIDDYNAFSDKLGIISR---TSYCDFGLYSMETGDNS-  125 (413)
T ss_pred             EEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC---CCEEEEEEEEEECCCCH-
T ss_conf             77996026999943032099999999829918999889999996779999999997404---75467887871237425-


Q ss_pred             HHHHHHHHHCCCCCCCEECCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCEEECHHHH------------------
Q ss_conf             8998853100133321004467755332211-102467899998766420442033000233------------------
Q gi|254780215|r   74 VLVDELVCLASHPRVVAIGETGLDRYHNAHT-IEEQKVVFLRHIEASRITGIPLVIHSRSAD------------------  134 (262)
Q Consensus        74 ~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~-~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~------------------  134 (262)
                          .+..         -|.+|+-.|...+. ...-..+....++.+++++.|+++||-+..                  
T Consensus       126 ----~~~~---------~~~~g~k~f~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~HaEd~~~~~~~~~~~~~~~~~~~~  192 (413)
T PRK01211        126 ----LIID---------KRSIGLKVYLGGSTNTNGTDVITNEEISKINELNVPVFFHGEDEECLKKHQFEAKNLREHNLS  192 (413)
T ss_pred             ----HHHH---------HHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCHHHCCCC
T ss_conf             ----5443---------131031441056555564045459999999867992898535878876433045686563155


Q ss_pred             ----HHH--HHHHHHHHHCCCCCCCCEECCCCHHHHHHH--------------HCCCCEEECCCCCCHHH-HHHHHHHHH
Q ss_conf             ----357--999853100036753311214640234432--------------10352020233221133-322333321
Q gi|254780215|r  135 ----DDM--AAILQEEMKKGPFPFVIHCFSSSQKLADIC--------------LELGGYISFTGMITFPK-YDALRAIAR  193 (262)
Q Consensus       135 ----~~~--l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~--------------l~~g~y~S~~g~i~~~~-~~~~~e~v~  193 (262)
                          .++  .+.+.....  ..+.+.|-=  +.+....+              .+.|.++=++|.+--++ .+.+.+.++
T Consensus       193 rp~~~e~~av~~~~~~~~--~~~~~~h~s--s~e~~~~i~~Et~pHhL~l~de~~~g~~~k~nPPLRs~~d~~aL~~al~  268 (413)
T PRK01211        193 RPIECEILAAEYVKNLDL--KTKIMAHVS--SPDVIGEFLREVTPHHLLLNDEMPLGSYGKVNPPLRDRSTQSRLLNSYI  268 (413)
T ss_pred             CCHHHHHHHHHHHHHHHH--HCCEEEEEE--CHHHHHHHHHEECCEEEECCCCCCCCCCCEECCCCCCHHHHHHHHHHHH
T ss_conf             759999999999998764--338799994--6889877874204504871552016876166899989799999999874


Q ss_pred             CCCCCCEEEEEC-CCCCCCCC--CC----CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             056671798307-86678777--68----87588244999999999872899899999999999998425
Q gi|254780215|r  194 GIPMDRVLVETD-SPYIVPVS--CQ----GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       194 ~iPldriLlETD-sP~l~p~~--~r----~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      .=-.|-|  =|| +|+.....  +.    |-..--..++..... ..-..++.+.+.+.+..|-.++||-
T Consensus       269 dG~ID~I--aSDHaPh~~~eK~~f~~a~~G~~GlEt~lpl~l~~-v~~g~l~l~~lv~~~s~nPAki~gl  335 (413)
T PRK01211        269 SGNFDIL--SSDHAPHTENDKTEFEYAKSGIIGVETRIPLMLAL-VSKKILPLDVLYKTAIENPPSIFGI  335 (413)
T ss_pred             CCCCCEE--EECCCCCCHHHCCCHHHCCCCCCCCCCHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             3998889--63788989466188645888987614389999999-8748979999999999999999599


No 59 
>PRK07213 chlorohydrolase; Provisional
Probab=97.59  E-value=0.0088  Score=39.23  Aligned_cols=135  Identities=13%  Similarity=0.050  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHH---------CCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCC
Q ss_conf             7899998766420442033000233357999853100---------0367533112146402344321035202023322
Q gi|254780215|r  110 VVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMK---------KGPFPFVIHCFSSSQKLADICLELGGYISFTGMI  180 (262)
Q Consensus       110 ~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~---------~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i  180 (262)
                      +.+....++|++.++|+.+|.-....+.-..++.+..         ......+.||---+.+.++.+.+.|..++..|..
T Consensus       181 e~l~~~~~~a~~~~~~~~~H~aE~~~e~~~~~~~~g~~~ve~l~~~g~~~~~lvH~v~l~d~ei~lla~~g~~v~hcP~S  260 (378)
T PRK07213        181 EELKFICKECRKAGKIASIHAAEHKGSVEYSLEKYGITEIERLIDLKFKPDFLVHATHPSSDDLSLLKENNIPVVVCPRA  260 (378)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEECHHH
T ss_conf             99999999999769937996179778999999984998789998579998828983579999999999759957988376


Q ss_pred             CHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             11333---22333321056671798307866787776887588244999999999872899899999999999998425
Q gi|254780215|r  181 TFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       181 ~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      ...-+   ..++++++.  -=++-|=||++-         -|.+ ++....+.+.++..++.+++.+-.+.|.-+.+|.
T Consensus       261 N~~L~~G~~pv~~~~~~--Gv~V~LGTD~~~---------sn~~-dm~~em~~~~~~~~~~~~e~L~mAT~~GA~aLg~  327 (378)
T PRK07213        261 NASFNVGIPPISEMLEY--NIKLGLGTDNFM---------ANSP-SIFKEMDFIYKIYHIDPKEILKMATINGAEILGL  327 (378)
T ss_pred             HHHHCCCCCCHHHHHHC--CCCEEEECCCCC---------CCCH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             87634799889999978--995899748886---------6886-5999999999873999999999999999998099


No 60 
>PRK12393 amidohydrolase; Provisional
Probab=97.58  E-value=0.009  Score=39.15  Aligned_cols=137  Identities=16%  Similarity=0.133  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHHHHHHH-----------HHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf             67899998766420442033000233357-----------9998531000367533112146402344321035202023
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRSADDDM-----------AAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT  177 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~-----------l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~  177 (262)
                      .+.+.+..++|++++.|+.+|.-....++           ++.|.++..-++.-...||--=+.+.++.+.+.|..++.+
T Consensus       219 ~e~l~~~~~~A~~~~~~~~~H~~E~~~e~~~~~~~~g~~pv~~l~~~G~Lg~~~~~aH~v~l~~~ei~lla~~g~~v~h~  298 (459)
T PRK12393        219 PELLREVARAARGMGLRLHSHLSETVDYVDFCRERYGMSPVQFVAEHDWLGPDVWFAHLVHLDAEEIALLAQTGTGIAHC  298 (459)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEC
T ss_conf             99999999999864991787414435799999988099989999971888876276612268879999999729748976


Q ss_pred             CCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH---HHHHHH----CCCHHHHHHHHH
Q ss_conf             322113332---2333321056671798307866787776887588244999999---999872----899899999999
Q gi|254780215|r  178 GMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAK---ALAKEK----DVSYEDLMEETT  247 (262)
Q Consensus       178 g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~---~iA~i~----~~~~eei~~~~~  247 (262)
                      |.....-..   .++++.+. . =++-|=||++-.         |...++....+   .+.+..    .++.+++.+-.+
T Consensus       299 P~Sn~~lg~G~~p~~~~~~~-G-v~v~LGtDg~~s---------n~~~dm~~~mr~a~l~~r~~~~~~~~~~~~~l~~AT  367 (459)
T PRK12393        299 PQSNARLGSGIAPVLAMAAA-G-VPISLGVDGAAS---------NESASMLSEAHFAWLVHRAEGGASATTVEDVIHWGT  367 (459)
T ss_pred             HHHHHHHCCCCCCHHHHHHC-C-CCEEEECCCCCC---------CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             14476616898889999867-9-968996899877---------885249999999999977607987789999999998


Q ss_pred             HHHHHHHHH
Q ss_conf             999998425
Q gi|254780215|r  248 KNALKLFSK  256 (262)
Q Consensus       248 ~N~~~~f~~  256 (262)
                      .|.-+.+|.
T Consensus       368 ~~gA~aLg~  376 (459)
T PRK12393        368 AGGAQVLGL  376 (459)
T ss_pred             HHHHHHHCC
T ss_conf             888998399


No 61 
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=97.57  E-value=0.0092  Score=39.08  Aligned_cols=35  Identities=20%  Similarity=0.212  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             44999999999872899899999999999998425
Q gi|254780215|r  222 AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       222 ~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      ..++......-+-.+++++++.+.++.|.-|+||-
T Consensus       338 ~~l~~~~~~~~~~~~l~le~~v~~~T~nPA~~lgl  372 (447)
T cd01315         338 LGLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGL  372 (447)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             78999999999829999999999997889998498


No 62 
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=97.56  E-value=0.0042  Score=41.37  Aligned_cols=130  Identities=18%  Similarity=0.112  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHCCCCCEEECHHHH-HHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHH---H
Q ss_conf             99998766420442033000233-3579998531000367533112146402344321035202023322113332---2
Q gi|254780215|r  112 FLRHIEASRITGIPLVIHSRSAD-DDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYD---A  187 (262)
Q Consensus       112 F~~ql~lA~e~~~pv~iH~r~a~-~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~---~  187 (262)
                      .++.++.|.+.++|+.+|+..-. ....+...+.    ....+-||..-+.+.++.+.+.|...++.|...+.-..   .
T Consensus       195 ~~~~~~~a~~~g~~~~~H~~~~~~~~~~~~~~~~----g~~~~~H~~~~~~~~i~~l~~~g~~~~~~P~~~~~l~~~~~~  270 (371)
T cd01296         195 SRRILEAAKEAGLPVKIHADELSNIGGAELAAEL----GALSADHLEHTSDEGIAALAEAGTVAVLLPGTAFSLRETYPP  270 (371)
T ss_pred             HHHHHHHHHHCCCCEEEEHHHHCCCCHHHHHHHC----CCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCC
T ss_conf             9999999998599469863540553189999980----997210788863999999997398089875147765688767


Q ss_pred             HHHHHHCCCCCCEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3333210566717983078-66787776887588244999999999872899899999999999998425
Q gi|254780215|r  188 LRAIARGIPMDRVLVETDS-PYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       188 ~~e~v~~iPldriLlETDs-P~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      .+++++.  -=++.+=||+ |...+        . .++.......+...+++.++..+..+.|.-+.+|.
T Consensus       271 ~~~l~~a--Gv~v~lGtD~~p~~~~--------~-~~~~~~~~~a~~~~~l~~~eaL~~aT~n~A~~lg~  329 (371)
T cd01296         271 ARKLIDA--GVPVALGTDFNPGSSP--------T-SSMPLVMHLACRLMRMTPEEALTAATINAAAALGL  329 (371)
T ss_pred             HHHHHHC--CCCEEEEECCCCCCCC--------H-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             8999876--9976776479988770--------3-37999999999985999999999999999999589


No 63 
>PRK08417 dihydroorotase; Provisional
Probab=97.54  E-value=0.01  Score=38.82  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             44999999999872899899999999999998425
Q gi|254780215|r  222 AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       222 ~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      ..++.....+-.-+.++++.+.+.+..|--|+||.
T Consensus       300 ~~lpll~~~~v~~g~isl~~~v~~~s~nPAki~gl  334 (387)
T PRK08417        300 EYFSLCYTKLIKSGFINMSELSRFTSKNPAEFLGL  334 (387)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999869989999999997889999598


No 64 
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=97.52  E-value=0.011  Score=38.62  Aligned_cols=33  Identities=18%  Similarity=0.217  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             4999999999872899899999999999998425
Q gi|254780215|r  223 YVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       223 ~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      .++.+... +.-++++++++.+.++.|.-++||.
T Consensus       336 ~l~~~~~~-~~~~glsl~~av~~~s~nPA~~lGL  368 (442)
T TIGR03178       336 TLPVMWDE-ARQRGLPLEDIARLMATNPAKRFGL  368 (442)
T ss_pred             HHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             99999999-9856877999999997879998598


No 65 
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=97.52  E-value=0.011  Score=38.60  Aligned_cols=143  Identities=14%  Similarity=0.151  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCE-EECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH
Q ss_conf             0246789999876642044203-300023335799985310003675331121464023443210352020233221133
Q gi|254780215|r  106 EEQKVVFLRHIEASRITGIPLV-IHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPK  184 (262)
Q Consensus       106 e~Q~~vF~~ql~lA~e~~~pv~-iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~  184 (262)
                      ........+-+.+|+..+-++- .|.--  .+.++++++....-..-+..|...=+.+..   .+.|.++-++|.+--+.
T Consensus       154 ~aE~~av~r~l~la~~~g~~~hi~hvSt--~~~l~~i~~a~~~vt~et~ph~L~l~~~~~---~~~~~~~k~~PPLR~~~  228 (361)
T cd01318         154 EAAAVATARALKLARRHGARLHICHVST--PEELKLIKKAKPGVTVEVTPHHLFLDVEDY---DRLGTLGKVNPPLRSRE  228 (361)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEECCC--HHHHHHHHHCCCCCEEEECHHHHCCCHHHH---CCCCCCEEECCCCCCHH
T ss_conf             9999999999999998599689994088--999999997599965885236542781343---15687166359989778


Q ss_pred             HHHHHHHHHCCCCCCE-EEEEC-CCCCCCCC---CC----CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             3223333210566717-98307-86678777---68----8758824499999999987289989999999999999842
Q gi|254780215|r  185 YDALRAIARGIPMDRV-LVETD-SPYIVPVS---CQ----GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS  255 (262)
Q Consensus       185 ~~~~~e~v~~iPldri-LlETD-sP~l~p~~---~r----~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~  255 (262)
                      .  -..+++.+-...| .+-|| +|+-....   +.    |-..--..++...+ +..-.+++++++.+.+..|-.++||
T Consensus       229 d--r~aL~~~l~~G~Id~i~SDH~P~~~~~K~~~f~~a~~Gi~g~e~~l~l~~~-lv~~g~l~l~~~v~~~s~nPAki~g  305 (361)
T cd01318         229 D--RKALLQALADGRIDVIASDHAPHTLEEKRKGYPAAPSGIPGVETALPLMLT-LVNKGILSLSRVVRLTSHNPARIFG  305 (361)
T ss_pred             H--HHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCCCCEEHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             9--999999986599649972898889898368977577875109889999999-9872881499999999688999949


Q ss_pred             H
Q ss_conf             5
Q gi|254780215|r  256 K  256 (262)
Q Consensus       256 ~  256 (262)
                      .
T Consensus       306 l  306 (361)
T cd01318         306 I  306 (361)
T ss_pred             C
T ss_conf             8


No 66 
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=97.50  E-value=0.012  Score=38.42  Aligned_cols=221  Identities=13%  Similarity=0.066  Sum_probs=116.6

Q ss_pred             HHHHHHHCCCCEEEEEC-CCHHHHHHHHHHHHHCCCCCCCCCCCCC----CCCCCCCH--H-HHHHHHHHCCCCCCCEEC
Q ss_conf             99999986998999916-7987789999999855723321124454----43344678--8-998853100133321004
Q gi|254780215|r   21 VIMRAHQANVLKMIAIA-IKVKDFVPLIKLCQDYPSSIFCSVGTHP----CHAHEENE--V-LVDELVCLASHPRVVAIG   92 (262)
Q Consensus        21 ~i~~a~~~gv~~~i~~~-~~~~~~~~~~~l~~~~p~~i~~a~GiHP----~~~~~~~~--~-~~~~l~~l~~~~~~~aIG   92 (262)
                      .+.++...|+..+..-. ........+.+.+.+.....+.+.++-.    .......+  . ..+.+++.....    -.
T Consensus       108 ~~~e~l~~G~t~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~  183 (421)
T COG0402         108 ALLEMLRNGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQDVAFPDPGAETDEELEETEELLREAHGLG----RD  183 (421)
T ss_pred             HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC----CC
T ss_conf             99999966976897425433255778999999828732763200036778643333444668999999986269----86


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHH-----------HHHHCCCCCCCCEECCCCH
Q ss_conf             46775533221110246789999876642044203300023335799985-----------3100036753311214640
Q gi|254780215|r   93 ETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQ-----------EEMKKGPFPFVIHCFSSSQ  161 (262)
Q Consensus        93 EiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~-----------~~~~~~~~~~i~H~FsG~~  161 (262)
                      -+|+.-+...+..+   +.++.-.++|.++|+|+-+|+-...++.-..+.           .+....+.-+..||...+.
T Consensus       184 ~~~~~p~~~~~~~~---~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~  260 (421)
T COG0402         184 VVGLAPHFPYTVSP---ELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSE  260 (421)
T ss_pred             EEEECCCCCCCCCH---HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEECCCCCH
T ss_conf             37762777667798---999999999972799379981687327889998750248888864486578749996687998


Q ss_pred             HHHHHHHCCCCEEECCCCCCHHHHHH---HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-C
Q ss_conf             23443210352020233221133322---3333210566717983078667877768875882449999999998728-9
Q gi|254780215|r  162 KLADICLELGGYISFTGMITFPKYDA---LRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKD-V  237 (262)
Q Consensus       162 ~~~~~~l~~g~y~S~~g~i~~~~~~~---~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~-~  237 (262)
                      +..+...+.|.-++..|.....-+..   .++.++..  =++.+=||+--.      .....|..-...+..+.+... .
T Consensus       261 ~e~~~l~~~g~~v~~cP~sN~~L~sG~~p~~~~~~~g--v~v~~gTD~~~~------~~~~d~l~~~~~a~~l~~~~~~~  332 (421)
T COG0402         261 EELELLAESGASVVHCPRSNLKLGSGIAPVRRLLERG--VNVALGTDGAAS------NNVLDMLREMRTADLLQKLAGGL  332 (421)
T ss_pred             HHHHHHHHCCCEEEECHHHHHHCCCCCCCHHHHHHCC--CEEEEEEECCCC------CCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             9999998669859988466643477788889998546--828999724676------78635689999999998763456


Q ss_pred             CHH----HHHHHHHHHHHHHHHH
Q ss_conf             989----9999999999998425
Q gi|254780215|r  238 SYE----DLMEETTKNALKLFSK  256 (262)
Q Consensus       238 ~~e----ei~~~~~~N~~~~f~~  256 (262)
                      ...    ++.+..+.|.-+.+|+
T Consensus       333 ~~~~~~~~~l~~aT~~gA~alg~  355 (421)
T COG0402         333 LAAQLPGEALDMATLGGAKALGL  355 (421)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             54310378999982789998089


No 67 
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=97.44  E-value=0.014  Score=37.90  Aligned_cols=215  Identities=10%  Similarity=0.013  Sum_probs=113.3

Q ss_pred             HHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHCCCCCCCCCCC------CCCCCCCCCHHHHHHHHHHCCC-----CCCC
Q ss_conf             99999869989999167-9877899999998557233211244------5443344678899885310013-----3321
Q gi|254780215|r   22 IMRAHQANVLKMIAIAI-KVKDFVPLIKLCQDYPSSIFCSVGT------HPCHAHEENEVLVDELVCLASH-----PRVV   89 (262)
Q Consensus        22 i~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~p~~i~~a~Gi------HP~~~~~~~~~~~~~l~~l~~~-----~~~~   89 (262)
                      +.++..+|++.+...++ .+.......+.+...+-.  ..+|.      .|....+..+..++....++..     +++.
T Consensus       117 ~~e~l~~G~TTv~~~~~~~~~~~~~~~~a~~~~GiR--~~~g~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (429)
T cd01303         117 LDELLRNGTTTACYFATIHPESTEALFEEAAKRGQR--AIAGKVCMDRNAPEYYRDTAESSYRDTKRLIERWHGKSGRVK  194 (429)
T ss_pred             HHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCE--EEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             999986791699971577868999999999982995--999863047788421026999999999999998338888447


Q ss_pred             EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCEEECHHHHHHH-------------HHHHHHHHHCCCCCCCCE
Q ss_conf             004467755332211102467899998766420-442033000233357-------------999853100036753311
Q gi|254780215|r   90 AIGETGLDRYHNAHTIEEQKVVFLRHIEASRIT-GIPLVIHSRSADDDM-------------AAILQEEMKKGPFPFVIH  155 (262)
Q Consensus        90 aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~-~~pv~iH~r~a~~~~-------------l~iL~~~~~~~~~~~i~H  155 (262)
                        ..++.-+     ....-.+.+++..++|.++ ++|+.+|+-....|+             ++.+.+...-++.-...|
T Consensus       195 --~~v~p~~-----~~~~s~e~l~~~~~la~~~~~~~i~~H~~E~~~e~~~~~~~~~~~~~~~~~l~~~GlL~~~~~~aH  267 (429)
T cd01303         195 --PAITPRF-----APSCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDYLDVYDKYGLLTEKTVLAH  267 (429)
T ss_pred             --EEEECCC-----CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEE
T ss_conf             --9982566-----887889999999999987799869972206567999999982799966678875699767559985


Q ss_pred             ECCCCHHHHHHHHCCCCEEECCCCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH--HHHHHH
Q ss_conf             214640234432103520202332211333---223333210566717983078667877768875882449--999999
Q gi|254780215|r  156 CFSSSQKLADICLELGGYISFTGMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYV--VNTAKA  230 (262)
Q Consensus       156 ~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i--~~~~~~  230 (262)
                      |---+.+.++.+.+.|..++++|...+.-.   ..++++++.  -=++-+=||+.-         -|.|.++  ...+..
T Consensus       268 ~v~l~d~ei~~la~~g~~v~~~P~sn~~lg~g~~p~~~l~~~--Gv~v~LGTD~~~---------~~s~~m~~~mr~a~~  336 (429)
T cd01303         268 CVHLSEEEFNLLKERGASVAHCPTSNLFLGSGLFDVRKLLDA--GIKVGLGTDVGG---------GTSFSMLDTLRQAYK  336 (429)
T ss_pred             ECCCCHHHHHHHHHCCCEEEECCHHHHHHCCCCCCHHHHHHC--CCEEEECCCCCC---------CCCCCHHHHHHHHHH
T ss_conf             214887999999955982776730587725888779999856--985997368888---------999479999999999


Q ss_pred             HHHHH--------CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99872--------899899999999999998425
Q gi|254780215|r  231 LAKEK--------DVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       231 iA~i~--------~~~~eei~~~~~~N~~~~f~~  256 (262)
                      +++++        .++.+|+.+..+.|.-|..|+
T Consensus       337 ~~~~~~~~~~~~~~~t~~e~l~~ATi~GArALgl  370 (429)
T cd01303         337 VSRLLGYELGGHAKLSPAEAFYLATLGGAEALGL  370 (429)
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             9998751468999899999999999999998399


No 68 
>PRK07328 histidinol-phosphatase; Provisional
Probab=97.39  E-value=0.016  Score=37.56  Aligned_cols=126  Identities=17%  Similarity=0.178  Sum_probs=63.6

Q ss_pred             CEEEEECCCCC-HHHHCCHHHHHHHHHHCCCCEEEEECCCH---------------------HHHHHHHHHHHHCCCCCC
Q ss_conf             91686138887-56522689999999986998999916798---------------------778999999985572332
Q gi|254780215|r    1 MLIDTHCHLLL-PDFDEDRHDVIMRAHQANVLKMIAIAIKV---------------------KDFVPLIKLCQDYPSSIF   58 (262)
Q Consensus         1 M~iD~H~HL~~-~~~~~d~~~~i~~a~~~gv~~~i~~~~~~---------------------~~~~~~~~l~~~~p~~i~   58 (262)
                      |++|.|+|-.. ..-...+++.+++|.+.|+..+..+...+                     .-+..+.++.++|++ +-
T Consensus         1 M~~D~H~HT~~s~~a~~~~ee~v~~Ai~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~-i~   79 (268)
T PRK07328          1 MLVDSHLHTPLCGHATGTPEEYVEEARAKGLAEIGFTDHLPMYWLPPEWYDPPWAMRLEELPAYVSEVLRVRERFPD-LP   79 (268)
T ss_pred             CCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CC
T ss_conf             98474547998899888199999999987999899727999777874445854345688899999999999987259-93


Q ss_pred             CCCCCCCCCCCCCCHHHHHHH-HHHCCCC----CCCEECCCCCCCCC------CCCCCHHHHHHHHHHHHHHHHCCCC-C
Q ss_conf             112445443344678899885-3100133----32100446775533------2211102467899998766420442-0
Q gi|254780215|r   59 CSVGTHPCHAHEENEVLVDEL-VCLASHP----RVVAIGETGLDRYH------NAHTIEEQKVVFLRHIEASRITGIP-L  126 (262)
Q Consensus        59 ~a~GiHP~~~~~~~~~~~~~l-~~l~~~~----~~~aIGEiGLD~~~------~~~~~e~Q~~vF~~ql~lA~e~~~p-v  126 (262)
                      .-+|+==.+... .++....+ ... .-+    .+=.++..|.|...      .....+..+..|+.+.++.+. +.+ +
T Consensus        80 I~~GiE~d~~~~-~~~~~~~~l~~~-~~D~vigSvH~i~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~-~~fdv  156 (268)
T PRK07328         80 VRLGLEADFHPG-TEEFLARLLRRY-PFDYVIGSVHYLGAWGFDNPDLVAEYARRDLDELYRRYFALVEQAARS-GLFDA  156 (268)
T ss_pred             EEECCCCCCCCC-HHHHHHHHHHHC-CCCEEEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-CCCCE
T ss_conf             675553466755-399999999748-997488877514887777877888873058999999999999999865-89888


Q ss_pred             EEEC
Q ss_conf             3300
Q gi|254780215|r  127 VIHS  130 (262)
Q Consensus       127 ~iH~  130 (262)
                      +=|-
T Consensus       157 lgH~  160 (268)
T PRK07328        157 IGHL  160 (268)
T ss_pred             ECCC
T ss_conf             2553


No 69 
>PRK06687 chlorohydrolase; Validated
Probab=97.39  E-value=0.016  Score=37.54  Aligned_cols=137  Identities=13%  Similarity=0.046  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHH-----------HHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf             678999987664204420330002333579998531-----------000367533112146402344321035202023
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEE-----------MKKGPFPFVIHCFSSSQKLADICLELGGYISFT  177 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~-----------~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~  177 (262)
                      .+.++.-.++|+++++|+.+|+-....+.-.+++++           ..-++...+.||---+.+.++.+.+.|..++.+
T Consensus       195 ~~~l~~~~~~a~~~~~~~~~H~~e~~~e~~~~~~~~G~~p~~~l~~~G~l~~~~~~aH~~~~~~~e~~~la~~g~~v~~~  274 (422)
T PRK06687        195 TELLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRPVEYLASCGLFKRPTVIAHGVVLNENERAFLAEHDVRVAHN  274 (422)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHCCCEEEEC
T ss_conf             99999999999971984999964525689999998398858999867987865203103523506779999759717867


Q ss_pred             CCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH---HHHHHHHHH-----CCCHHHHHHHH
Q ss_conf             322113332---2333321056671798307866787776887588244999---999999872-----89989999999
Q gi|254780215|r  178 GMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVN---TAKALAKEK-----DVSYEDLMEET  246 (262)
Q Consensus       178 g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~---~~~~iA~i~-----~~~~eei~~~~  246 (262)
                      |...+.-..   .++++++. . =++-+=||++-.         |.+.++..   .+..+.+.+     .++.+++.+..
T Consensus       275 P~sn~~l~~g~~pv~~l~~~-G-v~v~LGtD~~~~---------~~~~d~~~~mr~a~~~~~~~~~~~~~~~~~~~l~~A  343 (422)
T PRK06687        275 PNSNLKLGSGIANVKAMLEA-G-VKVGIATDSVAS---------NNNLDMFEEMRIATLLQKGIHQDATALPVETALKLA  343 (422)
T ss_pred             CCCHHHCCCCCCCHHHHHHC-C-CCEEEECCCCCC---------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             52065427788779999876-9-948984688778---------986679999999999998751898678999999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999998425
Q gi|254780215|r  247 TKNALKLFSK  256 (262)
Q Consensus       247 ~~N~~~~f~~  256 (262)
                      +.|.-+.+|.
T Consensus       344 T~~gA~alg~  353 (422)
T PRK06687        344 TKGAAEVIGM  353 (422)
T ss_pred             HHHHHHHHCC
T ss_conf             9999998499


No 70 
>PRK09230 cytosine deaminase; Provisional
Probab=97.38  E-value=0.016  Score=37.43  Aligned_cols=220  Identities=7%  Similarity=0.053  Sum_probs=100.0

Q ss_pred             HHHHHHHCCCCEE---EEE-CCCHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCEEC
Q ss_conf             9999998699899---991-6798778999999985572332---112445443344678899885310013-3321004
Q gi|254780215|r   21 VIMRAHQANVLKM---IAI-AIKVKDFVPLIKLCQDYPSSIF---CSVGTHPCHAHEENEVLVDELVCLASH-PRVVAIG   92 (262)
Q Consensus        21 ~i~~a~~~gv~~~---i~~-~~~~~~~~~~~~l~~~~p~~i~---~a~GiHP~~~~~~~~~~~~~l~~l~~~-~~~~aIG   92 (262)
                      .++.+...|+.++   +.+ ......++..+++.+++.+.+-   .+|--|.........+.+   ++-+.. ..+  ||
T Consensus       107 ~l~~~ia~Gtt~iRtHvDv~dp~l~~leal~~~re~~~~~idlQiVAFPQ~Gl~~~~~~~~Ll---~eAl~~Gadv--vG  181 (426)
T PRK09230        107 TLKWQIANGIQHVRTHVDVSDPTLTALKAMLEVKEEVAPWVDLQIVAFPQEGILSYPNGEALL---EEALRLGADV--VG  181 (426)
T ss_pred             HHHHHHHHCHHHEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHH---HHHHHHCCCE--EE
T ss_conf             999999818244013345377035169999999998435201688830365424688779999---9999808988--84


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH---HHHHHHHHHHHHHHC--CCCCC-CCEECCC---CHHH
Q ss_conf             4677553322111024678999987664204420330002---333579998531000--36753-3112146---4023
Q gi|254780215|r   93 ETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS---ADDDMAAILQEEMKK--GPFPF-VIHCFSS---SQKL  163 (262)
Q Consensus        93 EiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~---a~~~~l~iL~~~~~~--~~~~~-i~H~FsG---~~~~  163 (262)
                        |+|+..  .+.+...+-+..-++||.+++++|=+|+=.   .....++.+-+....  ..-++ +=|||+-   +.+.
T Consensus       182 --Gvp~~~--~~~~~~~~~L~~vf~LA~~~~~~vDiHldE~~d~~~~~l~~ia~~t~~~g~~grVt~sH~~sL~~~~~~~  257 (426)
T PRK09230        182 --AIPHFE--FTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHREGMGARVTASHTTAMHSYNGAY  257 (426)
T ss_pred             --CCCCCC--CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCHHH
T ss_conf             --789977--7804579999999999998299858877788883378999999999983899865630005453399999


Q ss_pred             HHHHH----CCCCEEECCCCC-CHHHH-----------HHHHHHHHCCCCCCEEEEECC---CCCCCCCCCCCCCCHHHH
Q ss_conf             44321----035202023322-11333-----------223333210566717983078---667877768875882449
Q gi|254780215|r  164 ADICL----ELGGYISFTGMI-TFPKY-----------DALRAIARGIPMDRVLVETDS---PYIVPVSCQGKRNEPAYV  224 (262)
Q Consensus       164 ~~~~l----~~g~y~S~~g~i-~~~~~-----------~~~~e~v~~iPldriLlETDs---P~l~p~~~r~~~n~P~~i  224 (262)
                      +.+.+    +.|.-+--.|.. .|-..           ..++++...  -=++.+=||+   ||-   ||  ....|..+
T Consensus       258 ~~~~~~~laeagi~vvslP~tNl~LqgR~~~~p~~Rgvtpv~eL~~a--GV~V~~GsDnvrD~w~---P~--G~~D~Le~  330 (426)
T PRK09230        258 TSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRGITRVKEMLEA--GINVCFGHDDVFDPWY---PL--GTANMLQV  330 (426)
T ss_pred             HHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHC--CCEEEEECCCCCCCCC---CC--CCCCHHHH
T ss_conf             99999999982985785254332135656778888887789999976--9869980788877874---89--99889999


Q ss_pred             HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999998728-99899999999999998425
Q gi|254780215|r  225 VNTAKALAKEKD-VSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       225 ~~~~~~iA~i~~-~~~eei~~~~~~N~~~~f~~  256 (262)
                      ...+-.++.+.+ -+++...+.++.|.-++.|.
T Consensus       331 a~l~~~~~~l~~~~~l~~~~~~vT~~~A~~lgl  363 (426)
T PRK09230        331 LHMGLHVCQLMGYGQINDGLNLITTHSARTLNL  363 (426)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999970488778999999974258886199


No 71 
>PRK05451 dihydroorotase; Provisional
Probab=97.35  E-value=0.018  Score=37.23  Aligned_cols=234  Identities=16%  Similarity=0.154  Sum_probs=109.1

Q ss_pred             EEEECCCCCHHHHCCHHHHHHHHHHCCCCEE-EEECCCH--HHHHHHHHHHHHCCCCCCCCCCCCCC---CCCCCCHHHH
Q ss_conf             6861388875652268999999998699899-9916798--77899999998557233211244544---3344678899
Q gi|254780215|r    3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKM-IAIAIKV--KDFVPLIKLCQDYPSSIFCSVGTHPC---HAHEENEVLV   76 (262)
Q Consensus         3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~-i~~~~~~--~~~~~~~~l~~~~p~~i~~a~GiHP~---~~~~~~~~~~   76 (262)
                      -|-|+||-+   ...+..++.-... +..++ +++.+.+  .+...+.++.++.-..+-....+.|.   +..+...  .
T Consensus        11 dD~HvHlRd---G~~l~~v~~~~a~-~f~raivMPNl~PPi~t~~~a~~Yr~rI~~~~p~~~~f~PLMtlYLt~~~~--~   84 (345)
T PRK05451         11 DDWHLHLRD---GAMLKAVVPYTAR-QFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLYLTDNTD--P   84 (345)
T ss_pred             CEEEEECCC---CHHHHHHHHHHHH-HCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCC--H
T ss_conf             504666538---5578989999997-679899899999998999999999999997577888740214565427799--9


Q ss_pred             HHHHHHCCCCCCCEECCCCCCCCC----CCCCCH-HHHHHHHHHHHHHHHCCCCCEEECHH---------HHHHHH-HHH
Q ss_conf             885310013332100446775533----221110-24678999987664204420330002---------333579-998
Q gi|254780215|r   77 DELVCLASHPRVVAIGETGLDRYH----NAHTIE-EQKVVFLRHIEASRITGIPLVIHSRS---------ADDDMA-AIL  141 (262)
Q Consensus        77 ~~l~~l~~~~~~~aIGEiGLD~~~----~~~~~e-~Q~~vF~~ql~lA~e~~~pv~iH~r~---------a~~~~l-~iL  141 (262)
                      +.+.......-+.|+     -+|.    +.++.- ...+.+...++.+.++++|+.+|+-.         .+...+ .+|
T Consensus        85 ~ei~~~~~~~~v~a~-----KlYPaGaTTNS~~GV~~~~~~~~~le~m~~~g~pLliHGEv~~~~idifdrE~~Fi~~~l  159 (345)
T PRK05451         85 DELERAKASGVVTAA-----KLYPAGATTNSDAGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDFDIDIFDREAVFIDRVL  159 (345)
T ss_pred             HHHHHHHHCCCEEEE-----EECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             999998747967886-----302477535674214239999999999997599045214546776671105877669999


Q ss_pred             HHHHHC-CCCCCCC-EECCCCHHHHHHHHC-C--CCEEEC-----------------C------CCCCHHH-HHHHHHHH
Q ss_conf             531000-3675331-121464023443210-3--520202-----------------3------3221133-32233332
Q gi|254780215|r  142 QEEMKK-GPFPFVI-HCFSSSQKLADICLE-L--GGYISF-----------------T------GMITFPK-YDALRAIA  192 (262)
Q Consensus       142 ~~~~~~-~~~~~i~-H~FsG~~~~~~~~l~-~--g~y~S~-----------------~------g~i~~~~-~~~~~e~v  192 (262)
                      ...... +..++++ |.   +-..+=++++ .  +..-+|                 .      |.+-.++ .+.+++++
T Consensus       160 ~~l~~~fP~LkIvlEHI---STk~aV~~V~~~~~nv~atITpHHLlln~nd~~~~gi~Ph~~C~PvlK~~~dr~AL~~aa  236 (345)
T PRK05451        160 EPLRRRFPKLKIVFEHI---TTKDAVDYVREANDNLAATITPHHLLINRNDMLVGGIRPHLYCLPILKRETHQQALREAA  236 (345)
T ss_pred             HHHHHHCCCCEEEEEEC---CHHHHHHHHHHCCCCCCEEECCCCEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99998687876898743---579999999957998632750411243067774257786630078879988999999997


Q ss_pred             HCCCCCCEEEEECCCCCCCCCCC---------CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             10566717983078667877768---------87588244999999999872899899999999999998425
Q gi|254780215|r  193 RGIPMDRVLVETDSPYIVPVSCQ---------GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       193 ~~iPldriLlETDsP~l~p~~~r---------~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      .. .-.++.+=|||   +|.+-.         |--+.|..+...++...+.  -.++.+..=+..|..+|||.
T Consensus       237 ~s-G~~kfflGTDs---APH~~~~Ke~~cgcAGiftap~al~~~a~~Fe~~--~aLd~le~F~S~ng~~fY~l  303 (345)
T PRK05451        237 TS-GNPKFFLGTDS---APHARHAKESACGCAGCFSAPAALELYAEVFEEA--GALDKLEAFASLNGPDFYGL  303 (345)
T ss_pred             HC-CCCCEEEECCC---CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHCC
T ss_conf             27-99866873699---9874443368878887565387999999999865--82988999985607988199


No 72 
>PRK06846 deaminase; Validated
Probab=97.33  E-value=0.0023  Score=43.11  Aligned_cols=198  Identities=15%  Similarity=0.056  Sum_probs=93.2

Q ss_pred             HHHHHHHHCCCCEE---EE--ECCCHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf             99999998699899---99--16798778999999985572332---112445443344678899885310013332100
Q gi|254780215|r   20 DVIMRAHQANVLKM---IA--IAIKVKDFVPLIKLCQDYPSSIF---CSVGTHPCHAHEENEVLVDELVCLASHPRVVAI   91 (262)
Q Consensus        20 ~~i~~a~~~gv~~~---i~--~~~~~~~~~~~~~l~~~~p~~i~---~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aI   91 (262)
                      ..++.+...|...+   +.  +......++-.+++.+++.+.+-   .++--|...- ...   .+.+++.+... .-.|
T Consensus       118 ~~l~~~~a~Gtt~iRTHvDvdp~~gl~~lea~~~~~e~~~~~i~lqiVAFPQ~Gll~-~~~---~~Ll~eAl~~G-ad~v  192 (410)
T PRK06846        118 KLIELLLSNGATIIRSHCNIDPVIGLKNLENTQAALERYQDGFEYEIVAFPQHGLLR-SNS---EPLMREAMQMG-AHLV  192 (410)
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCC-CCH---HHHHHHHHHHC-CCEE
T ss_conf             999999973906187655447751135899999999984422106689710467567-447---99999999858-9679


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHH---HHHHHHHHHHH--CCCCCCC-CEECCC---CHH
Q ss_conf             44677553322111024678999987664204420330002333---57999853100--0367533-112146---402
Q gi|254780215|r   92 GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADD---DMAAILQEEMK--KGPFPFV-IHCFSS---SQK  162 (262)
Q Consensus        92 GEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~---~~l~iL~~~~~--~~~~~~i-~H~FsG---~~~  162 (262)
                      |  |+|-.....+.+   +.+..-++||.+++++|=+|+-...+   .+++.|-+...  ...-++. =|||+=   +.+
T Consensus       193 G--GvdP~~~d~d~~---~~L~~~f~LA~~~~~~vD~HldE~~d~~~~~l~~la~~t~~~g~~grVt~sH~~sL~~~~~~  267 (410)
T PRK06846        193 G--GVDPATVDGAIE---KSLDTMFQIAVEFNKGVDIHLHDTNPLGVATIKKLVETTEEAQWKGRVTISHAFALGDLNEE  267 (410)
T ss_pred             E--EECCCCCCCCHH---HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHCCCHH
T ss_conf             8--437766785799---99999999999809992363158898477899999999998299898883734446439999


Q ss_pred             HHHHHHC----CCCEEECCCCCCHHHH---HHHHHHHHCCCCCCEEEEECC---CCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             3443210----3520202332211333---223333210566717983078---66787776887588244999999999
Q gi|254780215|r  163 LADICLE----LGGYISFTGMITFPKY---DALRAIARGIPMDRVLVETDS---PYIVPVSCQGKRNEPAYVVNTAKALA  232 (262)
Q Consensus       163 ~~~~~l~----~g~y~S~~g~i~~~~~---~~~~e~v~~iPldriLlETDs---P~l~p~~~r~~~n~P~~i~~~~~~iA  232 (262)
                      .+++.++    .|.-+  ..  +.++.   ..++++.+ .. =++.+=+|.   ||-   ||.  .   .++..++..+|
T Consensus       268 ~~~~~~~~la~agI~v--vs--t~P~~r~v~pv~eL~~-aG-V~V~~g~Dni~Dpw~---P~G--~---gD~Le~a~~~a  333 (410)
T PRK06846        268 EVEELAERLAAQQISI--TS--TVPIGRLHMPLPLLHE-KG-VKVSLGTDSVTDHWS---PFG--T---GDMLEKANLYA  333 (410)
T ss_pred             HHHHHHHHHHHCCCEE--EE--ECCCCCCCCCHHHHHH-CC-CEEEEECCCCCCCCC---CCC--C---CCHHHHHHHHH
T ss_conf             9999999999859939--98--5899899787999997-69-919982688868987---888--8---88999999999


Q ss_pred             HHHCCCHHH
Q ss_conf             872899899
Q gi|254780215|r  233 KEKDVSYED  241 (262)
Q Consensus       233 ~i~~~~~ee  241 (262)
                      .+.++.-++
T Consensus       334 ~~~~~~~~~  342 (410)
T PRK06846        334 ERYRWIDEQ  342 (410)
T ss_pred             HHHCCCCHH
T ss_conf             986899889


No 73 
>PRK09060 dihydroorotase; Validated
Probab=97.26  E-value=0.022  Score=36.57  Aligned_cols=244  Identities=17%  Similarity=0.193  Sum_probs=107.2

Q ss_pred             EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             1686138887565--22689999999986998999916------798778999999985572332112445443344678
Q gi|254780215|r    2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE   73 (262)
Q Consensus         2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~   73 (262)
                      +||.|+|+..+-+  .+|+..--..|...|+..++...      .+.+.+....+.++.   ..++-+|+|.--..+ ..
T Consensus        58 ~ID~HvH~~ePG~~~ked~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~---~~~vd~~~~~g~~~~-~~  133 (444)
T PRK09060         58 VIDSQVHFREPGLEHKEDLETGSRAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARH---RMHCDFAFYVGGTRD-NA  133 (444)
T ss_pred             EEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC---CCCCEEEEEEEECCC-CH
T ss_conf             89755057999976524465534989809937999777889996889999999998742---654115677743278-77


Q ss_pred             HHHHHHHHHCCC-----------------------------CCCCEE--------CC-CCC----CC--CCCCCCCHHHH
Q ss_conf             899885310013-----------------------------332100--------44-677----55--33221110246
Q gi|254780215|r   74 VLVDELVCLASH-----------------------------PRVVAI--------GE-TGL----DR--YHNAHTIEEQK  109 (262)
Q Consensus        74 ~~~~~l~~l~~~-----------------------------~~~~aI--------GE-iGL----D~--~~~~~~~e~Q~  109 (262)
                      ..+..+..+..-                             .+.+++        .| -|+    |.  +....+.+.-.
T Consensus       134 ~~l~el~~~~g~~~~k~f~~~s~g~~~~~d~~~l~~~~~~~~~~~~~H~Ed~~~l~~~~~~~~~g~~~~~~~~r~~~~e~  213 (444)
T PRK09060        134 DELAELERLPGCAGVKVFMGSSTGDLLVEDDEGLRRILRNGRRRAAFHSEDEYRLRERKGLRVEGDPRSHPVWRDEEAAL  213 (444)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHHHHHHCCCCEEEECCCHHHHHHCHHHCCCCCHHHCCCCCCHHHHH
T ss_conf             89999985103654899841777861006999999999854873387347889986222321279976745558889999


Q ss_pred             HHHHHHHHHHHHCCCCCEE-ECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH-HHH
Q ss_conf             7899998766420442033-00023335799985310003675331121464023443210352020233221133-322
Q gi|254780215|r  110 VVFLRHIEASRITGIPLVI-HSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPK-YDA  187 (262)
Q Consensus       110 ~vF~~ql~lA~e~~~pv~i-H~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~-~~~  187 (262)
                      ....+-+.+|++.+.++-| |.-  -.+.++++++.......-+.-|-++=+.+.  -+-..|-++-++|.+--+. .+.
T Consensus       214 ~ai~r~i~la~~tg~~lhi~HvS--t~~~~~~i~~ak~~vt~E~~ph~L~l~~~d--~~~~~g~~~k~~PPLR~~~d~~a  289 (444)
T PRK09060        214 LATRRLVRLARETGRRIHVLHVS--TAEEIDFLADHKDVATVEVTPHHLTLAAPD--CYERLGTLAQMNPPVRDARHRDA  289 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHCCCCEEEEECHHHCCCHHH--HHHCCCCEEEECCCCCCHHHHHH
T ss_conf             99999999999879937999558--699999999708875899962052085166--65144963997489899799999


Q ss_pred             HHHHHHCCCCCCEEEEEC-CCCCCCCCCC-------CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             333321056671798307-8667877768-------87588244999999999872899899999999999998425
Q gi|254780215|r  188 LRAIARGIPMDRVLVETD-SPYIVPVSCQ-------GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       188 ~~e~v~~iPldriLlETD-sP~l~p~~~r-------~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      +.+.++.=-.|  .+=|| +|+-....-+       |-..-=..++..+..+.+ ..++++.+.+.+..|--|+||-
T Consensus       290 L~~~l~~G~ID--~I~SDH~P~~~~~K~~~f~~a~~G~~glEt~lplll~~v~~-g~lsl~~~v~~~s~nPAki~GL  363 (444)
T PRK09060        290 LWRGVRQGIVD--VLGSDHAPHTLEEKAKPYPASPSGMTGVQTLVPVMLDHVNA-GRLSLERFVDLTSAGPARIFGI  363 (444)
T ss_pred             HHHHHHCCCCC--EEECCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHCC
T ss_conf             99998669960--99708978897885787641138973088799999999982-9832999999971749998498


No 74 
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=97.15  E-value=0.028  Score=35.85  Aligned_cols=215  Identities=15%  Similarity=0.146  Sum_probs=113.0

Q ss_pred             HHHHHCCCCEEEEECC--------CHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCC---------CCCHHHHHHHHH
Q ss_conf             9999869989999167--------9877899999998557233211244----544334---------467889988531
Q gi|254780215|r   23 MRAHQANVLKMIAIAI--------KVKDFVPLIKLCQDYPSSIFCSVGT----HPCHAH---------EENEVLVDELVC   81 (262)
Q Consensus        23 ~~a~~~gv~~~i~~~~--------~~~~~~~~~~l~~~~p~~i~~a~Gi----HP~~~~---------~~~~~~~~~l~~   81 (262)
                      .++..+|++.++.++.        .+.....+.+.+++.+-..+.+-++    +.....         ......+++...
T Consensus       114 ~E~l~sG~TT~~d~~~~~~~~~~~~~~~~~~~~~a~~e~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  193 (480)
T PRK06151        114 AQLLRNGITTAAPIASLFYRQWAETVAEFAAAAEAAGELGLRVYLGPAYRSGGSVLEADGRLRPVFDEARGLAGLDEAIA  193 (480)
T ss_pred             HHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99996598887522332235655445549999999998098699952422776200368877886414558889999999


Q ss_pred             HCC------CCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHH-----------HHHHHHH
Q ss_conf             001------33321004467755332211102467899998766420442033000233357-----------9998531
Q gi|254780215|r   82 LAS------HPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDM-----------AAILQEE  144 (262)
Q Consensus        82 l~~------~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~-----------l~iL~~~  144 (262)
                      +..      ++.+.  +-++...-..-     -.+.+++..++|+++++|+.+|+-....|.           ++.|.+.
T Consensus       194 ~~~~~~~~~~~~v~--~~~ap~~~~t~-----s~e~l~~~~~~A~e~g~~i~~Hl~E~~~E~~~~~~~~G~~pv~~l~~l  266 (480)
T PRK06151        194 FIKRVDGAHNDLVR--GMLAPDRVETC-----TVDLLRRTAAAARELGVPVRLHCCQSVIEVETVRRLHGTTPLEWLHSV  266 (480)
T ss_pred             HHHHHHCCCCCEEE--EEEECCCCCCC-----CHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHC
T ss_conf             99985145898278--99837877778-----999999999999976996898603671589999998599989999970


Q ss_pred             HHCCCCCCCCEECCCCH-HHHHHHHCCCCEEECCCCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             00036753311214640-2344321035202023322113332---2333321056671798307866787776887588
Q gi|254780215|r  145 MKKGPFPFVIHCFSSSQ-KLADICLELGGYISFTGMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNE  220 (262)
Q Consensus       145 ~~~~~~~~i~H~FsG~~-~~~~~~l~~g~y~S~~g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~  220 (262)
                      .--++.-...||---+. +.++.+.+.|..++.+|...++.+.   .++++.+ ... ++-|=||+.   |.       .
T Consensus       267 GlL~~~~~~aH~v~ltde~di~lla~~g~~vah~P~Sn~~lg~g~~pv~~~~~-~Gv-~v~LGTD~~---~~-------d  334 (480)
T PRK06151        267 GLLSPRLIIPHGTYISGEPDLALYAEHGVSIVHCPLVSARRGSALNSFGRYRE-AGI-NLAMGTDTW---PP-------D  334 (480)
T ss_pred             CCCCCCEEEEEEEEECCHHHHHHHHHCCCEEEECHHHHHHCCCCCCCHHHHHH-CCC-CEEECCCCC---CC-------C
T ss_conf             87667647888754087699999986397599885778744899865999985-599-666616999---98-------7


Q ss_pred             HHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             244999999999872-----899899999999999998425
Q gi|254780215|r  221 PAYVVNTAKALAKEK-----DVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       221 P~~i~~~~~~iA~i~-----~~~~eei~~~~~~N~~~~f~~  256 (262)
                      ...-.+.+-.+++..     .++.+++.+..+.|.-|.+|+
T Consensus       335 m~~~mr~a~~~~r~~~~~~~~~~~~~~l~mAT~~GArALg~  375 (480)
T PRK06151        335 MLMNMRVGLYLGRVMEGDLDAASSADLFDAATLGGARALGR  375 (480)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             79999999999999739999899999999999999998289


No 75 
>PRK09236 dihydroorotase; Reviewed
Probab=97.12  E-value=0.03  Score=35.68  Aligned_cols=84  Identities=24%  Similarity=0.305  Sum_probs=45.4

Q ss_pred             CCCCEEECCCCCCHHH-HHHHHHHHHCCCCCCE-EEEEC-CCCCCCCC-------CCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             0352020233221133-3223333210566717-98307-86678777-------6887588244999999999872899
Q gi|254780215|r  169 ELGGYISFTGMITFPK-YDALRAIARGIPMDRV-LVETD-SPYIVPVS-------CQGKRNEPAYVVNTAKALAKEKDVS  238 (262)
Q Consensus       169 ~~g~y~S~~g~i~~~~-~~~~~e~v~~iPldri-LlETD-sP~l~p~~-------~r~~~n~P~~i~~~~~~iA~i~~~~  238 (262)
                      ..|..+-++|.+-... .+.+.+.++.   ..| .+-|| +|+.....       ..|-..-...++.+.+.+ .-..++
T Consensus       274 ~~~~~~k~~Pplr~~~d~~aL~~al~~---g~id~I~sDHaP~~~~~K~~~~~~a~~G~~gle~~lp~~l~~v-~~g~ls  349 (444)
T PRK09236        274 RLGNLIKCNPAIKTASDREALRQALAN---GRIDVIATDHAPHTWEEKQGPYFQAPSGLPLVQHALVALLELV-HEGKLS  349 (444)
T ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCCCHHHCCCCHHHCCCCCCCHHHHHHHHHHHH-HHCCCC
T ss_conf             449710136875856779999999747---9679997688776776724884019998416999999999999-808746


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999998425
Q gi|254780215|r  239 YEDLMEETTKNALKLFSK  256 (262)
Q Consensus       239 ~eei~~~~~~N~~~~f~~  256 (262)
                      ++++.+.+..|.-++||-
T Consensus       350 l~~~v~~~s~nPA~i~GL  367 (444)
T PRK09236        350 LEQVVEKTAHAPAELFAI  367 (444)
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             999999985769998498


No 76 
>PRK07583 cytosine deaminase; Validated
Probab=97.01  E-value=0.01  Score=38.81  Aligned_cols=216  Identities=14%  Similarity=0.129  Sum_probs=100.1

Q ss_pred             HHHHHHCCCCEEEE---E--CCCHHHHHHHHHHHHHCCCCCCC-CCCCCCCCC--CCCCHHHHHHHHHHCCCCCCCEECC
Q ss_conf             99999869989999---1--67987789999999855723321-124454433--4467889988531001333210044
Q gi|254780215|r   22 IMRAHQANVLKMIA---I--AIKVKDFVPLIKLCQDYPSSIFC-SVGTHPCHA--HEENEVLVDELVCLASHPRVVAIGE   93 (262)
Q Consensus        22 i~~a~~~gv~~~i~---~--~~~~~~~~~~~~l~~~~p~~i~~-a~GiHP~~~--~~~~~~~~~~l~~l~~~~~~~aIGE   93 (262)
                      ++.+...|+..+=.   +  ......|+-.+++.++|.+.+-. .+.+=|...  ........+.   ......+  +| 
T Consensus       128 l~~a~a~Gtt~iRTHvDv~~~~~~~~~e~~~~lr~~~~~~i~lq~VA~~p~~~~~~~~~~~L~~~---~~~~g~v--vG-  201 (437)
T PRK07583        128 LRCAYAHGTAAIRTHLDSFGPQAAISWEVFAELREAWAGRITLQAVSLVPLDYYLTDAGERLADL---VAEAGGL--LG-  201 (437)
T ss_pred             HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHH---HHHHCCE--EC-
T ss_conf             99999708747999842558840458999999999832660454564207533478279999999---9971984--73-


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH---HHHHHHHHHHHHC--CCCCC-CCEECC-CC--HHHH
Q ss_conf             67755332211102467899998766420442033000233---3579998531000--36753-311214-64--0234
Q gi|254780215|r   94 TGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD---DDMAAILQEEMKK--GPFPF-VIHCFS-SS--QKLA  164 (262)
Q Consensus        94 iGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~---~~~l~iL~~~~~~--~~~~~-i~H~Fs-G~--~~~~  164 (262)
                       |+++..  .+.+.   ....-++||.++|++|=+|+=...   ...++.+-+....  ..-++ +=|||+ |.  .+.+
T Consensus       202 -Gv~~~~--~d~~~---~l~~vf~lA~~~g~~vDiHlde~~d~~~~~l~~la~~t~~~g~~grVt~sH~~sL~~~~~~~~  275 (437)
T PRK07583        202 -GVTYMN--PDLDA---QLDRLFALAAERGLDLDLHVDETGDPASRTLKAVAEAALRNGFEGKVTCGHCCSLAVQPEEQA  275 (437)
T ss_pred             -CCCCCC--CCHHH---HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHCCCHHHH
T ss_conf             -878988--57999---999999999980999532357888717999999999999809998655202345532999999


Q ss_pred             ----HHHHCCCCEEECCCCCC-HH--H----HH------HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             ----43210352020233221-13--3----32------23333210566717983078667877768875882449999
Q gi|254780215|r  165 ----DICLELGGYISFTGMIT-FP--K----YD------ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNT  227 (262)
Q Consensus       165 ----~~~l~~g~y~S~~g~i~-~~--~----~~------~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~  227 (262)
                          ..+.+.|.-+--.|... |-  +    ..      .++++...  -=++-+=||+-.=.-.||.  ...|.   .+
T Consensus       276 ~~~~~~lA~agi~vvslP~~nl~Lq~R~~~~~P~~Rgv~pv~eL~~a--GV~Valg~Dni~Dpw~P~G--~gDmL---e~  348 (437)
T PRK07583        276 QETLALVAEAGIAIVSLPMCNLYLQDRQPGRTPRWRGVTLVHELKAA--GIPVAFASDNCRDPFYAYG--DHDML---EV  348 (437)
T ss_pred             HHHHHHHHHCCCCEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHHC--CCEEEEECCCCCCCCCCCC--CCCHH---HH
T ss_conf             99999999839948975652200036677778876887786999978--9818993798878877688--98899---99


Q ss_pred             HHHHHHHH--CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999872--899899999999999998425
Q gi|254780215|r  228 AKALAKEK--DVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       228 ~~~iA~i~--~~~~eei~~~~~~N~~~~f~~  256 (262)
                      +.....+-  +.+.++....++.|.-+..|.
T Consensus       349 ~~~a~~~~~ld~~~~~al~~iT~~~A~~lgl  379 (437)
T PRK07583        349 FREAVRILHLDHPYDDWPAAVTTTPADIMGL  379 (437)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCHHHHHHCCC
T ss_conf             9999999744811999999854239987599


No 77 
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=96.96  E-value=0.042  Score=34.73  Aligned_cols=238  Identities=18%  Similarity=0.183  Sum_probs=102.0

Q ss_pred             EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             16861388875--6522689999999986998999916------798778999999985572332112445443344678
Q gi|254780215|r    2 LIDTHCHLLLP--DFDEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE   73 (262)
Q Consensus         2 ~iD~H~HL~~~--~~~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~   73 (262)
                      +||.|+|+..+  ...+|++.--..|...|+..++.+-      .+.+.+....+.++..   .++-+|+|.--. ..+.
T Consensus         8 ~iD~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~---~~~d~~~~~~~~-~~~~   83 (344)
T cd01316           8 LIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAK---ARCDYAFSIGAT-STNA   83 (344)
T ss_pred             EEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCC---CCCCEEEEEEEC-CCCH
T ss_conf             880057779999877464999999998479779977999989979999999999974317---732112688852-6767


Q ss_pred             HHHHHHHHHCCCCCCCEECCCC----CCC----------CCCCCC--CHHHHHHHHHHHHHHHHCCCCC-EEECHHHHHH
Q ss_conf             8998853100133321004467----755----------332211--1024678999987664204420-3300023335
Q gi|254780215|r   74 VLVDELVCLASHPRVVAIGETG----LDR----------YHNAHT--IEEQKVVFLRHIEASRITGIPL-VIHSRSADDD  136 (262)
Q Consensus        74 ~~~~~l~~l~~~~~~~aIGEiG----LD~----------~~~~~~--~e~Q~~vF~~ql~lA~e~~~pv-~iH~r~a~~~  136 (262)
                      ..+.++......-.+. ..+..    +|.          +....+  .+.......+-+.+|+..+.++ +.|.  +-.+
T Consensus        84 ~~l~~l~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~aE~~~~~~~l~la~~~~~~lHi~Hi--St~~  160 (344)
T cd01316          84 ATVGELASEAVGLKFY-LNETFSTLILDKITAWASHFNAWPSTKPIVTHAKSQTLAAVLLLASLHNRSIHICHV--SSKE  160 (344)
T ss_pred             HHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC--CCHH
T ss_conf             8999987546838999-635563577779999999986364569731422389999999999987998999946--8877


Q ss_pred             HHHHHHHHHHCCC---CCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH-HHHHHHHHHCCCCCCEEEEEC-CCCCCC
Q ss_conf             7999853100036---75331121464023443210352020233221133-322333321056671798307-866787
Q gi|254780215|r  137 MAAILQEEMKKGP---FPFVIHCFSSSQKLADICLELGGYISFTGMITFPK-YDALRAIARGIPMDRVLVETD-SPYIVP  211 (262)
Q Consensus       137 ~l~iL~~~~~~~~---~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~-~~~~~e~v~~iPldriLlETD-sP~l~p  211 (262)
                      .++++++...++.   .-+..|-..-+.+...   +.++  -++|.+.-+. .+.+.+.+..  .|  .+-|| +|+-..
T Consensus       161 ~v~lI~~ak~~G~~Vt~Et~ph~L~l~~~~~~---~~~~--k~~PPLR~~~d~~aL~~~l~~--ID--~IaSDHaP~~~~  231 (344)
T cd01316         161 EINLIRLAKARGLKVTCEVSPHHLFLSQDDLP---RGQY--EVRPFLPTREDQEALWENLDY--ID--CFATDHAPHTLA  231 (344)
T ss_pred             HHHHHHHHHHCCCCEEEEECHHHHCCCHHHHH---CCCC--CCCCCCCCHHHHHHHHHHHHC--CC--EEECCCCCCCHH
T ss_conf             99999999872897478634554208775763---3598--728899997899999975422--77--897167765765


Q ss_pred             CCCC-----CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             7768-----87588244999999999872899899999999999998425
Q gi|254780215|r  212 VSCQ-----GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       212 ~~~r-----~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      ....     |-..--..++.....+ .-..++++.+.+.+..|--|+||-
T Consensus       232 ~K~~~~~~~G~~GlEt~lp~~~~~v-~~g~lsl~~lv~~~s~nPAki~gl  280 (344)
T cd01316         232 EKTGNKPPPGFPGVETSLPLLLTAV-HEGRLTIEDIVDRLHTNPKRIFNL  280 (344)
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             5022469998562776899999999-839978999999994989997288


No 78 
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=96.95  E-value=0.043  Score=34.63  Aligned_cols=137  Identities=18%  Similarity=0.184  Sum_probs=70.6

Q ss_pred             HHHHHHHCCCCCEE-ECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHH-------HH-HHCCCCEEECCCCCCHHHH
Q ss_conf             98766420442033-000233357999853100036753311214640234-------43-2103520202332211333
Q gi|254780215|r  115 HIEASRITGIPLVI-HSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLA-------DI-CLELGGYISFTGMITFPKY  185 (262)
Q Consensus       115 ql~lA~e~~~pv~i-H~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~-------~~-~l~~g~y~S~~g~i~~~~~  185 (262)
                      .++.+.+.+..+.+ |+....+++.+.+.    .+ .+.+.|+|++-...-       .. +.....|..+-..-.+-..
T Consensus       177 ~i~~~~~~g~~~~~gh~~~~~~~~~~a~~----~g-~~~~~H~~~~~~~~~~r~~~~~~~~~~~~~~~~e~i~dg~h~~~  251 (374)
T cd00854         177 LIRYLVERGIIVSIGHSDATYEQAVAAFE----AG-ATHVTHLFNAMSPLHHREPGVVGAALSDDDVYAELIADGIHVHP  251 (374)
T ss_pred             HHHHHHHCCCEEEECCCCCCHHHHHHHHH----CC-CCEEEEECCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf             99999976996750555477999999998----49-97898603355722345753677876089833889605526699


Q ss_pred             HHHHHHHHCCCCCCEEEEECCCC---CCCCCCC--CC------------C----CCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             22333321056671798307866---7877768--87------------5----88244999999999872899899999
Q gi|254780215|r  186 DALRAIARGIPMDRVLVETDSPY---IVPVSCQ--GK------------R----NEPAYVVNTAKALAKEKDVSYEDLME  244 (262)
Q Consensus       186 ~~~~e~v~~iPldriLlETDsP~---l~p~~~r--~~------------~----n~P~~i~~~~~~iA~i~~~~~eei~~  244 (262)
                      ..++.+.+..|.+++.+-||+..   +.+..+.  +.            .    .....+...++.+.+.-+++.+++.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~td~~~a~g~~~~~~~~~~~~~~~~~~~~~l~~g~~ag~~~~l~~~~~~~v~~~gl~~~~al~  331 (374)
T cd00854         252 AAVRLAYRAKGADKIVLVTDAMAAAGLPDGEYELGGQTVTVKDGVARLADGTLAGSTLTMDQAVRNMVKWGGCPLEEAVR  331 (374)
T ss_pred             HHHHHHHHHCCCCCEEEEECCHHHCCCCCCEEEECCCEEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             99999997368774899704444348998716506816798768677158970352310999999999970999999999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999998425
Q gi|254780215|r  245 ETTKNALKLFSK  256 (262)
Q Consensus       245 ~~~~N~~~~f~~  256 (262)
                      ..+.|.-|+||.
T Consensus       332 ~aT~npAk~lgl  343 (374)
T cd00854         332 MASLNPAKLLGL  343 (374)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999999699


No 79 
>PRK09248 putative hydrolase; Validated
Probab=96.85  E-value=0.031  Score=35.56  Aligned_cols=39  Identities=21%  Similarity=0.219  Sum_probs=27.6

Q ss_pred             CEEEEECCCCCH-HHHCCHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             916861388875-652268999999998699899991679
Q gi|254780215|r    1 MLIDTHCHLLLP-DFDEDRHDVIMRAHQANVLKMIAIAIK   39 (262)
Q Consensus         1 M~iD~H~HL~~~-~~~~d~~~~i~~a~~~gv~~~i~~~~~   39 (262)
                      +++|.|+|-... .-.+.+++.++.|.+.|++.+...-..
T Consensus         3 ~~~DlH~HT~~S~ha~~ti~E~~~aA~~~Gl~~i~iTDH~   42 (246)
T PRK09248          3 YLVDTHTHTIASGHAYSTLHENAAEAKQKGIKLFAITDHG   42 (246)
T ss_pred             CCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf             4558577888768997969999999998699689989899


No 80 
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=96.75  E-value=0.061  Score=33.64  Aligned_cols=65  Identities=15%  Similarity=0.269  Sum_probs=42.4

Q ss_pred             HHCCCCCCEEEEECCCCCCCCCCCCC------CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             21056671798307866787776887------588244999999999872899899999999999998425
Q gi|254780215|r  192 ARGIPMDRVLVETDSPYIVPVSCQGK------RNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       192 v~~iPldriLlETDsP~l~p~~~r~~------~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      ...+|.+++.+=||+--..|.-.+..      ......+...+..+.+.-++|++++.+.++.|.-++||-
T Consensus       271 ~~~i~~~~~~~~~d~~~~~~~~~~~g~~~~~~~g~~~t~~~~~~~~v~~g~l~le~av~~~T~NPAk~lgl  341 (387)
T cd01308         271 EQGVPLERITFSSDGNGSLPKFDENGNLVGLGVGSVDTLLREVREAVKCGDIPLEVALRVITSNVARILKL  341 (387)
T ss_pred             HCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             74998643999946999866410148551367675888999999999976999999999985899997499


No 81 
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=96.61  E-value=0.076  Score=33.00  Aligned_cols=118  Identities=16%  Similarity=0.171  Sum_probs=59.5

Q ss_pred             EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEE------CCCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCC
Q ss_conf             1686138887565--2268999999998699899991------6798778999999985572-33211244544334467
Q gi|254780215|r    2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAI------AIKVKDFVPLIKLCQDYPS-SIFCSVGTHPCHAHEEN   72 (262)
Q Consensus         2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~------~~~~~~~~~~~~l~~~~p~-~i~~a~GiHP~~~~~~~   72 (262)
                      +||.|.|+..+-+  .++++.--..|...|+..++..      .++++.+...++.+++..- .+.+..|+=.++.    
T Consensus        55 ~ID~HVH~repg~~~ke~~~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~----  130 (430)
T COG0044          55 LVDLHVHFREPGFEHKETFETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNL----  130 (430)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCC----
T ss_conf             7566773389984135568769999975892699977789999887999999998640375478999876412651----


Q ss_pred             HHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH
Q ss_conf             8899885310013332100446775533221110246789999876642044203300023
Q gi|254780215|r   73 EVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA  133 (262)
Q Consensus        73 ~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a  133 (262)
                       ... ++.....        ++|.=-|-+.........++++-++.|++++.++++||-+.
T Consensus       131 -~~~-~~~~~~~--------~~g~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~  181 (430)
T COG0044         131 -GKL-ELTERGV--------EAGFKGFMDDSTGALDDDVLEEALEYAAELGALILVHAEDD  181 (430)
T ss_pred             -HHH-HHHHHHH--------CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             -047-7664211--------15469995698765688999999999985598699971780


No 82 
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type; InterPro: IPR004722   Dihydroorotase belongs to MEROPS peptidase family M38 (clan MJ), where it is classified as a non-peptidase homologue. DHOase catalyses the third step in the de novo biosynthesis of pyrimidine, the conversion of ureidosuccinic acid (N-carbamoyl-L-aspartate) into dihydroorotate. Dihydroorotase binds a zinc ion which is required for its catalytic activity .   In bacteria, DHOase is a dimer of identical chains of about 400 amino-acid residues (gene pyrC). In higher eukaryotes, DHOase is part of a large multi-functional protein known as 'rudimentary' in Drosophila melanogaster and CAD in mammals and which catalyzes the first three steps of pyrimidine biosynthesis . The DHOase domain is located in the central part of this polyprotein. In yeasts, DHOase is encoded by a monofunctional protein (gene URA4). However, a defective DHOase domain  is found in a multifunctional protein (gene URA2) that catalyzes the first two steps of pyrimidine biosynthesis.   The comparison of DHOase sequences from various sources shows  that there are two highly conserved regions. The first located in the N-terminal extremity contains two histidine residues suggested  to be involved in binding the zinc ion. The second is found in the C-terminal part. Members of this family of proteins are predicted to adopt a TIM barrel fold .   Dihydroorotase 'multifunctional complex type' 3.5.2.3 from EC, in contrast to the homodimeric type of dihydroorotase found in Escherichia coli, tends to appear in a large multifunctional complex with aspartate transcarbamoylase. Homologous domains appear in multifunctional proteins of higher eukaryotes. In some species, including Pseudomonas putida and Pseudomonas aeruginosa, this protein is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase (ATCase). In these species, a second, active dihydroorotase is also present..
Probab=96.57  E-value=0.0087  Score=39.26  Aligned_cols=249  Identities=16%  Similarity=0.158  Sum_probs=133.2

Q ss_pred             EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCC----------------CCC
Q ss_conf             16861388875--6522689999999986998999916------79877899999998557----------------233
Q gi|254780215|r    2 LIDTHCHLLLP--DFDEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYP----------------SSI   57 (262)
Q Consensus         2 ~iD~H~HL~~~--~~~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p----------------~~i   57 (262)
                      +||.|.||-.+  ++-+|++.=-.-|..-|+..++.+-      .+.+.+.+.++-+++-.                ..=
T Consensus        47 ~iD~HVHlRdpg~eyKEdi~~G~~AA~~GG~t~V~dMPNT~PP~d~~~~~~~~~~~~~~~~GvnahhqPPGdPqaenrPd  126 (459)
T TIGR00857        47 LIDLHVHLRDPGEEYKEDIESGSKAAIHGGFTTVADMPNTKPPIDTPETLERKLQRLKKKSGVNAHHQPPGDPQAENRPD  126 (459)
T ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             04777621889874113188999997558715899857431377898999999997410146423468555875355888


Q ss_pred             CCCCCCCCCCCCCCCHHHHHH---HHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH-
Q ss_conf             211244544334467889988---5310013332100446775533221110246789999876642044203300023-
Q gi|254780215|r   58 FCSVGTHPCHAHEENEVLVDE---LVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA-  133 (262)
Q Consensus        58 ~~a~GiHP~~~~~~~~~~~~~---l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a-  133 (262)
                      -..+=+|||..-..... .++   +.+.-.-..+-++|++=.    +......+.....+-|+.|.+.++|+.+||-+- 
T Consensus       127 sa~vd~~~~~~vt~~~~-gk~~~~~~~~~~~~~~~~~G~~F~----~d~~~~~~~~~~~~~le~a~~~Gv~~~~HaE~~~  201 (459)
T TIGR00857       127 SALVDVLLYAGVTKGNK-GKEIVRLTEAYELKEAGAVGEVFI----DDGSEVLDILSMRKALEYAAELGVLIVLHAEDPD  201 (459)
T ss_pred             CCEEEEEEEEEEECCCC-CCCEEEECCHHHHHCCCEEEEEEE----ECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             52554578645704445-551011125056510643689876----4552342034567899988557936998258867


Q ss_pred             --------------------------H----HHHHHHHHHHHHC-CCCCCCC-EECC-CCHHHHHHHHCC--CCE--EEC
Q ss_conf             --------------------------3----3579998531000-3675331-1214-640234432103--520--202
Q gi|254780215|r  134 --------------------------D----DDMAAILQEEMKK-GPFPFVI-HCFS-SSQKLADICLEL--GGY--ISF  176 (262)
Q Consensus       134 --------------------------~----~~~l~iL~~~~~~-~~~~~i~-H~Fs-G~~~~~~~~l~~--g~y--~S~  176 (262)
                                                +    .++++.++.+... ....++| |-=| .+.+.++++-+.  |..  +.+
T Consensus       202 l~~~~~~~~~~~~~~~~gl~~rp~~aE~~~va~~~~l~~~~g~~nkkPhvHicHiSTk~~~~~i~~~k~~~~Gi~~T~EV  281 (459)
T TIGR00857       202 LIAGGLVEYEGRSAAALGLKARPPEAEEVAVARLLELAKHAGCPNKKPHVHICHISTKESLELIKKAKKQLKGIKITAEV  281 (459)
T ss_pred             HHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             73267421223324753678882033799999999999861888888843699865001588999876400462389984


Q ss_pred             CCC-CCHHH--HHH--------HHHHHHCCCC-----CCE------------EEEEC-CCCCCCCCCCCCCCC-H-----
Q ss_conf             332-21133--322--------3333210566-----717------------98307-866787776887588-2-----
Q gi|254780215|r  177 TGM-ITFPK--YDA--------LRAIARGIPM-----DRV------------LVETD-SPYIVPVSCQGKRNE-P-----  221 (262)
Q Consensus       177 ~g~-i~~~~--~~~--------~~e~v~~iPl-----dri------------LlETD-sP~l~p~~~r~~~n~-P-----  221 (262)
                      ||- +...+  -..        +-..+|.-|.     ||+            .+=|| ||....+....-.+- |     
T Consensus       282 tPHHLlL~~~~~~~GlPPhtP~~~~~~kvNPPLR~~eDr~aL~~~~~~G~ID~iAsDHAPH~~eEK~~~~~~appG~pgl  361 (459)
T TIGR00857       282 TPHHLLLSEEDVARGLPPHTPPLDTNLKVNPPLREEEDRLALIEGLKDGIIDIIASDHAPHTLEEKLKEVAAAPPGIPGL  361 (459)
T ss_pred             CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHCCHHHCCCCCCHH
T ss_conf             67300178688826887888888885013779888535999977663472017855786421265502155467887338


Q ss_pred             -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             -4499999999987289989999999999999842
Q gi|254780215|r  222 -AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS  255 (262)
Q Consensus       222 -~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~  255 (262)
                       ..++.+++.+.+=.=+|...+.+.+..|=.|.||
T Consensus       362 e~~~p~~l~~~~kg~lis~~~~~~~~s~nParIfg  396 (459)
T TIGR00857       362 ETVLPLLLQLLVKGNLISLKDLVRMLSINPARIFG  396 (459)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHCC
T ss_conf             88999999997548732689999998526551122


No 83 
>PRK04250 dihydroorotase; Provisional
Probab=96.56  E-value=0.082  Score=32.78  Aligned_cols=241  Identities=15%  Similarity=0.133  Sum_probs=117.6

Q ss_pred             EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             168613888756--522689999999986998999916------798778999999985572332112445443344678
Q gi|254780215|r    2 LIDTHCHLLLPD--FDEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE   73 (262)
Q Consensus         2 ~iD~H~HL~~~~--~~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~   73 (262)
                      +||.|+|+..+.  ..+++..--..|...|+..++...      .+++.+....+.++.   ..+.-+++|........+
T Consensus        54 ~ID~hvH~~~pg~~~ke~~~sgs~AAa~GGvTtv~~mPnt~p~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~  130 (408)
T PRK04250         54 LIDVHVHLRDFEEKYKETIETGTKAALHGGITTVFDMPNTKPPIMDEKTLKLREGIFEK---KSYADYALGFLLAGNCGE  130 (408)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC---CCEEEEEEEEEEECCCCH
T ss_conf             89645067888853034688789999838935997678899986879999999998476---975788307996077303


Q ss_pred             --HHHHHHHH------------------HCCCCCCCEECCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCCCE-EEC
Q ss_conf             --89988531------------------001333210044677553--3221110246789999876642044203-300
Q gi|254780215|r   74 --VLVDELVC------------------LASHPRVVAIGETGLDRY--HNAHTIEEQKVVFLRHIEASRITGIPLV-IHS  130 (262)
Q Consensus        74 --~~~~~l~~------------------l~~~~~~~aIGEiGLD~~--~~~~~~e~Q~~vF~~ql~lA~e~~~pv~-iH~  130 (262)
                        .....+.+                  +.....++++-.=.-+..  ....+.+.......+-+.||+..+-|+- .|.
T Consensus       131 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~vHaEd~~l~~~~~~rP~~aE~~ai~r~~~la~~tg~~lhi~Hv  210 (408)
T PRK04250        131 AKPVKADFYKIFMGASTGGIYSENFEEDYACAPDIVSVHAEDPEIIRRYPERPPEAEVRAIKKALEAAKKLKKPLHICHV  210 (408)
T ss_pred             HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             67888877632303466506578799999865997899579978884489999999999999999999984996999945


Q ss_pred             HHHHHHHHHHHHHHHHCCC-CCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH-HHHHHHHHHCCCCCCEEEEEC-CC
Q ss_conf             0233357999853100036-75331121464023443210352020233221133-322333321056671798307-86
Q gi|254780215|r  131 RSADDDMAAILQEEMKKGP-FPFVIHCFSSSQKLADICLELGGYISFTGMITFPK-YDALRAIARGIPMDRVLVETD-SP  207 (262)
Q Consensus       131 r~a~~~~l~iL~~~~~~~~-~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~-~~~~~e~v~~iPldriLlETD-sP  207 (262)
                      --+  +.++++.+....+. .-+..|...=+.+..    +.|-++-++|.+--+. .+.+.+.++.  .|  .+=|| +|
T Consensus       211 Ss~--~~l~~I~~a~~~~vt~Et~ph~L~l~~~~~----~~~~~~k~~PPLRs~~dr~aL~~~l~~--Id--~i~SDH~P  280 (408)
T PRK04250        211 STK--DGLKEILKSNLPWVSFEVTPHHLFLTRKDY----ERNPLLKVYPPLRSEEDRRALWENFSR--IP--IIASDHAP  280 (408)
T ss_pred             CCH--HHHHHHHHHCCCCEEEEEEHHHHHCCHHHH----CCCCCEEECCCCCCHHHHHHHHHHHCC--CC--EEEECCCC
T ss_conf             889--999999984179839998122644783775----756874978999978889999986268--88--89836888


Q ss_pred             CCCCCCCCCCC---CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             67877768875---88244999999999872899899999999999998425
Q gi|254780215|r  208 YIVPVSCQGKR---NEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       208 ~l~p~~~r~~~---n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      +.....-.+..   .--..++...+ +..-..++.+++.+.+..|--++||.
T Consensus       281 ~~~e~K~~~~~G~~glEt~lpl~~~-~v~~g~isl~~lv~~~s~nPAki~gl  331 (408)
T PRK04250        281 HTLEDKEAGAAGLPGLETEVALLLD-AANKGMITLKDIVEKMHINPARIFGI  331 (408)
T ss_pred             CCHHHHCCCCCCCCHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHCHHHHHCC
T ss_conf             8978834477898708889999999-99817988999999974275996497


No 84 
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=96.53  E-value=0.02  Score=36.83  Aligned_cols=136  Identities=15%  Similarity=0.089  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHH-----------HHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf             67899998766420442033000233357999-----------8531000367533112146402344321035202023
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAI-----------LQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT  177 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~i-----------L~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~  177 (262)
                      .+.++...++|.++++|+.+|.-....|+-..           |.+..--++.-...||---+.+.++.+.+.|..++.+
T Consensus       204 ~~~l~~~~~~a~~~~~~~~~HlaE~~~e~~~~~~~~g~~~v~~l~~~GlL~~~~~~aH~v~l~d~ei~~la~~g~~v~hc  283 (442)
T PRK07203        204 DAGLEKCREAVKGTGRGLHIHVAEGLYDVSDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSKDEIDLLNETDTFVVHN  283 (442)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEHHCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEC
T ss_conf             99999999999864994775030370889999987199999999844888999688725169999999999839847988


Q ss_pred             CCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHH
Q ss_conf             32211333---22333321056671798307866787776887588244999999999872899----899999999999
Q gi|254780215|r  178 GMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVS----YEDLMEETTKNA  250 (262)
Q Consensus       178 g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~----~eei~~~~~~N~  250 (262)
                      |.....-+   ..++++++.  -=++-|=||++-  .        ..-.-.+++..+.+....+    ..++....+.|.
T Consensus       284 P~Sn~~lg~G~~p~~~~~~~--Gv~vgLGTDg~~--~--------dm~~emr~a~~~~r~~~~d~~~~~~~~~~~at~~g  351 (442)
T PRK07203        284 PESNMGNAVGYNPVLSMIKN--GILLGLGTDGYT--S--------DMFESMKVANFKHKHALKDGGPLWPESFAMLFENN  351 (442)
T ss_pred             CHHHHHCCCCCCCHHHHHHC--CCCEEEECCCCC--C--------CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             10264267788889999977--997899689987--6--------79999999999975523798878099999999999


Q ss_pred             HHHHHH
Q ss_conf             998425
Q gi|254780215|r  251 LKLFSK  256 (262)
Q Consensus       251 ~~~f~~  256 (262)
                      -+..++
T Consensus       352 a~~~~~  357 (442)
T PRK07203        352 NEIASR  357 (442)
T ss_pred             HHHHHH
T ss_conf             999976


No 85 
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=96.48  E-value=0.084  Score=32.71  Aligned_cols=156  Identities=18%  Similarity=0.182  Sum_probs=83.5

Q ss_pred             CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHH--------HH----HHHHHHHHHCCCCCCC--CCCCCCC
Q ss_conf             91686138887565226899999999869989999167987--------78----9999999855723321--1244544
Q gi|254780215|r    1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVK--------DF----VPLIKLCQDYPSSIFC--SVGTHPC   66 (262)
Q Consensus         1 M~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~--------~~----~~~~~l~~~~p~~i~~--a~GiHP~   66 (262)
                      |.+|.|.|.....-..+..+.+++|.+.|...+..+-..+.        ..    .....+.+.|.-.|+.  -+++.|-
T Consensus         1 ~~~D~H~HT~~sdg~~~~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~G~E~~~~~~   80 (237)
T COG1387           1 MKIDLHTHTVFSDGEATPEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYDIKILIGIEVDILPD   80 (237)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
T ss_conf             98432125664367789999999999739965999636644345776889999999999998644840476567875178


Q ss_pred             CCCC-----------------------C-CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             3344-----------------------6-788998853100133321004467755332211102467899998766420
Q gi|254780215|r   67 HAHE-----------------------E-NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRIT  122 (262)
Q Consensus        67 ~~~~-----------------------~-~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~  122 (262)
                      .--+                       . .....+.+.....++.+-.||=.|+.... ......-....++.+++|.+.
T Consensus        81 ~~~d~~~~~~~~lD~vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  159 (237)
T COG1387          81 GSLDFLDEILKELDYVIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLG-RIDRGAYKEDIEELIELAEKN  159 (237)
T ss_pred             CCCCCCHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCEEE-EECCCCCHHHHHHHHHHHHHH
T ss_conf             7756445467436959999715876663699999999999738875477268875132-322452057899999999985


Q ss_pred             CCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCC
Q ss_conf             442033000233357999853100036753311214640234432103520202332
Q gi|254780215|r  123 GIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGM  179 (262)
Q Consensus       123 ~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~  179 (262)
                      +..+-|++|...                      ...+.+.++.+.+.|++|+++..
T Consensus       160 g~aleins~~~~----------------------~~~~~~~~~~~~e~G~~~~i~tD  194 (237)
T COG1387         160 GKALEINSRPGR----------------------LDPNSEILRLARELGVKLAIGTD  194 (237)
T ss_pred             CCEEEECCCCCC----------------------CCCCHHHHHHHHHCCCEEEEECC
T ss_conf             968985388566----------------------67609999999971957997355


No 86 
>PRK09228 guanine deaminase; Provisional
Probab=96.35  E-value=0.11  Score=31.96  Aligned_cols=138  Identities=15%  Similarity=0.042  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHC-CCCCEEECHHHHHHH-------------HHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEE
Q ss_conf             7899998766420-442033000233357-------------99985310003675331121464023443210352020
Q gi|254780215|r  110 VVFLRHIEASRIT-GIPLVIHSRSADDDM-------------AAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYIS  175 (262)
Q Consensus       110 ~vF~~ql~lA~e~-~~pv~iH~r~a~~~~-------------l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S  175 (262)
                      +.++..-++|.++ +.++..|+-....|+             ++++.+..--.+.-...||---+.+.++.+.+.|..++
T Consensus       210 e~l~~~~~la~~~~~~~i~~HlaE~~~E~~~~~~l~~~~~~~l~~~~~~GlL~~~~~~aH~v~l~d~ei~~la~~g~~v~  289 (429)
T PRK09228        210 EQLEAAGALAREHPDVYVQTHLSENLDEIAWVKELFPEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAETGAAIA  289 (429)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
T ss_conf             99999999998779977883304676799999997278875102677628877880576466067799999874397510


Q ss_pred             CCCCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
Q ss_conf             23322113332---2333321056671798307866787776887588244999999999872--899899999999999
Q gi|254780215|r  176 FTGMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEK--DVSYEDLMEETTKNA  250 (262)
Q Consensus       176 ~~g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~--~~~~eei~~~~~~N~  250 (262)
                      .+|.....-..   .++++.+.  -=++-+=||++--.       ...+......+..+++..  .++..++.+..+.|.
T Consensus       290 ~~P~Sn~~lg~g~~p~~~l~~~--Gv~v~LGTD~~~~~-------s~~~~~~m~~a~~~~~~~~~~lt~~eaL~~ATi~G  360 (429)
T PRK09228        290 FCPTSNLFLGSGLFDLKRAWAA--GVRVGLATDVGGGT-------SFSMLQTMNEAYKVAQLQGYRLSPFQAFYLATLGG  360 (429)
T ss_pred             ECHHHHHHHCCCCCCHHHHHHC--CCCEEEECCCCCCC-------CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             1632688745888878999746--99379963789999-------81699999999999712699999999999999999


Q ss_pred             HHHHHH
Q ss_conf             998425
Q gi|254780215|r  251 LKLFSK  256 (262)
Q Consensus       251 ~~~f~~  256 (262)
                      -+..|.
T Consensus       361 AraLGl  366 (429)
T PRK09228        361 ARALGL  366 (429)
T ss_pred             HHHHCC
T ss_conf             998489


No 87 
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.27  E-value=0.053  Score=34.03  Aligned_cols=207  Identities=19%  Similarity=0.237  Sum_probs=90.0

Q ss_pred             EEEEECCCC----C-HHHHCCHHHHHHHHHHCCCCEEEEECCCHH-----HHHH----HHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             168613888----7-565226899999999869989999167987-----7899----9999985572332112445443
Q gi|254780215|r    2 LIDTHCHLL----L-PDFDEDRHDVIMRAHQANVLKMIAIAIKVK-----DFVP----LIKLCQDYPSSIFCSVGTHPCH   67 (262)
Q Consensus         2 ~iD~H~HL~----~-~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~-----~~~~----~~~l~~~~p~~i~~a~GiHP~~   67 (262)
                      |||.|||+-    + +...+.--.++..|..+||..+|+++....     ....    +.++-... ...-.-+-+-|-.
T Consensus         1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~-~~~aidl~v~pGQ   79 (254)
T COG4464           1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEIL-KKEAIDLKVLPGQ   79 (254)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHCCCCEECCCC
T ss_conf             945013466787889875899999999999757607951333247766891999999999999888-8626782661686


Q ss_pred             CCCCCHHHHHHHHHH----CCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC-HHHHHHHHHHHH
Q ss_conf             344678899885310----013332100446775533221110246789999876642044203300-023335799985
Q gi|254780215|r   68 AHEENEVLVDELVCL----ASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS-RSADDDMAAILQ  142 (262)
Q Consensus        68 ~~~~~~~~~~~l~~l----~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~-r~a~~~~l~iL~  142 (262)
                      --..+++.++.+.+-    +++.+..-| |--.    +..+...-.-+|+-|+.    -=.|++.|- |.          
T Consensus        80 EIrIt~~vl~~l~~g~I~tindskYlLI-EF~~----~~v~~ya~~lf~elq~k----Gi~PIIAHPERn----------  140 (254)
T COG4464          80 EIRITGDVLDDLDKGIILTINDSKYLLI-EFPM----NHVPRYADQLFFELQSK----GIIPIIAHPERN----------  140 (254)
T ss_pred             EEEECHHHHHHHHCCCCCCCCCCCEEEE-ECCC----CCCHHHHHHHHHHHHHC----CCEEEEECHHHH----------
T ss_conf             6897508887876284340336634999-7468----86224599999999977----950366462567----------


Q ss_pred             HHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCC-CCC--HHHHHHHHHHHHC---CCCCCEEEEECCCCCCCCCCCC
Q ss_conf             310003675331121464023443210352020233-221--1333223333210---5667179830786678777688
Q gi|254780215|r  143 EEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTG-MIT--FPKYDALRAIARG---IPMDRVLVETDSPYIVPVSCQG  216 (262)
Q Consensus       143 ~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g-~i~--~~~~~~~~e~v~~---iPldriLlETDsP~l~p~~~r~  216 (262)
                                  +.+.-++..+..+++.|+|+-++. .+.  |-|  ++++..-.   ..|-. .+-+|+-..      +
T Consensus       141 ------------~~i~kn~~~lyeLid~ga~sQvts~Sl~GlfGK--~ikK~a~~~iE~~L~h-FiASDAHn~------~  199 (254)
T COG4464         141 ------------RAIQKNPYLLYELIDKGAYSQVTSSSLAGLFGK--KIKKFALQLIEANLVH-FIASDAHNV------D  199 (254)
T ss_pred             ------------HHHHHCHHHHHHHHHCCCCEEECHHHHHHHHHH--HHHHHHHHHHHCCCCE-EEECCCCCC------C
T ss_conf             ------------888859699999985562214225767766658--8999999999746312-540334335------7


Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             75882449999999998728998999999999999984
Q gi|254780215|r  217 KRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF  254 (262)
Q Consensus       217 ~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f  254 (262)
                      ++  |-........+.+   ..-.+..+...+|+..+.
T Consensus       200 ~R--~f~~~ea~~~~~k---~~gs~~~~~fi~Na~llv  232 (254)
T COG4464         200 KR--PFHMQEAFHLVTK---KDGSELPEKFIENAELLV  232 (254)
T ss_pred             CC--CCCHHHHHHHHHH---HHHHHHHHHHHHCHHHHH
T ss_conf             88--9338999999987---663433899875789874


No 88 
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=96.26  E-value=0.12  Score=31.65  Aligned_cols=232  Identities=16%  Similarity=0.170  Sum_probs=126.1

Q ss_pred             EEEEECCCCC----H--HHHCCHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHHHCCC-CCCCCCCCC---CCCCC
Q ss_conf             1686138887----5--652268999999998699899991--6798778999999985572-332112445---44334
Q gi|254780215|r    2 LIDTHCHLLL----P--DFDEDRHDVIMRAHQANVLKMIAI--AIKVKDFVPLIKLCQDYPS-SIFCSVGTH---PCHAH   69 (262)
Q Consensus         2 ~iD~H~HL~~----~--~~~~d~~~~i~~a~~~gv~~~i~~--~~~~~~~~~~~~l~~~~p~-~i~~a~GiH---P~~~~   69 (262)
                      |||.|.|=..    .  ...+.+..+.+...+.|+..++..  +.+.+.-.++++-...+-. ..--.+|+|   ||...
T Consensus        54 fID~hihG~gG~~~~D~~~~~~l~~i~~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP~ls~  133 (380)
T COG1820          54 FIDLHIHGGGGADFMDAGSVETLETMAEAHLRHGTTSFLPTLITASLEKIKAALRAIREAIAKGGAQILGIHLEGPFLSP  133 (380)
T ss_pred             EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCH
T ss_conf             78975337674133676478999999998662174224201035999999999999999985468836899841675687


Q ss_pred             ------------CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE-ECHHHHHH
Q ss_conf             ------------46788998853100133321004467755332211102467899998766420442033-00023335
Q gi|254780215|r   70 ------------EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVI-HSRSADDD  136 (262)
Q Consensus        70 ------------~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~i-H~r~a~~~  136 (262)
                                  ..+.+.++++...... -+.-   +-      ..|-..+   -..++....+.+-.+++ |+--.+++
T Consensus       134 ~kkGAh~~~~ir~~~~~~~~~~~~~a~g-~i~~---vT------lAPE~~~---~~e~i~~l~~~giivs~GHS~Atye~  200 (380)
T COG1820         134 EKKGAHNPEYIRPPDPEELEQLIAAADG-LIKL---VT------LAPELDG---TKELIRLLANAGIVVSIGHSNATYEQ  200 (380)
T ss_pred             HHCCCCCHHHCCCCCHHHHHHHHHHCCC-CEEE---EE------ECCCCCC---CHHHHHHHHHCCEEEEECCCCCCHHH
T ss_conf             5546998899079899999999874468-4699---99------8878888---89999999868939971575254999


Q ss_pred             HHHHHHHHHHCCCCCCCCEECCCCHHHHHH-------HHCC-CCEEECC--CCCCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             799985310003675331121464023443-------2103-5202023--32211333223333210566717983078
Q gi|254780215|r  137 MAAILQEEMKKGPFPFVIHCFSSSQKLADI-------CLEL-GGYISFT--GMITFPKYDALRAIARGIPMDRVLVETDS  206 (262)
Q Consensus       137 ~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~-------~l~~-g~y~S~~--g~i~~~~~~~~~e~v~~iPldriLlETDs  206 (262)
                      +.+-++.    + ...+-|.|++-...--+       .++. +.|.++=  |.=..  ..-++-+.|.-+.|||++=|||
T Consensus       201 ~~~a~~~----G-a~~~THlfNaMs~l~hREPGvvGA~L~~~~~~~eiIaDG~HVh--P~~~~ia~~~kg~~~i~LVTDa  273 (380)
T COG1820         201 ARAAFEA----G-ATFVTHLFNAMSGLHHREPGVVGAALDNPDVYAEIIADGVHVH--PAAIRLALKAKGGDKIVLVTDA  273 (380)
T ss_pred             HHHHHHC----C-CCEEEEECCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCC--HHHHHHHHHCCCCCEEEEEECC
T ss_conf             9999970----8-6369860147888788898610434227974899982675069--9999999861588649999715


Q ss_pred             CCCCCCCC--------------CCC--C-------CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66787776--------------887--5-------8824499999999987289989999999999999842
Q gi|254780215|r  207 PYIVPVSC--------------QGK--R-------NEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS  255 (262)
Q Consensus       207 P~l~p~~~--------------r~~--~-------n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~  255 (262)
                        |.+...              ++.  +       ..-..+..-++.+-+.-+++.+|..+-...|--+.+|
T Consensus       274 --m~a~G~~dg~y~lgg~~V~v~~g~~~~~~GtLAGS~Ltm~~avrn~v~~~~~~~~eAv~maS~~PA~~lg  343 (380)
T COG1820         274 --MAAAGLPDGEYILGGQTVTVADGARRLEDGTLAGSTLTMDEAVRNLVEWGGISLAEAVRMASLNPAKALG  343 (380)
T ss_pred             --CCCCCCCCCCEEECCEEEEEECCEEECCCCCEEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf             --5647898851887887899978978878996642225699999999997489999999884134798809


No 89 
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=96.22  E-value=0.068  Score=33.30  Aligned_cols=136  Identities=13%  Similarity=0.058  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHHHHHHH-----------HHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf             67899998766420442033000233357-----------9998531000367533112146402344321035202023
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRSADDDM-----------AAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT  177 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~-----------l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~  177 (262)
                      .+.++..-++|.++++|+.+|+-....|+           ++.|.+..--++.-...||---+.+.++.+.+.|..++.+
T Consensus       203 ~~~l~~~~~~a~~~~~~~~~Hl~E~~~e~~~~~~~~G~~pv~~l~~~GlL~~~~~~aH~v~l~~~ei~lla~~G~~vahc  282 (441)
T TIGR03314       203 DAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELLNETDTFVVHN  282 (441)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHCCCEEEEC
T ss_conf             99999999998755991886311441889999987099889999852888999567447669999999999829828877


Q ss_pred             CCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHH
Q ss_conf             32211333---22333321056671798307866787776887588244999999999872899----899999999999
Q gi|254780215|r  178 GMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVS----YEDLMEETTKNA  250 (262)
Q Consensus       178 g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~----~eei~~~~~~N~  250 (262)
                      |....+-.   ..++++++.  -=++=|=||++-  .        ..-.-.+.+..+.+....+    ..++....+.|.
T Consensus       283 P~Sn~~lg~G~~p~~~~l~~--Gv~v~LGTDg~~--~--------dm~~~mr~a~~~~r~~~~~~~~~~~~~~~~~~~~g  350 (441)
T TIGR03314       283 PESNMGNAVGYNPVLRMFKN--GILLGLGTDGYT--S--------DMFESLKFANFKHKDAGGDLNAAWPESPAMLFENN  350 (441)
T ss_pred             HHHHHHCCCCCCCHHHHHHC--CCCEEEECCCCC--C--------CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             35564257899988999978--998899898986--1--------69999999999977636997667479999999999


Q ss_pred             HHHHHH
Q ss_conf             998425
Q gi|254780215|r  251 LKLFSK  256 (262)
Q Consensus       251 ~~~f~~  256 (262)
                      -+..++
T Consensus       351 ~~~~~~  356 (441)
T TIGR03314       351 NEIAER  356 (441)
T ss_pred             HHHHHH
T ss_conf             999975


No 90 
>TIGR03179 gua_deam guanine deaminase. This enzyme converts guanine to xanthine in the catabolism of guanine. Seed members were included by virtue of their proximity to other genes of the guanine/xanthine/urate/allantoate catabolic pathway. The guanine deaminase in E. coli has been characterized. Eukaryotic sequences were not included in the seed and fall below trusted to this model.
Probab=96.18  E-value=0.13  Score=31.37  Aligned_cols=215  Identities=13%  Similarity=0.034  Sum_probs=107.7

Q ss_pred             HHHHHCCCCEEEEECCCH-HHHHHHHHHHHHCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHH----CCCCCCC-EEC
Q ss_conf             999986998999916798-778999999985572332112445----443344678899885310----0133321-004
Q gi|254780215|r   23 MRAHQANVLKMIAIAIKV-KDFVPLIKLCQDYPSSIFCSVGTH----PCHAHEENEVLVDELVCL----ASHPRVV-AIG   92 (262)
Q Consensus        23 ~~a~~~gv~~~i~~~~~~-~~~~~~~~l~~~~p~~i~~a~GiH----P~~~~~~~~~~~~~l~~l----~~~~~~~-aIG   92 (262)
                      .++.+.|+..+...+... ...+...+-+....-....+.++-    |....+..+..++....+    ...+++. +++
T Consensus       120 ~e~l~~G~TT~~~~~~~~~~~~d~~~~aa~~~g~R~v~g~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  199 (427)
T TIGR03179       120 DELLRNGTTTALVFGSVHKQSVDAFFEEAEARNLRMIAGKVMMDRNAPDYLRDTAESGYDDSKALIARWHGKGRLHYAVT  199 (427)
T ss_pred             HHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             99997697568763144756678999999981970897544415799803205899999999999998548885268984


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCEEECHHHHHHH-------------HHHHHHHHHCCCCCCCCEECC
Q ss_conf             467755332211102467899998766420-442033000233357-------------999853100036753311214
Q gi|254780215|r   93 ETGLDRYHNAHTIEEQKVVFLRHIEASRIT-GIPLVIHSRSADDDM-------------AAILQEEMKKGPFPFVIHCFS  158 (262)
Q Consensus        93 EiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~-~~pv~iH~r~a~~~~-------------l~iL~~~~~~~~~~~i~H~Fs  158 (262)
                         .-+  ..+..+   +.++.--++|+++ +.++-+|+.....++             ++.+.+...-++.-...||--
T Consensus       200 ---p~~--~~~~s~---e~l~~~~~~a~~~~~~~~~~H~ae~~~e~~~~~~~~~~~~~~~~~~~~~GlLg~~~~~aH~v~  271 (427)
T TIGR03179       200 ---PRF--APTSTP---EQLEAAGELLREHPDVFMQTHLSENLDEIAWVRELFPEARDYLDVYDRYGLLGPRSVLAHAIH  271 (427)
T ss_pred             ---CCC--CCCCCH---HHHHHHHHHHHHCCCCEEEEHHHCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHEEEC
T ss_conf             ---675--885789---999999999986689757742523521689999973999502335776098766422010032


Q ss_pred             CCHHHHHHHHCCCCEEECCCCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH--HHHHHHHH
Q ss_conf             6402344321035202023322113332---233332105667179830786678777688758824499--99999998
Q gi|254780215|r  159 SSQKLADICLELGGYISFTGMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVV--NTAKALAK  233 (262)
Q Consensus       159 G~~~~~~~~l~~g~y~S~~g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~--~~~~~iA~  233 (262)
                      -+.+.++.+.+.|..++.+|.....-..   .++++.+. . =++-|=||+.-   .      +...++.  ..+.+++.
T Consensus       272 l~d~ei~~la~~g~~v~~~P~sn~~lg~g~~p~~~l~~a-G-V~v~LGTD~~~---~------~~~~~~~~m~~a~~~~~  340 (427)
T TIGR03179       272 LSDRELRRLAETGSSVAFCPTSNLFLGSGLFPLRKAEEH-G-VRVALGTDVGG---G------TSFSMLRTMNEAYKVQQ  340 (427)
T ss_pred             CCHHHHHHHHHCCCEEEECHHHHHHHCCCCCCHHHHHHC-C-CEEEEECCCCC---C------CCHHHHHHHHHHHHHHH
T ss_conf             788899999875980887542688846788469999865-9-86999407888---9------98799999999999986


Q ss_pred             HH--CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             72--899899999999999998425
Q gi|254780215|r  234 EK--DVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       234 i~--~~~~eei~~~~~~N~~~~f~~  256 (262)
                      ..  .++..++.+..+.|.-|.+|.
T Consensus       341 ~~~~~l~~~e~L~~ATi~gAraLGl  365 (427)
T TIGR03179       341 LQGEALSPFQSLYLATLGGARALDL  365 (427)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             2789999999999999999998499


No 91 
>pfam01979 Amidohydro_1 Amidohydrolase family. This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyse the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <= D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included.
Probab=95.88  E-value=0.18  Score=30.46  Aligned_cols=136  Identities=15%  Similarity=0.132  Sum_probs=65.6

Q ss_pred             HHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHH--H
Q ss_conf             87664204420330002333579998531000367533112146402344321035202023322113332233332--1
Q gi|254780215|r  116 IEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIA--R  193 (262)
Q Consensus       116 l~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v--~  193 (262)
                      ...+...++++.+|...+......+..      ....+.||...+.+.+..+...+.+.+..+..........+...  .
T Consensus       149 ~~~~~~~~~~~~~h~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (307)
T pfam01979       149 TEEAEKLGLLVHIHAAEASGEVNAILG------GVDLLAHCLHLDDEAIELLKEAGSGIAHCPLSNESILHRGGRFSLMS  222 (307)
T ss_pred             HHHHHCCCCEEEEEECCCCHHHHHHHC------CCEEEEEEEECCHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCCCCC
T ss_conf             776541695799997576146788750------65057655311267999999739946323443133332332012321


Q ss_pred             CCCC-CCEEEEECCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0566-71798307866787776887---58824499999999987289989999999999999842568
Q gi|254780215|r  194 GIPM-DRVLVETDSPYIVPVSCQGK---RNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKIS  258 (262)
Q Consensus       194 ~iPl-driLlETDsP~l~p~~~r~~---~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~~  258 (262)
                      ..+. ...+-++..+... ...++.   ...+............-.+++.+++.+..+.|.-+.+|.-+
T Consensus       223 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~aT~n~A~~lgl~~  290 (307)
T pfam01979       223 GDAQGIGELGSGGARLAR-LADKGGVVGLGTDGAGLNGKDFYLDPDGLSPIEALRMATINPAKALGLDD  290 (307)
T ss_pred             CCCCCCCCCCCCCCCCHH-HHHHCCCCEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             111122313445443378-99845773203212667899874425799999999999999999968999


No 92 
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=95.74  E-value=0.21  Score=30.11  Aligned_cols=137  Identities=9%  Similarity=0.005  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHHHHHHHH-----------HHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf             678999987664204420330002333579-----------998531000367533112146402344321035202023
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRSADDDMA-----------AILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT  177 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l-----------~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~  177 (262)
                      .+.++.-.++|++++.|+.+|+-....|+-           +.|.+...-++.-.+.||--=+.+.++.+.+.|..++.+
T Consensus       215 ~e~l~~~~~~A~~~~~~ih~HlaE~~~E~~~~~~~~G~~pv~~L~~~GlL~~~~~~aH~v~l~d~di~lLa~~G~~Vahc  294 (457)
T PRK09229        215 PDQLAAVLALADADDGPVHIHIAEQQKEVDDCLAWSGARPVEWLLDHAPVDARWCLVHATHLTDAETAALARSGAVAGLC  294 (457)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEC
T ss_conf             99999999999844996145405987899999999689848889747767888589986349989999999539938978


Q ss_pred             CCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH---HHHHHH---------HCCCHHHH
Q ss_conf             32211333---2233332105667179830786678777688758824499999---999987---------28998999
Q gi|254780215|r  178 GMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTA---KALAKE---------KDVSYEDL  242 (262)
Q Consensus       178 g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~---~~iA~i---------~~~~~eei  242 (262)
                      |....+-+   -.+.++++.  -=++=|=|||...         +....-.+.+   ++++..         ..++.+++
T Consensus       295 P~SN~~LgsGiaPv~~~l~a--Gv~vgLGTDsn~~---------~d~~~emr~~~~~~rl~~~~~~~~~~~~~~~~a~~~  363 (457)
T PRK09229        295 PTTEANLGDGIFPAVDYLAA--GGRFGIGSDSHVS---------IDLAEELRLLEYGQRLRDRRRNVLAAAAQGSVGRRL  363 (457)
T ss_pred             CHHHHHCCCCCCCHHHHHHC--CCCEEEECCCCCC---------CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf             25476505888889999877--9968997688866---------798999999999999983222356787655749999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999998425
Q gi|254780215|r  243 MEETTKNALKLFSK  256 (262)
Q Consensus       243 ~~~~~~N~~~~f~~  256 (262)
                      .+.-+.|.-+.+|+
T Consensus       364 l~mAT~~GAraLG~  377 (457)
T PRK09229        364 FDAALAGGAQALGR  377 (457)
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99999999998298


No 93 
>PRK05588 histidinol-phosphatase; Provisional
Probab=95.72  E-value=0.21  Score=30.05  Aligned_cols=123  Identities=16%  Similarity=0.166  Sum_probs=62.8

Q ss_pred             CEEEEECCCCC-HHHHCCHHHHHHHHHHCCCCEEEEECCCH-----------HHHHHHHHHHHHCCC-CCCC--CCCCCC
Q ss_conf             91686138887-56522689999999986998999916798-----------778999999985572-3321--124454
Q gi|254780215|r    1 MLIDTHCHLLL-PDFDEDRHDVIMRAHQANVLKMIAIAIKV-----------KDFVPLIKLCQDYPS-SIFC--SVGTHP   65 (262)
Q Consensus         1 M~iD~H~HL~~-~~~~~d~~~~i~~a~~~gv~~~i~~~~~~-----------~~~~~~~~l~~~~p~-~i~~--a~GiHP   65 (262)
                      |++|.|+|... ..-....++.+++|.+.|+.-+ . +...           .+.....+..+++.+ .+..  -+|+-|
T Consensus         1 M~~D~H~HT~~s~da~~~~ee~v~~Ai~~Gl~~i-~-TdH~d~~~~~~~~~~~d~~~y~~~~~~~~~~~i~~GiE~g~~~   78 (256)
T PRK05588          1 MMFDTHIHTEFSTDSKMKIEEAIKKAKKNNLGII-I-TEHMDLNLPDKNKFCFDIPSYFKEYSKYRNNKLLLGIELGMEK   78 (256)
T ss_pred             CCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEE-E-ECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             9747636899989987769999999998699889-9-6688889998543456999999999998547864579968377


Q ss_pred             CCCCCCCHHHHHHHHHHCCCCC----CCEECCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHCCC-CCEEEC
Q ss_conf             4334467889988531001333----21004467755---33221110246789999876642044-203300
Q gi|254780215|r   66 CHAHEENEVLVDELVCLASHPR----VVAIGETGLDR---YHNAHTIEEQKVVFLRHIEASRITGI-PLVIHS  130 (262)
Q Consensus        66 ~~~~~~~~~~~~~l~~l~~~~~----~~aIGEiGLD~---~~~~~~~e~Q~~vF~~ql~lA~e~~~-pv~iH~  130 (262)
                      ...    +...+.+... .-+-    +=.|+.++.++   +...+..+...+.|+..++.+...++ -|+=|-
T Consensus        79 ~~~----~~~~~~l~~~-~fDyvIGSvH~i~~~d~~~~~~~~~~~~~~~~~~Yf~~~~~~~~~~~~fdvlgHl  146 (256)
T PRK05588         79 DLI----EENKEIINKY-EFDYIIGSIHLINGVDLYLEEKYKDRSKEEAYHIYFENMLKCLEKYDFIDSLGHI  146 (256)
T ss_pred             CCH----HHHHHHHHCC-CCCEEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf             858----9999987348-9887998677627868514666548999999999999999999835998663252


No 94 
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=95.66  E-value=0.11  Score=31.90  Aligned_cols=115  Identities=17%  Similarity=0.272  Sum_probs=69.1

Q ss_pred             EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECC-----------CHHH--HHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             686138887565226899999999869989999167-----------9877--899999998557233211244544334
Q gi|254780215|r    3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAI-----------KVKD--FVPLIKLCQDYPSSIFCSVGTHPCHAH   69 (262)
Q Consensus         3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~-----------~~~~--~~~~~~l~~~~p~~i~~a~GiHP~~~~   69 (262)
                      ||+|.|+-.++       .++.|..+|+..++--|+           ++..  ..+.++-++.+|-++    |+.=.--.
T Consensus       138 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGPa~Gt~atT~TpG~~~i~~ml~a~d~~P~N~----g~lGKGn~  206 (573)
T PRK13206        138 IDCHVHLICPQ-------IVDEALGAGITTIIGGGTGPAEGSKATTVTPGAWHLARMLEALDGWPVNI----ALLGKGNT  206 (573)
T ss_pred             EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEE----EEEECCCC
T ss_conf             36889844888-------89999866970674587678777775101797789999998503178105----56423667


Q ss_pred             CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH-----HHHHHHHHH
Q ss_conf             467889988531001333210044677553322111024678999987664204420330002-----333579998
Q gi|254780215|r   70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS-----ADDDMAAIL  141 (262)
Q Consensus        70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~-----a~~~~l~iL  141 (262)
                      ...+...++++          -|-+||--+   +++-.--.+...-|..|.+++..|.||+-.     --+++++-+
T Consensus       207 s~~~~l~Eqi~----------AGa~GlKiH---EDWGaTpa~Id~~L~vAde~DvQvaiHTDtLNEsGfvedTi~Ai  270 (573)
T PRK13206        207 VSPEAMWEQLR----------GGAAGFKLH---EDWGTTPAAIDACLTVADAAGVQVALHSDTLNEAGFVEDTLAAI  270 (573)
T ss_pred             CCHHHHHHHHH----------HCCCEEECC---CCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf             88178999997----------252332102---21378878999887777863926897448765444136678875


No 95 
>PRK07572 cytosine deaminase; Validated
Probab=95.62  E-value=0.23  Score=29.82  Aligned_cols=218  Identities=13%  Similarity=0.090  Sum_probs=95.6

Q ss_pred             HHHCCCCEEE---EE-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCC
Q ss_conf             9986998999---91-6798778999999985572332112445443344678899885310013332100446775533
Q gi|254780215|r   25 AHQANVLKMI---AI-AIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYH  100 (262)
Q Consensus        25 a~~~gv~~~i---~~-~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~  100 (262)
                      +...|...+-   .+ ...+..++..+++.+++.+.+-.-+---|...--..+...+.+.+.+... +-.||  |++++.
T Consensus       106 a~a~Gtt~iRtHvdv~d~~l~~~ea~~~~r~~~~~~~~lqiVAfpq~g~~~~~~~~~ll~~al~~G-ad~vG--G~p~~~  182 (425)
T PRK07572        106 AVARGLLAIRSHVDVCDPRLLAVEALLEVRERVAPYLDLQLVAFPQDGVLRSPGALANLKRALDMG-VDVVG--GIPHFE  182 (425)
T ss_pred             HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHCC-CCEEE--CCCCCC
T ss_conf             997596525513625797313899999999972432212046526643335845899999999628-97884--546876


Q ss_pred             -CCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHH---HHHHHHH----HHHHCCCCCCCCEECCCCHH-------HHH
Q ss_conf             -22111024678999987664204420330002333---5799985----31000367533112146402-------344
Q gi|254780215|r  101 -NAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADD---DMAAILQ----EEMKKGPFPFVIHCFSSSQK-------LAD  165 (262)
Q Consensus       101 -~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~---~~l~iL~----~~~~~~~~~~i~H~FsG~~~-------~~~  165 (262)
                       ...+.   .+....-.+||.++++||-+|+-...+   ..++.+-    +..-.+ .-.+=|||+-+..       .+.
T Consensus       183 ~t~~d~---~~~l~~~f~lA~~~g~~iDiHldE~~d~~~~~l~~la~~t~~~G~~g-rVt~sH~~~L~~~~~~~~~~~i~  258 (425)
T PRK07572        183 RTMADG---AASVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLGLQG-RVAGSHLTSMHSMDNYYVSKLIP  258 (425)
T ss_pred             CCCHHH---HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-CEEECCCCCCCCCCHHHHHHHHH
T ss_conf             661438---99999999999974997587346877715789999999999828988-55613631113499999999999


Q ss_pred             HHHCCCCEEECCCCCC-HHHH-----------HHHHHHHHCCCCCCEEEEECC---CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             3210352020233221-1333-----------223333210566717983078---667877768875882449999999
Q gi|254780215|r  166 ICLELGGYISFTGMIT-FPKY-----------DALRAIARGIPMDRVLVETDS---PYIVPVSCQGKRNEPAYVVNTAKA  230 (262)
Q Consensus       166 ~~l~~g~y~S~~g~i~-~~~~-----------~~~~e~v~~iPldriLlETDs---P~l~p~~~r~~~n~P~~i~~~~~~  230 (262)
                      .+.+.|.-+--.|... |-.+           ..++++.+ - -=++-+=||+   ||-   ||.  ...|..+...+-.
T Consensus       259 ~lAeagi~vv~~P~~Nl~L~gR~~~~p~~RGvtpv~eL~~-a-GV~ValGtDnv~D~~~---p~G--~~DmLe~a~l~~~  331 (425)
T PRK07572        259 LMAEAGVAAIANPLINITLQGRHDTYPKRRGMTRVPELMA-A-GINVAFGHDCVMDPWY---SLG--SGDMLEVAHMGLH  331 (425)
T ss_pred             HHHHCCCCEEECCCCCCEECCCCCCCCCCCCCCCHHHHHH-C-CCEEEEECCCCCCCCC---CCC--CCCHHHHHHHHHH
T ss_conf             9998299555256555230366788898888889999997-6-9859990688878775---678--8768999999999


Q ss_pred             HHHHHCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf             9987289-9899999999999998425
Q gi|254780215|r  231 LAKEKDV-SYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       231 iA~i~~~-~~eei~~~~~~N~~~~f~~  256 (262)
                      ++.+..- +.+...+.++.|.-+..|.
T Consensus       332 ~~~l~~~~~~~~~~~~vT~~~A~~lGl  358 (425)
T PRK07572        332 VAQMTGQDAMRACFDAVTVNPARIMGL  358 (425)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             874688899999999973378885199


No 96 
>PRK13985 UreB urease subunit beta; Provisional
Probab=95.51  E-value=0.12  Score=31.77  Aligned_cols=115  Identities=19%  Similarity=0.304  Sum_probs=69.0

Q ss_pred             EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC-----------CCHHH--HHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             68613888756522689999999986998999916-----------79877--899999998557233211244544334
Q gi|254780215|r    3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA-----------IKVKD--FVPLIKLCQDYPSSIFCSVGTHPCHAH   69 (262)
Q Consensus         3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~-----------~~~~~--~~~~~~l~~~~p~~i~~a~GiHP~~~~   69 (262)
                      ||+|.|+-.++       .++.|..+|+..++--|           +++..  ..+.++.++.+|-++    |+.-.--.
T Consensus       132 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGPa~Gt~att~TpG~~~i~~ml~a~d~~P~N~----g~~gKGn~  200 (568)
T PRK13985        132 IDTHIHFISPQ-------QIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNL----GFLAKGNA  200 (568)
T ss_pred             EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE----EEEECCCC
T ss_conf             26576643888-------89999864865774487578777677676897789999997500487015----77532666


Q ss_pred             CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH-----HHHHHHHHHH
Q ss_conf             46788998853100133321004467755332211102467899998766420442033000-----2333579998
Q gi|254780215|r   70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR-----SADDDMAAIL  141 (262)
Q Consensus        70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r-----~a~~~~l~iL  141 (262)
                      ...+...++++          -|-+||--+   +++-.--.+...-|..|.+++..|.||+-     +.-+++++-+
T Consensus       201 s~~~~L~Eqi~----------AGa~GlKiH---EDWGaTpa~Id~~L~vAde~DvQvaiHTDtLNEsGfvEdT~~Ai  264 (568)
T PRK13985        201 SNDASLADQIE----------AGAIGFKIH---EDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAI  264 (568)
T ss_pred             CCHHHHHHHHH----------HCCCCCCCC---CCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf             88077999997----------242513343---11378878999998888874926897458866544036578875


No 97 
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=95.41  E-value=0.27  Score=29.33  Aligned_cols=221  Identities=14%  Similarity=0.091  Sum_probs=124.5

Q ss_pred             HHHHHHHCCCCEEEEECC---CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC-------CC-
Q ss_conf             999999869989999167---9877899999998557233211244544334467889988531001333-------21-
Q gi|254780215|r   21 VIMRAHQANVLKMIAIAI---KVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPR-------VV-   89 (262)
Q Consensus        21 ~i~~a~~~gv~~~i~~~~---~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~-------~~-   89 (262)
                      .++...+.||+.+...+.   ...++....++.....-.++..+.+|.....+   ...+.+..-.....       +. 
T Consensus       215 a~~~l~s~GiT~v~d~~~~~~~~~~~~~~r~~~~~~~l~~rv~~~l~~~~~~~---~~~~~~~~~~~~~~~~~g~~K~f~  291 (535)
T COG1574         215 AARELNSLGITGVHDMAGYQGYYADYEAYRALAAGGELPVRVALLLFTEDLKE---ERLDLLRQTGAKGLLQGGGVKLFA  291 (535)
T ss_pred             HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHH---HHHHHCCCCCCCCEEECCCEEEEE
T ss_conf             99999856972887451013535379999998745861489985225641336---777513557775546427658998


Q ss_pred             --EECCCCCCC---CCCCC----CCHHHHHHHHHHHHHHHHCCCCCEEECH--HHHHHHHHHHHHHHHCC----CCCCCC
Q ss_conf             --004467755---33221----1102467899998766420442033000--23335799985310003----675331
Q gi|254780215|r   90 --AIGETGLDR---YHNAH----TIEEQKVVFLRHIEASRITGIPLVIHSR--SADDDMAAILQEEMKKG----PFPFVI  154 (262)
Q Consensus        90 --aIGEiGLD~---~~~~~----~~e~Q~~vF~~ql~lA~e~~~pv~iH~r--~a~~~~l~iL~~~~~~~----~~~~i~  154 (262)
                        +.||--..-   |.+..    ......+-|++.++-|.+.++|+.+|+-  .|-+.+++.+.+..+..    ...-|.
T Consensus       292 Dgslg~rtA~l~~~y~d~~~~~G~~l~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~LdafE~~~~~~~~~~~r~rie  371 (535)
T COG1574         292 DGSLGERTALLAAPYADGPGPSGELLLTEEELEELVRAADERGLPVAVHAIGDGAVDAALDAFEKARKKNGLKGLRHRIE  371 (535)
T ss_pred             ECCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf             57877411201586557889888635499999999999997799179998166999999999998765357766776154


Q ss_pred             EECCCCHHHHHHHHCCCCEEECCCCCCHHH------HHHHHHHHHCCCCCC-------EEEEECCCCCCCCCCC------
Q ss_conf             121464023443210352020233221133------322333321056671-------7983078667877768------
Q gi|254780215|r  155 HCFSSSQKLADICLELGGYISFTGMITFPK------YDALRAIARGIPMDR-------VLVETDSPYIVPVSCQ------  215 (262)
Q Consensus       155 H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~------~~~~~e~v~~iPldr-------iLlETDsP~l~p~~~r------  215 (262)
                      |.=.-+.++++++.++|.-+|+.+...+.-      .---...-...|...       +-.=||+|-.++.|..      
T Consensus       372 H~~~v~~~~i~R~~~Lgv~~svQP~f~~~~~~~~~~rlG~~r~~~~~p~~~ll~~G~~la~gSD~Pv~~~dP~~~i~~AV  451 (535)
T COG1574         372 HAELVSPDQIERFAKLGVIASVQPNFLFSDGEWYVDRLGEERASRSYPFRSLLKAGVPLAGGSDAPVEPYDPWLGIYAAV  451 (535)
T ss_pred             EEEECCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHH
T ss_conf             65406876789999639458613630025226889765056553177199999789867326889998887389999998


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             ------87588244999999999872899899999999999998425
Q gi|254780215|r  216 ------GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       216 ------~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                            |..+.|..            .+++++....-+.|+-.+-+.
T Consensus       452 tr~~~~g~~~~~~~------------~L~~~eAL~~yT~~~A~a~~~  486 (535)
T COG1574         452 TRKTPGGRVLGPEE------------RLTREEALRAYTEGGAYASGA  486 (535)
T ss_pred             CCCCCCCCCCCCCC------------CCCHHHHHHHHHHHHHHHHHC
T ss_conf             28887787776002------------567999999986304786204


No 98 
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=95.39  E-value=0.27  Score=29.29  Aligned_cols=96  Identities=16%  Similarity=0.121  Sum_probs=59.1

Q ss_pred             CCCCCEECCCCHH------HHHHHHCCCCEEECC--CCCCH---HHH------HHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf             7533112146402------344321035202023--32211---333------223333210566717983078667877
Q gi|254780215|r  150 FPFVIHCFSSSQK------LADICLELGGYISFT--GMITF---PKY------DALRAIARGIPMDRVLVETDSPYIVPV  212 (262)
Q Consensus       150 ~~~i~H~FsG~~~------~~~~~l~~g~y~S~~--g~i~~---~~~------~~~~e~v~~iPldriLlETDsP~l~p~  212 (262)
                      .-++-|=+++...      .++.+.++|.+|-|+  +.+.-   .|+      .++..+.|... =.+++-||+=.  |.
T Consensus       107 VDIL~~p~~~r~~~~~~hv~ak~A~e~gV~lEI~~~~~l~~~~~~R~~~i~n~~~l~~l~r~yg-~pivisS~A~s--~l  183 (237)
T PRK00912        107 VDILNHPYLNRKDSGLNHVLAKLAAENNVAIEIILRDILHSRGGRRARTLSQIRANLALHRKYD-FPLVLSSGAMS--CY  183 (237)
T ss_pred             CCEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHCC-CCEEEECCCCC--HH
T ss_conf             8788465434688663389999999749079996524433672168999987999999998669-98899679998--44


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             76887588244999999999872899899999999999998425
Q gi|254780215|r  213 SCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       213 ~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      ..|        -++-+-.++...|++.+++.+.+..|.+++.-+
T Consensus       184 dlR--------~p~d~~~l~~~~Gl~~~~a~~als~~p~~il~~  219 (237)
T PRK00912        184 DLR--------SPKEMIALAEVFGLEEDEALEALTSVPEKIIEK  219 (237)
T ss_pred             HHC--------CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             417--------999999999985999999999999989999984


No 99 
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=95.23  E-value=0.13  Score=31.38  Aligned_cols=115  Identities=15%  Similarity=0.227  Sum_probs=68.5

Q ss_pred             EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECC-----------CHHHH--HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             686138887565226899999999869989999167-----------98778--99999998557233211244544334
Q gi|254780215|r    3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAI-----------KVKDF--VPLIKLCQDYPSSIFCSVGTHPCHAH   69 (262)
Q Consensus         3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~-----------~~~~~--~~~~~l~~~~p~~i~~a~GiHP~~~~   69 (262)
                      ||+|.|+-.++       .++.|..+|+..++--|+           ++..|  .+.++-.+.+|-++    |+.=.--.
T Consensus       136 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGPa~Gt~att~TpG~~~i~~ml~a~d~~P~N~----g~~gKGn~  204 (572)
T PRK13309        136 IDSHIHLISPQ-------QAYHALSNGVATFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEGLPVNV----GILGKGNS  204 (572)
T ss_pred             CCCEEECCCHH-------HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE----EEEECCCC
T ss_conf             32100004778-------89999856876875686678767666324797799999997401277104----56313667


Q ss_pred             CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH-----HHHHHHHHHH
Q ss_conf             46788998853100133321004467755332211102467899998766420442033000-----2333579998
Q gi|254780215|r   70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR-----SADDDMAAIL  141 (262)
Q Consensus        70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r-----~a~~~~l~iL  141 (262)
                      ...+...++++          -|-+||--+   +++-.--.+...-|..|.+++..|.||+-     +.-+++++-+
T Consensus       205 s~~~~L~eqi~----------AGa~GlKiH---EDWGaTPa~Id~~L~vAde~DvQvaiHTDTLNE~GfvEdTi~Ai  268 (572)
T PRK13309        205 YGRGPLLEQAI----------AGVVGYKVH---EDWGATANALRHALRMADEVDIQVSVHTDSLNECGYVEDTIDAF  268 (572)
T ss_pred             CCHHHHHHHHH----------HCCCCCCCC---CCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf             88077999997----------242545454---43479889999887778863926897458766545004358873


No 100
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=95.22  E-value=0.16  Score=30.86  Aligned_cols=115  Identities=20%  Similarity=0.268  Sum_probs=69.9

Q ss_pred             EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC-----------CCHHH--HHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             68613888756522689999999986998999916-----------79877--899999998557233211244544334
Q gi|254780215|r    3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA-----------IKVKD--FVPLIKLCQDYPSSIFCSVGTHPCHAH   69 (262)
Q Consensus         3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~-----------~~~~~--~~~~~~l~~~~p~~i~~a~GiHP~~~~   69 (262)
                      ||+|.|+-.++       .++.|..+|+..++--|           +++..  ..+.++-++.+|-++    |+.=.--.
T Consensus       132 iDtHvHfi~Pq-------q~~~Al~sGiTT~iGGGtGPa~Gt~att~tpG~~~i~~ml~a~d~~P~N~----g~~gKGn~  200 (568)
T PRK13207        132 IDTHIHFICPQ-------QIEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAADAFPVNI----GFLGKGNA  200 (568)
T ss_pred             EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE----EEEECCCC
T ss_conf             16655305887-------89999855866874587688766656666897799999998654077213----56633667


Q ss_pred             CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH-----HHHHHHHHH
Q ss_conf             467889988531001333210044677553322111024678999987664204420330002-----333579998
Q gi|254780215|r   70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS-----ADDDMAAIL  141 (262)
Q Consensus        70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~-----a~~~~l~iL  141 (262)
                      ...+...++++          -|-+||--   .+++-.--.+...-|..|.+++..|.||+-.     .-+++++-+
T Consensus       201 s~~~~l~eqi~----------AGa~GlKi---HEDwGatpa~Id~~L~vad~~DvQvaiHTDtLNEsGfvEdT~~Ai  264 (568)
T PRK13207        201 SLPEALEEQIE----------AGAIGLKL---HEDWGATPAAIDNCLSVADEYDVQVAIHTDTLNESGFVEDTIAAF  264 (568)
T ss_pred             CCCHHHHHHHH----------HCCEEEEE---ECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCEECCHHHHH
T ss_conf             88278999986----------18257885---000378888998786541224736999706665566031236662


No 101
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=95.12  E-value=0.33  Score=28.75  Aligned_cols=226  Identities=14%  Similarity=0.115  Sum_probs=114.2

Q ss_pred             EEEEECCCCCHHH------------HCCHHHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             1686138887565------------2268999999998699899991679--8778999999985572332112445443
Q gi|254780215|r    2 LIDTHCHLLLPDF------------DEDRHDVIMRAHQANVLKMIAIAIK--VKDFVPLIKLCQDYPSSIFCSVGTHPCH   67 (262)
Q Consensus         2 ~iD~H~HL~~~~~------------~~d~~~~i~~a~~~gv~~~i~~~~~--~~~~~~~~~l~~~~p~~i~~a~GiHP~~   67 (262)
                      -||+|+|+-.+.+            +...++........||.+.|.|-.+  -.+..-.++..++++.. ...+++=|-.
T Consensus         2 aiD~H~Hv~dp~~~~~~~~~~~~p~~~~~~dl~~~~~~~Gi~r~VlVQ~s~~g~Dn~~ll~al~~~~~~-~~~v~v~~~~   80 (263)
T cd01311           2 AVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIYGADNSNLLDALASNGKA-RGGATVDPRT   80 (263)
T ss_pred             CEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCC-EEEEEEECCC
T ss_conf             785512456899888888677899998999999999980996599978887745389999999856994-7999980798


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH-HHHHHHHHHHHHH
Q ss_conf             344678899885310013332100446775533221110246789999876642044203300023-3357999853100
Q gi|254780215|r   68 AHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA-DDDMAAILQEEMK  146 (262)
Q Consensus        68 ~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a-~~~~l~iL~~~~~  146 (262)
                      +   .+..++.+...    .+++|-   +........ .  ..-+.+..+-+.+++..+-+|.... ..++.+.+++.  
T Consensus        81 ~---~d~~l~~l~~~----GvrGvR---~n~~~~~~~-~--~~~~~~~~~ri~~~gw~~~l~~~~~~l~~~~~~l~~~--  145 (263)
T cd01311          81 T---TDAELKEMHDA----GVRGVR---FNFLFGGVD-N--KDELDEIAKRAAELGWHVQVYFDAVDLPALLPFLQKL--  145 (263)
T ss_pred             C---CHHHHHHHHHC----CCCCEE---EECCCCCCC-C--HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC--
T ss_conf             9---97999998765----897137---725677778-9--8999999999987498645203711069999999978--


Q ss_pred             CCCCCCCC-EECCCC---------HHHHHHHHCC-CCEEECCCCCCHHH--------HHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             03675331-121464---------0234432103-52020233221133--------32233332105667179830786
Q gi|254780215|r  147 KGPFPFVI-HCFSSS---------QKLADICLEL-GGYISFTGMITFPK--------YDALRAIARGIPMDRVLVETDSP  207 (262)
Q Consensus       147 ~~~~~~i~-H~FsG~---------~~~~~~~l~~-g~y~S~~g~i~~~~--------~~~~~e~v~~iPldriLlETDsP  207 (262)
                        +.++|+ |+=.-.         .+.+.++++. ++|+=+||.-+...        ..-.+.++.. ..+|+|-=||-|
T Consensus       146 --p~~vViDH~g~p~~~~g~~~~~~~~l~~L~~~~~v~vKlSg~~r~s~~~~~~~d~~p~~~~l~~~-gp~RlmWGSDWP  222 (263)
T cd01311         146 --PVAVVIDHFGRPDVTKGVDGAEFAALLKLIEEGNVWVKVSGPYRLSVKQEAYADVIAFARQIVAA-APDRLVWGTDWP  222 (263)
T ss_pred             --CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCCC
T ss_conf             --99899856778898878779889999999966986999645455158898866899999999986-999489979999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHH
Q ss_conf             678777688758824499999999987289989999-999999999
Q gi|254780215|r  208 YIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLM-EETTKNALK  252 (262)
Q Consensus       208 ~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~-~~~~~N~~~  252 (262)
                      ...   +......| +....++.+.+.  .+-+++. +++..|-.|
T Consensus       223 h~~---~~~~~~~p-d~~~ll~~~~~w--~~d~~~~~~ilv~NP~r  262 (263)
T cd01311         223 HPR---LREPDPMP-DDGALLRLIPSW--APDAQLQRKNLVDNPAR  262 (263)
T ss_pred             CCC---CCCCCCCC-CHHHHHHHHHHH--CCCHHHHHHHHHHCHHH
T ss_conf             999---87678999-989999999988--69999999998539421


No 102
>pfam01244 Peptidase_M19 Membrane dipeptidase (Peptidase family M19).
Probab=95.06  E-value=0.34  Score=28.64  Aligned_cols=144  Identities=15%  Similarity=0.077  Sum_probs=90.0

Q ss_pred             HHHHHHH-HHHHHHCCCCCEE-EC-HHHHHHHHHHHHH--HHHCCCCCC-CCEECCCCHHHHHHHHCCCCEEECCCCCCH
Q ss_conf             6789999-8766420442033-00-0233357999853--100036753-311214640234432103520202332211
Q gi|254780215|r  109 KVVFLRH-IEASRITGIPLVI-HS-RSADDDMAAILQE--EMKKGPFPF-VIHCFSSSQKLADICLELGGYISFTGMITF  182 (262)
Q Consensus       109 ~~vF~~q-l~lA~e~~~pv~i-H~-r~a~~~~l~iL~~--~~~~~~~~~-i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~  182 (262)
                      ..-|-++ ++-..+++..|=+ |+ .++..+++++-+.  ...+...+. .=|.=+=+-++++.+.+.|-.++++....|
T Consensus       156 Lt~~G~~~v~~mn~lGmivDlSH~s~~~~~d~~~~s~~PviaSHSn~ral~~h~RNl~De~i~aia~~gGviGi~~~~~f  235 (316)
T pfam01244       156 LTRFGKEVVREMNRLGILIDLSHLSERTFWDVLELSKAPVVASHSNARALCDHPRNLTDEQLKAIAESGGVIGVNFYPAF  235 (316)
T ss_pred             CCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHCCCCEEEECCCHHHCCCCCCCCCHHHHHHHHHCCCEEEEEECHHH
T ss_conf             88779999999997696776487988999999997099989978785540588888889999999864987999600643


Q ss_pred             HH----------HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             33----------32233332105667179830786678777688758824499999999987289989999999999999
Q gi|254780215|r  183 PK----------YDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALK  252 (262)
Q Consensus       183 ~~----------~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~  252 (262)
                      -+          .+.+.-+++.+..|.+=+=||-=  .....-.....|+.++.+++.+.+ +|.+.+++.++...|+.|
T Consensus       236 l~~~~~~~i~~~~~Hi~~i~~l~G~dhVgiGsDfd--g~~~~~~gl~~~~~~~~l~~~L~~-rG~se~~i~ki~g~N~lR  312 (316)
T pfam01244       236 LKKDANATIDDVVDHIDYIVDLAGIDHVGLGSDFD--GIGENPEGLEDVSKLPNLTAELLR-RGYSEAEIEKILGGNWLR  312 (316)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCC--CCCCCCCCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHH
T ss_conf             28999999999999999999970987179884578--999997776898889999999998-698999999998563999


Q ss_pred             HHH
Q ss_conf             842
Q gi|254780215|r  253 LFS  255 (262)
Q Consensus       253 ~f~  255 (262)
                      +|.
T Consensus       313 vl~  315 (316)
T pfam01244       313 VLR  315 (316)
T ss_pred             HHC
T ss_conf             842


No 103
>TIGR01792 urease_alph urease, alpha subunit; InterPro: IPR005848    Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies , but each holoenzyme consists of four structural domains : three structural domains and a nickel-binding catalytic domain common to amidohydrolases . Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organization as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organization (IPR008221 from INTERPRO). This entry describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species).    Urease (3.5.1.5 from EC) belongs to MEROPS peptidase family M38 (clan MJ). ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process.
Probab=95.03  E-value=0.1  Score=32.09  Aligned_cols=115  Identities=15%  Similarity=0.222  Sum_probs=70.3

Q ss_pred             EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEE-----------ECCCHHHH--HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             686138887565226899999999869989999-----------16798778--99999998557233211244544334
Q gi|254780215|r    3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIA-----------IAIKVKDF--VPLIKLCQDYPSSIFCSVGTHPCHAH   69 (262)
Q Consensus         3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~-----------~~~~~~~~--~~~~~l~~~~p~~i~~a~GiHP~~~~   69 (262)
                      ||+|.|--.       .+.++.|.++||+.++-           ++|++..|  .+.++-.+..|-+    +|+-=    
T Consensus       140 iDtHVHyi~-------P~~~~~AL~~GITT~~GGGTGpadGt~atT~tpG~w~~~~ml~a~dglPiN----~G~~g----  204 (605)
T TIGR01792       140 IDTHVHYIS-------PQQVQAALDSGITTLIGGGTGPADGTKATTCTPGPWYLHRMLQAADGLPIN----IGFTG----  204 (605)
T ss_pred             CEEEEEEEC-------CCHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCC----CCEEE----
T ss_conf             404678606-------437889852898799727435467875454277379999999975467510----12352----


Q ss_pred             CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC--HH---HHHHHHHHH
Q ss_conf             4678899885310013332100446775533221110246789999876642044203300--02---333579998
Q gi|254780215|r   70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS--RS---ADDDMAAIL  141 (262)
Q Consensus        70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~--r~---a~~~~l~iL  141 (262)
                      +......+.|.+.+.      =|=|||=   -+++|=.==.+.+.=|..|.+|+.-|.||+  -+   --++|+.-+
T Consensus       205 KG~~s~~~al~E~i~------AGA~GlK---vHEDWGATp~aId~aL~vAd~yDVqvA~HtDTLNE~GfVE~TiaA~  272 (605)
T TIGR01792       205 KGSASGPEALVEQIE------AGACGLK---VHEDWGATPAAIDNALSVADEYDVQVAVHTDTLNESGFVEDTIAAF  272 (605)
T ss_pred             ECCCCCHHHHHHHHH------HHHCEEC---CCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf             045453237999998------6100002---1236577688999999875306802888234225533167799871


No 104
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=94.96  E-value=0.19  Score=30.38  Aligned_cols=105  Identities=14%  Similarity=0.203  Sum_probs=64.3

Q ss_pred             EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECC-------CH--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             686138887565226899999999869989999167-------98--778999999985572332112445443344678
Q gi|254780215|r    3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAI-------KV--KDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE   73 (262)
Q Consensus         3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~-------~~--~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~   73 (262)
                      ||+|.|+-.++       .++.|..+|+..++--|+       ++  ....+.++-++.+|-++    |+.=.--....+
T Consensus       136 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGp~att~Tpg~~~i~~ml~a~d~~P~N~----g~lgKGn~s~~~  204 (569)
T PRK13308        136 IDVHVHFDSAG-------LVDHALASGITTMIGGGLGPTVGIDSGGPFNTGRFLQAAEAWPVNF----GFLGRGNSSDPA  204 (569)
T ss_pred             EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE----EEEECCCCCCCH
T ss_conf             04566633877-------8999986186232578757876566898899999997644177314----551036668807


Q ss_pred             HHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
Q ss_conf             8998853100133321004467755332211102467899998766420442033000
Q gi|254780215|r   74 VLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR  131 (262)
Q Consensus        74 ~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r  131 (262)
                      ...++++          -|-+||--+.   ++-.--.+...-|..|.+++..|.||+-
T Consensus       205 ~L~eqi~----------AGa~GlKiHE---DWGaTPaaId~~L~vAd~~DvQvaiHTD  249 (569)
T PRK13308        205 ALIEQVE----------AGVMGLKIHE---DWGAMPAAIDTCLGAADEYDFQVQLHTD  249 (569)
T ss_pred             HHHHHHH----------HHHCCCCCCC---CCCCCHHHHHHHHHHHHHHCEEEEEECC
T ss_conf             8999998----------5433133346---5578736666776777763816898517


No 105
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=94.95  E-value=0.37  Score=28.43  Aligned_cols=133  Identities=16%  Similarity=0.172  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCC--H----
Q ss_conf             6789999876642044203300023335799985310003675331121464023443210352020233221--1----
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMIT--F----  182 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~--~----  182 (262)
                      .+.+...++.|.+++.++.+|+..... +.... +   . ....+.|++.-+.+..+.+.+.|.+++-+....  .    
T Consensus       159 ~~~~~~~~~~a~~~g~~v~~H~~~~~~-~~~~~-~---~-G~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  232 (342)
T cd01299         159 EEELRAIVDEAHKAGLYVAAHAYGAEA-IRRAI-R---A-GVDTIEHGFLIDDETIELMKEKGIFLVPTLATYEALAAEG  232 (342)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCCHHH-HHHHH-H---H-CCCHHHHHCCCCHHHHHHHHHCCCEEECCHHHHHHHHHHC
T ss_conf             999999999999819946774166389-99999-9---1-9962676504889999999977918945647878877502


Q ss_pred             ----------HH----HHHHHHHHHCCC--CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             ----------33----322333321056--67179830786678777688758824499999999987289989999999
Q gi|254780215|r  183 ----------PK----YDALRAIARGIP--MDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEET  246 (262)
Q Consensus       183 ----------~~----~~~~~e~v~~iP--ldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~  246 (262)
                                .+    .......++.+-  --++.+=||+....        +...+...-+..+.+ .+++..+..+-.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGv~v~lgtD~~~~~--------~~~~~~~~~~~~~~~-~gl~~~eal~~a  303 (342)
T cd01299         233 AAPGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTDAGFPV--------PPHGWNARELELLVK-AGGTPAEALRAA  303 (342)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC--------CCHHHHHHHHHHHHH-CCCCHHHHHHHH
T ss_conf             44577667888888766645799999997799499867888887--------726799999999998-399999999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999998425
Q gi|254780215|r  247 TKNALKLFSK  256 (262)
Q Consensus       247 ~~N~~~~f~~  256 (262)
                      +.|.-+.+|.
T Consensus       304 T~n~A~~lgl  313 (342)
T cd01299         304 TANAAELLGL  313 (342)
T ss_pred             HHHHHHHHCC
T ss_conf             9999999689


No 106
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=94.94  E-value=0.21  Score=30.10  Aligned_cols=105  Identities=18%  Similarity=0.276  Sum_probs=65.1

Q ss_pred             EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC-----------CCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             68613888756522689999999986998999916-----------7987--7899999998557233211244544334
Q gi|254780215|r    3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA-----------IKVK--DFVPLIKLCQDYPSSIFCSVGTHPCHAH   69 (262)
Q Consensus         3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~-----------~~~~--~~~~~~~l~~~~p~~i~~a~GiHP~~~~   69 (262)
                      ||+|.|+-.++       .++.|..+||..++--|           +++.  ...+.++-++.+|-++- -+|   .--.
T Consensus       132 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGPa~Gt~atT~TpG~~~i~~ml~a~d~~P~N~g-~lg---KGn~  200 (567)
T cd00375         132 IDTHVHFICPQ-------QIEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADGLPVNIG-FLG---KGNG  200 (567)
T ss_pred             EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE-EEE---CCCC
T ss_conf             16788843888-------899998658767635866787777764468977999999986552772135-631---3666


Q ss_pred             CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
Q ss_conf             46788998853100133321004467755332211102467899998766420442033000
Q gi|254780215|r   70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR  131 (262)
Q Consensus        70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r  131 (262)
                      ...+...++++          -|-+||--+   ++|-.--.+...-|..|.+++..|.||+-
T Consensus       201 s~~~~l~eqi~----------AGa~GlKiH---EDWGaTpa~Id~~L~vAd~~DvQvaiHTD  249 (567)
T cd00375         201 SSPDALAEQIE----------AGACGLKLH---EDWGATPAAIDTCLSVADEYDVQVAIHTD  249 (567)
T ss_pred             CCHHHHHHHHH----------HHHCCCCCC---CCCCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             88578999998----------653401112---22478777888876666650860454305


No 107
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=94.72  E-value=0.42  Score=28.06  Aligned_cols=120  Identities=23%  Similarity=0.249  Sum_probs=65.0

Q ss_pred             CCCCCEEECHHHH--HHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHH-HHHHHH-------HH
Q ss_conf             0442033000233--3579998531000367533112146402344321035202023322113-332233-------33
Q gi|254780215|r  122 TGIPLVIHSRSAD--DDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFP-KYDALR-------AI  191 (262)
Q Consensus       122 ~~~pv~iH~r~a~--~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~-~~~~~~-------e~  191 (262)
                      -..|+.+|+-.+.  ...++...++   +....+.|+..+ ....+.+.+.|...+.++..... +....+       .+
T Consensus       191 ~~~~~~~h~~~~~~~~~~~~~~~~~---~~~~~~~h~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (359)
T cd01309         191 GEIPVRIHAHRADDILTAIRIAKEF---GIKITIEHGAEG-YKLADELAKHGIPVIYGPTLTLPKKVEEVNDAIDTNAYL  266 (359)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHC---CCCEEEEECCHH-HHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9972999967678999999999864---984799733018-779999997499689684201331136554004558999


Q ss_pred             HHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             210566717983078667877768875882449999999998728998999999999999984256
Q gi|254780215|r  192 ARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKI  257 (262)
Q Consensus       192 v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~  257 (262)
                      ++. .--++.+=||.|... .         ..+...+..+.+ .+++.++..+..+.|.-+++|.-
T Consensus       267 ~~~-~gv~~~~~tD~~~~~-~---------~~~~~~~~~~~~-~Gl~~~eal~~aT~n~A~~lgl~  320 (359)
T cd01309         267 LKK-GGVAFAISSDHPVLN-I---------RNLNLEAAKAVK-YGLSYEEALKAITINPAKILGIE  320 (359)
T ss_pred             HHH-CCCEEEEECCCCCCH-H---------HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             981-995499966887541-7---------599999999998-09999999999999999994998


No 108
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.64  E-value=0.44  Score=27.93  Aligned_cols=127  Identities=17%  Similarity=0.105  Sum_probs=80.3

Q ss_pred             HHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHC--CCCE-EECCCCCCHHHHHH--
Q ss_conf             999876642044203300023335799985310003675331121464023443210--3520-20233221133322--
Q gi|254780215|r  113 LRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLE--LGGY-ISFTGMITFPKYDA--  187 (262)
Q Consensus       113 ~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~--~g~y-~S~~g~i~~~~~~~--  187 (262)
                      ++.++-|.+.++||-+|.-++.+ +.-..+ .    ....+-|..--+.+.+..+.+  .|-. -...+.-.|.-...  
T Consensus       223 ~~~l~~a~~~g~~v~~HA~~~~g-~~~A~~-~----g~~s~~H~~~ld~~~~~~~a~~~~g~~~~~l~p~~~~~l~e~~~  296 (406)
T COG1228         223 RAVLAAALKAGIPVKAHAHGADG-IKLAIR-L----GAKSAEHGTLLDHETAALLAEKGAGTPVPVLLPRTKFELRELDY  296 (406)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCH-HHHHHH-H----CCCEEHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCCH
T ss_conf             99999999779935999726536-999998-2----78766233105612098886513698664436303455432110


Q ss_pred             --HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             --3333210566717983078667877768875882449999999998728998999999999999984256
Q gi|254780215|r  188 --LRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKI  257 (262)
Q Consensus       188 --~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~  257 (262)
                        .+.+.+.  -=++-+=||.|..+.         ..++.......++.- ++.+|..+.++-|+-+..|.-
T Consensus       297 ~~~~~l~~~--GV~vai~TD~~~~~~---------~~~l~~~m~l~~~~g-mtp~EaL~a~T~naA~alG~~  356 (406)
T COG1228         297 KPARKLIDA--GVKVAIGTDHNPGTS---------HGSLALEMALAVRLG-MTPEEALKAATINAAKALGLA  356 (406)
T ss_pred             HHHHHHHHC--CCEEEEECCCCCCCC---------HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCC
T ss_conf             669999986--996999778997640---------446999999999829-999999999999999981986


No 109
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=94.43  E-value=0.49  Score=27.62  Aligned_cols=135  Identities=19%  Similarity=0.171  Sum_probs=91.2

Q ss_pred             HHHHHHHHHCCCCCEE-EC-HHHHHHHHHHHHHHHHCCCCCCCC----------EECCCCHHHHHHHHCCCCEEECCCCC
Q ss_conf             9998766420442033-00-023335799985310003675331----------12146402344321035202023322
Q gi|254780215|r  113 LRHIEASRITGIPLVI-HS-RSADDDMAAILQEEMKKGPFPFVI----------HCFSSSQKLADICLELGGYISFTGMI  180 (262)
Q Consensus       113 ~~ql~lA~e~~~pv~i-H~-r~a~~~~l~iL~~~~~~~~~~~i~----------H~FsG~~~~~~~~l~~g~y~S~~g~i  180 (262)
                      +.-++.+++++.+|=+ |+ -+...|++++=     +  .+++.          |-=+=+-++++.+.+.|-.++++...
T Consensus       152 k~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s-----~--~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvIgv~~~~  224 (313)
T COG2355         152 KELVREMNELGIIIDLSHLSDKTFWDVLDLS-----K--APVVASHSNARALVDHPRNLSDEQLKAIAETGGVIGVNFIP  224 (313)
T ss_pred             HHHHHHHHHCCCEEEECCCCCCCHHHHHHCC-----C--CCEEEECCCCHHCCCCCCCCCHHHHHHHHHCCCEEEEEEEH
T ss_conf             9999999865977872235872299998545-----8--86687437724105888898899999999649979998645


Q ss_pred             CHHHH---H--HHH-------HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             11333---2--233-------33210566717983078667877768875882449999999998728998999999999
Q gi|254780215|r  181 TFPKY---D--ALR-------AIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTK  248 (262)
Q Consensus       181 ~~~~~---~--~~~-------e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~  248 (262)
                      .|-+.   .  .+.       -++..+..|.+-+=||-=+. +.+..|-. .+..++.....+.+ +|.+.+++.++.++
T Consensus       225 ~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~-~~~p~gle-d~~~l~~l~~~L~~-~G~~e~~i~~i~~~  301 (313)
T COG2355         225 AFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGG-TGPPDGLE-DVGKLPNLTAALIE-RGYSEEEIEKIAGE  301 (313)
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC-CCCCHHHC-CHHHHHHHHHHHHH-CCCCHHHHHHHHHH
T ss_conf             22368877899989999999999985384216864465678-88861012-75677999999997-69999999999987


Q ss_pred             HHHHHHHHH
Q ss_conf             999984256
Q gi|254780215|r  249 NALKLFSKI  257 (262)
Q Consensus       249 N~~~~f~~~  257 (262)
                      |+.|+|.+.
T Consensus       302 N~lRV~~~~  310 (313)
T COG2355         302 NWLRVLKEV  310 (313)
T ss_pred             HHHHHHHHH
T ss_conf             699999997


No 110
>PTZ00124 adenosine deaminase; Provisional
Probab=94.19  E-value=0.55  Score=27.29  Aligned_cols=127  Identities=18%  Similarity=0.183  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHCCCCCEEECHHH-----HHHHHHHHHHHHHCCCCCCCCEECC--CCHHHHHHHHCCCCEEECCCCCCHHH
Q ss_conf             9999876642044203300023-----3357999853100036753311214--64023443210352020233221133
Q gi|254780215|r  112 FLRHIEASRITGIPLVIHSRSA-----DDDMAAILQEEMKKGPFPFVIHCFS--SSQKLADICLELGGYISFTGMITFPK  184 (262)
Q Consensus       112 F~~ql~lA~e~~~pv~iH~r~a-----~~~~l~iL~~~~~~~~~~~i~H~Fs--G~~~~~~~~l~~g~y~S~~g~i~~~~  184 (262)
                      |..-.+.|++.++++.+|+=.+     .+++.+.+...  +.  .=|=|+..  .+.+.++.+.+.+.-+-+-++.....
T Consensus       208 f~~af~~Ar~~Gl~~T~HAGE~~~p~~i~~v~~ai~~l--~a--~RIGHGv~~~~Dp~L~~~l~e~~I~LEvCPtSNv~t  283 (362)
T PTZ00124        208 FKDIFDRLREAGVNLSVHAGEDVTPPNLNELYAAILDL--GV--KRIGHGIRVAESQELIDRVKEKDILLEVCPISNVLL  283 (362)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH--CC--CCCCCCEECCCCHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf             89999999986995435567557854599999999980--97--043575340779899999986595489867655334


Q ss_pred             -------HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             -------3223333210566717983078667877768875882449999999998728998999999999999984
Q gi|254780215|r  185 -------YDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF  254 (262)
Q Consensus       185 -------~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f  254 (262)
                             .-.++.+.+.  -=++-+.||-|-++.          .++..=+..+++..|.+.+++.+....-...-|
T Consensus       284 ~~v~~~~~HPi~~l~~~--G~~vtiNTDDp~vf~----------t~L~~Ey~~~~~~fgls~~d~~~l~~nai~asF  348 (362)
T PTZ00124        284 NNSKSMDTHPIRKLYDA--GVKVSVNSDDPGMFL----------TNIHDEYEELYTHLNFTLADFMKMNTWALEKSF  348 (362)
T ss_pred             CCCCCCCCCHHHHHHHC--CCEEEEECCCCCCCC----------CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf             56698321719999978--996999489930208----------988999999999819599999999999999876


No 111
>PRK00369 pyrC dihydroorotase; Provisional
Probab=94.07  E-value=0.58  Score=27.12  Aligned_cols=221  Identities=16%  Similarity=0.094  Sum_probs=103.1

Q ss_pred             EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEECC------CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             1686138887565--226899999999869989999167------98778999999985572332112445443344678
Q gi|254780215|r    2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAIAI------KVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE   73 (262)
Q Consensus         2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~~~------~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~   73 (262)
                      +||.|+|+..+.+  .+|+..--..|...|++.++.+..      +++.+...++.+++.   .+.-+|+|.--. +   
T Consensus        50 ~ID~HvH~rePG~~~kEd~~sgt~AAaaGGvTtv~~mPnt~P~~~~~~~~~~~~~~~~~~---s~vd~~~~~~v~-~---  122 (393)
T PRK00369         50 VIDMHVHLRGLKLSYKEDVASATSEAAYGGITLVADMPNTVPPLNTPEAIKEKLAELENY---SRVDYGVYSGVT-K---  122 (393)
T ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC---CCCCEEEEEECC-C---
T ss_conf             888044469999876575999999998099489998999999989899999999985648---724689994216-7---


Q ss_pred             HHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH-------------HHHHHHH
Q ss_conf             899885310013332100446775533221110246789999876642044203300023-------------3357999
Q gi|254780215|r   74 VLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA-------------DDDMAAI  140 (262)
Q Consensus        74 ~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a-------------~~~~l~i  140 (262)
                       .++++..+         |..|.-.|.+  +.+. ..+    +++....+..+++|+-+.             +.++..+
T Consensus       123 -~~~~l~~l---------g~~g~k~f~~--d~~~-~~~----~~~~~~~~~l~~~HaE~~~~~~~~~~~~r~~~~E~~ai  185 (393)
T PRK00369        123 -EYEEVDKL---------PIAGYKIYPE--DLER-EET----KRVLEKSKKLKILHPEIPLALKGLRRLRRNCWAEIAAL  185 (393)
T ss_pred             -CHHHHHHC---------CCCEEEEECC--CCCH-HHH----HHHHHHCCCCEEECCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf             -45557646---------6975999888--8878-999----99998679970994788777635255207458999999


Q ss_pred             HHHHHHCCCCCCCC-EECCCCHHHHHHHHCCCCEEEC-----------------CCCCCHH-HHHHHHHHHHCCCCCCEE
Q ss_conf             85310003675331-1214640234432103520202-----------------3322113-332233332105667179
Q gi|254780215|r  141 LQEEMKKGPFPFVI-HCFSSSQKLADICLELGGYISF-----------------TGMITFP-KYDALRAIARGIPMDRVL  201 (262)
Q Consensus       141 L~~~~~~~~~~~i~-H~FsG~~~~~~~~l~~g~y~S~-----------------~g~i~~~-~~~~~~e~v~~iPldriL  201 (262)
                      ...  .. ..++++ |-  .+.+.++.+.+.|...-+                 +|.+--+ ..+.+.+.+..  .|  .
T Consensus       186 ~~~--~~-~ar~Hi~h~--Ss~e~ir~AK~~G~t~Ev~phhL~l~~e~~~~~kv~PPLR~~~D~~aL~~~l~d--ID--~  256 (393)
T PRK00369        186 ELV--KG-AANVHITHA--SNPETVRIAKKLGFTVDITPHHLLVDGERDCLSKVNPPIRDYGERLKLLKALFE--VD--A  256 (393)
T ss_pred             HHH--HH-CCCEEEEEC--CCHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--CC--E
T ss_conf             998--61-496999936--849999999866990799756840255356673138998997899999987447--78--8


Q ss_pred             EEEC-CCCCCCCC---CC----CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             8307-86678777---68----87588244999999999872899899999999999998425
Q gi|254780215|r  202 VETD-SPYIVPVS---CQ----GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       202 lETD-sP~l~p~~---~r----~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      +=|| +|+-..+.   +.    |-..--..++.++..+ .-..++.+.+.+.+..|--++||.
T Consensus       257 IaSDHaPh~~eeK~~~f~~ap~Gi~GlEt~lplll~~V-~~g~lsl~~lv~l~s~nPAki~GL  318 (393)
T PRK00369        257 VASDHAPHSSWEKWMPFEICPPGIAALSFTPPFIYTLV-FKGLLSIERAVSLTSTNPSRILGI  318 (393)
T ss_pred             EEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             98178889978815654354687040788999999999-838899999999998879999598


No 112
>TIGR00674 dapA dihydrodipicolinate synthase; InterPro: IPR005263   Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue . Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC, IPR005264 from INTERPRO) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Sinorhizobium meliloti protein mosA , which is involved in the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry . Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.   This family represents a subclass of dihydrodipicolinate synthase. ; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process.
Probab=93.15  E-value=0.82  Score=26.11  Aligned_cols=157  Identities=18%  Similarity=0.236  Sum_probs=93.3

Q ss_pred             CHHHHHHHHHHCCCCEEEEECCCH-------HHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             689999999986998999916798-------778999999985572---3321124454433446788998853100133
Q gi|254780215|r   17 DRHDVIMRAHQANVLKMIAIAIKV-------KDFVPLIKLCQDYPS---SIFCSVGTHPCHAHEENEVLVDELVCLASHP   86 (262)
Q Consensus        17 d~~~~i~~a~~~gv~~~i~~~~~~-------~~~~~~~~l~~~~p~---~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~   86 (262)
                      -++.+|+.-..+|+.++|.+||+=       ++-.++++.+-+.-+   .|++..|      ...+.+.++.. ..+   
T Consensus        20 ~Le~li~~~~~~G~da~V~~GTTGEs~TLs~EE~~~~i~~~~~~~~~R~pvIaG~G------sN~T~Eai~l~-~~a---   89 (288)
T TIGR00674        20 ALEKLIDFQIENGTDAIVVVGTTGESATLSHEEHKKVIEFVVDLVKGRVPVIAGTG------SNATEEAIELT-KFA---   89 (288)
T ss_pred             HHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCC------CCHHHHHHHHH-HHH---
T ss_conf             99999998997079858971355886446888889999999877628778985377------32589999999-999---


Q ss_pred             CCCEECCCCCCC------CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE---CHHHH---HHHHHHHHHHHHC-------
Q ss_conf             321004467755------3322111024678999987664204420330---00233---3579998531000-------
Q gi|254780215|r   87 RVVAIGETGLDR------YHNAHTIEEQKVVFLRHIEASRITGIPLVIH---SRSAD---DDMAAILQEEMKK-------  147 (262)
Q Consensus        87 ~~~aIGEiGLD~------~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH---~r~a~---~~~l~iL~~~~~~-------  147 (262)
                           =++|.|-      ||+..+.+-|.+-|++   +|.+-++|++|=   +|-+-   .|++.-|.+....       
T Consensus        90 -----~~~G~dg~L~vtPyYNKP~q~Gl~~HFka---ia~~~~lPiiLYNvPsRTg~~l~peTv~rLA~~~~NI~aiKEa  161 (288)
T TIGR00674        90 -----EKLGVDGFLVVTPYYNKPTQEGLYQHFKA---IAEEVDLPIILYNVPSRTGVSLEPETVKRLAEEPNNIVAIKEA  161 (288)
T ss_pred             -----HHCCCCEEECCCCCCCCCCCCHHHHHHHH---HHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEEC
T ss_conf             -----86895688458875518882138999999---9987169889842876410178628999973016770688726


Q ss_pred             -----------CCCC-CCCEECCCCHHHHHHHHCCCC--EEECCCCCCHHHHHHHHHHHHC
Q ss_conf             -----------3675-331121464023443210352--0202332211333223333210
Q gi|254780215|r  148 -----------GPFP-FVIHCFSSSQKLADICLELGG--YISFTGMITFPKYDALRAIARG  194 (262)
Q Consensus       148 -----------~~~~-~i~H~FsG~~~~~~~~l~~g~--y~S~~g~i~~~~~~~~~e~v~~  194 (262)
                                 ...+ --|-=|||+=+..-.++..|.  .+|+...+.   .+..+|+++.
T Consensus       162 ~g~l~~~~~i~~~~p~~dF~vlsGDD~l~l~~~~~Gg~GVISV~~N~~---P~~~~emv~~  219 (288)
T TIGR00674       162 TGNLERISEIKAITPDDDFVVLSGDDALTLPILALGGKGVISVTSNVA---PKLMKEMVEN  219 (288)
T ss_pred             CCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCEEEEHHHHHH---HHHHHHHHHH
T ss_conf             888899999998668985388847861136999818961673005556---8999999999


No 113
>TIGR01430 aden_deam adenosine deaminase; InterPro: IPR006330    This family includes the experimentally verified adenosine deaminases of mammals and Escherichia coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. ; GO: 0004000 adenosine deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process.
Probab=93.15  E-value=0.82  Score=26.11  Aligned_cols=145  Identities=18%  Similarity=0.239  Sum_probs=92.8

Q ss_pred             CCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HCCCCCEEECH--HH--H---HHHHHHHHHHHHCCCCCCC
Q ss_conf             01333210044677553322111024678999987664--20442033000--23--3---3579998531000367533
Q gi|254780215|r   83 ASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASR--ITGIPLVIHSR--SA--D---DDMAAILQEEMKKGPFPFV  153 (262)
Q Consensus        83 ~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~--e~~~pv~iH~r--~a--~---~~~l~iL~~~~~~~~~~~i  153 (262)
                      ..+..|+||   |||-.....+- - -.-|.+-.+.|+  +.++++.+|+=  ..  .   .+.++.|+--+       |
T Consensus       165 ~~~~~ivg~---gLagdE~~~ps-~-~~~F~~~f~~Arsl~~Gl~~T~HAGlhE~~g~~~v~~Ald~l~~~R-------I  232 (346)
T TIGR01430       165 YKEQGIVGF---GLAGDERGGPS-S-PEKFVRAFAIARSLELGLKLTVHAGLHELGGPESVREALDDLGATR-------I  232 (346)
T ss_pred             HCCCCEEEE---ECCCCCCCCCC-C-HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCC-------C
T ss_conf             347856898---52654668898-8-7789999999876516983563037534577467999998538851-------0


Q ss_pred             CEECC--CCHHHHHH-HHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCE-------EEEECCCCCCCCCCCCCCCCHH-
Q ss_conf             11214--64023443-2103520202332211333223333210566717-------9830786678777688758824-
Q gi|254780215|r  154 IHCFS--SSQKLADI-CLELGGYISFTGMITFPKYDALRAIARGIPMDRV-------LVETDSPYIVPVSCQGKRNEPA-  222 (262)
Q Consensus       154 ~H~Fs--G~~~~~~~-~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldri-------LlETDsP~l~p~~~r~~~n~P~-  222 (262)
                      =|...  -+++.+++ +.+.+..|-+=|...+.  -..-+-....|+-|+       -|.||-|-..     |     + 
T Consensus       233 gHG~~~~eDp~L~~rlL~~~~i~le~CP~SN~~--l~~v~~~~~~Pl~~f~~~G~~~~lNsDDPa~f-----~-----~f  300 (346)
T TIGR01430       233 GHGVRALEDPELLKRLLAEEQITLEVCPLSNLA--LGVVKSLAEHPLKRFLEAGVKVTLNSDDPAYF-----G-----SF  300 (346)
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHH--CCCCCCCCCHHHHHHHHCCCCEEECCCCCCHH-----H-----HE
T ss_conf             024000148789999998679558875211111--01358865237899886568577448771101-----0-----02


Q ss_pred             HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
Q ss_conf             4999999999872-89989999999999999
Q gi|254780215|r  223 YVVNTAKALAKEK-DVSYEDLMEETTKNALK  252 (262)
Q Consensus       223 ~i~~~~~~iA~i~-~~~~eei~~~~~~N~~~  252 (262)
                      +|..-++..++-. +++.+++.+.. +|+.+
T Consensus       301 ~L~~~Y~~~~~~~P~l~~~~~~~l~-~Na~~  330 (346)
T TIGR01430       301 YLTEEYEIAAKDAPGLTEEELKQLA-RNALE  330 (346)
T ss_pred             ECHHHHHHHHHHCCCCCHHHHHHHH-HHHHH
T ss_conf             3078999998745788888999999-98887


No 114
>PRK05985 cytosine deaminase; Provisional
Probab=92.76  E-value=0.93  Score=25.75  Aligned_cols=138  Identities=12%  Similarity=0.024  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHCCCCCEEECHHHH-------HHHHHHHHHHHHCCCCCCCCEECCC---CHHHHHHHHCCCCEEECCCCC
Q ss_conf             899998766420442033000233-------3579998531000367533112146---402344321035202023322
Q gi|254780215|r  111 VFLRHIEASRITGIPLVIHSRSAD-------DDMAAILQEEMKKGPFPFVIHCFSS---SQKLADICLELGGYISFTGMI  180 (262)
Q Consensus       111 vF~~ql~lA~e~~~pv~iH~r~a~-------~~~l~iL~~~~~~~~~~~i~H~FsG---~~~~~~~~l~~g~y~S~~g~i  180 (262)
                      .++.-.++|+++++|+-+|+-...       +.+.+........ ..-.+-||+.-   +.+.+.+..+.....+++...
T Consensus       193 ~l~~~~~lA~~~g~~i~iH~~e~~~~~~~~~~~~~~~~~~~gl~-g~v~~~H~~~l~~l~~~~~~~~~~~~a~~~v~~~~  271 (398)
T PRK05985        193 QLDIVFGLAERHGVGIDIHLHEPGELGAFQLELIAARTRALGMQ-GRVAVSHAFCLGDLPERELDRLAARLAEAGVAIMT  271 (398)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEHHHHCCCCCHHHHHHHHHHHHCCCCCEEC
T ss_conf             99999999998599868987577771077999999999982999-99897755541269999999999998529955012


Q ss_pred             CHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHH
Q ss_conf             113332---2333321056671798307866787776887588244999999999872899899----999999999998
Q gi|254780215|r  181 TFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYED----LMEETTKNALKL  253 (262)
Q Consensus       181 ~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~ee----i~~~~~~N~~~~  253 (262)
                      +.+...   .++++.+ -. =++-+=||+.--.-.|+    |.+.+ ...+..++...+...++    ..+..+.|.-|.
T Consensus       272 ~~~~~~~~~pv~~l~~-aG-V~V~LGtDg~~~~~~p~----~~~d~-l~~a~~~~~~~~~~~~~~~~~al~maT~~gAra  344 (398)
T PRK05985        272 NAPGSRPVPPVAALRE-AG-VTVFGGNDGIRDTWWPY----GNGDM-LERAMLIGYRSGFRTDDELEVALDCVTHGGARA  344 (398)
T ss_pred             CCCCCCCCCCHHHHHH-CC-CCEEECCCCCCCCCCCC----CCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             6876789874999997-69-96896378788877877----88789-999999997528998799999999998999997


Q ss_pred             HHH
Q ss_conf             425
Q gi|254780215|r  254 FSK  256 (262)
Q Consensus       254 f~~  256 (262)
                      +|.
T Consensus       345 LGl  347 (398)
T PRK05985        345 LGL  347 (398)
T ss_pred             CCC
T ss_conf             599


No 115
>PRK08123 histidinol-phosphatase; Reviewed
Probab=92.22  E-value=1.1  Score=25.30  Aligned_cols=68  Identities=18%  Similarity=0.150  Sum_probs=43.7

Q ss_pred             CEEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEECCC------------------HHH----HHHHHHHHHHCCCC
Q ss_conf             91686138887565--2268999999998699899991679------------------877----89999999855723
Q gi|254780215|r    1 MLIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAIAIK------------------VKD----FVPLIKLCQDYPSS   56 (262)
Q Consensus         1 M~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~~~~------------------~~~----~~~~~~l~~~~p~~   56 (262)
                      |..|.|+|-..-..  .+.+++.+++|.+.|+..+..+...                  ..+    +..+.+|.++|++.
T Consensus         1 m~~D~H~HT~~s~h~~~~~lee~v~~Ai~~Gl~~ig~TdH~p~~~~~~~~~~~~~~~m~~~~~~~Y~~~i~~lkekY~~~   80 (266)
T PRK08123          1 MKRDGHTHTPFCPHGSKDSLEAYIERAIELGFTEITFTEHAPLPPGFIDPTPRQDSAMAMEQLERYIKELNELKKKYKGQ   80 (266)
T ss_pred             CCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99544558899999888759999999998799989974799886433576511023478889999999999999982678


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             321124454433
Q gi|254780215|r   57 IFCSVGTHPCHA   68 (262)
Q Consensus        57 i~~a~GiHP~~~   68 (262)
                      +-.-+|+==-+.
T Consensus        81 I~I~~GiE~dy~   92 (266)
T PRK08123         81 IKIRIGLEVDYI   92 (266)
T ss_pred             CEEEEEEEECCC
T ss_conf             818998874446


No 116
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=92.22  E-value=0.9  Score=25.85  Aligned_cols=105  Identities=18%  Similarity=0.285  Sum_probs=64.3

Q ss_pred             EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC-----------CCHHHH--HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             68613888756522689999999986998999916-----------798778--99999998557233211244544334
Q gi|254780215|r    3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA-----------IKVKDF--VPLIKLCQDYPSSIFCSVGTHPCHAH   69 (262)
Q Consensus         3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~-----------~~~~~~--~~~~~l~~~~p~~i~~a~GiHP~~~~   69 (262)
                      ||+|.|+-.+       +.++.|..+||..++--|           +++..|  .+.++-++.+|-++ .-+|=   --.
T Consensus       132 iDtHiHfI~P-------qqi~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d~~p~N~-g~lgK---Gn~  200 (568)
T COG0804         132 IDTHIHFICP-------QQIEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAADGLPMNI-GFLGK---GNA  200 (568)
T ss_pred             CCCEEEEECH-------HHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE-EEEEC---CCC
T ss_conf             3212688667-------889999863867886486687777654011587879999998622485356-77624---777


Q ss_pred             CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
Q ss_conf             46788998853100133321004467755332211102467899998766420442033000
Q gi|254780215|r   70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR  131 (262)
Q Consensus        70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r  131 (262)
                      .......++++          -|-|||-.+.   +|-.--.+...-|..|.+++.-|.||+-
T Consensus       201 s~~~~L~Eqi~----------aGa~GlKlHE---DWG~TpaaI~~~L~VAD~~DvqVaiHtD  249 (568)
T COG0804         201 SNPAPLAEQIE----------AGAIGLKLHE---DWGATPAAIDTCLSVADEYDVQVAIHTD  249 (568)
T ss_pred             CCCHHHHHHHH----------HCCCEEEEEC---CCCCCHHHHHHHHHHHHHHCEEEEEEEC
T ss_conf             89566899986----------0541357611---1489879999887643311637999606


No 117
>PRK09061 D-glutamate deacylase; Validated
Probab=91.94  E-value=1.2  Score=25.09  Aligned_cols=27  Identities=15%  Similarity=0.208  Sum_probs=21.4

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999987289989999999999999842
Q gi|254780215|r  229 KALAKEKDVSYEDLMEETTKNALKLFS  255 (262)
Q Consensus       229 ~~iA~i~~~~~eei~~~~~~N~~~~f~  255 (262)
                      .++-+-+.++++++.+.++.|.-++|+
T Consensus       394 ~~vr~~~~lsLe~aV~~~T~~pA~~~~  420 (496)
T PRK09061        394 EYVRERKAVSLLEALRKCTLMPAQILE  420 (496)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             986636854899999999899999885


No 118
>pfam07969 Amidohydro_3 Amidohydrolase family.
Probab=91.74  E-value=1.2  Score=24.95  Aligned_cols=135  Identities=14%  Similarity=0.127  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHH-
Q ss_conf             78999987664204420330002--333579998531000367533112146402344321035202023322113332-
Q gi|254780215|r  110 VVFLRHIEASRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYD-  186 (262)
Q Consensus       110 ~vF~~ql~lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~-  186 (262)
                      +-+++.++.|.+.+.++-+|+-+  +-+.+++.+......  ...+.||..-+.+.++++.++|...|+.+.-.+.... 
T Consensus       213 ~~~~~~v~~a~~~G~~v~~Ha~gd~ai~~~l~a~~~~~~~--~~~i~H~~~~~~~~~~~~~~lg~~~~~~p~~~~~~~~~  290 (392)
T pfam07969       213 EELEELVAAAHAAGLQVRVHASGDAAIDAVLNAYEAVLAD--LGRLIHAGVATTDTIDRAAELGLRADTQPHFLAYDGYW  290 (392)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHH--CCEEEECCCCCHHHHHHHHHCCCCEEECCCEECCCCHH
T ss_conf             9999999999986994799855426799999999997654--68763013389889999998298156113410353046


Q ss_pred             --------------HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH-----------HHHHHHCCCHHH
Q ss_conf             --------------2333321056671798307866787776887588244999999-----------999872899899
Q gi|254780215|r  187 --------------ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAK-----------ALAKEKDVSYED  241 (262)
Q Consensus       187 --------------~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~-----------~iA~i~~~~~ee  241 (262)
                                    ..+.+++ -. =++-+=||+|-..+.|+        .....+-           .+..-..+|++|
T Consensus       291 ~~~~~~~~r~~~~~p~~~l~~-~G-v~v~~gsD~pv~~~~P~--------~~~~~a~~r~~~~~~~~~~~~~~~~ls~~e  360 (392)
T pfam07969       291 DRSRLGPERARGSLPIKLLLN-AG-VKVALGSDAPVATYDPW--------SGIGAAVMRRTAEMLEGRVLKPDERLSLEE  360 (392)
T ss_pred             HHHCCCHHHHHCCCHHHHHHH-CC-CEEEEECCCCCCCCCHH--------HHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             652242777641344999997-59-88997378988886779--------999998515776678876658256879999


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999998425
Q gi|254780215|r  242 LMEETTKNALKLFSK  256 (262)
Q Consensus       242 i~~~~~~N~~~~f~~  256 (262)
                      ..+..+.|.-+.++.
T Consensus       361 Al~~~T~~~A~~~g~  375 (392)
T pfam07969       361 ALALYTRGPAYALGL  375 (392)
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999999999999487


No 119
>KOG3968 consensus
Probab=91.40  E-value=1.3  Score=24.72  Aligned_cols=223  Identities=13%  Similarity=0.049  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHCCCCEEEE-ECCCHHHHHHHHHHHHHCCCCCCCCCCCC--------CCCCCCCCHHHHHHHHHHCC----
Q ss_conf             899999999869989999-16798778999999985572332112445--------44334467889988531001----
Q gi|254780215|r   18 RHDVIMRAHQANVLKMIA-IAIKVKDFVPLIKLCQDYPSSIFCSVGTH--------PCHAHEENEVLVDELVCLAS----   84 (262)
Q Consensus        18 ~~~~i~~a~~~gv~~~i~-~~~~~~~~~~~~~l~~~~p~~i~~a~GiH--------P~~~~~~~~~~~~~l~~l~~----   84 (262)
                      ...+++++.++|.+.+.. .+.+.+.....++.+.++..++  .+|.-        |....+..+...+.-..+.+    
T Consensus       122 ~~~vv~~mL~~GTTt~~~f~~~~~~s~~ll~~~~~~~G~R~--~igkv~m~~~~~~~p~~~~~~E~si~~t~~~i~~~~~  199 (439)
T KOG3968         122 YQRVVKEMLRAGTTTVEYFSTLHLDSELLLARAAIRAGQRA--LIGKVCMDCNAHAVPKGVETTEESIESTEDLIPKLEK  199 (439)
T ss_pred             HHHHHHHHHHCCCEEHHHHHCCCCHHHHHHHHHHHHHCCCE--EEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999975954066664057316789999999727721--5321012168889876613379999999999898876


Q ss_pred             --CCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHH---HHHHHH----------HHHCCC
Q ss_conf             --33321004467755332211102467899998766420442033000233357---999853----------100036
Q gi|254780215|r   85 --HPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDM---AAILQE----------EMKKGP  149 (262)
Q Consensus        85 --~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~---l~iL~~----------~~~~~~  149 (262)
                        .+.+.-+=+++.+-    ..   -+.+|+.--+||+..++|+.+|--.--+|+   .++..+          +..-.+
T Consensus       200 ~~~~~~~~~vt~~fa~----~c---~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~~~y~~~yd~~~lL~~  272 (439)
T KOG3968         200 LKREKVNPIVTPRFAA----SC---SKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEKLSYTDVYDKGGLLTE  272 (439)
T ss_pred             HCCCCCCCCCCCCCCC----CC---CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHCCCCH
T ss_conf             3347778732655357----77---4046788889988631145556553678899999852201361678987466136


Q ss_pred             CCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHH-H--HHHHHHHHHCCCCCCEEEEECC-CCCCCCCCCCCCCCHHHHH
Q ss_conf             7533112146402344321035202023322113-3--3223333210566717983078-6678777688758824499
Q gi|254780215|r  150 FPFVIHCFSSSQKLADICLELGGYISFTGMITFP-K--YDALRAIARGIPMDRVLVETDS-PYIVPVSCQGKRNEPAYVV  225 (262)
Q Consensus       150 ~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~-~--~~~~~e~v~~iPldriLlETDs-P~l~p~~~r~~~n~P~~i~  225 (262)
                      ..++.|+---+-+.++-+-++|+-+|.=|.-.+. +  -..+|++++.  -=.+=+-||. |+-.|..+|       .-.
T Consensus       273 ktvlaH~~hl~d~ei~~l~k~g~svshCP~Sn~~L~sG~~~vr~lL~~--~v~VgLGtDv~~~s~l~a~r-------~A~  343 (439)
T KOG3968         273 KTVLAHLEHLSDEEIELLAKRGCSVSHCPTSNSILGSGIPRVRELLDI--GVIVGLGTDVSGCSILNALR-------QAM  343 (439)
T ss_pred             HHHHHHHEECCCHHHHHHHHCCCCEEECCCCHHHHCCCCCCHHHHHHC--CCEEEECCCCCCCCCHHHHH-------HHH
T ss_conf             767664110471167899862874477776403430688458999751--81673168766641089999-------998


Q ss_pred             HHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999987---289989999999999999842568
Q gi|254780215|r  226 NTAKALAKE---KDVSYEDLMEETTKNALKLFSKIS  258 (262)
Q Consensus       226 ~~~~~iA~i---~~~~~eei~~~~~~N~~~~f~~~~  258 (262)
                      .+.+.++..   .++|++|+....+-|.-+..|+-+
T Consensus       344 ~~s~hL~~~~~~~~Ls~~e~L~lATi~GA~aLg~d~  379 (439)
T KOG3968         344 PMSMHLACVLDVMKLSMEEALYLATIGGAKALGRDD  379 (439)
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHCCCCC
T ss_conf             999888742673248999999998505165406777


No 120
>TIGR03473 HpnK hopanoid biosynthesis associated protein HpnK. The sequences represented by this model are members of the pfam04794 "YdjC-like" family of uncharacterized proteins. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0976) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnK) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopanoid biosynthesis locus was described consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a ph
Probab=90.81  E-value=0.51  Score=27.51  Aligned_cols=57  Identities=12%  Similarity=0.190  Sum_probs=41.9

Q ss_pred             CCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             875652268999999998699899991679877899999998557233211244544334
Q gi|254780215|r   10 LLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAH   69 (262)
Q Consensus        10 ~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~   69 (262)
                      |+--+......-+.++.+.|+..-..+-++-..|..+.++++.+|+   ..+|+|=....
T Consensus         9 DDfGl~~~vn~gI~~~~~~GivtstS~Mvn~p~~~~A~~l~k~~p~---l~vGlHltLt~   65 (283)
T TIGR03473         9 DDFGLSLEVNEAVEKAHRDGILTAASLMVGAPAAEDAVERARRLPG---LGVGLHLVLVD   65 (283)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCC---CCEEEEEEECC
T ss_conf             5678887789999999987984676653689149999999974899---98798787058


No 121
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=90.36  E-value=1.7  Score=24.09  Aligned_cols=141  Identities=18%  Similarity=0.103  Sum_probs=87.2

Q ss_pred             HHHHHH-HHHHHHCCCCCEE-EC-HHHHHHHHHHHHH--HHHCCCCCC-CCEECCCCHHHHHHHHCCCCEEECCCCCCHH
Q ss_conf             789999-8766420442033-00-0233357999853--100036753-3112146402344321035202023322113
Q gi|254780215|r  110 VVFLRH-IEASRITGIPLVI-HS-RSADDDMAAILQE--EMKKGPFPF-VIHCFSSSQKLADICLELGGYISFTGMITFP  183 (262)
Q Consensus       110 ~vF~~q-l~lA~e~~~pv~i-H~-r~a~~~~l~iL~~--~~~~~~~~~-i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~  183 (262)
                      .-|-++ ++-..+++..|=+ |+ .++..+++++-+.  ...+...+. .=|.=+=+-++++.+.+.|--++++..-.|-
T Consensus       153 t~~G~~~v~~mn~lgm~iDvSH~s~~~~~d~~~~s~~PviaSHSn~ral~~h~RNl~D~~i~aia~~gGviGi~~~~~fl  232 (309)
T cd01301         153 TPFGKELVREMNRLGIIIDLSHLSERTFWDVLDISNAPVIASHSNARALCDHPRNLTDAQLKAIAETGGVIGVNFYPAFL  232 (309)
T ss_pred             CHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCHHHH
T ss_conf             98999999999860967754879889999999845899898578833214887889999999999849889995146441


Q ss_pred             H----------HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             3----------322333321056671798307866787776887588244999999999872899899999999999998
Q gi|254780215|r  184 K----------YDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKL  253 (262)
Q Consensus       184 ~----------~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~  253 (262)
                      +          .+.+.-+++.+..|.+-+=||-.... .+. .....++.++.+++.+-+ +|.+.+++.++...|++|+
T Consensus       233 ~~~~~~~~~~~~~Hi~~i~~l~G~dhVgiGsDfdg~~-~~~-~~l~d~~~~p~l~~~L~~-rG~s~~~i~ki~g~N~lRV  309 (309)
T cd01301         233 SPGADATLDDVVRHIDYIVDLIGIDHVGLGSDFDGIG-GTP-GGLEDVSDLPNLTAELLE-RGYSEEEIEKIAGGNFLRV  309 (309)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCC-CCC-CCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHCCCCC
T ss_conf             7999999999999999999971988289897889999-997-887798789999999998-6989999999953270119


No 122
>pfam02679 ComA (2R)-phospho-3-sulfolactate synthase (ComA). In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyses the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyses the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalysed reaction is analogous to those reactions catalysed by beta-elimination enzymes that proceed through an enolate intermediate.
Probab=90.34  E-value=0.85  Score=26.01  Aligned_cols=169  Identities=14%  Similarity=0.169  Sum_probs=93.1

Q ss_pred             HHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCC
Q ss_conf             99869989999167987789999999855723321124454433446788998853100133321004467755332211
Q gi|254780215|r   25 AHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHT  104 (262)
Q Consensus        25 a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~  104 (262)
                      =+..|++.++..|..+...+..++.+..|=+.+..+.|-+-    =..++++.+..++..+..+        +-|-..+-
T Consensus        10 PR~~GlT~v~D~gl~~~~~eD~Le~~g~yID~~K~g~gt~~----l~p~~~l~eKI~l~~~~~V--------~v~~GGtl   77 (245)
T pfam02679        10 PRRTGLTMVLDKGLGPRFLEDLLESAGDYIDFLKFGWGTSA----LMPEDILKEKIDLAHEHGV--------YVYTGGTL   77 (245)
T ss_pred             CCCCCCEEEECCCCCHHHHHHHHHHHHHHEEEEEECCCEEE----ECCHHHHHHHHHHHHHCCC--------EEECCCHH
T ss_conf             85568269944999989999999861333358997687650----1788999999999998599--------48479699


Q ss_pred             C--HHHHHHHHHHHHHHHHCCCCCEEECHHH----HHHHHHHHHHHHHCCCCCCCC--EE----------CCCCHHHHHH
Q ss_conf             1--0246789999876642044203300023----335799985310003675331--12----------1464023443
Q gi|254780215|r  105 I--EEQKVVFLRHIEASRITGIPLVIHSRSA----DDDMAAILQEEMKKGPFPFVI--HC----------FSSSQKLADI  166 (262)
Q Consensus       105 ~--e~Q~~vF~~ql~lA~e~~~pv~iH~r~a----~~~~l~iL~~~~~~~~~~~i~--H~----------FsG~~~~~~~  166 (262)
                      .  ..++..|+..++.+++++...+==+.+.    +++-.++++.....+ .+++-  .+          -.-=.+++++
T Consensus        78 fE~a~~~~~~d~y~~~~~~lGf~~iEiSdg~i~i~~~~~~~~I~~~~~~G-~~v~~EvG~K~~~~~~~~~~~~~I~~~~~  156 (245)
T pfam02679        78 FEIAILQGKFDEYLRECKELGFDAIEISDGSIELPEEERLRLIRKAKKAG-FKVLSEVGKKDPEADSELTPDELIEQIER  156 (245)
T ss_pred             HHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999738399999999986998899568844689899999999999789-97966415467543456799999999999


Q ss_pred             HHCCCCEEEC-----CC--CCCHH----HHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             2103520202-----33--22113----33223333210566717983078
Q gi|254780215|r  167 CLELGGYISF-----TG--MITFP----KYDALRAIARGIPMDRVLVETDS  206 (262)
Q Consensus       167 ~l~~g~y~S~-----~g--~i~~~----~~~~~~e~v~~iPldriLlETDs  206 (262)
                      .++.|.+.=+     ||  -++..    +.+-+.+++..+|+++++.|-..
T Consensus       157 ~LeaGA~~ViiEarEsg~~Gi~~~~g~~r~~~i~~I~~~~~~~~iifEAp~  207 (245)
T pfam02679       157 DLEAGADKVIIEARESGGVGLYDSDGEVRTDLVEEILERLGLEKLIFEAPQ  207 (245)
T ss_pred             HHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHCEEEECCC
T ss_conf             997698289985101487565088988718899999973883008997898


No 123
>pfam04794 YdjC YdjC-like protein. Family of YdjC-like proteins. This region is possibly involved in the the cleavage of cellobiose-phosphate.
Probab=90.23  E-value=1.4  Score=24.63  Aligned_cols=60  Identities=17%  Similarity=0.238  Sum_probs=44.4

Q ss_pred             CCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             888756522689999999986998999916798778999999985572332112445443344
Q gi|254780215|r    8 HLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHE   70 (262)
Q Consensus         8 HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~   70 (262)
                      |-|+.-+......-|.++.+.|+..-..+-++-..|..+.++++.+|+ +  .+|+|=.....
T Consensus         6 ~ADD~G~s~~vn~gI~~~~~~G~ltstS~M~n~p~~~~a~~~~k~~p~-l--~vGlHlnLt~g   65 (261)
T pfam04794         6 NADDFGLSPGVNRGIIEAHRAGIVTSTSLMVNMPAFEHAAALAKRNPD-L--GVGLHLTLTAG   65 (261)
T ss_pred             ECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCC-C--CEEEEEEECCC
T ss_conf             677688987788999999987981678871078159999999972899-9--87888773689


No 124
>PRK08609 hypothetical protein; Provisional
Probab=90.06  E-value=1.6  Score=24.10  Aligned_cols=15  Identities=0%  Similarity=-0.121  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHCCCCE
Q ss_conf             899999999869989
Q gi|254780215|r   18 RHDVIMRAHQANVLK   32 (262)
Q Consensus        18 ~~~~i~~a~~~gv~~   32 (262)
                      +++++..|.+.|..+
T Consensus       351 ~~ema~aa~~~G~~y  365 (570)
T PRK08609        351 IEEMVEACIAKGYKF  365 (570)
T ss_pred             HHHHHHHHHHCCCEE
T ss_conf             999999999859808


No 125
>PRK12310 hydroxylamine reductase; Provisional
Probab=89.73  E-value=1.9  Score=23.76  Aligned_cols=187  Identities=18%  Similarity=0.189  Sum_probs=109.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHC-----------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--------------
Q ss_conf             89999167987789999999855-----------72332112445443344678899885310013--------------
Q gi|254780215|r   31 LKMIAIAIKVKDFVPLIKLCQDY-----------PSSIFCSVGTHPCHAHEENEVLVDELVCLASH--------------   85 (262)
Q Consensus        31 ~~~i~~~~~~~~~~~~~~l~~~~-----------p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~--------------   85 (262)
                      ..|++.|.|+.+.+..++-.+.-           |-+-||.+-=+||.+-.+...|+++-+++..=              
T Consensus       123 ~~ILVSGHDL~dL~~LL~QTeg~GInVYTHgEMLPAH~YP~Lkky~hL~GnyG~AW~~Q~~eF~~fpGpIl~TTNCi~pP  202 (429)
T PRK12310        123 KAILVTGHNLKALEELLKQTEGKGINVYTHSEMLPAHGYPELRKYKHLKGNLGKAWYDQRKLFEKFPGAILGTTNCVMPP  202 (429)
T ss_pred             CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf             88999798999999999863799930771765441356800057875566784377758899730998889844777778


Q ss_pred             -----CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECC--
Q ss_conf             -----3321004467755332211102467899998766420442033000233357999853100036753311214--
Q gi|254780215|r   86 -----PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFS--  158 (262)
Q Consensus        86 -----~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~Fs--  158 (262)
                           +|+.--|.+|.+-.+--.     -.=|..-|+.|.+..-+-..-.                    +-+.-.|.  
T Consensus       203 ~~sY~dRifTt~~vg~pG~~hI~-----~~DFs~vI~~Al~~~~~~~~~~--------------------~~i~~GF~h~  257 (429)
T PRK12310        203 KGSYADRMFTYGIAGLEGVQHIE-----NDDFTPLIEKALELPELEKESD--------------------ETLTTGFHHT  257 (429)
T ss_pred             CHHHCCCCEECCCCCCCCCEECC-----CCCCHHHHHHHHHCCCCCCCCC--------------------CEEEECCCHH
T ss_conf             34551044044777689972478-----8898899999985879977889--------------------7487263388


Q ss_pred             CCHHHHHHHH---CCC---CEEECCCCCCHH-HHHHHHHHHHCCCCCCEEEEECC-CCCC-----------CCCC-CCCC
Q ss_conf             6402344321---035---202023322113-33223333210566717983078-6678-----------7776-8875
Q gi|254780215|r  159 SSQKLADICL---ELG---GYISFTGMITFP-KYDALRAIARGIPMDRVLVETDS-PYIV-----------PVSC-QGKR  218 (262)
Q Consensus       159 G~~~~~~~~l---~~g---~y~S~~g~i~~~-~~~~~~e~v~~iPldriLlETDs-P~l~-----------p~~~-r~~~  218 (262)
                      -=...+.+.+   +.|   -+|-++|.=.-+ ...=.+|+++++|.|.+.|-.-. -|-+           |.-. -|+=
T Consensus       258 ~vl~~A~~vveaVK~G~Ir~FflvgGCDG~~~~R~YYtefa~~~P~DtvILTl~CgKyRfN~ldlG~I~GIPRlLD~GQC  337 (429)
T PRK12310        258 TVLSLADKIIEAVKAGKIRRFFVIGGCDAPGKGREYYRELATSLPKDTVILTLSCGKFRFNDLDFGTIEGIPRYIDLGQC  337 (429)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             89877789999996499627999812689998862599999878997299864312332357776675883443236665


Q ss_pred             CCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             882449999999998728998999
Q gi|254780215|r  219 NEPAYVVNTAKALAKEKDVSYEDL  242 (262)
Q Consensus       219 n~P~~i~~~~~~iA~i~~~~~eei  242 (262)
                      |.......++.++|+..++++.++
T Consensus       338 NDsYsai~IA~aLaeaf~~~VNdL  361 (429)
T PRK12310        338 NDSISAVKIALALAEAFGCEVNDL  361 (429)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             448999999999999868996567


No 126
>PRK07945 hypothetical protein; Provisional
Probab=88.91  E-value=1.9  Score=23.63  Aligned_cols=33  Identities=15%  Similarity=0.010  Sum_probs=25.4

Q ss_pred             EEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             861388875652268999999998699899991
Q gi|254780215|r    4 DTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAI   36 (262)
Q Consensus         4 D~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~   36 (262)
                      |-|+|-+..+-...++++.+.|...|.+++.++
T Consensus        99 DLH~HT~wSDG~~sieeMa~aA~~lGyeYlaIT  131 (335)
T PRK07945         99 DLHLHSDWSDGGSPIEEMMATAAALGHEYCALT  131 (335)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf             653378845797869999999998398279980


No 127
>PRK05290 hydroxylamine reductase; Provisional
Probab=88.80  E-value=2.2  Score=23.33  Aligned_cols=189  Identities=17%  Similarity=0.149  Sum_probs=108.9

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHC-----------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--------------
Q ss_conf             89999167987789999999855-----------72332112445443344678899885310013--------------
Q gi|254780215|r   31 LKMIAIAIKVKDFVPLIKLCQDY-----------PSSIFCSVGTHPCHAHEENEVLVDELVCLASH--------------   85 (262)
Q Consensus        31 ~~~i~~~~~~~~~~~~~~l~~~~-----------p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~--------------   85 (262)
                      ..|++.|.|+.+.+..++-.+.-           |-+-||.+-=+||.+-.+...|+++-+++..=              
T Consensus       233 ~~ILVSGHDL~DLe~LL~QTeg~GInVYTHgEMLPAH~YP~lkKy~HL~GNyG~AW~~Q~~EF~~FpGpIl~TTNCi~pP  312 (540)
T PRK05290        233 KGILVSGHDLKDLEELLEQTEGTGINVYTHGEMLPAHGYPELKKYPHLVGNYGSAWQNQQKEFASFPGPILMTTNCIIPP  312 (540)
T ss_pred             CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf             87999698989999999974078857986665442456801144751024664187878899860887889854667768


Q ss_pred             -----CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCC-
Q ss_conf             -----33210044677553322111024678999987664204420330002333579998531000367533112146-
Q gi|254780215|r   86 -----PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSS-  159 (262)
Q Consensus        86 -----~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG-  159 (262)
                           +|+.-.|.+|.+-..--   +  -+=|..-|+.|.+..-|.-...-                   +-|.-.|.- 
T Consensus       313 ~~sY~dRifTtg~vg~pG~~HI---~--~kDFs~vIe~Al~~~g~~e~e~~-------------------~~i~~GF~h~  368 (540)
T PRK05290        313 KGSYKDRIFTTGIVGWPGVKHI---D--GKDFSPVIEKALECPGFPEDEIG-------------------HEITVGFGHN  368 (540)
T ss_pred             CHHHHCCCEECCCCCCCCCCCC---C--CCCCHHHHHHHHHCCCCCCCCCC-------------------CEEEECCCHH
T ss_conf             1565012033266668997017---8--88878999999848998677899-------------------7687264488


Q ss_pred             -CHHHHHHHH---CCC---CEEECCCCCCHHH-HHHHHHHHHCCCCCCEEEEECC-CCCC-----------CCCC-CCCC
Q ss_conf             -402344321---035---2020233221133-3223333210566717983078-6678-----------7776-8875
Q gi|254780215|r  160 -SQKLADICL---ELG---GYISFTGMITFPK-YDALRAIARGIPMDRVLVETDS-PYIV-----------PVSC-QGKR  218 (262)
Q Consensus       160 -~~~~~~~~l---~~g---~y~S~~g~i~~~~-~~~~~e~v~~iPldriLlETDs-P~l~-----------p~~~-r~~~  218 (262)
                       =...+.+.+   +.|   -+|-++|.=--++ ..=..|+++++|.|.++|-.-. -|-+           |.-. -|+=
T Consensus       369 ~Vl~~AdkVieaVK~G~Ir~FflvgGCDG~~~~R~YYtefa~~lP~DtVILTlgCgKyRfn~ldlGdI~GIPRlLD~GQC  448 (540)
T PRK05290        369 AVLAVADKVIDAVKSGAIRHFFLMGGCDGAKPGRNYYTEFAEKLPKDTVILTLGCGKYRFNKLDLGDIGGIPRLLDAGQC  448 (540)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99976799999997498407999832689987750799999968986089950322223354556665787560206566


Q ss_pred             CCHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             8824499999999987289989999
Q gi|254780215|r  219 NEPAYVVNTAKALAKEKDVSYEDLM  243 (262)
Q Consensus       219 n~P~~i~~~~~~iA~i~~~~~eei~  243 (262)
                      |.......++.++|+..++++.++-
T Consensus       449 NDsYSai~IA~aLaeaf~~~VNdLP  473 (540)
T PRK05290        449 NDAYSAIVIALALAEAFGCGVNDLP  473 (540)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             3489999999999998589922040


No 128
>PRK09358 adenosine deaminase; Provisional
Probab=88.38  E-value=2.3  Score=23.14  Aligned_cols=143  Identities=20%  Similarity=0.214  Sum_probs=82.3

Q ss_pred             CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEEC--CCCH
Q ss_conf             33210044677553322111024678999987664204420330002--3335799985310003675331121--4640
Q gi|254780215|r   86 PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHCF--SSSQ  161 (262)
Q Consensus        86 ~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~F--sG~~  161 (262)
                      +.++|||=.|=   ....+.    .-|....+.|++.++++.+|+=.  ....+.+.+...   ++ .-|=|++  ..+.
T Consensus       160 ~~vvGidl~G~---E~~~~~----~~f~~~f~~ar~~gl~~t~HaGE~~~~~~i~~ai~~l---~a-~RIGHGv~~~~d~  228 (333)
T PRK09358        160 RGVVGFDLAGD---ELGFPP----SKFARAFDIARDAGLRLTAHAGEAGGPESIWEALDEL---GA-DRIGHGVRAIEDP  228 (333)
T ss_pred             CCEEEEECCCC---CCCCCH----HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC---CC-CEECCCEECCCCH
T ss_conf             87798435687---678986----8799999999985992333068889849999999842---87-6423503116799


Q ss_pred             HHHHHHHCCCCEEECCCCCCHH-----H--HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             2344321035202023322113-----3--32233332105667179830786678777688758824499999999987
Q gi|254780215|r  162 KLADICLELGGYISFTGMITFP-----K--YDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKE  234 (262)
Q Consensus       162 ~~~~~~l~~g~y~S~~g~i~~~-----~--~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i  234 (262)
                      +.++.+.+.+.-+-+.+.....     .  .--++...+.  -=.+.+-||-|-++-          .++..-+..+++.
T Consensus       229 ~l~~~l~~~~I~lEiCptSN~~~~~v~~~~~HPi~~~~~~--gv~v~inTDD~~vf~----------t~ls~Ey~~~~~~  296 (333)
T PRK09358        229 ALMDRLADRRIPLEVCPTSNVQLGVVPSLAEHPLKKLLDA--GVRVTINTDDPLVFG----------TTLSEEYELLAEA  296 (333)
T ss_pred             HHHHHHHHCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHC--CCEEEECCCCCCCCC----------CCHHHHHHHHHHH
T ss_conf             9999998669669976643032015787555769999988--994998089952028----------9789999999998


Q ss_pred             HCCCHHHHHHHHHHHHHH
Q ss_conf             289989999999999999
Q gi|254780215|r  235 KDVSYEDLMEETTKNALK  252 (262)
Q Consensus       235 ~~~~~eei~~~~~~N~~~  252 (262)
                      .+++.+++.+. ..|+.+
T Consensus       297 ~~ls~~el~~l-~~nai~  313 (333)
T PRK09358        297 FGLTDEELAQL-ARNALE  313 (333)
T ss_pred             HCCCHHHHHHH-HHHHHH
T ss_conf             59299999999-999999


No 129
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=88.07  E-value=2.4  Score=23.02  Aligned_cols=143  Identities=18%  Similarity=0.226  Sum_probs=84.3

Q ss_pred             CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH--HHHHHHHHHHHHHHHCCCCCCCCEECC--CCH
Q ss_conf             3321004467755332211102467899998766420442033000--233357999853100036753311214--640
Q gi|254780215|r   86 PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR--SADDDMAAILQEEMKKGPFPFVIHCFS--SSQ  161 (262)
Q Consensus        86 ~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r--~a~~~~l~iL~~~~~~~~~~~i~H~Fs--G~~  161 (262)
                      +.++|||=.|-.   ...+.    .-|....+.|++.++++.+|+=  +....+.+.+...  . + .=|=|++.  .+.
T Consensus       156 ~~vvGidl~G~E---~~~~~----~~f~~~f~~a~~~gl~~t~HaGE~~~~~~v~~ai~~l--~-~-~RIGHG~~~~~d~  224 (325)
T cd01320         156 KGVVGFDLAGDE---VGFPP----EKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLL--G-A-ERIGHGIRAIEDP  224 (325)
T ss_pred             CCEEEEECCCCC---CCCCH----HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCC--C-C-CEECCCCCCCCCH
T ss_conf             877884257866---78986----8999999999985984566458889828899998604--9-8-6432641134699


Q ss_pred             HHHHHHHCCCCEEECCCCCCHH-------HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             2344321035202023322113-------332233332105667179830786678777688758824499999999987
Q gi|254780215|r  162 KLADICLELGGYISFTGMITFP-------KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKE  234 (262)
Q Consensus       162 ~~~~~~l~~g~y~S~~g~i~~~-------~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i  234 (262)
                      +.++.+.+.+.-+-+.+.....       +.--++..++.  -=.+-+-||-|-++-          .++..-++.+++-
T Consensus       225 ~l~~~l~~~~I~lEiCptSN~~~~~v~~~~~HPi~~~~~~--gv~v~i~TDDp~~f~----------t~l~~Ey~~~~~~  292 (325)
T cd01320         225 ELVKRLAERNIPLEVCPTSNVQTGAVKSLAEHPLRELLDA--GVKVTINTDDPTVFG----------TYLTDEYELLAEA  292 (325)
T ss_pred             HHHHHHHHCCCEEEECCCCCHHCCCCCCCCCCHHHHHHHC--CCEEEEECCCCCCCC----------CCHHHHHHHHHHH
T ss_conf             9999998609727876653211057888778729999987--992999589940028----------9889999999998


Q ss_pred             HCCCHHHHHHHHHHHHHH
Q ss_conf             289989999999999999
Q gi|254780215|r  235 KDVSYEDLMEETTKNALK  252 (262)
Q Consensus       235 ~~~~~eei~~~~~~N~~~  252 (262)
                      .|++.+++. ++.+|+.+
T Consensus       293 ~gls~~~l~-~l~~nai~  309 (325)
T cd01320         293 FGLTEEELK-KLARNAVE  309 (325)
T ss_pred             HCCCHHHHH-HHHHHHHH
T ss_conf             592999999-99999999


No 130
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family; InterPro: IPR011288   This entry describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4 , .; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=87.23  E-value=0.89  Score=25.89  Aligned_cols=107  Identities=27%  Similarity=0.353  Sum_probs=57.9

Q ss_pred             CCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCC----
Q ss_conf             388875652268999999998699899991679877899999998557233211244544334----------467----
Q gi|254780215|r    7 CHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAH----------EEN----   72 (262)
Q Consensus         7 ~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~----------~~~----   72 (262)
                      .|||+   .++.+++ .+--.+||+-+++=|..+ .|++..++.|+   .|-.|   |=|.+.          .++    
T Consensus        77 lHLDH---he~~ddI-~~kv~aGvkS~MIDaSHl-~F~~Nv~lvk~---VVdFc---Hr~D~sVEAELG~LgG~EDDl~V  145 (282)
T TIGR01858        77 LHLDH---HESFDDI-KQKVAAGVKSVMIDASHL-PFEQNVKLVKE---VVDFC---HRYDASVEAELGRLGGVEDDLSV  145 (282)
T ss_pred             ECCCC---CCCHHHH-HHHHHCCCCEEEECCCCC-CHHHHHHHHHH---HHHHH---CCCCCEEEEEECCCCCCCCCCEE
T ss_conf             10334---6887688-999753772355657778-88887788666---66442---16786576660846553266425


Q ss_pred             ---------HHHHHHHHHHCC-CCCCCEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
Q ss_conf             ---------889988531001-3332100446-7755332211102467899998766420442033000
Q gi|254780215|r   73 ---------EVLVDELVCLAS-HPRVVAIGET-GLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR  131 (262)
Q Consensus        73 ---------~~~~~~l~~l~~-~~~~~aIGEi-GLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r  131 (262)
                               +....++.+.-. +.=.+|||=- ||  |.....++     |.|-.++=+.-+.|++||--
T Consensus       146 de~~AlyTdP~~A~~Fve~TGvDSLAvAIGTAHGl--Y~~aP~LD-----F~RL~~IR~~v~vPLVLHGA  208 (282)
T TIGR01858       146 DEEDALYTDPDEAKEFVEATGVDSLAVAIGTAHGL--YKEAPKLD-----FDRLAKIREKVDVPLVLHGA  208 (282)
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH--HHCCCCCC-----HHHHHHHHHCCCCCEEECCC
T ss_conf             40102358968999998742754788988665323--21267533-----78998752203777242177


No 131
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=87.17  E-value=2.7  Score=22.68  Aligned_cols=38  Identities=8%  Similarity=0.170  Sum_probs=20.0

Q ss_pred             HCCHHHHHHHHHHCCCCEEEEECCCH------HHHHHHHHHHHH
Q ss_conf             22689999999986998999916798------778999999985
Q gi|254780215|r   15 DEDRHDVIMRAHQANVLKMIAIAIKV------KDFVPLIKLCQD   52 (262)
Q Consensus        15 ~~d~~~~i~~a~~~gv~~~i~~~~~~------~~~~~~~~l~~~   52 (262)
                      ..|..+++......|++.+..+..+.      ..+.-..++++.
T Consensus        26 ~gdP~~~a~~~~~~gadelhivDld~a~~g~~~n~~~i~~i~~~   69 (243)
T cd04731          26 AGDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEE   69 (243)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             88999999999986999999970673203770079999999986


No 132
>KOG4342 consensus
Probab=87.04  E-value=0.59  Score=27.07  Aligned_cols=54  Identities=22%  Similarity=0.348  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCC
Q ss_conf             778999999985572332112-445443344678899885310013332100446
Q gi|254780215|r   41 KDFVPLIKLCQDYPSSIFCSV-GTHPCHAHEENEVLVDELVCLASHPRVVAIGET   94 (262)
Q Consensus        41 ~~~~~~~~l~~~~p~~i~~a~-GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEi   94 (262)
                      .+|....++..++|+.++.|- ..-=.+..+..+.....|.++++..++++||-.
T Consensus       308 RSW~tq~~lMdR~PEy~FvcSQAqQ~~WlkedhP~~f~kl~e~~~q~qF~pvGGt  362 (1078)
T KOG4342         308 RSWVTQLQLMDRNPEYIFVCSQAQQLEWLKEDHPGLFSKLQEFACQGQFVPVGGT  362 (1078)
T ss_pred             HHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEECCCE
T ss_conf             9999887587639652673516888887763285589999998752756611655


No 133
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=86.84  E-value=2.8  Score=22.56  Aligned_cols=135  Identities=10%  Similarity=0.024  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHCCCCCEEECHHHHHHHH-----------HHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCC
Q ss_conf             78999987664204420330002333579-----------9985310003675331121464023443210352020233
Q gi|254780215|r  110 VVFLRHIEASRITGIPLVIHSRSADDDMA-----------AILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTG  178 (262)
Q Consensus       110 ~vF~~ql~lA~e~~~pv~iH~r~a~~~~l-----------~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g  178 (262)
                      +.++...++|++ +.|+.+|+-....|+-           +.|.+..--++.-+..||--=+.+.++.+.+.|..++.+|
T Consensus       207 e~l~~~~~~a~~-~~~i~~Hl~E~~~e~~~~~~~~g~~pv~~l~~~GlL~~~~~~aH~v~ls~~ei~~la~~g~~VahcP  285 (418)
T cd01313         207 EQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRPVELLLDHGHLDARWCLVHATHLTDNETLLLGRSGAVVGLCP  285 (418)
T ss_pred             HHHHHHHHHHHH-CCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCCEEECC
T ss_conf             999999998764-5871563167657899999972898066698658876775564206589999999997489558771


Q ss_pred             CCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------HCCCHHHHHH
Q ss_conf             22113332---233332105667179830786678777688758824499999999987-----------2899899999
Q gi|254780215|r  179 MITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKE-----------KDVSYEDLME  244 (262)
Q Consensus       179 ~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i-----------~~~~~eei~~  244 (262)
                      .....-+.   .++++.+.  -=++=|=||+...        .+ ...-.+.+....++           ..++.+++.+
T Consensus       286 ~Sn~~lg~G~~p~~~~~~~--Gi~vgLGTD~~~~--------~d-~~~~~r~~~~~~rl~~~~~~~~~~~~~~~~~~vl~  354 (418)
T cd01313         286 TTEANLGDGIFPAAALLAA--GGRIGIGSDSNAR--------ID-LLEELRQLEYSQRLRDRARNVLATAGGSSARALLD  354 (418)
T ss_pred             HHHHHHCCCCCCHHHHHHC--CCCEEEECCCCCC--------CC-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf             6689728999984999977--9918997478988--------58-99999999999999864325678877888999999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999998425
Q gi|254780215|r  245 ETTKNALKLFSK  256 (262)
Q Consensus       245 ~~~~N~~~~f~~  256 (262)
                      -.+.|.-+.+|.
T Consensus       355 mAT~~GA~aLgl  366 (418)
T cd01313         355 AALAGGAQALGL  366 (418)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999999689


No 134
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=86.19  E-value=2.1  Score=23.37  Aligned_cols=31  Identities=16%  Similarity=0.113  Sum_probs=12.2

Q ss_pred             HHHHCCCCEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf             9998699899991679877899999998557
Q gi|254780215|r   24 RAHQANVLKMIAIAIKVKDFVPLIKLCQDYP   54 (262)
Q Consensus        24 ~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p   54 (262)
                      +..+.|+++++..+.-..+-....++++.|+
T Consensus        91 ~ll~~GadkViigs~a~~~p~~i~~~~~~fG  121 (253)
T PRK01033         91 RIFSLGVEKVSISTAALEDPKLITEAAEIYG  121 (253)
T ss_pred             HHHHCCCCEEEECCHHHHCCHHHHHHHHHCC
T ss_conf             9986798669999878637416578998779


No 135
>PRK07329 hypothetical protein; Provisional
Probab=85.37  E-value=3.3  Score=22.08  Aligned_cols=117  Identities=15%  Similarity=0.121  Sum_probs=55.4

Q ss_pred             EEEEECCCCCH-HHHCCHHHHHHHHHHCCCCEEEEEC-C--------------CHHH-HHHHHHHHHHCCCCCCCC--CC
Q ss_conf             16861388875-6522689999999986998999916-7--------------9877-899999998557233211--24
Q gi|254780215|r    2 LIDTHCHLLLP-DFDEDRHDVIMRAHQANVLKMIAIA-I--------------KVKD-FVPLIKLCQDYPSSIFCS--VG   62 (262)
Q Consensus         2 ~iD~H~HL~~~-~~~~d~~~~i~~a~~~gv~~~i~~~-~--------------~~~~-~~~~~~l~~~~p~~i~~a--~G   62 (262)
                      |.|.|+|-... .-....++.++++.+    .++.+- .              +... +....++.++|++.|...  +|
T Consensus         1 ~~D~H~HT~fS~ds~~~~e~~i~~a~~----~i~~TdH~d~~~~~~~~~~~~~d~~~Y~~~i~~l~~~y~~~I~~GiE~g   76 (246)
T PRK07329          1 IRDQHLHTHFSFDSDAKFEDYLTHFKG----EIVTTEHLDLSNPYDTGQDDVPDYAKYSAEIAELNEKYGNRIKKGIEIG   76 (246)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHC----CEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             951357899989877589999998514----8799755889987656313577899999999999997235106889947


Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCCCEECCC----CCCCC----CCCCCCHHHHHHHHHHHHHHHHCC-CCCEEE
Q ss_conf             45443344678899885310013332100446----77553----322111024678999987664204-420330
Q gi|254780215|r   63 THPCHAHEENEVLVDELVCLASHPRVVAIGET----GLDRY----HNAHTIEEQKVVFLRHIEASRITG-IPLVIH  129 (262)
Q Consensus        63 iHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEi----GLD~~----~~~~~~e~Q~~vF~~ql~lA~e~~-~pv~iH  129 (262)
                      ..|..     .+....+..--+=+-+  ||=+    |.|++    ...+..+.-.+.|+..++.++... --|+=|
T Consensus        77 ~~~~~-----~~~~~~~l~~~~fD~V--IGSvH~~~~~d~~~~~~~~~~~~e~~~~Yfe~~~~~v~~~~~fdvlgH  145 (246)
T PRK07329         77 YFAPR-----EDDILDFLANKDFDLK--LLSVHHNGVYDYLDEEVLDMDKKELLQEYFEKMEEAIGRFVDADVLAH  145 (246)
T ss_pred             CCCCC-----HHHHHHHHCCCCCCEE--EEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             78875-----9999998556999989--997505699888767763799999999999999999980899118317


No 136
>PRK04326 methionine synthase; Provisional
Probab=85.08  E-value=3.4  Score=21.99  Aligned_cols=93  Identities=18%  Similarity=0.210  Sum_probs=53.6

Q ss_pred             HHHHHHHHHH-HCCCCCEEE-CHHHHHHHHHHHHHHHHCCCCCCCCEECC-CCHHHHHHHHCCCC--EEECCCCCCHH--
Q ss_conf             8999987664-204420330-00233357999853100036753311214-64023443210352--02023322113--
Q gi|254780215|r  111 VFLRHIEASR-ITGIPLVIH-SRSADDDMAAILQEEMKKGPFPFVIHCFS-SSQKLADICLELGG--YISFTGMITFP--  183 (262)
Q Consensus       111 vF~~ql~lA~-e~~~pv~iH-~r~a~~~~l~iL~~~~~~~~~~~i~H~Fs-G~~~~~~~~l~~g~--y~S~~g~i~~~--  183 (262)
                      ...+-+..|. ..+..+.+| ||+..+.+++.|.+.    +..++..=|. ++.+.++.+-+.++  .+.+ |.|+-+  
T Consensus       194 ~~~ea~n~~~~~~~~~i~~HiC~Gny~~i~~~l~~~----~vd~~~lE~~~~~~~~l~~l~~~~~~k~v~~-Gvvd~k~~  268 (330)
T PRK04326        194 IAKEALNIIVKGIDVKLGLHVCYGDYSRLAPYILEF----PVDQFDLEFKNYNFKLLDLLKEYGFEKELGV-GVIDVHSP  268 (330)
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHC----CCCEEEHHHHCCCCHHHHHHHHCCCCCEEEE-EEEECCCC
T ss_conf             999999997278997799995477668899999709----9888867540798366688884699984887-36726899


Q ss_pred             -------HHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             -------3322333321056671798307866
Q gi|254780215|r  184 -------KYDALRAIARGIPMDRVLVETDSPY  208 (262)
Q Consensus       184 -------~~~~~~e~v~~iPldriLlETDsP~  208 (262)
                             =.++++++++.+|+|||.+-||+=+
T Consensus       269 ~lE~~e~i~~ri~~a~~~v~~erl~lspdCGf  300 (330)
T PRK04326        269 RVESVEEIKEAIKKLLEYFPPEKVYINPDCGL  300 (330)
T ss_pred             CCCCHHHHHHHHHHHHHHCCHHHEEECCCCCC
T ss_conf             98999999999999997389777998589999


No 137
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=84.70  E-value=3.6  Score=21.88  Aligned_cols=51  Identities=25%  Similarity=0.439  Sum_probs=33.4

Q ss_pred             HHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCCCC---------CC---CCCCCCCCCCC
Q ss_conf             999999998699899991679--87789999999855723---------32---11244544334
Q gi|254780215|r   19 HDVIMRAHQANVLKMIAIAIK--VKDFVPLIKLCQDYPSS---------IF---CSVGTHPCHAH   69 (262)
Q Consensus        19 ~~~i~~a~~~gv~~~i~~~~~--~~~~~~~~~l~~~~p~~---------i~---~a~GiHP~~~~   69 (262)
                      .+.+.+|.++|+..+++++..  ..|-.+..+.++++.-.         +-   +-+|+.|.+..
T Consensus        79 ~dAi~EAi~agI~~iV~ITEgiP~~D~~~i~~~a~~~g~riIGPNc~GiI~Pg~~kiGi~p~~~~  143 (289)
T PRK05678         79 ADAILEAIDAGIDLIVCITEGIPVLDMLEVKRYLKGKKTRLIGPNCPGIITPGECKIGIMPGHIH  143 (289)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCEEECCCCCCCCCCCCCCC
T ss_conf             99999998679988999438997888999999873079889889997016677240123562247


No 138
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=83.71  E-value=3  Score=22.33  Aligned_cols=20  Identities=10%  Similarity=0.215  Sum_probs=8.6

Q ss_pred             CHHHHHHHHHHCCCCEEEEE
Q ss_conf             68999999998699899991
Q gi|254780215|r   17 DRHDVIMRAHQANVLKMIAI   36 (262)
Q Consensus        17 d~~~~i~~a~~~gv~~~i~~   36 (262)
                      |..++++...+.|++.++.+
T Consensus        31 dP~~~a~~~~~~gadel~iv   50 (253)
T PRK02083         31 DPVELAKRYDEEGADELVFL   50 (253)
T ss_pred             CHHHHHHHHHHCCCCEEEEE
T ss_conf             99999999998799989999


No 139
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=83.11  E-value=4.1  Score=21.45  Aligned_cols=135  Identities=16%  Similarity=0.110  Sum_probs=62.5

Q ss_pred             HHHHHHHHHCCCCCEEECHHHHHH----HHHHHHHHHHCCCCCC-CCEECCC----------CHHHHHHHHCCCCEEECC
Q ss_conf             999876642044203300023335----7999853100036753-3112146----------402344321035202023
Q gi|254780215|r  113 LRHIEASRITGIPLVIHSRSADDD----MAAILQEEMKKGPFPF-VIHCFSS----------SQKLADICLELGGYISFT  177 (262)
Q Consensus       113 ~~ql~lA~e~~~pv~iH~r~a~~~----~l~iL~~~~~~~~~~~-i~H~FsG----------~~~~~~~~l~~g~y~S~~  177 (262)
                      ....++|.+++.|+..|.+.....    ..+++. .......+. +.|+-..          ....++.....|..+...
T Consensus       202 ~~~~~~a~~~~~~~~~h~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~  280 (415)
T cd01297         202 VALARVAARYGGVYQTHVRYEGDSILEALDELLR-LGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTAD  280 (415)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             9999999972985787306775206789999999-998629978999874367310234777999999999749846523


Q ss_pred             CCC-CHHHHHHHHHHHHCCCCCCEEEEECC-CCCCCCCCCCCCCCHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             322-11333223333210566717983078-667877768875882449999-999998728998999999999999984
Q gi|254780215|r  178 GMI-TFPKYDALRAIARGIPMDRVLVETDS-PYIVPVSCQGKRNEPAYVVNT-AKALAKEKDVSYEDLMEETTKNALKLF  254 (262)
Q Consensus       178 g~i-~~~~~~~~~e~v~~iPldriLlETDs-P~l~p~~~r~~~n~P~~i~~~-~~~iA~i~~~~~eei~~~~~~N~~~~f  254 (262)
                      ..- ........+.....   +-...-||+ |...+.+ + ..   ...... .+.+-+...++++++.+.++.|.-+.|
T Consensus       281 ~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~-~-~~---~~~~~~l~~~~~~~~~l~~~~ai~~~T~n~A~~l  352 (415)
T cd01297         281 VYPYGAGSEDDVRRIMAH---PVVMGGSDGGALGKPHP-R-SY---GDFTRVLGHYVRERKLLSLEEAVRKMTGLPARVF  352 (415)
T ss_pred             CCCCCCCCHHHHHHHHHC---CCCEEEECCCCCCCCCC-C-HH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             147655652789999718---98258705676777552-0-13---4557888776533058899999999969999982


Q ss_pred             HH
Q ss_conf             25
Q gi|254780215|r  255 SK  256 (262)
Q Consensus       255 ~~  256 (262)
                      |.
T Consensus       353 gl  354 (415)
T cd01297         353 GL  354 (415)
T ss_pred             CC
T ss_conf             99


No 140
>pfam00962 A_deaminase Adenosine/AMP deaminase.
Probab=83.09  E-value=4.1  Score=21.44  Aligned_cols=126  Identities=18%  Similarity=0.153  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEECC--CCHHHHHHHHCCCCEEECCCCCCHH--
Q ss_conf             78999987664204420330002--33357999853100036753311214--6402344321035202023322113--
Q gi|254780215|r  110 VVFLRHIEASRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHCFS--SSQKLADICLELGGYISFTGMITFP--  183 (262)
Q Consensus       110 ~vF~~ql~lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~Fs--G~~~~~~~~l~~g~y~S~~g~i~~~--  183 (262)
                      .-|....+.|++.++++.+|+=.  ..+.+.+.+...  + + .-|=|++.  .+.+.++.+.+.+.-+-+.+.....  
T Consensus       178 ~~f~~~f~~a~~~gl~~T~HaGE~~~~~~v~~ai~~l--~-a-~RIGHG~~~~~d~~l~~~~~~~~I~lEvCptSNv~~~  253 (329)
T pfam00962       178 PDFLYAFAEAGKYGLHLTPHAGEAGGPQSVVDALLDL--G-A-ERIGHGIRLAKDPVLLYLLAERQIPIEVCPLSNVALG  253 (329)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH--C-C-CCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHC
T ss_conf             9999999999980981267347889889999999851--7-4-4104640334699999998415953898866366525


Q ss_pred             -----HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             -----332233332105667179830786678777688758824499999999987289989999999999999
Q gi|254780215|r  184 -----KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALK  252 (262)
Q Consensus       184 -----~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~  252 (262)
                           ..--++...+.  -=.+-+-||-|-++-          ..+..=+..+++..|++.+++. ++.+|+.+
T Consensus       254 ~v~~~~~HP~~~l~~~--gv~vtinTDDp~~f~----------ttL~~Ey~~~~~~~gls~~~l~-~l~~nai~  314 (329)
T pfam00962       254 AVLSYAKHPLKEFLDA--GVPVSLSTDDPLQFG----------ATLSEEYTIAAQDFGLDTEDLC-ELARNSVK  314 (329)
T ss_pred             CCCCCCHHHHHHHHHC--CCEEEEECCCCCCCC----------CCHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
T ss_conf             6676325799999987--982999789961018----------8889999999998592999999-99999999


No 141
>cd01914 HCP Hybrid cluster protein (HCP), formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. HCP has three structural domains, an N-terminal alpha-helical domain, and two similar domains comprising a central beta-sheet flanked by alpha-helices. HCP contains two iron-sulfur clusters, one of which is a [Fe4-S4] cubane cluster similar to that of carbon monoxide dehydrogenase (CODH).  The second cluster, referred to as the hybrid cluster, is a hybrid [Fe4-S2-O2] center located at the interface of the three domains. Although the hybrid cluster is buried within the protein, it is accessible through a large hydrophobic cavity.
Probab=83.00  E-value=4.2  Score=21.42  Aligned_cols=187  Identities=18%  Similarity=0.203  Sum_probs=106.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHC-----------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--------------
Q ss_conf             89999167987789999999855-----------72332112445443344678899885310013--------------
Q gi|254780215|r   31 LKMIAIAIKVKDFVPLIKLCQDY-----------PSSIFCSVGTHPCHAHEENEVLVDELVCLASH--------------   85 (262)
Q Consensus        31 ~~~i~~~~~~~~~~~~~~l~~~~-----------p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~--------------   85 (262)
                      ..|++.|.|+.+.+..++-.+.-           |-+-||.+-=+|+.+-.+...|.++-+++..=              
T Consensus       118 ~~ILVSGHDL~dL~~LL~QTeg~GInVYTHgEMLPAH~YP~Lkky~hL~GnyG~AW~~Q~~eF~~FpGpIl~TTNCi~~P  197 (423)
T cd01914         118 KGILVSGHDLKDLEELLEQTEGTGVDVYTHGEMLPAHGYPELKKYPHLVGNYGGAWQNQQKEFARFPGPILMTTNCIIPP  197 (423)
T ss_pred             CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf             87999798989999999863799830772766541356810057875566884277758999731998889844777768


Q ss_pred             -----CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECC-
Q ss_conf             -----33210044677553322111024678999987664204-42033000233357999853100036753311214-
Q gi|254780215|r   86 -----PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITG-IPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFS-  158 (262)
Q Consensus        86 -----~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~-~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~Fs-  158 (262)
                           +|+.-.|.+|.+-..--.     -.=|..-|+.|.+.. .|--.-.                    +-+.-.|. 
T Consensus       198 ~~sY~dRifTt~~vg~pGv~hi~-----~~DFs~vI~~Al~~~g~~~~~~~--------------------~~i~~GF~h  252 (423)
T cd01914         198 RESYKDRIFTTGIVGWPGVKHIE-----GKDFSEVIEKAKELPGFPEEEES--------------------GTITTGFAH  252 (423)
T ss_pred             CHHHCCCCEECCCCCCCCCEECC-----CCCCHHHHHHHHHCCCCCCCCCC--------------------CEEEECCCH
T ss_conf             35651035044676589973478-----88988999999858899877889--------------------858726348


Q ss_pred             -CCHHHHHHH---HCCC---CEEECCCCCC-HHHHHHHHHHHHCCCCCCEEEEECC-CCCC-----------CCCC-CCC
Q ss_conf             -640234432---1035---2020233221-1333223333210566717983078-6678-----------7776-887
Q gi|254780215|r  159 -SSQKLADIC---LELG---GYISFTGMIT-FPKYDALRAIARGIPMDRVLVETDS-PYIV-----------PVSC-QGK  217 (262)
Q Consensus       159 -G~~~~~~~~---l~~g---~y~S~~g~i~-~~~~~~~~e~v~~iPldriLlETDs-P~l~-----------p~~~-r~~  217 (262)
                       --...+.+.   ++.|   -+|-++|.=- .+...=.+|+++++|.|.+.|-.-. -|-+           |.-. -|+
T Consensus       253 ~~vl~~Ad~iv~aVK~G~Ir~ffligGCDG~~~~R~Yyte~a~~~P~DtvILTl~CgKyRfn~ld~G~I~GiPRlLD~GQ  332 (423)
T cd01914         253 NQVLAVADKVVEAVKSGKIRHFFVVGGCDGRHKGRNYYTEFAEKLPKDTVILTLGCGKYRFNKLDLGDIGGIPRLLDAGQ  332 (423)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             88987668999999648974699981268989986348999987899729986432233135677667588344323666


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             5882449999999998728998999
Q gi|254780215|r  218 RNEPAYVVNTAKALAKEKDVSYEDL  242 (262)
Q Consensus       218 ~n~P~~i~~~~~~iA~i~~~~~eei  242 (262)
                      =|.......++.++|+..++++.++
T Consensus       333 CNDsysai~iA~aLaeaf~~~VNdL  357 (423)
T cd01914         333 CNDSYSAIVIALALAEAFGCDVNDL  357 (423)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             5448899999999999868995447


No 142
>PRK02621 consensus
Probab=82.92  E-value=2.5  Score=22.87  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=11.2

Q ss_pred             CCHHHHHHHHHHCCCCEEEEEC
Q ss_conf             2689999999986998999916
Q gi|254780215|r   16 EDRHDVIMRAHQANVLKMIAIA   37 (262)
Q Consensus        16 ~d~~~~i~~a~~~gv~~~i~~~   37 (262)
                      .|..+++....+.|.+.+..+.
T Consensus        30 gdP~~~ak~~~~~gad~lhivD   51 (254)
T PRK02621         30 GDPVELACRYSQAGADELVFLD   51 (254)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEE
T ss_conf             8999999999985999999982


No 143
>PRK06361 hypothetical protein; Provisional
Probab=82.74  E-value=4.3  Score=21.35  Aligned_cols=87  Identities=18%  Similarity=0.216  Sum_probs=51.5

Q ss_pred             CHHHHHHHHCCCCEEECCCCCCHH-HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             402344321035202023322113-3322333321056671798307866787776887588244999999999872899
Q gi|254780215|r  160 SQKLADICLELGGYISFTGMITFP-KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVS  238 (262)
Q Consensus       160 ~~~~~~~~l~~g~y~S~~g~i~~~-~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~  238 (262)
                      +.+.++.+.+.|..+-+|..-... .........+... =+|.+.|||=.  |..++       ++. -.-.+|+-=+++
T Consensus       129 ~~e~a~~Aae~gtaLEINa~p~rld~~~~~~r~A~~~G-v~i~I~sDAH~--~~~l~-------~~~-~gv~~Arra~L~  197 (216)
T PRK06361        129 TEEDAALAAENGVFLEITARKGHNLTNGHVARLAREAG-APLVINTDTHA--PSDLI-------TYE-TARKVALGAGLT  197 (216)
T ss_pred             CHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCC-CEEEEECCCCC--CCCCC-------CHH-HHHHHHHHCCCC
T ss_conf             58999999981958999689776477799999999869-96999789998--00036-------889-999999984999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999999999984256
Q gi|254780215|r  239 YEDLMEETTKNALKLFSKI  257 (262)
Q Consensus       239 ~eei~~~~~~N~~~~f~~~  257 (262)
                      .+++.+....+-..+.+|+
T Consensus       198 ~~dv~ntls~~~~~~~~~~  216 (216)
T PRK06361        198 EAELKEALSNNPKLLLKLL  216 (216)
T ss_pred             HHHHHHHHHHCHHHHHHHC
T ss_conf             9999999876999997309


No 144
>PRK02747 consensus
Probab=82.35  E-value=3.5  Score=21.89  Aligned_cols=21  Identities=10%  Similarity=0.018  Sum_probs=10.4

Q ss_pred             CCHHHHHHHHHHCCCCEEEEE
Q ss_conf             268999999998699899991
Q gi|254780215|r   16 EDRHDVIMRAHQANVLKMIAI   36 (262)
Q Consensus        16 ~d~~~~i~~a~~~gv~~~i~~   36 (262)
                      .|..+.++...+.|.+.+..+
T Consensus        30 gdP~~~ak~~~~~Gadelh~v   50 (257)
T PRK02747         30 GDPVEAARAYDAAGADELCFL   50 (257)
T ss_pred             CCHHHHHHHHHHCCCCEEEEE
T ss_conf             899999999998699989999


No 145
>KOG4245 consensus
Probab=81.55  E-value=4.7  Score=21.07  Aligned_cols=189  Identities=23%  Similarity=0.326  Sum_probs=91.2

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999855723321124454433446788998853100133321004467755332211102467899998766420442
Q gi|254780215|r   46 LIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIP  125 (262)
Q Consensus        46 ~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~p  125 (262)
                      .+.-+++||+.. ..+|--|-++.+.   ..++.++...+-.+.++ |||-  +....+++.|.  |--.-..|.++...
T Consensus        56 l~ae~~kfp~r~-v~lgtlpmn~~e~---avee~~rcvk~lg~~g~-eigs--hv~e~~ld~~d--~~ply~~~e~l~~~  126 (297)
T KOG4245          56 LAAECQKFPDRF-VGLGTLPMNAPEL---AVEEMERCVKELGFKGF-EIGS--HVAEKDLDAQD--FFPLYAAAEELKCS  126 (297)
T ss_pred             HHHHHHHCCHHC-CCCCCCCCCCHHH---HHHHHHHHHHHCCCCCE-EECC--CCCCCCCCHHH--HHHHHHHHHHHEEE
T ss_conf             899987433411-4557667757899---99999999997098835-4123--00312475577--76799998753246


Q ss_pred             CEEECHHHHH------------------H-HHHHHHHHH----HC-CCCC---------------CCCEECCCCHHHHHH
Q ss_conf             0330002333------------------5-799985310----00-3675---------------331121464023443
Q gi|254780215|r  126 LVIHSRSADD------------------D-MAAILQEEM----KK-GPFP---------------FVIHCFSSSQKLADI  166 (262)
Q Consensus       126 v~iH~r~a~~------------------~-~l~iL~~~~----~~-~~~~---------------~i~H~FsG~~~~~~~  166 (262)
                      +.+|--+.+-                  + ++.|-+-.+    .+ +..+               -|-|.|+-.++.--.
T Consensus       127 lfvhpwdmhmwdgrl~kywlpwlvgmpaeta~aics~img~i~~~fpklklcfahggga~p~~~grishg~n~rpdlca~  206 (297)
T KOG4245         127 LFVHPWDMHMWDGRLAKYWLPWLVGMPAETAIAICSMIMGGIFEKFPKLKLCFAHGGGAFPFIRGRISHGFNMRPDLCAG  206 (297)
T ss_pred             EEECCHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCCEEEEEECCCCCCCCCHHCC
T ss_conf             89641020030352676556777278669999999999704887574120541037866650322203676679531037


Q ss_pred             HHCC------CCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
Q ss_conf             2103------5202023322113332233332105667179830786678777688758824499999999987289989
Q gi|254780215|r  167 CLEL------GGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYE  240 (262)
Q Consensus       167 ~l~~------g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~e  240 (262)
                      -..+      |.+.. ...+-.+  ..+.-++..+..|+|++-||-|+..-      .-+|.-+      +-+.+..+.+
T Consensus       207 ~~~~~p~k~~g~~~t-dalvhdp--~alell~~tigkd~iilgtdypfplg------ele~gkl------iee~~~f~a~  271 (297)
T KOG4245         207 DCKMAPKKLDGLFWT-DALVHDP--KALELLIDTIGKDHIILGTDYPFPLG------ELEPGKL------IEEMEEFDAE  271 (297)
T ss_pred             CCCCCHHHHCCCHHH-HHHHCCC--HHHHHHHHHHCCCEEEECCCCCCCCC------CCCCCHH------HHHHCCCCHH
T ss_conf             688882440440101-3342481--88999997516540774168897576------6660157------7763334644


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999998425687
Q gi|254780215|r  241 DLMEETTKNALKLFSKISE  259 (262)
Q Consensus       241 ei~~~~~~N~~~~f~~~~~  259 (262)
                      .-.+..+.|+.+|.+ +.+
T Consensus       272 ~ke~l~~~nal~~l~-id~  289 (297)
T KOG4245         272 DKEDLKAGNALAFLD-IDE  289 (297)
T ss_pred             HHHHHHHCCCHHHCC-CCH
T ss_conf             477764034033306-304


No 146
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=81.51  E-value=4.7  Score=21.06  Aligned_cols=142  Identities=18%  Similarity=0.213  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEC------HH---HHHHHHH-HHHHHHHC-CCCCCCC-EECCCCHHHHHHHHCCCCEEEC
Q ss_conf             6789999876642044203300------02---3335799-98531000-3675331-1214640234432103520202
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHS------RS---ADDDMAA-ILQEEMKK-GPFPFVI-HCFSSSQKLADICLELGGYISF  176 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~------r~---a~~~~l~-iL~~~~~~-~~~~~i~-H~FsG~~~~~~~~l~~g~y~S~  176 (262)
                      .+-+..-|+-..+.|.|+.||-      .+   .+..+++ +|.....+ +..|+|+ |+=+.+.-..-+-.+.+.+-++
T Consensus       117 ~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~~Fi~~vl~pl~~~fP~LKIV~EHiTT~dav~~v~~~~~nlaATI  196 (344)
T COG0418         117 IEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPLRQRFPKLKIVLEHITTKDAVEYVKDANNNLAATI  196 (344)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCEEEEE
T ss_conf             78878999999971986897046577545611357878999999998658763699887150889999996486504673


Q ss_pred             CC-------------CC---CH-----HH---HHHHHHHHHCCCCCCEEEEECCCCCCCCCCC---------CCCCCHHH
Q ss_conf             33-------------22---11-----33---3223333210566717983078667877768---------87588244
Q gi|254780215|r  177 TG-------------MI---TF-----PK---YDALRAIARGIPMDRVLVETDSPYIVPVSCQ---------GKRNEPAY  223 (262)
Q Consensus       177 ~g-------------~i---~~-----~~---~~~~~e~v~~iPldriLlETDsP~l~p~~~r---------~~~n~P~~  223 (262)
                      ++             .|   .|     ++   .+.+++++. -.-.|+.+-|||   +|.+-.         |--|.|..
T Consensus       197 T~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~-sg~~kfFlGtDS---APH~~~~Ke~~cgcAG~fsap~a  272 (344)
T COG0418         197 TPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAAT-SGHPKFFLGTDS---APHARSRKESACGCAGIFSAPFA  272 (344)
T ss_pred             EHHHEEEEHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHH-CCCCCEEECCCC---CCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             14560242656632787861355120065456999999984-689727715898---88865441005666310153768


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999872899899999999999998425
Q gi|254780215|r  224 VVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       224 i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      ++..++.--+  .-..+.+..=+..|..+|||-
T Consensus       273 l~~~AevFE~--~naL~~LeaF~S~nGp~fYgl  303 (344)
T COG0418         273 LPLYAEVFEE--ENALDNLEAFASDNGPKFYGL  303 (344)
T ss_pred             HHHHHHHHHH--HCHHHHHHHHHHHCCCCEECC
T ss_conf             9999999987--267989998886548412156


No 147
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=81.27  E-value=4.8  Score=21.00  Aligned_cols=115  Identities=18%  Similarity=0.220  Sum_probs=60.9

Q ss_pred             EECCCCCHHHH-CCHHHHHHHHHHCCCCEEEEECCCH----------HHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCC
Q ss_conf             61388875652-2689999999986998999916798----------7789999999855723-3211244544334467
Q gi|254780215|r    5 THCHLLLPDFD-EDRHDVIMRAHQANVLKMIAIAIKV----------KDFVPLIKLCQDYPSS-IFCSVGTHPCHAHEEN   72 (262)
Q Consensus         5 ~H~HL~~~~~~-~d~~~~i~~a~~~gv~~~i~~~~~~----------~~~~~~~~l~~~~p~~-i~~a~GiHP~~~~~~~   72 (262)
                      +=+||...... ..+.+.+.++.+.||..+++..-|+          .+.....++.+++.+. ....++.+|..-.+ .
T Consensus        80 ~i~Hltc~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~-s  158 (291)
T COG0685          80 PIPHLTCRDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPE-S  158 (291)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC-C
T ss_conf             134751468898999999999998188559994589877788786546899999999985689735899867887844-1


Q ss_pred             HHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCCEE
Q ss_conf             88998853100133321004467755332211102467899998766420--442033
Q gi|254780215|r   73 EVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRIT--GIPLVI  128 (262)
Q Consensus        73 ~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~--~~pv~i  128 (262)
                      .+....+..+..  ++    +-|=|++-++.-.+.  +.|++..+.....  +.|++.
T Consensus       159 ~~~~~d~~~lkr--Kv----~aGAd~~iTQ~~fd~--e~~~~~~~~~~~~g~~~pI~~  208 (291)
T COG0685         159 KDVKEDIKRLKR--KV----DAGADFFITQFFFDV--EAFERFAERVRAAGIDIPIIP  208 (291)
T ss_pred             HHHHHHHHHHHH--HH----HCCCCEEEEEECCCH--HHHHHHHHHHHHCCCCCCEEE
T ss_conf             005789999999--98----658865764201689--999999999986389985562


No 148
>PRK01659 consensus
Probab=81.06  E-value=2.7  Score=22.69  Aligned_cols=22  Identities=9%  Similarity=0.178  Sum_probs=13.7

Q ss_pred             CCHHHHHHHHHHCCCCEEEEEC
Q ss_conf             2689999999986998999916
Q gi|254780215|r   16 EDRHDVIMRAHQANVLKMIAIA   37 (262)
Q Consensus        16 ~d~~~~i~~a~~~gv~~~i~~~   37 (262)
                      .|..+++....+.|++.+..+.
T Consensus        30 gDP~~~ak~~~~~Gad~ihivD   51 (252)
T PRK01659         30 GDPVEIAAAYNEAGADELVFLD   51 (252)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEE
T ss_conf             8999999999987999999994


No 149
>PRK00830 consensus
Probab=80.62  E-value=3.2  Score=22.15  Aligned_cols=22  Identities=9%  Similarity=0.135  Sum_probs=10.7

Q ss_pred             HCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             2268999999998699899991
Q gi|254780215|r   15 DEDRHDVIMRAHQANVLKMIAI   36 (262)
Q Consensus        15 ~~d~~~~i~~a~~~gv~~~i~~   36 (262)
                      ..|.-+.+.+..+.|++.+..+
T Consensus        33 ~gdP~~~ak~~~~~gadelhiv   54 (273)
T PRK00830         33 AGDPVELAKRYYEDGADELVFL   54 (273)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEE
T ss_conf             8899999999998799989999


No 150
>KOG2584 consensus
Probab=79.72  E-value=5.4  Score=20.67  Aligned_cols=166  Identities=19%  Similarity=0.187  Sum_probs=76.3

Q ss_pred             CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE-EEC--HHHHHHHHHHHHH-HHHCCCCCCCCEECC-CCHH
Q ss_conf             2100446775533221110246789999876642044203-300--0233357999853-100036753311214-6402
Q gi|254780215|r   88 VVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLV-IHS--RSADDDMAAILQE-EMKKGPFPFVIHCFS-SSQK  162 (262)
Q Consensus        88 ~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~-iH~--r~a~~~~l~iL~~-~~~~~~~~~i~H~Fs-G~~~  162 (262)
                      ..+.|+.|=.-+.-.-+-+...++--+-+.+|.+.|.|+- +|.  ..|.+ .+...++ -......++.-+++. |+.-
T Consensus       211 ~l~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~ncPlyvvhVmsksaa~-~Ia~aRk~g~~v~gepita~l~~dg~hy  289 (522)
T KOG2584         211 LLELGITGPEGHELSRPEELEAEATNRAITIARQANCPLYVVHVMSKSAAD-AIALARKKGRVVFGEPITASLGTDGSHY  289 (522)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHH-HHHHHHHCCCEEECCCCHHHHCCCCHHH
T ss_conf             887178686644335844666789999999988628982058885263788-9999874384661341046544663432


Q ss_pred             HHHHHHCCCCEEECCCCCCHH-HHHHHHHHHHCCCCCCEEEEEC-CCCCCCCCCCCCC---CCHHHHHHHHHHHHH----
Q ss_conf             344321035202023322113-3322333321056671798307-8667877768875---882449999999998----
Q gi|254780215|r  163 LADICLELGGYISFTGMITFP-KYDALRAIARGIPMDRVLVETD-SPYIVPVSCQGKR---NEPAYVVNTAKALAK----  233 (262)
Q Consensus       163 ~~~~~l~~g~y~S~~g~i~~~-~~~~~~e~v~~iPldriLlETD-sP~l~p~~~r~~~---n~P~~i~~~~~~iA~----  233 (262)
                      +-+.|...-+|+.-+|.-..+ ..+-+..+++.=  +-=++-|| +||-+.+..=|+-   --|.-+--+-+.++-    
T Consensus       290 ~~~~w~~Aa~~v~sPPlr~d~~t~~~L~~lLa~g--~L~~tgSdhctf~~~qKalgKddFt~ip~GvnGvedrMsviwek  367 (522)
T KOG2584         290 WSKDWDHAAAFVTSPPLRPDPTTPDGLMDLLAEG--DLQLTGSDHCTFTTEQKALGKDDFTKIPNGVNGVEDRMSVIWEK  367 (522)
T ss_pred             CCCCHHHCCEEEECCCCCCCCCCHHHHHHHHHCC--CCCEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEH
T ss_conf             3578102013545799888998878999998548--42003027877777887426676130877645420163233320


Q ss_pred             ---HHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             ---72899899999999999998425
Q gi|254780215|r  234 ---EKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       234 ---i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                         --.++...+...+..|+-+.||-
T Consensus       368 gv~~G~md~~~fVavtstnaAkifnl  393 (522)
T KOG2584         368 GVHSGKMDENRFVAVTSTNAAKIFNL  393 (522)
T ss_pred             HCCCCCCCCCCEEEEECCCCHHHEEC
T ss_conf             00237567341799952663433340


No 151
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=79.56  E-value=4.6  Score=21.11  Aligned_cols=59  Identities=12%  Similarity=0.089  Sum_probs=32.6

Q ss_pred             HHHHHHHHHCCCCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             99985310003675331121464-023443210352-020233221133322333321056
Q gi|254780215|r  138 AAILQEEMKKGPFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIP  196 (262)
Q Consensus       138 l~iL~~~~~~~~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP  196 (262)
                      ++.|++....-+.+.|+|.=||. .++++++++.|. .+-|+..+..-=.+.+|+.+..=|
T Consensus       188 ~~~l~~I~~~~~iPLVLHGgSGi~~e~i~~ai~~Gi~KiNi~Tel~~a~~~~~r~~l~~np  248 (283)
T PRK07998        188 IPLLKRIAEVSPVPLVIHGGSGIPPDILRSFVNYRVAKVNIASDLRKAFITTVGKAYVNNH  248 (283)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCC
T ss_conf             9999998864798789869999999999999986986999586899999999999998687


No 152
>PRK02145 consensus
Probab=78.45  E-value=4.6  Score=21.13  Aligned_cols=22  Identities=9%  Similarity=0.136  Sum_probs=12.5

Q ss_pred             CCHHHHHHHHHHCCCCEEEEEC
Q ss_conf             2689999999986998999916
Q gi|254780215|r   16 EDRHDVIMRAHQANVLKMIAIA   37 (262)
Q Consensus        16 ~d~~~~i~~a~~~gv~~~i~~~   37 (262)
                      .|..+++....+.|++.+..+-
T Consensus        31 gdP~~~a~~~~~~GadelhivD   52 (257)
T PRK02145         31 GDPVEIARRYDEQGADELTFLD   52 (257)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEE
T ss_conf             8999999999987999899997


No 153
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway.  The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=78.41  E-value=5.9  Score=20.41  Aligned_cols=146  Identities=16%  Similarity=0.015  Sum_probs=69.4

Q ss_pred             CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCHHH-------HHHHHHHCCC-
Q ss_conf             268999999998699899991679877899999998557233211244544--334467889-------9885310013-
Q gi|254780215|r   16 EDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPC--HAHEENEVL-------VDELVCLASH-   85 (262)
Q Consensus        16 ~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~--~~~~~~~~~-------~~~l~~l~~~-   85 (262)
                      +|..++++-|..-||.  |++-.|...-..+  ..+.||+....+..-.+.  ...-..+..       ++++..+... 
T Consensus        82 ~di~eiv~YA~~rgI~--VIPEID~PGH~~a--~~~~~pel~~~~~~~~~~~~~ld~~~~~t~~fl~~v~~Ev~~lF~~~  157 (326)
T cd06564          82 EEFKELIAYAKDRGVN--IIPEIDSPGHSLA--FTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPK  157 (326)
T ss_pred             HHHHHHHHHHHHCCCE--EEECCCCCHHHHH--HHHHCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999984998--9863678337899--99859563478877888877568998769999999999999866787


Q ss_pred             CCCCEECCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHH
Q ss_conf             3321004467755332-211102467899998766420442033000233357999853100036753311214640234
Q gi|254780215|r   86 PRVVAIGETGLDRYHN-AHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLA  164 (262)
Q Consensus        86 ~~~~aIGEiGLD~~~~-~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~  164 (262)
                      .+.+=   ||=|=+.. ....+.+..++.+-.+..++.|+.++     +++|.+.--.. ....+..++++.++++...+
T Consensus       158 ~~yiH---iGGDE~~~~~~~~~~~~~f~~~~~~~v~~~gk~~~-----~W~d~~~~~~~-~~~~~~~~iv~~W~~~~~~~  228 (326)
T cd06564         158 SDTVH---IGADEYAGDAGYAEAFRAYVNDLAKYVKDKGKTPR-----VWGDGIYYKGD-TTVLSKDVIINYWSYGWADP  228 (326)
T ss_pred             CCEEE---ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE-----EECCCCCCCCC-CCCCCCCCEEEECCCCCHHH
T ss_conf             88898---63113888898799999999999999998698589-----97521046887-77799985899817972369


Q ss_pred             HHHHCCCCEE
Q ss_conf             4321035202
Q gi|254780215|r  165 DICLELGGYI  174 (262)
Q Consensus       165 ~~~l~~g~y~  174 (262)
                      +++++.|+-+
T Consensus       229 ~~~~~~G~~v  238 (326)
T cd06564         229 KELLNKGYKI  238 (326)
T ss_pred             HHHHHCCCCE
T ss_conf             9999879969


No 154
>pfam08965 DUF1870 Domain of unknown function (DUF1870). This domain is found in a set of hypothetical bacterial proteins.
Probab=78.36  E-value=2.5  Score=22.92  Aligned_cols=47  Identities=13%  Similarity=0.270  Sum_probs=37.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH----HHHHHHHHHHHHH
Q ss_conf             6887588244999999999872899899999999----9999984256875
Q gi|254780215|r  214 CQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETT----KNALKLFSKISEC  260 (262)
Q Consensus       214 ~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~----~N~~~~f~~~~~~  260 (262)
                      -+|..+-|..|......+...++.-...+.+.+.    .|++|+|+-++..
T Consensus        36 E~G~~~IP~~i~~~~~~m~~~Rk~~i~aii~kinnrIGnnTmR~f~dl~aF   86 (117)
T pfam08965        36 EKGDIAIPDEVEAKLRKLNQIRNKVLNAILSEINNRIGNNTYRYYPDLEAF   86 (117)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHH
T ss_conf             758988999999999999999999999999999877541312423579999


No 155
>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]
Probab=78.34  E-value=4.6  Score=21.12  Aligned_cols=53  Identities=19%  Similarity=0.288  Sum_probs=28.4

Q ss_pred             EEEEECCCCCHHHH-----CCHHHHH--------HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf             16861388875652-----2689999--------999986998999916798778999999985572
Q gi|254780215|r    2 LIDTHCHLLLPDFD-----EDRHDVI--------MRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPS   55 (262)
Q Consensus         2 ~iD~H~HL~~~~~~-----~d~~~~i--------~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~   55 (262)
                      +||-||||+-..+.     +|.-++.        .-++.+||.--.+.| +-.+.++-...++.+|.
T Consensus        27 IidpH~Hl~P~~i~en~~F~d~t~l~l~~DHY~wRmmrs~GV~e~~itg-d~sdrEkw~afa~~~~~   92 (463)
T COG1904          27 IIDPHCHLEPQEIAENEAFPDPTSLWLKGDHYKWRMMRSNGVAERLITG-DTSDREKWRAFAKTVPL   92 (463)
T ss_pred             EECCCCCCCHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHCCC-CCCHHHHHHHHHHHHHH
T ss_conf             3477679998999636789998997306508999999875970642589-98769999999974216


No 156
>TIGR01885 Orn_aminotrans ornithine--oxo-acid transaminase; InterPro: IPR010164   Ornithine aminotransferase catalyses the conversion of L-ornithine and a 2-oxo acid to L-glutamate 5-semialdehyde and an L-amino acid. This enzyme is found in low-GC bacteria, where it is responsible for the fourth step in arginine biosynthesis, and in the mitochondrial matrix of eukaryotes, where it controls L-ornithine levels in tissues. In human hereditary ornithine aminotransferase deficiency, the elevated levels of intraocular concentrations of ornithine are responsible for gyrate atrophy, which affects the CNS and peripheral nervous system ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding.
Probab=78.04  E-value=4.7  Score=21.09  Aligned_cols=194  Identities=14%  Similarity=0.128  Sum_probs=107.5

Q ss_pred             CCCHHHHCCHHHHHHHH--HHCC--CCEEEEECCCHHHHHHHHHHHHHCCCC----------CCCCCC-CC---------
Q ss_conf             88756522689999999--9869--989999167987789999999855723----------321124-45---------
Q gi|254780215|r    9 LLLPDFDEDRHDVIMRA--HQAN--VLKMIAIAIKVKDFVPLIKLCQDYPSS----------IFCSVG-TH---------   64 (262)
Q Consensus         9 L~~~~~~~d~~~~i~~a--~~~g--v~~~i~~~~~~~~~~~~~~l~~~~p~~----------i~~a~G-iH---------   64 (262)
                      |+++.|.+|.-....+.  .--|  .++++.+.|-.+..+.+.+||++|.=.          |..|.| +|         
T Consensus        76 L~Sraf~nd~lg~~~~~~t~LfgGk~~~vL~mNTGaEAvEtA~KLAR~WgY~~K~ip~~kA~ii~~~GNFhGRTlgA~S~  155 (426)
T TIGR01885        76 LTSRAFHNDVLGEFAKYLTKLFGGKYEKVLPMNTGAEAVETALKLARKWGYEVKGIPRNKAKIIAASGNFHGRTLGAVSA  155 (426)
T ss_pred             CHHHHHHCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf             10276606035789999997549951056045687347999999999744135785576238998538873303544320


Q ss_pred             ---------------C-----CCCCCCCHHHHHHHHHHCCCC-----CCCEE------CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             ---------------4-----433446788998853100133-----32100------4467755332211102467899
Q gi|254780215|r   65 ---------------P-----CHAHEENEVLVDELVCLASHP-----RVVAI------GETGLDRYHNAHTIEEQKVVFL  113 (262)
Q Consensus        65 ---------------P-----~~~~~~~~~~~~~l~~l~~~~-----~~~aI------GEiGLD~~~~~~~~e~Q~~vF~  113 (262)
                                     |     +....-.-..++.|+.-+++|     .+.||      ||-|.   -  -|.+   ..|.
T Consensus       156 Std~e~~k~~FGPflPnvasGhgf~~iPYgd~EAl~~aL~~P~~~GDnVAA~i~EPIQGEAGv---v--vPp~---gYl~  227 (426)
T TIGR01885       156 STDSETSKKGFGPFLPNVASGHGFRKIPYGDLEALRKALQDPKKTGDNVAAFILEPIQGEAGV---V--VPPP---GYLP  227 (426)
T ss_pred             CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCE---E--ECCC---CHHH
T ss_conf             267212006787967743357852115588878999997275778886899995040354436---8--4896---3578


Q ss_pred             HHHHHHHHCCCCCEEECHHH-HHHHHHHHHHHHHCCCCCCCCEECC--CCHHH--HHHHHCCCCEEECCCCCCHHHHHHH
Q ss_conf             99876642044203300023-3357999853100036753311214--64023--4432103520202332211333223
Q gi|254780215|r  114 RHIEASRITGIPLVIHSRSA-DDDMAAILQEEMKKGPFPFVIHCFS--SSQKL--ADICLELGGYISFTGMITFPKYDAL  188 (262)
Q Consensus       114 ~ql~lA~e~~~pv~iH~r~a-~~~~l~iL~~~~~~~~~~~i~H~Fs--G~~~~--~~~~l~~g~y~S~~g~i~~~~~~~~  188 (262)
                      .-=+|++++|--.++=-.+. -+.|=++|           -.||++  =.+++  +-++|.=|. +=||.+++       
T Consensus       228 ~V~~LC~~~nVLfI~DEiQTGlGRTGk~l-----------a~dh~~aev~PDi~lLGKALsGGv-~PiSa~la-------  288 (426)
T TIGR01885       228 GVRALCKEHNVLFIADEIQTGLGRTGKLL-----------ACDHENAEVKPDIVLLGKALSGGV-YPISAVLA-------  288 (426)
T ss_pred             HHHHHHHHCCCEEEEEEECCCCCHHHHHH-----------HHHCCCCEECCCCEEEEHHHCCCC-CCEEEEEE-------
T ss_conf             99998655187289820003840254533-----------101058820450335112345894-62243666-------


Q ss_pred             HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf             333210566717983078667877768875882449999999998728998
Q gi|254780215|r  189 RAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSY  239 (262)
Q Consensus       189 ~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~  239 (262)
                             ..|=+++=+|+||.=-..|-|   .|.--.-.+..|-=+.+..+
T Consensus       289 -------~~dim~vl~PGPF~HGSTfGG---NPLAcavaiAaLeVL~~ekL  329 (426)
T TIGR01885       289 -------DDDIMSVLKPGPFEHGSTFGG---NPLACAVAIAALEVLEEEKL  329 (426)
T ss_pred             -------CCCEEECCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHHCCCH
T ss_conf             -------464012117648656776887---57899999999998740450


No 157
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=77.99  E-value=6.1  Score=20.33  Aligned_cols=125  Identities=17%  Similarity=0.053  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHCCCCCEEECH---HHHHH-HHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHH
Q ss_conf             899998766420442033000---23335-79998531000367533112146402344321035202023322113332
Q gi|254780215|r  111 VFLRHIEASRITGIPLVIHSR---SADDD-MAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYD  186 (262)
Q Consensus       111 vF~~ql~lA~e~~~pv~iH~r---~a~~~-~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~  186 (262)
                      .++...++|++++.|+.+|.-   +..+. -++-+..   .+ ...+.||--=+.+.++.+.+.|..++..|.....-+.
T Consensus       126 ~~~~~~~~a~~~~~~i~~H~~E~~~~~~~~~~~~~~~---l~-~~ll~H~v~l~d~ei~lla~~g~~vahcP~SN~~lg~  201 (263)
T cd01305         126 DLEDILELLRRRGKLFAIHASETRESVGMTDIERALD---LE-PDLLVHGTHLTDEDLELVRENGVPVVLCPRSNLYFGV  201 (263)
T ss_pred             HHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHH---CC-CCEEEECCCCCHHHHHHHHHCCCCEEECHHHHHHHCC
T ss_conf             5999999999779968988689712036559999984---69-9889973789999999999749968988487876447


Q ss_pred             ---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Q ss_conf             ---2333321056671798307866787776887588244999999999872----8998999999999999
Q gi|254780215|r  187 ---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEK----DVSYEDLMEETTKNAL  251 (262)
Q Consensus       187 ---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~----~~~~eei~~~~~~N~~  251 (262)
                         .++++++.  --++-|=||+.-         -|. .++....+..+.+.    .++.+++.+--+.|.-
T Consensus       202 G~~pi~~~~~~--Gi~v~LGTD~~a---------sn~-~dm~~emr~a~~~~~~~~~~~a~~vl~mAT~~GA  261 (263)
T cd01305         202 GIPPVAELLKL--GIKVLLGTDNVM---------VNE-PDMWAEMEFLAKYSRLQGYLSPLEILRMATVNAA  261 (263)
T ss_pred             CCCCHHHHHHC--CCCEEEECCCCC---------CCC-CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf             88888999978--994899648886---------688-1699999999998576789999999999811302


No 158
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=77.90  E-value=6.1  Score=20.31  Aligned_cols=154  Identities=14%  Similarity=0.029  Sum_probs=84.7

Q ss_pred             CHHHHHHHHHHC--CCCEEEEEC-----CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCC
Q ss_conf             689999999986--998999916-----798778999999985572332112445443344678899885310-013332
Q gi|254780215|r   17 DRHDVIMRAHQA--NVLKMIAIA-----IKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCL-ASHPRV   88 (262)
Q Consensus        17 d~~~~i~~a~~~--gv~~~i~~~-----~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l-~~~~~~   88 (262)
                      .+..+++.....  ..+.++.+|     -+++++.+..++.++.+-.+++.-|=|-     ..+...+.+... .....-
T Consensus        41 ~l~~vl~~i~~~~~~~D~viiTGDLs~dgs~esY~~l~~~L~~l~~P~~~lPGNHD-----~~~~m~~~l~~~~~~~~~~  115 (275)
T PRK11148         41 SYQAVLEAIRAEQHEFDLIVATGDLAQDHSAEAYQHFAEGIAPLRKPCVWLPGNHD-----FQPAMYSALQDAGISPAKH  115 (275)
T ss_pred             HHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC-----CHHHHHHHHCCCCCCCCCE
T ss_conf             99999999984599988999764025899999999999999726999899588762-----3899998603266786532


Q ss_pred             CEECC----CCCCCCCC----CCCCHHHHHHHHHHHHHHHHCCCCCEEEC----HH----------HHHHHHHHHHHHHH
Q ss_conf             10044----67755332----21110246789999876642044203300----02----------33357999853100
Q gi|254780215|r   89 VAIGE----TGLDRYHN----AHTIEEQKVVFLRHIEASRITGIPLVIHS----RS----------ADDDMAAILQEEMK  146 (262)
Q Consensus        89 ~aIGE----iGLD~~~~----~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~----r~----------a~~~~l~iL~~~~~  146 (262)
                      +-+|+    |+||-...    ..--+.|.+.++++|+-+.+...-|.+|-    .+          -.++++++|+.+. 
T Consensus       116 v~~~~~w~iI~LDS~~~g~~~G~L~~~qL~wL~~~L~~~~~~~~lV~lHHpPv~ig~~wmD~~~L~N~~~l~~il~~~~-  194 (275)
T PRK11148        116 VLIGEHWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERHTLVLLHHHPLPAGSAWLDQHSLRNAHELAQVLAKFP-  194 (275)
T ss_pred             EEECCCEEEEEEECCCCCCCCCEECHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHCCCHHHHHHHHHHCC-
T ss_conf             7964987999997999997770839999999999997478998799992798457983200111879999999997489-


Q ss_pred             CCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCC
Q ss_conf             03675331121464023443210352020233221
Q gi|254780215|r  147 KGPFPFVIHCFSSSQKLADICLELGGYISFTGMIT  181 (262)
Q Consensus       147 ~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~  181 (262)
                        .   |-|-|.|=.-+.-...-.|.-+.-+|..|
T Consensus       195 --~---Vk~v~~GHvHq~~~~~~~gi~~~~tPSTc  224 (275)
T PRK11148        195 --N---VKAILCGHIHQELDLDWNGRRLLATPSTC  224 (275)
T ss_pred             --C---EEEEEECCCCCHHHHEECCEEEEECCCCC
T ss_conf             --9---04999626575677069999999748721


No 159
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=76.63  E-value=6.1  Score=20.32  Aligned_cols=38  Identities=13%  Similarity=0.121  Sum_probs=18.5

Q ss_pred             HCCHHHHHHHHHHCCCCEEEEECCCH------HHHHHHHHHHHH
Q ss_conf             22689999999986998999916798------778999999985
Q gi|254780215|r   15 DEDRHDVIMRAHQANVLKMIAIAIKV------KDFVPLIKLCQD   52 (262)
Q Consensus        15 ~~d~~~~i~~a~~~gv~~~i~~~~~~------~~~~~~~~l~~~   52 (262)
                      ..|..+++....+.|++.+..+..+.      ..+.-+.++++.
T Consensus        29 ~gdP~~~ak~~~~~g~d~lhivDld~a~~~~~~n~~~I~~i~~~   72 (232)
T TIGR03572        29 IGDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEE   72 (232)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             88999999999986999999996876434882179999999997


No 160
>pfam02614 UxaC Glucuronate isomerase. This is a family of Glucuronate isomerases also known as D-glucuronate isomerase, uronic isomerase, uronate isomerase, or uronic acid isomerase, EC:5.3.1.12. This enzyme catalyses the reactions: D-glucuronate <= D-fructuronate and D-galacturonate <= D-tagaturonate. It is not however clear where the experimental evidence for this functional assignment came from and thus this family has no literature reference.
Probab=75.88  E-value=3.7  Score=21.77  Aligned_cols=16  Identities=25%  Similarity=0.264  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999842
Q gi|254780215|r  240 EDLMEETTKNALKLFS  255 (262)
Q Consensus       240 eei~~~~~~N~~~~f~  255 (262)
                      +-+..+++.|++++|+
T Consensus       446 ~~v~di~y~na~~~F~  461 (465)
T pfam02614       446 ELVKDICYNNAKRYFG  461 (465)
T ss_pred             HHHHHHHHHCHHHHHC
T ss_conf             9999988758999838


No 161
>PRK09819 alpha-mannosidase; Provisional
Probab=75.00  E-value=2.7  Score=22.72  Aligned_cols=48  Identities=6%  Similarity=0.026  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHHCCCCCC
Q ss_conf             7789999999855723321124454433446---78899885310013332
Q gi|254780215|r   41 KDFVPLIKLCQDYPSSIFCSVGTHPCHAHEE---NEVLVDELVCLASHPRV   88 (262)
Q Consensus        41 ~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~---~~~~~~~l~~l~~~~~~   88 (262)
                      ..|..+++|.++||+..|.++.=.+....++   .++..++++++..+.+.
T Consensus        31 rt~~~vl~lme~~pey~f~~~~~Q~~~ledy~~~~Pe~~erIk~~V~eGr~   81 (874)
T PRK09819         31 NNMEEILCRLEQDNEYKYYVLDGQTALLEDYLAVKPEDKDRVKKLVEAGRL   81 (874)
T ss_pred             HHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCE
T ss_conf             999999999976889752005542999999988693069999999985986


No 162
>pfam03063 Prismane Prismane/CO dehydrogenase family. This family includes both hybrid-cluster proteins and the beta chain of carbon monoxide dehydrogenase. The hybrid-cluster proteins contain two Fe/S centres - a [4Fe-4S] cubane cluster, and a hybrid [4Fe-2S-2O] cluster. The physiological role of this protein is as yet unknown, although a role in nitrate/nitrite respiration has been suggested. The prismane protein from Escherichia coli was shown to contain hydroxylamine reductase activity (NH2OH + 2e + 2 H+ - NH3 + H2O). This activity is rather low. Hydroxylamine reductase activity was also found in CO-dehydrogenase in which the active site Ni was replaced by Fe. The CO dehydrogenase contains a Ni-3Fe-2S-3O centre.
Probab=74.66  E-value=7.4  Score=19.75  Aligned_cols=90  Identities=21%  Similarity=0.191  Sum_probs=57.3

Q ss_pred             CCEECCCCHHHHHHHHCCC---CEEECCCCCCHHHHH-HHHHHHHCC-CCCCEEEEEC--------CCCCCC--------
Q ss_conf             3112146402344321035---202023322113332-233332105-6671798307--------866787--------
Q gi|254780215|r  153 VIHCFSSSQKLADICLELG---GYISFTGMITFPKYD-ALRAIARGI-PMDRVLVETD--------SPYIVP--------  211 (262)
Q Consensus       153 i~H~FsG~~~~~~~~l~~g---~y~S~~g~i~~~~~~-~~~e~v~~i-PldriLlETD--------sP~l~p--------  211 (262)
                      ++.-+.|+.+.+-..+..|   -.|.+.|.-.++... ...++++.+ |.|-|++-|=        .-++.|        
T Consensus       295 il~~~gg~~~~lid~I~~G~Irgv~~v~GC~n~~~~~~~~~~~akeli~~d~lVlt~GC~~~~~~~~gl~~~~a~~~aG~  374 (477)
T pfam03063       295 VLAALGGSLDPLIDAIKSGKIRGFVLVVGCDNAKPGRDYYTELAKELIPRDILVLTTGCAKYRFNKLGLGDIEAAELAGD  374 (477)
T ss_pred             HHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCHHHHHCCCC
T ss_conf             99985467078999997499872799964899987644899999986669879990616766665459998555633689


Q ss_pred             ----CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             ----7768875882449999999998728998999
Q gi|254780215|r  212 ----VSCQGKRNEPAYVVNTAKALAKEKDVSYEDL  242 (262)
Q Consensus       212 ----~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei  242 (262)
                          .-.=|+=|.-+.+..++..+|+..++++.++
T Consensus       375 Glp~vL~~GsC~D~~r~~~ia~alA~~lg~di~dL  409 (477)
T pfam03063       375 GLPPVLDMGQCNDNYRAIVIALALAEALGVDINDL  409 (477)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99871404245607999999999999858991106


No 163
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=74.58  E-value=6.6  Score=20.08  Aligned_cols=48  Identities=13%  Similarity=0.151  Sum_probs=30.6

Q ss_pred             CCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             675331121464-023443210352-020233221133322333321056
Q gi|254780215|r  149 PFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIP  196 (262)
Q Consensus       149 ~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP  196 (262)
                      +.+.|+|.=||. .+++++.+++|. .+-+...+-+-=...+|+.+..=|
T Consensus       242 ~vpLVlHGgSGvp~e~i~~ai~~GV~KiNIdTdlq~Aft~~vr~~~~~np  291 (340)
T cd00453         242 SLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANE  291 (340)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             87457417889999999999982965323560889999999999998591


No 164
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=74.49  E-value=7.5  Score=19.72  Aligned_cols=132  Identities=14%  Similarity=0.165  Sum_probs=62.9

Q ss_pred             HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC-CC--------------CCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             9999986998999916798778999999985572-33--------------21124454433446788998853100133
Q gi|254780215|r   22 IMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPS-SI--------------FCSVGTHPCHAHEENEVLVDELVCLASHP   86 (262)
Q Consensus        22 i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~-~i--------------~~a~GiHP~~~~~~~~~~~~~l~~l~~~~   86 (262)
                      +=+....||.+++-+++++.+..-+..+|....- ++              +.++-+||+... ......+.+.. ..=.
T Consensus        58 vC~ll~~GV~AIFGPss~~~s~~~v~siC~al~IPhi~~~~~~~~~~~~~~~~sinl~P~~~~-ls~A~~dlv~~-~~W~  135 (333)
T cd06394          58 MCQILPKGVVSVLGPSSSPASSSIVSHICGEKEIPHFKVGPEETPKLQYLRFASVNLHPSNED-ISVAVAGILNS-FNYP  135 (333)
T ss_pred             HHHHHHHCCEEEECCCCCHHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCCCCEEEECCCHHH-HHHHHHHHHHH-CCCC
T ss_conf             998786385799899996657999999844679980861521056654445654883599899-99999999997-6996


Q ss_pred             CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHH
Q ss_conf             32100446775533221110246789999876642044203300023335799985310003675331121464023443
Q gi|254780215|r   87 RVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADI  166 (262)
Q Consensus        87 ~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~  166 (262)
                      ++.-|       |.+    +.-..-+..-|+.....+-++.+-..+...+.-.+|++.......++|++|   +.+.+..
T Consensus       136 ~ftii-------Ye~----~~~L~rLq~ll~~~~~~~~~i~vr~l~~~~d~r~vLkeIk~~~~~~iIiDc---~~e~~~~  201 (333)
T cd06394         136 TASLI-------CAK----AECLLRLEELLRQFLISKETLSVRMLDDSRDPTPLLKEIRDDKTATIIIDA---NASMSHT  201 (333)
T ss_pred             EEEEE-------EEC----CHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEC---CHHHHHH
T ss_conf             69999-------707----356899999987216789807999878899867999999857774799988---7888999


Q ss_pred             HHC
Q ss_conf             210
Q gi|254780215|r  167 CLE  169 (262)
Q Consensus       167 ~l~  169 (262)
                      +++
T Consensus       202 iLk  204 (333)
T cd06394         202 ILL  204 (333)
T ss_pred             HHH
T ss_conf             999


No 165
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=74.46  E-value=6.4  Score=20.19  Aligned_cols=25  Identities=12%  Similarity=0.143  Sum_probs=14.3

Q ss_pred             HCCHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             2268999999998699899991679
Q gi|254780215|r   15 DEDRHDVIMRAHQANVLKMIAIAIK   39 (262)
Q Consensus        15 ~~d~~~~i~~a~~~gv~~~i~~~~~   39 (262)
                      ..|..+.++...+.|++.+..+-.+
T Consensus        30 ~gdP~~~a~~~~~~Gad~lhlvDld   54 (252)
T PRK13597         30 AGDPVEAARAYDEAGADELVFLDIS   54 (252)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf             8899999999998699999999564


No 166
>PRK08185 hypothetical protein; Provisional
Probab=74.40  E-value=7.5  Score=19.71  Aligned_cols=57  Identities=21%  Similarity=0.298  Sum_probs=33.4

Q ss_pred             HHHHHHHHHCCCCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHC
Q ss_conf             99985310003675331121464-023443210352-0202332211333223333210
Q gi|254780215|r  138 AAILQEEMKKGPFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARG  194 (262)
Q Consensus       138 l~iL~~~~~~~~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~  194 (262)
                      +++|++....-..+.++|.=||. .+++++.+++|. .+-|+..+...=.+.+++.+..
T Consensus       187 ~~~l~~I~~~~~vPLVLHGgSG~~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~~~~l~~  245 (283)
T PRK08185        187 MDILKEINERVDIPLVLHGGSANPDAEIAESVTLGVGKINISSDMKYAFFQKVREILVA  245 (283)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf             89999999864999897589999999999999869379984867999999999999985


No 167
>PRK03220 consensus
Probab=74.23  E-value=5.4  Score=20.66  Aligned_cols=38  Identities=3%  Similarity=0.015  Sum_probs=21.0

Q ss_pred             HCCHHHHHHHHHHCCCCEEEEECCC------HHHHHHHHHHHHH
Q ss_conf             2268999999998699899991679------8778999999985
Q gi|254780215|r   15 DEDRHDVIMRAHQANVLKMIAIAIK------VKDFVPLIKLCQD   52 (262)
Q Consensus        15 ~~d~~~~i~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~   52 (262)
                      ..|..+++....+.|++.+..+-.+      ...++-..+++++
T Consensus        30 ~gdP~~~a~~~~~~G~d~lhivDld~a~~g~~~n~~~I~~i~~~   73 (257)
T PRK03220         30 AGDPVELAAVYDAEGADELTFLDVTASSSGRATMLDVVRRTAEQ   73 (257)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf             88999999999986999899990888756763079999999850


No 168
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=73.71  E-value=5.3  Score=20.71  Aligned_cols=35  Identities=26%  Similarity=0.226  Sum_probs=25.4

Q ss_pred             CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEE
Q ss_conf             91686138887565226899999999869989999
Q gi|254780215|r    1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIA   35 (262)
Q Consensus         1 M~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~   35 (262)
                      |.+|-|||-....-.-...+++++|...|+..+-.
T Consensus         2 ~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~vlAi   36 (258)
T COG0613           2 MKADLHVHTTASDGGLTPREVVERAKAKGVDVLAI   36 (258)
T ss_pred             CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             73543371267898679899999999779977997


No 169
>PRK04281 consensus
Probab=73.34  E-value=8  Score=19.54  Aligned_cols=22  Identities=9%  Similarity=0.069  Sum_probs=10.1

Q ss_pred             CCHHHHHHHHHHCCCCEEEEEC
Q ss_conf             2689999999986998999916
Q gi|254780215|r   16 EDRHDVIMRAHQANVLKMIAIA   37 (262)
Q Consensus        16 ~d~~~~i~~a~~~gv~~~i~~~   37 (262)
                      .|..+++....+.|++.+..+-
T Consensus        30 gdP~~~ak~~~~~GadelhivD   51 (254)
T PRK04281         30 GDPVEAAKRYNGEGADELTFLD   51 (254)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEE
T ss_conf             8999999999986999999996


No 170
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=73.01  E-value=8.1  Score=19.49  Aligned_cols=59  Identities=20%  Similarity=0.166  Sum_probs=34.7

Q ss_pred             HHHHHHHHHCCCCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             99985310003675331121464-023443210352-020233221133322333321056
Q gi|254780215|r  138 AAILQEEMKKGPFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIP  196 (262)
Q Consensus       138 l~iL~~~~~~~~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP  196 (262)
                      +++|++....-+.+.++|+=||. .+++++++.+|. .+-|+..+...=.+.+++.++.-|
T Consensus       189 ~d~L~~I~~~~~iPLVLHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~r~~~~~~~  249 (281)
T PRK06806        189 LDRLQEINDNVHIPLVLHGGSGISPEDFKQCIQHGIRKINVATATFNNVITAVNNLVLNTP  249 (281)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999972899989649999999999999986983898675789999999999986089


No 171
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=72.67  E-value=8.3  Score=19.44  Aligned_cols=142  Identities=11%  Similarity=0.097  Sum_probs=63.0

Q ss_pred             HHHHHHHHHCCCCEEEEECCC-HHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCC--HHHHHHHH-------------H
Q ss_conf             999999998699899991679-87789999999855723-3211244544334467--88998853-------------1
Q gi|254780215|r   19 HDVIMRAHQANVLKMIAIAIK-VKDFVPLIKLCQDYPSS-IFCSVGTHPCHAHEEN--EVLVDELV-------------C   81 (262)
Q Consensus        19 ~~~i~~a~~~gv~~~i~~~~~-~~~~~~~~~l~~~~p~~-i~~a~GiHP~~~~~~~--~~~~~~l~-------------~   81 (262)
                      ...+.++.+.|...++.+-++ .++-+.+.+.++ ||.. ....-+.++.  ..+.  .+..+...             -
T Consensus        74 ~~~i~~~LD~Ga~GiivP~V~t~eea~~~v~a~k-ypP~G~Rg~~~~~r~--~~yg~~~~y~~~~n~~~~vi~qIEt~~a  150 (249)
T TIGR03239        74 PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATR-YPPEGIRGVSVSHRS--NRYGTVPDYFATINDNITVLVQIESQKG  150 (249)
T ss_pred             HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHCCEEEEEECCHHH
T ss_conf             7899999708998789517455999999999734-499999888766321--1247706999998644278999658899


Q ss_pred             HCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC---HHHHHHHHHHHHHHHHCCCCCCCCEECC
Q ss_conf             0013332100446775533221110246789999876642044203300---0233357999853100036753311214
Q gi|254780215|r   82 LASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS---RSADDDMAAILQEEMKKGPFPFVIHCFS  158 (262)
Q Consensus        82 l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~---r~a~~~~l~iL~~~~~~~~~~~i~H~Fs  158 (262)
                      +.+-+++.+|  =|+|...-            =--+|+..++.|=....   .++.+++++..++   .+.   ..-.|.
T Consensus       151 v~nldeI~av--~GvD~ifi------------GP~DLs~slG~~g~~~~p~v~~ai~~v~~~~~~---~gk---~~Gi~~  210 (249)
T TIGR03239       151 VDNVDEIAAV--DGVDGIFV------------GPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAA---HGK---PCGILA  210 (249)
T ss_pred             HHHHHHHHCC--CCCCEEEE------------CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH---CCC---CEEEEC
T ss_conf             9879999678--99888998------------848999876999999997999999999999998---599---669827


Q ss_pred             CCHHHHHHHHCCCC-EEECCCCCCHH
Q ss_conf             64023443210352-02023322113
Q gi|254780215|r  159 SSQKLADICLELGG-YISFTGMITFP  183 (262)
Q Consensus       159 G~~~~~~~~l~~g~-y~S~~g~i~~~  183 (262)
                      ++.+.+++++++|+ +|+++..+.+-
T Consensus       211 ~~~~~~~~~~~~G~~~i~~g~D~~~l  236 (249)
T TIGR03239       211 PVEADARRYLEWGATFVAVGSDLGVF  236 (249)
T ss_pred             CCHHHHHHHHHCCCCEEEEHHHHHHH
T ss_conf             99999999998699899966899999


No 172
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze  the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=72.60  E-value=8.3  Score=19.43  Aligned_cols=144  Identities=19%  Similarity=0.160  Sum_probs=82.6

Q ss_pred             CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEECC--CC
Q ss_conf             33210044677553322111024678999987664204-420330002--33357999853100036753311214--64
Q gi|254780215|r   86 PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITG-IPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHCFS--SS  160 (262)
Q Consensus        86 ~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~-~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~Fs--G~  160 (262)
                      ..++|||=.|-+.. ...+    ..-|......|++.+ +++.+|+=.  ..+.+.+.+. ..   + .-|=|++.  .+
T Consensus       134 ~~vvGidl~G~e~~-~~~~----~~~f~~~~~~a~~~g~l~~t~HaGE~~~~~~i~~al~-l~---a-~RIGHG~~~~~d  203 (305)
T cd00443         134 NYVVGIDLVGDESK-GENP----LRDFYSYYEYARRLGLLGLTLHCGETGNREELLQALL-LL---P-DRIGHGIFLLKH  203 (305)
T ss_pred             CCEEEEEEECCCCC-CCCC----HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH-HH---H-HHCCCHHHHCCH
T ss_conf             94899996256667-8898----6999999999996499835641587797789999998-45---5-522531211318


Q ss_pred             HHHHHHHHCCCCEEECCCCCCHH-------HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             02344321035202023322113-------33223333210566717983078667877768875882449999999998
Q gi|254780215|r  161 QKLADICLELGGYISFTGMITFP-------KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAK  233 (262)
Q Consensus       161 ~~~~~~~l~~g~y~S~~g~i~~~-------~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~  233 (262)
                      ++.++.+.+.+.-+-+-|.....       ..--++..++.  -=.+-+-||-|-++-          ..+..=+..+++
T Consensus       204 ~~L~~~l~~~~I~lEvCPtSN~~~~~~~~~~~HP~~~l~~~--Gv~vtinTDDp~~f~----------t~Ls~Ey~~~~~  271 (305)
T cd00443         204 PELIYLVKLRNIPIEVCPTSNVVLGTVQSYEKHPFMRFFKA--GLPVSLSTDDPGIFG----------TSLSEEYSLAAK  271 (305)
T ss_pred             HHHHHHHHHCCCEEEECCCCCHHCCCCCCCCCCHHHHHHHC--CCCEEEECCCCCHHC----------CCHHHHHHHHHH
T ss_conf             99999998459559988752012156788677879999988--990999589940108----------988999999999


Q ss_pred             HHCCCHHHHHHHHHHHHHH
Q ss_conf             7289989999999999999
Q gi|254780215|r  234 EKDVSYEDLMEETTKNALK  252 (262)
Q Consensus       234 i~~~~~eei~~~~~~N~~~  252 (262)
                      ..+++.+++.+.. +|+.+
T Consensus       272 ~~~l~~~~l~~l~-~nai~  289 (305)
T cd00443         272 TFGLTFEDLCELN-RNSVL  289 (305)
T ss_pred             HHCCCHHHHHHHH-HHHHH
T ss_conf             8096999999999-99999


No 173
>PRK05211 consensus
Probab=72.11  E-value=8.5  Score=19.35  Aligned_cols=35  Identities=9%  Similarity=0.009  Sum_probs=19.1

Q ss_pred             HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf             99999869989999167987789999999855723
Q gi|254780215|r   22 IMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSS   56 (262)
Q Consensus        22 i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~   56 (262)
                      +++..+.|+++++..+.-..+-....++++.|+..
T Consensus        80 i~~ll~~GadkViigs~a~~np~li~~~~~~fG~q  114 (248)
T PRK05211         80 AREILSFGADKISINSPALADPTLITRLADRFGVQ  114 (248)
T ss_pred             HHHHHHCCCCEEEECCHHHHCCHHHHHHHHHCCCC
T ss_conf             99999879988998976761961899999857993


No 174
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=71.43  E-value=8.8  Score=19.25  Aligned_cols=111  Identities=14%  Similarity=0.199  Sum_probs=62.5

Q ss_pred             HHHHCC-HHHHHHHHHHCCCCEE--EEECCCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             565226-8999999998699899--99167987789999999855723321--124454433446788998853100133
Q gi|254780215|r   12 PDFDED-RHDVIMRAHQANVLKM--IAIAIKVKDFVPLIKLCQDYPSSIFC--SVGTHPCHAHEENEVLVDELVCLASHP   86 (262)
Q Consensus        12 ~~~~~d-~~~~i~~a~~~gv~~~--i~~~~~~~~~~~~~~l~~~~p~~i~~--a~GiHP~~~~~~~~~~~~~l~~l~~~~   86 (262)
                      +.+.+| .+..++++.+.|++-+  .-.=.|+...+.+.+.++++...+-.  |+-+-|-+.-+.+.+..+++.++-.  
T Consensus        93 rhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~--  170 (472)
T COG5016          93 RHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGV--  170 (472)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEECHHCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCC--
T ss_conf             678458999999999864875797211104646799999999961863689987426886528999999999997279--


Q ss_pred             CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH
Q ss_conf             3210044677553322111024678999987664204420330002
Q gi|254780215|r   87 RVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS  132 (262)
Q Consensus        87 ~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~  132 (262)
                      .-++|        .+.+-.-.-....+--=.+-++++.||.+||-.
T Consensus       171 DSIci--------KDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~  208 (472)
T COG5016         171 DSICI--------KDMAGLLTPYEAYELVKAIKKELPVPVELHTHA  208 (472)
T ss_pred             CEEEE--------ECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             87884--------000026986889999999997459706985045


No 175
>PRK02925 glucuronate isomerase; Reviewed
Probab=71.36  E-value=4.9  Score=20.94  Aligned_cols=15  Identities=20%  Similarity=0.217  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999842
Q gi|254780215|r  241 DLMEETTKNALKLFS  255 (262)
Q Consensus       241 ei~~~~~~N~~~~f~  255 (262)
                      -+.++++.|++++|+
T Consensus       451 ~v~di~y~na~~yF~  465 (466)
T PRK02925        451 MVKDICYNNAKRYFK  465 (466)
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             999999874998828


No 176
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=71.28  E-value=8.9  Score=19.23  Aligned_cols=82  Identities=11%  Similarity=0.146  Sum_probs=42.2

Q ss_pred             CCCCCEEE-CHHHH----------HHHHHHHHHHHHCCCCCCCCEECC----CCHHHHHHHHCCCCEEECC------CCC
Q ss_conf             04420330-00233----------357999853100036753311214----6402344321035202023------322
Q gi|254780215|r  122 TGIPLVIH-SRSAD----------DDMAAILQEEMKKGPFPFVIHCFS----SSQKLADICLELGGYISFT------GMI  180 (262)
Q Consensus       122 ~~~pv~iH-~r~a~----------~~~l~iL~~~~~~~~~~~i~H~Fs----G~~~~~~~~l~~g~y~S~~------g~i  180 (262)
                      .+..+.+| ||+-+          ..+++.|-+.    +..++..=|.    |+.+.++.+-. +-.+++|      +.+
T Consensus       207 ~~~~v~~HvC~Gn~~~~~~~~~~y~~i~~~l~~~----~vd~~~lE~~~~r~~~~~~l~~~~~-~k~v~lGvid~~~~~v  281 (332)
T cd03311         207 DDTQIHTHICYGNFRSTWAAEGGYEPIAEYIFEL----DVDVFFLEYDNSRAGGLEPLKELPY-DKKVGLGVVDVKSPEV  281 (332)
T ss_pred             CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC----CCCEEEEEECCCCCCCHHHHHHCCC-CCEEEEEEEECCCCCC
T ss_conf             8868999876788777654556278999999718----9988999836887410189984899-9879866882799998


Q ss_pred             CHH--HHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             113--3322333321056671798307866
Q gi|254780215|r  181 TFP--KYDALRAIARGIPMDRVLVETDSPY  208 (262)
Q Consensus       181 ~~~--~~~~~~e~v~~iPldriLlETDsP~  208 (262)
                      -..  =.+.++++++.+|+|||.+-||+=+
T Consensus       282 E~~eev~~rI~~a~~~v~~e~l~~~pdCGf  311 (332)
T cd03311         282 ESPEEVKDRIEEAAKYVPLEQLWVSPDCGF  311 (332)
T ss_pred             CCHHHHHHHHHHHHHHCCHHHEEECCCCCC
T ss_conf             999999999999997389988898688898


No 177
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=71.04  E-value=9  Score=19.20  Aligned_cols=59  Identities=19%  Similarity=0.182  Sum_probs=34.5

Q ss_pred             HHHHHHHHHCCCCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             99985310003675331121464-023443210352-020233221133322333321056
Q gi|254780215|r  138 AAILQEEMKKGPFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIP  196 (262)
Q Consensus       138 l~iL~~~~~~~~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP  196 (262)
                      +++|++....-..+.|+|.=||. .++.++.+++|. .+-|.....+--...+|+.+..-|
T Consensus       193 f~~L~~i~~~~~~PlVlHGgSGip~eeI~~aI~~GV~KvNi~Td~~~A~~~avr~~~~~~~  253 (286)
T COG0191         193 FDRLKEIQEAVSLPLVLHGGSGIPDEEIREAIKLGVAKVNIDTDLQLAFTAAVREYLAENP  253 (286)
T ss_pred             HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf             7999999998589879767999999999999972955885472779999999999998483


No 178
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=71.03  E-value=9  Score=19.20  Aligned_cols=59  Identities=22%  Similarity=0.212  Sum_probs=33.0

Q ss_pred             HHHHHHHHHCCCCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             99985310003675331121464-023443210352-020233221133322333321056
Q gi|254780215|r  138 AAILQEEMKKGPFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIP  196 (262)
Q Consensus       138 l~iL~~~~~~~~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP  196 (262)
                      +++|++....-+.+.++|.=||. .++++++++.|. .|-|+..+...=.+.+|+.+..-|
T Consensus       185 ~~~L~~I~~~~~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~r~~~~~~~  245 (276)
T cd00947         185 FDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRLAFTAALREYLAENP  245 (276)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCC
T ss_conf             8999999997399879757999999999999984975998673899999999999998688


No 179
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=70.80  E-value=9.1  Score=19.16  Aligned_cols=60  Identities=20%  Similarity=0.188  Sum_probs=35.6

Q ss_pred             HHHHHHHHHCCCCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             99985310003675331121464-023443210352-0202332211333223333210566
Q gi|254780215|r  138 AAILQEEMKKGPFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIPM  197 (262)
Q Consensus       138 l~iL~~~~~~~~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iPl  197 (262)
                      ++.|++....-..+.++|.=||. .+++++++++|. .+-|+..+..-=...+|+.+..-|-
T Consensus       191 ~~~L~~I~~~~~iPLVLHGgSG~~~e~i~~ai~~Gi~KvNi~T~l~~a~~~~~r~~l~~~p~  252 (286)
T PRK12738        191 FQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQ  252 (286)
T ss_pred             HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999997307999897699999999999999769069984858999999999999986978


No 180
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=70.67  E-value=9.1  Score=19.14  Aligned_cols=58  Identities=17%  Similarity=0.141  Sum_probs=38.1

Q ss_pred             EEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             861388875--65226899999999869989999167-9877899999998557233211244
Q gi|254780215|r    4 DTHCHLLLP--DFDEDRHDVIMRAHQANVLKMIAIAI-KVKDFVPLIKLCQDYPSSIFCSVGT   63 (262)
Q Consensus         4 D~H~HL~~~--~~~~d~~~~i~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~p~~i~~a~Gi   63 (262)
                      |-|+|-...  +-....++++++|.+.|+..+..+-. +...+.+..+.+++++  +.+-+|+
T Consensus         1 dLh~HT~~S~~dg~~~~~~lv~~a~~~g~~~vaiTDh~~~~g~~~~~~~~~~~g--i~~I~G~   61 (67)
T smart00481        1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAG--IKPIIGL   61 (67)
T ss_pred             CCCCCCCCCHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCC--CEEEEEE
T ss_conf             948876585656368999999999987998899967886446999999999869--9799999


No 181
>PRK02134 hypothetical protein; Provisional
Probab=70.64  E-value=9.2  Score=19.14  Aligned_cols=56  Identities=20%  Similarity=0.288  Sum_probs=42.3

Q ss_pred             CCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             87565226899999999869989999167987789999999855723321124454433
Q gi|254780215|r   10 LLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHA   68 (262)
Q Consensus        10 ~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~   68 (262)
                      |+--+......-|.++.+.|+..-..+-++-..+..+.++++++|+   .++|+|=...
T Consensus        10 DDfG~s~~vn~gI~~a~~~GivtstslM~n~p~~~~A~~l~~~~p~---l~vGlHl~Lt   65 (253)
T PRK02134         10 DDFGLSKGQNYGIIEAHRNGVVTSTTAMVNMPAIDHAVQLSREYPS---LGVGMHFVLT   65 (253)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCC---CCEEEEEEEC
T ss_conf             7678987788999999987983786642589049999999976899---9767877606


No 182
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=70.55  E-value=9.2  Score=19.13  Aligned_cols=53  Identities=15%  Similarity=0.137  Sum_probs=29.1

Q ss_pred             HCCHHHHHHHHHHCCCCEEEEECCCHH---HHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             226899999999869989999167987---7899999998557233211244544334
Q gi|254780215|r   15 DEDRHDVIMRAHQANVLKMIAIAIKVK---DFVPLIKLCQDYPSSIFCSVGTHPCHAH   69 (262)
Q Consensus        15 ~~d~~~~i~~a~~~gv~~~i~~~~~~~---~~~~~~~l~~~~p~~i~~a~GiHP~~~~   69 (262)
                      .-+.++++..+++..+  +++.++++.   +..-+..+.+.+|+......|.||....
T Consensus        56 ~~~~~~~~~~~~~~d~--v~i~t~Tps~~~~~~~a~~~K~~~P~~~ivlgG~H~T~~p  111 (472)
T TIGR03471        56 GVTIDDTLAIAKDYDL--VVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLP  111 (472)
T ss_pred             CCCHHHHHHHHCCCCE--EEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf             8998999998506998--9999258656889999999997688988999787643689


No 183
>TIGR01975 isoAsp_dipep beta-aspartyl peptidase; InterPro: IPR010229   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of proteins include metallopeptidases belonging to the MEROPS peptidase family M38 (clan MJ, beta-aspartyl dipeptidase family). This entry includes the beta-aspartyl dipeptidase from Escherichia coli, (3.4.19.5 from EC, IadA), which degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This entry also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that may have an equivalent in function. This family shows homology to dihydroorotases. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerisation, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase..
Probab=70.11  E-value=9.4  Score=19.07  Aligned_cols=242  Identities=18%  Similarity=0.291  Sum_probs=134.3

Q ss_pred             EEEEECCCCC----HHH-HCCHHHHHHHHHHCCCCEEEE-ECCC-----HHH-HHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             1686138887----565-226899999999869989999-1679-----877-899999998557233211244544334
Q gi|254780215|r    2 LIDTHCHLLL----PDF-DEDRHDVIMRAHQANVLKMIA-IAIK-----VKD-FVPLIKLCQDYPSSIFCSVGTHPCHAH   69 (262)
Q Consensus         2 ~iD~H~HL~~----~~~-~~d~~~~i~~a~~~gv~~~i~-~~~~-----~~~-~~~~~~l~~~~p~~i~~a~GiHP~~~~   69 (262)
                      |||.|.|+-=    --| -.-.|-.|.++-+.||+.+|= .|||     +++ ..++.+|+++ .=.+|.-.|=+  .++
T Consensus        58 fID~HVHiiGGGGEgG~~TRTPE~~Ls~~t~~GvTtvVG~lGTDgi~R~m~~L~AKArAL~eE-Gvs~y~ltGaY--~vP  134 (391)
T TIGR01975        58 FIDQHVHIIGGGGEGGPKTRTPELTLSDITKGGVTTVVGLLGTDGITRDMESLLAKARALEEE-GVSCYVLTGAY--EVP  134 (391)
T ss_pred             CCCCCEEEEECCCCCCCCCCCHHHECCCEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHC-CEEEEEEECCE--ECC
T ss_conf             414745784057688688884322301201126248988862786225846789999865207-82699963331--355


Q ss_pred             CCCHHHHHHH-HHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-------CCC--CEEEC---HHHHHH
Q ss_conf             4678899885-3100133321004467755332211102467899998766420-------442--03300---023335
Q gi|254780215|r   70 EENEVLVDEL-VCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRIT-------GIP--LVIHS---RSADDD  136 (262)
Q Consensus        70 ~~~~~~~~~l-~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~-------~~p--v~iH~---r~a~~~  136 (262)
                      -.+-  -..+ ..++-=++++++|||-+==+|...|-=.|.      ..+|.|-       +||  |.+|.   .++-+-
T Consensus       135 ~~Tl--Tgsv~sDl~LIDkvIGvGeiAiSDHRSaqPt~~~L------~~~aAeARVGGLLgGK~Giv~~H~Gds~~~L~~  206 (391)
T TIGR01975       135 VRTL--TGSVKSDLLLIDKVIGVGEIAISDHRSAQPTVEEL------TNLAAEARVGGLLGGKPGIVNLHVGDSKRKLEP  206 (391)
T ss_pred             CCCC--CCCEEEEEEEEEEEEEEEEEEECCCCCCCCCHHHH------HHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHH
T ss_conf             2001--51124326788335542457221477887448999------999775112411168875689963698677779


Q ss_pred             HHHHHHHHHHCCCCCCCC-EECCCCHHHHH---HHHCCCCEEECCCCCC--HHH------HHHHHHHH-HCCCCCCEEEE
Q ss_conf             799985310003675331-12146402344---3210352020233221--133------32233332-10566717983
Q gi|254780215|r  137 MAAILQEEMKKGPFPFVI-HCFSSSQKLAD---ICLELGGYISFTGMIT--FPK------YDALRAIA-RGIPMDRVLVE  203 (262)
Q Consensus       137 ~l~iL~~~~~~~~~~~i~-H~FsG~~~~~~---~~l~~g~y~S~~g~i~--~~~------~~~~~e~v-~~iPldriLlE  203 (262)
                      +.+++.+ .--+...++= | -+-+.+..+   +|.+.|--+=|+..+-  +.+      ++-+..++ ..+|++|+-+=
T Consensus       207 i~~~v~~-~dvPi~q~lPTH-~nR~~~LFE~g~~fa~~GG~iDlTss~~p~~~~egev~p~eGlk~~l~~gvPle~vT~s  284 (391)
T TIGR01975       207 IEELVEE-TDVPITQFLPTH-INRNRELFEAGLEFAKKGGTIDLTSSIDPQFRKEGEVKPAEGLKKLLEAGVPLEKVTFS  284 (391)
T ss_pred             HHHHHHH-CCCCCCCCCCCC-CCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf             9999850-588700255776-47675689999999973980876027888755355437678999999638975235642


Q ss_pred             ECC----CCCCCC-CCCC-CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             078----667877-7688-7588244999999999872899899999999999998425
Q gi|254780215|r  204 TDS----PYIVPV-SCQG-KRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       204 TDs----P~l~p~-~~r~-~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      |||    |..-.. .+++ ....=..+...++.+=..-.+|+|...+.+++|--++++.
T Consensus       285 SDgnGS~P~Fde~g~l~~~~v~~~~sLf~~v~~av~~~~~pL~~al~v~T~nvA~~L~L  343 (391)
T TIGR01975       285 SDGNGSLPLFDENGELKGLGVGSVESLFEEVREAVKEGDVPLEKALRVITSNVAKVLKL  343 (391)
T ss_pred             ECCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCHHHCCEEECCCCCCCCCC
T ss_conf             35788746376787463357604166789999998514787657646440364554136


No 184
>PRK06801 hypothetical protein; Provisional
Probab=69.91  E-value=9.5  Score=19.04  Aligned_cols=46  Identities=20%  Similarity=0.159  Sum_probs=22.7

Q ss_pred             CCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHC
Q ss_conf             675331121464-023443210352-0202332211333223333210
Q gi|254780215|r  149 PFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARG  194 (262)
Q Consensus       149 ~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~  194 (262)
                      ..+.++|+=||. .+++++++++|. .+-|+..+..-=.+.+|+.+..
T Consensus       203 ~vPLVLHGgSGi~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~r~~l~~  250 (286)
T PRK06801        203 GLPLVLHGGSGISDTDFRRAISLGIHKINFYTGMSQAALAAVEQKMTH  250 (286)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHH
T ss_conf             999897799999999999999779769982868999999999999986


No 185
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=69.80  E-value=9.5  Score=19.02  Aligned_cols=20  Identities=15%  Similarity=0.066  Sum_probs=11.2

Q ss_pred             HHHHHHHCCCCCCEEEEECC
Q ss_conf             23333210566717983078
Q gi|254780215|r  187 ALRAIARGIPMDRVLVETDS  206 (262)
Q Consensus       187 ~~~e~v~~iPldriLlETDs  206 (262)
                      ++++.++.-...-|++|+..
T Consensus       240 ~l~~~ik~~~v~~If~Ep~~  259 (308)
T PRK09545        240 EIRTQLVEHKATCVFAEPQF  259 (308)
T ss_pred             HHHHHHHHHCCCEEEECCCC
T ss_conf             99999998399799965999


No 186
>PRK09389 (R)-citramalate synthase; Provisional
Probab=68.58  E-value=10  Score=18.86  Aligned_cols=16  Identities=31%  Similarity=0.472  Sum_probs=9.3

Q ss_pred             HHHHHCCCCCEEECHH
Q ss_conf             7664204420330002
Q gi|254780215|r  117 EASRITGIPLVIHSRS  132 (262)
Q Consensus       117 ~lA~e~~~pv~iH~r~  132 (262)
                      .+....+.|+.+||-+
T Consensus       179 ~l~~~~~~~i~vH~HN  194 (487)
T PRK09389        179 RLSESLKIPISIHCHN  194 (487)
T ss_pred             HHCCCCCCEEEEEECC
T ss_conf             3004678548997059


No 187
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=68.13  E-value=10  Score=18.80  Aligned_cols=51  Identities=24%  Similarity=0.464  Sum_probs=30.2

Q ss_pred             HHHHHHHHCCCCEEEEECCCH--HHHHHHHHHHHH-C---------CCCCC---CCCCCCCCCCCC
Q ss_conf             999999986998999916798--778999999985-5---------72332---112445443344
Q gi|254780215|r   20 DVIMRAHQANVLKMIAIAIKV--KDFVPLIKLCQD-Y---------PSSIF---CSVGTHPCHAHE   70 (262)
Q Consensus        20 ~~i~~a~~~gv~~~i~~~~~~--~~~~~~~~l~~~-~---------p~~i~---~a~GiHP~~~~~   70 (262)
                      +.+.+|.++||..+++++...  .|-.++....++ .         |+.+.   +-+|+.|.+...
T Consensus        95 dAilEAi~agI~liV~ITEgIP~~Dm~~v~~~~~~~~~t~liGPNcpGiI~Pg~~kiGimP~~i~~  160 (309)
T PTZ00187         95 AAIIEAIEAEIPLVVVITEGIPQHDMLKVKSMLLSQNKTRLIGPNCPGIIKPGECKIGIMPGHIHQ  160 (309)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEEECCCEEEEECCHHHCC
T ss_conf             899999977998799933898888899999999866995998999970270682089553478557


No 188
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=67.82  E-value=10  Score=18.76  Aligned_cols=35  Identities=11%  Similarity=0.187  Sum_probs=22.7

Q ss_pred             HHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHCC
Q ss_conf             99999999869989999167-9877899999998557
Q gi|254780215|r   19 HDVIMRAHQANVLKMIAIAI-KVKDFVPLIKLCQDYP   54 (262)
Q Consensus        19 ~~~i~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~p   54 (262)
                      ...+.++.+.|...++.+-+ +.++-+.+.+.+ +||
T Consensus        81 ~~~i~r~LD~Ga~GvivP~V~s~eea~~~V~a~-~Yp  116 (256)
T PRK10558         81 PVIIKRLLDIGFYNFLIPFVETAEEARRAVAST-RYP  116 (256)
T ss_pred             HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHE-EEC
T ss_conf             899999970798755614769999999999874-548


No 189
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=67.81  E-value=10  Score=18.76  Aligned_cols=18  Identities=11%  Similarity=0.200  Sum_probs=6.4

Q ss_pred             HHHHHHCCCCCCEEEEEC
Q ss_conf             333321056671798307
Q gi|254780215|r  188 LRAIARGIPMDRVLVETD  205 (262)
Q Consensus       188 ~~e~v~~iPldriLlETD  205 (262)
                      +.+++.-+|-....+||.
T Consensus       109 vlevIeLl~~~tFvlETN  126 (228)
T COG5014         109 VLEVIELLVNNTFVLETN  126 (228)
T ss_pred             HHHHHHHCCCCEEEEEEC
T ss_conf             999998634764999757


No 190
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=67.23  E-value=11  Score=18.68  Aligned_cols=57  Identities=19%  Similarity=0.154  Sum_probs=33.5

Q ss_pred             HHHHHHHHHCCCCCCCCEECCCCH-HHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999853100036753311214640-23443210352-0202332211333223333210
Q gi|254780215|r  138 AAILQEEMKKGPFPFVIHCFSSSQ-KLADICLELGG-YISFTGMITFPKYDALRAIARG  194 (262)
Q Consensus       138 l~iL~~~~~~~~~~~i~H~FsG~~-~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~  194 (262)
                      +++|++....-..+.++|.=||.. ++++++++.|. .|-|+..+...=.+.+++.+..
T Consensus       190 ~~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~r~~l~~  248 (283)
T pfam01116       190 FDRLKEIQAAVDVPLVLHGGSGVPDEEIRKAIKLGVAKINIDTDLQWAFTKAVREYLAE  248 (283)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHH
T ss_conf             99999999873998786589999999999999839669985759999999999999986


No 191
>pfam02811 PHP PHP domain. The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain.
Probab=67.04  E-value=11  Score=18.66  Aligned_cols=62  Identities=10%  Similarity=0.077  Sum_probs=36.1

Q ss_pred             EEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             6861388875--65226899999999869989999167-98778999999985572332112445
Q gi|254780215|r    3 IDTHCHLLLP--DFDEDRHDVIMRAHQANVLKMIAIAI-KVKDFVPLIKLCQDYPSSIFCSVGTH   64 (262)
Q Consensus         3 iD~H~HL~~~--~~~~d~~~~i~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~p~~i~~a~GiH   64 (262)
                      +|-|+|-...  +-....++++++|.+.|+..+..+-. +........+.+++....+.+-+|+-
T Consensus         1 v~LH~HT~~S~~dg~~~i~~lv~~a~~~g~~alaiTDh~~~~g~~~~~~~~~~~g~~ik~I~G~E   65 (173)
T pfam02811         1 VDLHVHTDFSLLDGALSIEELVKAAKELGLEAIAITDHDNLFGAPEFYEAAKLEKAGLKPIIGAE   65 (173)
T ss_pred             CCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             98705773715443679999999999869987999667750519999999985478980788879


No 192
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=66.74  E-value=11  Score=18.62  Aligned_cols=116  Identities=20%  Similarity=0.307  Sum_probs=55.9

Q ss_pred             EEECCCCCHHHH-CCHHHHHHHHHHCCCCEEEEECCCHH--------------HHHHHHHHHHH-CCCCCCCCCCCCCCC
Q ss_conf             861388875652-26899999999869989999167987--------------78999999985-572332112445443
Q gi|254780215|r    4 DTHCHLLLPDFD-EDRHDVIMRAHQANVLKMIAIAIKVK--------------DFVPLIKLCQD-YPSSIFCSVGTHPCH   67 (262)
Q Consensus         4 D~H~HL~~~~~~-~d~~~~i~~a~~~gv~~~i~~~~~~~--------------~~~~~~~l~~~-~p~~i~~a~GiHP~~   67 (262)
                      ++=.||+..... ..+...+.++...||..+++.+-|+.              +.....++.+. +++.....++.||..
T Consensus        60 ~~i~Hltcr~~n~~~l~~~L~~~~~~Gi~niLaLrGD~p~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~  139 (274)
T cd00537          60 EPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEG  139 (274)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCC
T ss_conf             82268601789999999999999985986388735888877888888887746799999999997589850056668776


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCCEE
Q ss_conf             34467889988531001333210044677553322111024678999987664204--42033
Q gi|254780215|r   68 AHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITG--IPLVI  128 (262)
Q Consensus        68 ~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~--~pv~i  128 (262)
                      -.+. .+....+..+..  ++    +.|=||.-++.-.+  .+.|.+.++.+++.+  .||+.
T Consensus       140 hp~~-~~~~~di~~L~~--K~----~aGA~f~iTQ~~Fd--~~~~~~f~~~~~~~Gi~vPIi~  193 (274)
T cd00537         140 HPEA-PSLEEDIKRLKR--KV----DAGADFIITQLFFD--NDAFLRFVDRCRAAGITVPIIP  193 (274)
T ss_pred             CCCC-CHHHHHHHHHHH--HH----HHHHHHHHHHHEEC--HHHHHHHHHHHHHCCCCCCEEE
T ss_conf             8774-168899999999--99----81426678644333--9999999999997499986563


No 193
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776    This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=66.72  E-value=11  Score=18.61  Aligned_cols=180  Identities=17%  Similarity=0.199  Sum_probs=96.1

Q ss_pred             CHHHHCCH-HHHHHHHHHCCCCE--EEEECCCHHHHHHHHHHHHHCCC-CCCC--CCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             75652268-99999999869989--99916798778999999985572-3321--1244544334467889988531001
Q gi|254780215|r   11 LPDFDEDR-HDVIMRAHQANVLK--MIAIAIKVKDFVPLIKLCQDYPS-SIFC--SVGTHPCHAHEENEVLVDELVCLAS   84 (262)
Q Consensus        11 ~~~~~~d~-~~~i~~a~~~gv~~--~i~~~~~~~~~~~~~~l~~~~p~-~i~~--a~GiHP~~~~~~~~~~~~~l~~l~~   84 (262)
                      .+.|-.|. +.++++|.+.|++=  |.--=.|+..-..+++-+|+|.. ++-.  |+-+=|-+.-+.   +++.-++|+ 
T Consensus        85 YRHYADDVVe~FV~~a~~NG~DVFRiFDALND~RNl~~ai~a~Kk~g~dHvQg~iSYTtSPvHTl~~---yl~la~~L~-  160 (616)
T TIGR01108        85 YRHYADDVVEAFVKKAVENGLDVFRIFDALNDPRNLQKAIEAAKKHGADHVQGAISYTTSPVHTLEK---YLELAKELL-  160 (616)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH---HHHHHHHHH-
T ss_conf             4158436899999999975980899512458877899999999973897899997124684367888---999999999-


Q ss_pred             CCCCCEECCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCC-CCCEEECHHHHH-HHHHHHHHHHHC-CCCCCCCEECCC
Q ss_conf             333210044677553--322111024678999987664204-420330002333-579998531000-367533112146
Q gi|254780215|r   85 HPRVVAIGETGLDRY--HNAHTIEEQKVVFLRHIEASRITG-IPLVIHSRSADD-DMAAILQEEMKK-GPFPFVIHCFSS  159 (262)
Q Consensus        85 ~~~~~aIGEiGLD~~--~~~~~~e~Q~~vF~~ql~lA~e~~-~pv~iH~r~a~~-~~l~iL~~~~~~-~~~~~i~H~FsG  159 (262)
                              |+|.|-=  .|-+-+=.=+..++=-=+|=++++ +||-|||---.+ .-+..++..-.. .-.=.-+=+|||
T Consensus       161 --------~~G~DSI~IKDMaGlLTP~~AYELV~alK~~~~n~pvhLH~H~TtGmA~~AllkA~EAG~d~iDTAisS~S~  232 (616)
T TIGR01108       161 --------EMGVDSICIKDMAGLLTPKVAYELVSALKKEFGNLPVHLHSHATTGMAEMALLKAIEAGADMIDTAISSMSG  232 (616)
T ss_pred             --------HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCC
T ss_conf             --------818860552020046441589999999974239746886324723379999998887078800200552347


Q ss_pred             CH------HHHHHHHCCCCEEECCCCCC------H----HHHHHHHHHHHCCCCCCEEE
Q ss_conf             40------23443210352020233221------1----33322333321056671798
Q gi|254780215|r  160 SQ------KLADICLELGGYISFTGMIT------F----PKYDALRAIARGIPMDRVLV  202 (262)
Q Consensus       160 ~~------~~~~~~l~~g~y~S~~g~i~------~----~~~~~~~e~v~~iPldriLl  202 (262)
                      ..      .+..-+-+.|+=-++.-.+.      |    +|-.+.-|.--..|.-|||+
T Consensus       233 gtSHPptE~lv~~L~~~gyD~gld~~~L~~i~~YFr~VRkKY~~fle~~~~~~D~RiLv  291 (616)
T TIGR01108       233 GTSHPPTETLVAALRGTGYDTGLDIELLLEIADYFRKVRKKYSQFLESQLKGPDSRILV  291 (616)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf             88887479999997057874310279999999999999999988607677788844899


No 194
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=64.52  E-value=12  Score=18.34  Aligned_cols=58  Identities=19%  Similarity=0.174  Sum_probs=31.1

Q ss_pred             HHHHHHHHCCCCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             9985310003675331121464-023443210352-020233221133322333321056
Q gi|254780215|r  139 AILQEEMKKGPFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIP  196 (262)
Q Consensus       139 ~iL~~~~~~~~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP  196 (262)
                      +.|++....-..+.++|+=||. .++.++++++|. .+-|+..+...=.+.+|+.+..=|
T Consensus       192 ~~L~~I~~~~~vPLVLHGgSG~~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~r~~l~~~p  251 (284)
T PRK09195        192 DRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVATELKIAFSQALKNYLTEHP  251 (284)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCC
T ss_conf             999999997499989878999899999999984976998685899999999999998687


No 195
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=64.51  E-value=12  Score=18.34  Aligned_cols=85  Identities=15%  Similarity=0.161  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEE-----------CCCCHHHHHHHHCCCCEEEC
Q ss_conf             78999987664204420330002--333579998531000367533112-----------14640234432103520202
Q gi|254780215|r  110 VVFLRHIEASRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHC-----------FSSSQKLADICLELGGYISF  176 (262)
Q Consensus       110 ~vF~~ql~lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~-----------FsG~~~~~~~~l~~g~y~S~  176 (262)
                      ...+.-++.|+++++.+.+-.-+  ..+. .+.+.+   -+...+++|.           ..-+.+.++++.+.|+-+|+
T Consensus        93 ~Ti~~~~~~A~~~g~~v~vdl~~~~~~e~-a~~~~~---lgv~~~i~H~~~D~~~~g~~~~~~~~~~ik~l~~~~~~vaV  168 (216)
T PRK13306         93 PTIKAALKVAKEFNGEIQIELYGNWTWEQ-AQQWRD---AGIQQVIYHRSRDAELAGVAWGEKDLNKVKKLSDMGFKVSV  168 (216)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCHHH-HHHHHH---CCCCEEEEECCHHHHHCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             99999999999809836999737877888-999997---69987887603224424678887789999997636982998


Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             33221133322333321056671798
Q gi|254780215|r  177 TGMITFPKYDALRAIARGIPMDRVLV  202 (262)
Q Consensus       177 ~g~i~~~~~~~~~e~v~~iPldriLl  202 (262)
                      +|-+.-+.   + +.++..+.+-+.+
T Consensus       169 aGGI~~~~---~-~~~~~~~~~ivIV  190 (216)
T PRK13306        169 TGGIVPED---L-KLFKGIPIKTFIA  190 (216)
T ss_pred             CCCCCHHH---H-HHHHCCCCCEEEE
T ss_conf             59989899---9-9986279989998


No 196
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=64.28  E-value=12  Score=18.31  Aligned_cols=17  Identities=24%  Similarity=0.472  Sum_probs=12.1

Q ss_pred             HHHHHCCCCCEEECHHH
Q ss_conf             76642044203300023
Q gi|254780215|r  117 EASRITGIPLVIHSRSA  133 (262)
Q Consensus       117 ~lA~e~~~pv~iH~r~a  133 (262)
                      ++....+.|+.+||-+-
T Consensus       182 ~l~~~~~~~i~~H~HNd  198 (378)
T PRK11858        182 ELVEAVDIPIEVHCHND  198 (378)
T ss_pred             HHHHHCCCCEEEEEECC
T ss_conf             99972698559997077


No 197
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=63.27  E-value=12  Score=18.41  Aligned_cols=150  Identities=15%  Similarity=0.150  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC----------CCCCHHHHHHHHHHCCCCC
Q ss_conf             899999999869989999167987789999999855723321124454433----------4467889988531001333
Q gi|254780215|r   18 RHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHA----------HEENEVLVDELVCLASHPR   87 (262)
Q Consensus        18 ~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~----------~~~~~~~~~~l~~l~~~~~   87 (262)
                      .-++++.|.++|...+=.=.-++++...     ....   ...++.++.+.          .+.+.+++.+|..++..-.
T Consensus        18 Ak~LI~~A~~sGadaVKFQ~~~~~~~~~-----~~~~---~~~y~~~~~~~~~~~~~~~kk~els~~~~~~L~~~~~~~g   89 (329)
T TIGR03569        18 AKKLVDAAAEAGADAVKFQTFKAEDLVS-----KNAP---KAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKG   89 (329)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCHHCC-----CCCC---HHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf             9999999999496999930787113278-----1103---0330126898886199999871489999999999999729


Q ss_pred             CC------------EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH-HH---HHHHHHHHHHHCCCCC
Q ss_conf             21------------00446775533221110246789999876642044203300023-33---5799985310003675
Q gi|254780215|r   88 VV------------AIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA-DD---DMAAILQEEMKKGPFP  151 (262)
Q Consensus        88 ~~------------aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a-~~---~~l~iL~~~~~~~~~~  151 (262)
                      +.            -+-+.|.|++.-.+. +.+   ....|+-+.+.++||+|=+-.+ .+   +++++++........=
T Consensus        90 i~~~~s~fd~~s~~~l~~~~~~~~KIaS~-d~~---n~~Li~~i~~~~kpiiiStG~s~~~EI~~av~~~~~~~~~~~~i  165 (329)
T TIGR03569        90 IEFLSTPFDLESADFLEDLGVPRFKIPSG-EIT---NAPLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNI  165 (329)
T ss_pred             CEEEECCCCHHHHHHHHHCCCCEEEECCC-CCC---CHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCE
T ss_conf             92998969899999998649997997923-105---48999999974897899678623999999999999748865576


Q ss_pred             CCCEECCCCH--------HHHHHHHC-CCCEEECCCC
Q ss_conf             3311214640--------23443210-3520202332
Q gi|254780215|r  152 FVIHCFSSSQ--------KLADICLE-LGGYISFTGM  179 (262)
Q Consensus       152 ~i~H~FsG~~--------~~~~~~l~-~g~y~S~~g~  179 (262)
                      +++||.|.=+        ..++.+.+ .++-+|||.-
T Consensus       166 ~llhC~s~YP~~~~~~nL~~i~~lk~~f~~~iG~SDH  202 (329)
T TIGR03569       166 TLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDH  202 (329)
T ss_pred             EEEEECCCCCCCHHHCCHHHHHHHHHHCCCCEEECCC
T ss_conf             8864378899993764789999999985998684797


No 198
>LOAD_php consensus
Probab=62.62  E-value=9.7  Score=18.98  Aligned_cols=63  Identities=14%  Similarity=0.155  Sum_probs=35.4

Q ss_pred             EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEECCCH-HHHHHHHHHHHHC--CCCCCCCCCCC
Q ss_conf             16861388875--6522689999999986998999916798-7789999999855--72332112445
Q gi|254780215|r    2 LIDTHCHLLLP--DFDEDRHDVIMRAHQANVLKMIAIAIKV-KDFVPLIKLCQDY--PSSIFCSVGTH   64 (262)
Q Consensus         2 ~iD~H~HL~~~--~~~~d~~~~i~~a~~~gv~~~i~~~~~~-~~~~~~~~l~~~~--p~~i~~a~GiH   64 (262)
                      ++|-|||-...  +-....++++++|.+.|+..+..+-.+. ....+..+.+++-  ...+.+-+|+-
T Consensus         1 ~v~LH~HS~~S~~dg~~~~~elv~~A~~~G~~aiaiTDh~~~~g~~~~~~~~~~~~~~~gik~I~G~E   68 (206)
T LOAD_php          1 FIDLHVHSVYSLLDGALTLEELVEEAKKLGLEAIAITDHGNLFGALEFYKYAKEIREKKGIKPIIGVE   68 (206)
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             96642052225543117999999999987998899958997435999999998753206963788879


No 199
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830   Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=62.55  E-value=13  Score=18.11  Aligned_cols=162  Identities=14%  Similarity=0.202  Sum_probs=79.0

Q ss_pred             HHHHHHCCCCEEEE-ECCCH----------------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             99999869989999-16798----------------77899999998557233211244544334467889988531001
Q gi|254780215|r   22 IMRAHQANVLKMIA-IAIKV----------------KDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLAS   84 (262)
Q Consensus        22 i~~a~~~gv~~~i~-~~~~~----------------~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~   84 (262)
                      |+.|.+.||+.+.. +.|++                +....+.+++|.|.  ++..|  =|..|..   ...+.|.++.+
T Consensus        78 ID~AidcgvdsIh~fiaTSpiH~KYKl~~K~~devle~~veAvEYAKEHG--LiVEf--SAEDATR---td~dfLIk~~k  150 (371)
T TIGR02090        78 IDKAIDCGVDSIHTFIATSPIHLKYKLKNKSRDEVLEKAVEAVEYAKEHG--LIVEF--SAEDATR---TDIDFLIKVFK  150 (371)
T ss_pred             HHHHHHCCCCEEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC--CEEEE--CCCCCCC---CCHHHHHHHHH
T ss_conf             01564369877899804885787234888789999999999898775257--35531--7788765---86789999987


Q ss_pred             CCCCCEECCCCCCCCC--C----CCCCHHHHHHHHHHHHHHHHCC--CCCEEECHHHHH-HHHHHHHHHHHCCCCCCCCE
Q ss_conf             3332100446775533--2----2111024678999987664204--420330002333-57999853100036753311
Q gi|254780215|r   85 HPRVVAIGETGLDRYH--N----AHTIEEQKVVFLRHIEASRITG--IPLVIHSRSADD-DMAAILQEEMKKGPFPFVIH  155 (262)
Q Consensus        85 ~~~~~aIGEiGLD~~~--~----~~~~e~Q~~vF~~ql~lA~e~~--~pv~iH~r~a~~-~~l~iL~~~~~~~~~~~i~H  155 (262)
                      ..    + |.|=|+-.  |    .+|..  .+.+-+.  +-.+.+  +||+|||=+=++ .+..-+.-....+   -=+|
T Consensus       151 ~A----~-eAGADRi~~~DTVGV~~P~k--m~~l~k~--~k~~~kKd~~~sVHCHNDFGlAtANsi~gv~aGA---~~vH  218 (371)
T TIGR02090       151 KA----E-EAGADRINVADTVGVLTPQK--MEELIKK--IKENVKKDLPVSVHCHNDFGLATANSIAGVLAGA---EQVH  218 (371)
T ss_pred             HH----H-HCCCCEEEECCCCCCCCHHH--HHHHHHH--HHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCC---EEEE
T ss_conf             13----3-21677755078556368267--9999999--9986358870588620860188999999972283---5773


Q ss_pred             EC-------CCCHHHHHHHHCC----CCEEECCCCCCHHHHHHHHHHHH-CCCCCCEEE
Q ss_conf             21-------4640234432103----52020233221133322333321-056671798
Q gi|254780215|r  156 CF-------SSSQKLADICLEL----GGYISFTGMITFPKYDALRAIAR-GIPMDRVLV  202 (262)
Q Consensus       156 ~F-------sG~~~~~~~~l~~----g~y~S~~g~i~~~~~~~~~e~v~-~iPldriLl  202 (262)
                      |=       .||+..=+-.+.|    |+-..+.-...|+-++-..++.+ .+|.++=.+
T Consensus       219 ~TvNGiGERAGNAaLEEVV~AL~~LYG~~~~IK~ekLYE~SrlVs~l~~~~VPpNKaIV  277 (371)
T TIGR02090       219 VTVNGIGERAGNAALEEVVMALKVLYGVDTKIKTEKLYETSRLVSKLSGVKVPPNKAIV  277 (371)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf             55557610134588999999989871410244530020177789987178888967732


No 200
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=61.86  E-value=13  Score=18.03  Aligned_cols=35  Identities=29%  Similarity=0.354  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHH
Q ss_conf             78999987664204420330002333579998531
Q gi|254780215|r  110 VVFLRHIEASRITGIPLVIHSRSADDDMAAILQEE  144 (262)
Q Consensus       110 ~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~  144 (262)
                      +.+...++.|.+.++|+++=+-+-..+-++.|++.
T Consensus        80 ~~~~~~~~~~~~~~~~~ViGTTG~~~~~~~~i~~~  114 (265)
T PRK00048         80 EATLENLEFALEHGKPLVIGTTGFTEEQLAALREA  114 (265)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf             99999999999749977996089998999999974


No 201
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=61.69  E-value=14  Score=18.01  Aligned_cols=81  Identities=15%  Similarity=0.169  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHC-CCCCEEECHH-HHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCC-EEECCCCCCHHHHHH
Q ss_conf             899998766420-4420330002-3335799985310003675331121464023443210352-020233221133322
Q gi|254780215|r  111 VFLRHIEASRIT-GIPLVIHSRS-ADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGG-YISFTGMITFPKYDA  187 (262)
Q Consensus       111 vF~~ql~lA~e~-~~pv~iH~r~-a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~-y~S~~g~i~~~~~~~  187 (262)
                      -|++.-++.+.. +.|+++|--. --.+.++.+..+....  +   -.+.-+.+++++.+.+|. .+-|+..+...=...
T Consensus       204 ~~d~L~~I~~~v~~vPLVLHGgS~~p~~~v~~~~~~Gg~~--~---~~~G~~de~i~~Ai~~GI~KvNi~Tdl~~a~~~~  278 (321)
T PRK07084        204 RFDILAEIEKRIPGFPIVLHGASSVPQELVETINQHGGKL--K---DAIGIPEEQLRKAAKSAVCKINIDSDGRLAMTAA  278 (321)
T ss_pred             CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCC--C---CCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHH
T ss_conf             6999999998577998685289988278877787528855--5---6789999999999986976998180789999999


Q ss_pred             HHHHHHCCC
Q ss_conf             333321056
Q gi|254780215|r  188 LRAIARGIP  196 (262)
Q Consensus       188 ~~e~v~~iP  196 (262)
                      +|+.+..-|
T Consensus       279 ir~~l~~~p  287 (321)
T PRK07084        279 IRKVLDEKP  287 (321)
T ss_pred             HHHHHHHCC
T ss_conf             999998697


No 202
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=61.14  E-value=14  Score=17.94  Aligned_cols=162  Identities=19%  Similarity=0.242  Sum_probs=82.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCC-----------
Q ss_conf             999916798778999999985572332-11244544334467889988531001333210044677553-----------
Q gi|254780215|r   32 KMIAIAIKVKDFVPLIKLCQDYPSSIF-CSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRY-----------   99 (262)
Q Consensus        32 ~~i~~~~~~~~~~~~~~l~~~~p~~i~-~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~-----------   99 (262)
                      ++..+|..=.--..+.+...+.|+.-. .++. +|.......+.           .++.++|.+|..-.           
T Consensus         4 ki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~-~~~~~~~g~d~-----------ge~~g~~~~gv~v~~~~~~~~~~~D   71 (266)
T COG0289           4 KVAVAGASGRMGRTLIRAVLEAPDLELVAAFD-RPGSLSLGSDA-----------GELAGLGLLGVPVTDDLLLVKADAD   71 (266)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCCCEEEEEEE-CCCCCCCCCCH-----------HHHCCCCCCCCEEECCHHHCCCCCC
T ss_conf             69997578727899999985289946999981-37842234311-----------2321446557332063433046898


Q ss_pred             --CCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCC-EECCCCHHHHHHHHCCCCEEEC
Q ss_conf             --3221110246789999876642044203300023335799985310003675331-1214640234432103520202
Q gi|254780215|r  100 --HNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVI-HCFSSSQKLADICLELGGYISF  176 (262)
Q Consensus       100 --~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~-H~FsG~~~~~~~~l~~g~y~S~  176 (262)
                        -+.+..    +.....++.|.+.++|++|=+-+-.++-++.|++...+  .++++ ..                 ||+
T Consensus        72 V~IDFT~P----~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~N-----------------fSi  128 (266)
T COG0289          72 VLIDFTTP----EATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPN-----------------FSL  128 (266)
T ss_pred             EEEECCCC----HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH--CCEEEECC-----------------CHH
T ss_conf             89989982----54699999999769986997999998999999999853--89899656-----------------407


Q ss_pred             CCCCCHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHCCCH
Q ss_conf             33221133322333321056-6717983078667877768875882-449999999998728998
Q gi|254780215|r  177 TGMITFPKYDALRAIARGIP-MDRVLVETDSPYIVPVSCQGKRNEP-AYVVNTAKALAKEKDVSY  239 (262)
Q Consensus       177 ~g~i~~~~~~~~~e~v~~iP-ldriLlETDsP~l~p~~~r~~~n~P-~~i~~~~~~iA~i~~~~~  239 (262)
                      +-.+.++=.+   .+.+.++ -|-=++|+-        -|.|.--| ..-..+++.+|+.++.+.
T Consensus       129 Gvnll~~l~~---~aak~l~~~DiEIiE~H--------Hr~K~DAPSGTAl~lae~ia~~~~~~~  182 (266)
T COG0289         129 GVNLLFKLAE---QAAKVLDDYDIEIIEAH--------HRHKKDAPSGTALKLAEAIAEARGQDL  182 (266)
T ss_pred             HHHHHHHHHH---HHHHHCCCCCEEEHHHH--------CCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999---99986677887863232--------366788986789999999998606565


No 203
>PRK12857 putative aldolase; Reviewed
Probab=60.95  E-value=14  Score=17.92  Aligned_cols=57  Identities=19%  Similarity=0.144  Sum_probs=34.6

Q ss_pred             HHHHHHHHHCCCCCCCCEECCCCH-HHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999853100036753311214640-23443210352-0202332211333223333210
Q gi|254780215|r  138 AAILQEEMKKGPFPFVIHCFSSSQ-KLADICLELGG-YISFTGMITFPKYDALRAIARG  194 (262)
Q Consensus       138 l~iL~~~~~~~~~~~i~H~FsG~~-~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~  194 (262)
                      +++|++....-+.+.|+|.=||.. ++++++++.|. .|-|+..+...=.+.+|+.+..
T Consensus       191 ~~~L~~I~~~~~vPLVLHGgSGi~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~r~~l~~  249 (284)
T PRK12857        191 FDRLAKIRELVNIPLVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREAFVAALRRVLEK  249 (284)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHH
T ss_conf             99999998616999897689999999999999809759974879999999999999986


No 204
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=60.92  E-value=14  Score=17.92  Aligned_cols=182  Identities=14%  Similarity=0.126  Sum_probs=81.2

Q ss_pred             EEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHH------HHHHH-------HHHHHHCCCCCCCCCCCCC----C
Q ss_conf             86138887565226899999999869989999167987------78999-------9999855723321124454----4
Q gi|254780215|r    4 DTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVK------DFVPL-------IKLCQDYPSSIFCSVGTHP----C   66 (262)
Q Consensus         4 D~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~------~~~~~-------~~l~~~~p~~i~~a~GiHP----~   66 (262)
                      ..-.|||+-   .+. +.+.+|.+.|..-++.=+....      +|+..       .+++..+.-.|=.=+|.=.    -
T Consensus        77 PValHLDHg---~~~-e~i~~ai~~GFtSVMiDgS~lp~~~~~~sfeeNi~~Tkevve~Ah~~gv~VEaElG~vGg~e~g  152 (347)
T PRK09196         77 PVVMHQDHG---NSP-ATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETG  152 (347)
T ss_pred             CEEEECCCC---CCH-HHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf             889974788---999-9999998648983897365565556777889999999999999987398499960210475667


Q ss_pred             -------C-CC-------CCC-HHHHHHHHH-HCCCCCCCEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCE
Q ss_conf             -------3-34-------467-889988531-0013332100446-7755332211102467899998766420-44203
Q gi|254780215|r   67 -------H-AH-------EEN-EVLVDELVC-LASHPRVVAIGET-GLDRYHNAHTIEEQKVVFLRHIEASRIT-GIPLV  127 (262)
Q Consensus        67 -------~-~~-------~~~-~~~~~~l~~-l~~~~~~~aIGEi-GLD~~~~~~~~e~Q~~vF~~ql~lA~e~-~~pv~  127 (262)
                             . +.       -++ ++....+.+ ---+.-.+|||-+ |.-++ ...+ ....--|++.=++.... +.|++
T Consensus       153 ~~g~edg~~~e~~~~~~~~yTdPeeA~~Fv~~TgvD~LAvaiGt~HG~YK~-~~~P-~~~~L~~~rL~eI~~~vp~~pLV  230 (347)
T PRK09196        153 MGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKF-TRKP-TGDVLAIDRIKEIHARIPNTHLV  230 (347)
T ss_pred             CCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCC-CCCC-CCCCCCHHHHHHHHHHCCCCCEE
T ss_conf             777666755555554443168999999999974877030011013466657-7899-72203699999999845678678


Q ss_pred             EECH-HHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             3000-23335799985310003675331121464023443210352-020233221133322333321056
Q gi|254780215|r  128 IHSR-SADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGG-YISFTGMITFPKYDALRAIARGIP  196 (262)
Q Consensus       128 iH~r-~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP  196 (262)
                      +|-- +--.+.++.+..+....+     -.+.-+.+++++.+++|. .+-++..+..--...+|+.+..=|
T Consensus       231 LHGgS~vp~~~~~~~~~~gg~~~-----~~~G~~~e~i~~ai~~Gv~KiNi~Tdl~~a~~~avr~~l~~np  296 (347)
T PRK09196        231 MHGSSSVPQELLDIINEYGGDMP-----ETYGVPVEEIQEGIKHGVRKVNIDTDLRLASTGAIRRFLAENP  296 (347)
T ss_pred             EECCCCCCHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf             77896886789999987367665-----4469899999999980964663374899999999999998687


No 205
>pfam01717 Meth_synt_2 Cobalamin-independent synthase, Catalytic domain. This is a family of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, EC:2.1.1.14 from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length. This domain contains the catalytic residues of the enzyme.
Probab=60.37  E-value=14  Score=17.86  Aligned_cols=81  Identities=15%  Similarity=0.203  Sum_probs=46.1

Q ss_pred             CCCCCEEE-CHHHHHHHHHHHHHHHHCCCCCCCCEECC----CCHHHHHHHHCCCCEEECCCCCCHHH---------HHH
Q ss_conf             04420330-00233357999853100036753311214----64023443210352020233221133---------322
Q gi|254780215|r  122 TGIPLVIH-SRSADDDMAAILQEEMKKGPFPFVIHCFS----SSQKLADICLELGGYISFTGMITFPK---------YDA  187 (262)
Q Consensus       122 ~~~pv~iH-~r~a~~~~l~iL~~~~~~~~~~~i~H~Fs----G~~~~~~~~l~~g~y~S~~g~i~~~~---------~~~  187 (262)
                      .+..+.+| ||+-+..++..+.+.    +..+++.=|.    |+.+.++.+- .+-.+.+ |.|+-+.         .++
T Consensus       209 ~~~~i~~H~C~gny~~i~~~l~~~----~vd~~~lE~~~~~~~~~~~l~~~~-~~k~v~l-GvVd~k~~~lE~~e~v~~r  282 (324)
T pfam01717       209 LDTQVHTHVCYSDFNDILDAIDAL----DVDVLTIEFARSDMENLEALEEWG-YGKGVGF-GVVDIHSPRVPSVEEIKAL  282 (324)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHC----CCCEEEEECCCCCCHHHHHHHHCC-CCCEEEE-EEEECCCCCCCCHHHHHHH
T ss_conf             998899996688849999999748----988898111689811458888479-9984998-8881789998999999999


Q ss_pred             HHHHHHCCCCCCEEEEECCCC
Q ss_conf             333321056671798307866
Q gi|254780215|r  188 LRAIARGIPMDRVLVETDSPY  208 (262)
Q Consensus       188 ~~e~v~~iPldriLlETDsP~  208 (262)
                      ++++++.+|+|||.+-+|+=+
T Consensus       283 I~~aa~~v~~erL~~spdCGf  303 (324)
T pfam01717       283 IKKALDIVPADRLWVNPDCGL  303 (324)
T ss_pred             HHHHHHHCCHHHEEECCCCCC
T ss_conf             999998489888998788898


No 206
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063   1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=60.08  E-value=7.1  Score=19.88  Aligned_cols=47  Identities=19%  Similarity=0.253  Sum_probs=29.1

Q ss_pred             CHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             40234432103520202332211333223333210566717983078
Q gi|254780215|r  160 SQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDS  206 (262)
Q Consensus       160 ~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDs  206 (262)
                      |.+.+++++++|..-=|=|++-+++.+-++++++.++.+||.+==|+
T Consensus        84 s~e~v~~ll~~Gv~RVI~GT~A~~~~~~v~~~~~~~g~~~i~V~lD~  130 (241)
T TIGR00007        84 SLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDA  130 (241)
T ss_pred             CHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             88999999973985799733221086999999998489965999863


No 207
>KOG0081 consensus
Probab=59.79  E-value=12  Score=18.36  Aligned_cols=50  Identities=24%  Similarity=0.367  Sum_probs=37.7

Q ss_pred             HHHHHHHH--HHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHH-HHHHHCCCCCEEEC
Q ss_conf             88998853--100133321004467755332211102467899998-76642044203300
Q gi|254780215|r   73 EVLVDELV--CLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHI-EASRITGIPLVIHS  130 (262)
Q Consensus        73 ~~~~~~l~--~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql-~lA~e~~~pv~iH~  130 (262)
                      .+|+.+|.  .++++|.++-.|        +..+++.|+.|=+.|. +||.++++|-.=-+
T Consensus       110 rnWlSQL~~hAYcE~PDivlcG--------NK~DL~~~R~Vs~~qa~~La~kyglPYfETS  162 (219)
T KOG0081         110 RNWLSQLQTHAYCENPDIVLCG--------NKADLEDQRVVSEDQAAALADKYGLPYFETS  162 (219)
T ss_pred             HHHHHHHHHHHCCCCCCEEEEC--------CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             9899998774013799989986--------7123166655239999999997399826602


No 208
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=58.53  E-value=15  Score=17.65  Aligned_cols=104  Identities=10%  Similarity=0.143  Sum_probs=56.2

Q ss_pred             CHHHHHHHHHHCCCCEEEEECC-------CHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             6899999999869989999167-------987789999999855-72332112445443344678899885310013332
Q gi|254780215|r   17 DRHDVIMRAHQANVLKMIAIAI-------KVKDFVPLIKLCQDY-PSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRV   88 (262)
Q Consensus        17 d~~~~i~~a~~~gv~~~i~~~~-------~~~~~~~~~~l~~~~-p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~   88 (262)
                      .+...++...+.|+..++..|+       +.++..++.+.+.+. ++.+-..+|+=-    ....+.++ +.+.+.+..+
T Consensus        23 ~l~~~v~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~v~~~~~~~~~~~~pvi~gv~~----~~t~~~i~-~a~~A~~~Ga   97 (292)
T PRK03170         23 ALRKLVDYQIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS----NSTAEAIE-LTKFAEKAGA   97 (292)
T ss_pred             HHHHHHHHHHHCCCCEEEECEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC----CCHHHHHH-HHHHHHHCCC
T ss_conf             999999999977999999683241411289999999999999873897128843787----67999999-9998987599


Q ss_pred             CEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf             100446775533221110246789999876642044203300
Q gi|254780215|r   89 VAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS  130 (262)
Q Consensus        89 ~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~  130 (262)
                      -|| -+--.||..    ..|..+++..-++|...++|+++..
T Consensus        98 dav-~v~~P~y~~----~s~~~l~~~f~~ia~~~~~Pi~lYn  134 (292)
T PRK03170         98 DGA-LVVTPYYNK----PTQEGLYQHFKAIAEATDLPIILYN  134 (292)
T ss_pred             CEE-EECCCCCCC----CCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             989-961776889----9999999999999863599769873


No 209
>TIGR01703 hybrid_clust hydroxylamine reductase; InterPro: IPR010048   Hybrid cluster proteins (HCP, or Prismane) have been identified in bacteria, archaea and eukaryotic protozoa. No specific function has yet been assigned to these proteins, but it may involve oxidoreductase enzymatic activity. These proteins contain one 4Fe-4S cluster, and one hybrid 4Fe-2O-2S cluster, the latter being similar to the Ni-Fe-S cluster found in carbon monoxide dehydrogenase enzymes (IPR010047 from INTERPRO) , .    This subfamily is heterogeneous with respect to the presence or absence of a region of about 100 amino acids not far from the N terminus of the protein. Members have been described as monomeric. ; GO: 0016661 oxidoreductase activity acting on other nitrogenous compounds as donors, 0051536 iron-sulfur cluster binding, 0006118 electron transport, 0005737 cytoplasm.
Probab=57.99  E-value=16  Score=17.59  Aligned_cols=190  Identities=17%  Similarity=0.177  Sum_probs=113.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHH----CCCCC-----------CCCCCCCCCCCCCCCHHHHHHHHHH-------------
Q ss_conf             8999916798778999999985----57233-----------2112445443344678899885310-------------
Q gi|254780215|r   31 LKMIAIAIKVKDFVPLIKLCQD----YPSSI-----------FCSVGTHPCHAHEENEVLVDELVCL-------------   82 (262)
Q Consensus        31 ~~~i~~~~~~~~~~~~~~l~~~----~p~~i-----------~~a~GiHP~~~~~~~~~~~~~l~~l-------------   82 (262)
                      ..|++.|.|+.+.+..++-.+.    -.=+|           ||.+==.||.+-++.-.|.+|-+++             
T Consensus       247 ~aILvsGHDL~DL~~LL~QT~gmGle~GinVYTHgEMLPAhgYP~lKkYpHL~Gn~Gg~W~~Q~~EF~~FpGpIlmTsNC  326 (567)
T TIGR01703       247 KAILVSGHDLKDLEELLEQTEGMGLETGINVYTHGEMLPAHGYPLLKKYPHLVGNYGGAWQNQQREFAKFPGPILMTSNC  326 (567)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             74687568889999999987415644575435465334011386135064211537885433120044789860213153


Q ss_pred             -----CCCCCCCEECCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHCC-CCCEEECHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             -----013332100446775533---22111024678999987664204-420330002333579998531000367533
Q gi|254780215|r   83 -----ASHPRVVAIGETGLDRYH---NAHTIEEQKVVFLRHIEASRITG-IPLVIHSRSADDDMAAILQEEMKKGPFPFV  153 (262)
Q Consensus        83 -----~~~~~~~aIGEiGLD~~~---~~~~~e~Q~~vF~~ql~lA~e~~-~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i  153 (262)
                           ...+|+-=.|++|+.--+   +..+..-|+ =|..-++.|++.- .|--+---.                ...+-
T Consensus       327 i~~P~~Y~DRiFT~G~vG~pGv~Hi~~~~~vnGqK-DF~pvI~~Al~~pg~~~~~~~~~----------------it~GF  389 (567)
T TIGR01703       327 IIPPRSYKDRIFTTGVVGWPGVKHIENDKDVNGQK-DFSPVIEKALELPGFPKELEEGT----------------ITTGF  389 (567)
T ss_pred             EECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHCCCCCCHHHHCCE----------------EEEEC
T ss_conf             00777666840643734277762488696677777-82899999853884870331775----------------68703


Q ss_pred             CEECCCCHHHHHHHHCC---C---CEEECCCC-CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC-----------
Q ss_conf             11214640234432103---5---20202332-211333223333210566717983078667877768-----------
Q gi|254780215|r  154 IHCFSSSQKLADICLEL---G---GYISFTGM-ITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQ-----------  215 (262)
Q Consensus       154 ~H~FsG~~~~~~~~l~~---g---~y~S~~g~-i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r-----------  215 (262)
                      =|..==+..+|.+++++   |   -+|=++|. ...+++.=.-|+++.+|.|-|.+=-=     =..||           
T Consensus       390 ~h~~~L~~ktADK~velV~~GkIr~fF~vGGCDG~~~~r~YYT~~a~~~P~D~~ILT~a-----CGKYRfNk~dlGdIeG  464 (567)
T TIGR01703       390 GHHTILALKTADKIVELVKEGKIRHFFVVGGCDGRKPERNYYTEFAKKLPKDSVILTLA-----CGKYRFNKLDLGDIEG  464 (567)
T ss_pred             HHHHHHHHHHCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHH-----HHHHHHHHHHCCCCCC
T ss_conf             08889864521400105115880268987224788776540589997433003678533-----3212231121377787


Q ss_pred             -------CCCCCHHHHHHHHHHHHHHHCCC-HHHH
Q ss_conf             -------87588244999999999872899-8999
Q gi|254780215|r  216 -------GKRNEPAYVVNTAKALAKEKDVS-YEDL  242 (262)
Q Consensus       216 -------~~~n~P~~i~~~~~~iA~i~~~~-~eei  242 (262)
                             |+=|....+..+|.++|+..+++ +.++
T Consensus       465 iPRllD~GQCND~YSai~~AlkL~e~f~~~DvN~L  499 (567)
T TIGR01703       465 IPRLLDLGQCNDAYSAIVIALKLAEVFGCDDVNEL  499 (567)
T ss_pred             CHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             44341445650699999999999987288983633


No 210
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=57.37  E-value=16  Score=17.53  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=12.5

Q ss_pred             HHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf             998699899991679877899999998557233
Q gi|254780215|r   25 AHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSI   57 (262)
Q Consensus        25 a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i   57 (262)
                      ..+.|+.+++.-+.-..+.+...+++++||+.+
T Consensus        93 ll~~G~~rViiGt~av~~p~~v~~~~~~~g~ri  125 (241)
T COG0106          93 LLDAGVARVIIGTAAVKNPDLVKELCEEYGDRI  125 (241)
T ss_pred             HHHCCCCEEEEECCEECCHHHHHHHHHHCCCCE
T ss_conf             998799889980312169999999999859828


No 211
>PRK00957 methionine synthase; Provisional
Probab=57.19  E-value=16  Score=17.51  Aligned_cols=95  Identities=14%  Similarity=0.147  Sum_probs=58.9

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC---CCEEECCCCCC
Q ss_conf             102467899998766420442033000233357999853100036753311214640234432103---52020233221
Q gi|254780215|r  105 IEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL---GGYISFTGMIT  181 (262)
Q Consensus       105 ~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~---g~y~S~~g~i~  181 (262)
                      .+...+++..   +....+.++.+|.=+..+.+++.|.+.    ...++..=|+|+.+..+.+.+.   |-.+++| +++
T Consensus       177 ~~~~~~~i~~---~~~~~~~~~~~HiCg~y~~i~~~l~~~----~vd~~~lE~a~~~~~l~~l~~~~~~~k~i~lG-vid  248 (307)
T PRK00957        177 LEVAKKAIDI---IAKGLNIPVAMHVCGDVGNIFDDLLKF----NVDILDHEFAGNKENLEVLEEKDLIGKKIGFG-CVD  248 (307)
T ss_pred             HHHHHHHHHH---HHCCCCCEEEEEECCCHHHHHHHHHHC----CCCEEEEEECCCCCHHHHHHHHCCCCCEEEEE-EEE
T ss_conf             8999999999---741467459999667737778899858----99989997079944388887640589859986-785


Q ss_pred             HH---------HHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             13---------332233332105667179830786
Q gi|254780215|r  182 FP---------KYDALRAIARGIPMDRVLVETDSP  207 (262)
Q Consensus       182 ~~---------~~~~~~e~v~~iPldriLlETDsP  207 (262)
                      -.         =.++++++++.+|+|||.+-||+=
T Consensus       249 ~~s~~vE~~eeV~~rI~~a~~~v~~e~l~~~pDCG  283 (307)
T PRK00957        249 TKLKSVESVDEVKALIEKGIEILGNNNIIIDPDCG  283 (307)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCC
T ss_conf             78999999999999999999738876599858999


No 212
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=56.58  E-value=16  Score=17.44  Aligned_cols=144  Identities=19%  Similarity=0.242  Sum_probs=66.7

Q ss_pred             HHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHHCCC---------CCC---CCCCCCCCCCCCCC------------
Q ss_conf             9999999986998999916--798778999999985572---------332---11244544334467------------
Q gi|254780215|r   19 HDVIMRAHQANVLKMIAIA--IKVKDFVPLIKLCQDYPS---------SIF---CSVGTHPCHAHEEN------------   72 (262)
Q Consensus        19 ~~~i~~a~~~gv~~~i~~~--~~~~~~~~~~~l~~~~p~---------~i~---~a~GiHP~~~~~~~------------   72 (262)
                      .+.+.+|.++|+..+++++  ....|-.++++.+++..-         -+.   +.+|+-|-++....            
T Consensus        79 adai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~iiGPncpGiI~Pg~~kiGimp~~i~~~G~IGiVSrSGTLT  158 (293)
T COG0074          79 ADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTRLIGPNCPGIITPGECKIGIMPGNIYKPGNIGIVSRSGTLT  158 (293)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEECHHHHCCCCCEEEEECCCCHH
T ss_conf             99999998579957999959998889999999998669799879999637478533510523405788569996686639


Q ss_pred             HHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC--HHHHHHHHHHHHHHHHCCCC
Q ss_conf             8899885310013332100446775533221110246789999876642044203300--02333579998531000367
Q gi|254780215|r   73 EVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS--RSADDDMAAILQEEMKKGPF  150 (262)
Q Consensus        73 ~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~--r~a~~~~l~iL~~~~~~~~~  150 (262)
                      .+...++.. ....+-.+|| ||=|-. ..++.-.-.+.|++    -.+...-++|--  -.++.+..+.++++...   
T Consensus       159 yE~~~qlt~-~G~GqS~~IG-iGGDpi-~Gt~fid~L~~fe~----Dp~T~~ivmiGEiGG~aEe~AA~~i~~~~~~---  228 (293)
T COG0074         159 YEAVSQLTE-AGLGQSTAIG-IGGDPI-PGTSFIDALEMFEA----DPETEAIVMIGEIGGPAEEEAAEYIKANATR---  228 (293)
T ss_pred             HHHHHHHHH-CCCCEEEEEE-ECCCCC-CCCCHHHHHHHHHC----CCCCEEEEEEECCCCCHHHHHHHHHHHHCCC---
T ss_conf             999999976-3885589998-578876-88159999998645----8674079999267993899999999963468---


Q ss_pred             CCCCEECCCCHHHHHHHHCCCCEE
Q ss_conf             533112146402344321035202
Q gi|254780215|r  151 PFVIHCFSSSQKLADICLELGGYI  174 (262)
Q Consensus       151 ~~i~H~FsG~~~~~~~~l~~g~y~  174 (262)
                      |-++-++.|--.  .+-..+|+--
T Consensus       229 KPVVa~iaG~ta--p~gkrmGhaG  250 (293)
T COG0074         229 KPVVAYIAGRTA--PEGKRMGHAG  250 (293)
T ss_pred             CCEEEEEECCCC--CCCCHHHHHH
T ss_conf             986999843679--8233012103


No 213
>KOG2902 consensus
Probab=55.50  E-value=13  Score=18.03  Aligned_cols=229  Identities=17%  Similarity=0.135  Sum_probs=98.0

Q ss_pred             EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEE-C-----CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCHHH
Q ss_conf             6861388875652268999999998699899991-6-----7987789999999855723321124454433-4467889
Q gi|254780215|r    3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAI-A-----IKVKDFVPLIKLCQDYPSSIFCSVGTHPCHA-HEENEVL   75 (262)
Q Consensus         3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~-~-----~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~-~~~~~~~   75 (262)
                      -|-|.||-..   ..+..++-...+.|+....++ .     |+....-...+...+.|..-  ++ +---+. .+..++.
T Consensus        11 ~DmHvHlR~g---~ml~aVvP~~a~ggvs~AyvMPNL~PPiTt~da~i~YkK~i~kL~skt--tf-LMslYLs~~ttPe~   84 (344)
T KOG2902          11 DDMHVHLRDG---DMLHAVVPHSASGGVSRAYVMPNLKPPITTTDAAIIYKKFIMKLPSKT--TF-LMSLYLSDKTTPEE   84 (344)
T ss_pred             CCEEEEECCC---CEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC--EE-EEEEEECCCCCHHH
T ss_conf             5146886268---702442541146964689974788898312899999999998568656--16-78886168888899


Q ss_pred             HHHHHHHCCCCCCCEE----------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC----------HHHHH
Q ss_conf             9885310013332100----------446775533221110246789999876642044203300----------02333
Q gi|254780215|r   76 VDELVCLASHPRVVAI----------GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS----------RSADD  135 (262)
Q Consensus        76 ~~~l~~l~~~~~~~aI----------GEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~----------r~a~~  135 (262)
                         +.+..+..-+.||          .+-|.|         .--..|.--++--.|-|+|+.+|-          -+|+.
T Consensus        85 ---I~eAa~~~~irgVK~YPaGaTTNS~~GV~---------~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D~~Vf~aE~  152 (344)
T KOG2902          85 ---IREAAESGVIRGVKLYPAGATTNSQDGVT---------DLFGKFYPVFEAMQEQNMPLNVHGEVPPSIDGHVFDAEK  152 (344)
T ss_pred             ---HHHHHHHCCEEEEEECCCCCCCCCCCCCC---------CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEECCHH
T ss_conf             ---99998747454687404766445323665---------420234189999987196477427789866774104016


Q ss_pred             HHHHHHHH-HHHCCCCCCCC-EECCCCHHHHHHHHCCCCEEECCCCCCH-----------------H----HHH-HHHHH
Q ss_conf             57999853-10003675331-1214640234432103520202332211-----------------3----332-23333
Q gi|254780215|r  136 DMAAILQE-EMKKGPFPFVI-HCFSSSQKLADICLELGGYISFTGMITF-----------------P----KYD-ALRAI  191 (262)
Q Consensus       136 ~~l~iL~~-~~~~~~~~~i~-H~FsG~~~~~~~~l~~g~y~S~~g~i~~-----------------~----~~~-~~~e~  191 (262)
                      ..+..|.. +.+-+..++|+ ||-+   ..+-.+++--+--|+++.+|-                 -    |.. .-+.+
T Consensus       153 ~Flptll~LhqrfP~LKivlEHcTt---~dAv~~ve~a~~~sVaaTvTahHL~Lt~~dwqg~P~nfCkPVaK~e~dr~Al  229 (344)
T KOG2902         153 IFLPTLLQLHQRFPQLKIVLEHCTT---MDAVNFVESAKEGSVAATVTAHHLLLTRNDWQGQPHNFCKPVAKREIDREAL  229 (344)
T ss_pred             HHHHHHHHHHHHCCCCEEHHHHCCC---HHHHHHHHHHCCCCEEEEEEHHEEEEEHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf             6689999998757630247875261---8899999862377313574202068842543689740010000373218999


Q ss_pred             HHC--CCCCCEEEEECCCCCCCCCCCCCCCCHH-----HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHH
Q ss_conf             210--5667179830786678777688758824-----49999999998728--9989999999999999842
Q gi|254780215|r  192 ARG--IPMDRVLVETDSPYIVPVSCQGKRNEPA-----YVVNTAKALAKEKD--VSYEDLMEETTKNALKLFS  255 (262)
Q Consensus       192 v~~--iPldriLlETDsP~l~p~~~r~~~n~P~-----~i~~~~~~iA~i~~--~~~eei~~~~~~N~~~~f~  255 (262)
                      ++.  -.--+..+-|||   +|.|...+.|.+.     .-+..+.++|+..+  -.++.+..-+.-|-..||+
T Consensus       230 vkAatSg~pkFFfGsDS---APHprs~K~~~~~cAGvysqpfA~sy~A~VFde~gaLd~Lk~F~s~fG~~FY~  299 (344)
T KOG2902         230 VKAATSGSPKFFFGSDS---APHPRSRKESSCGCAGVYSQPFALSYYAKVFDEAGALDKLKAFTSFFGPDFYG  299 (344)
T ss_pred             HHHHHCCCCCEEECCCC---CCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCEEC
T ss_conf             99874499716636899---99842223468874334536106899999976504277776667652863002


No 214
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374    This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=55.21  E-value=13  Score=18.15  Aligned_cols=113  Identities=17%  Similarity=0.294  Sum_probs=60.2

Q ss_pred             HHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH----------------HHHCCCCCCCCCCCCCCCCCCC---C
Q ss_conf             56522689999999986998999916798778999999----------------9855723321124454433446---7
Q gi|254780215|r   12 PDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKL----------------CQDYPSSIFCSVGTHPCHAHEE---N   72 (262)
Q Consensus        12 ~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l----------------~~~~p~~i~~a~GiHP~~~~~~---~   72 (262)
                      .-|+++.-....+|.+.=-.-+++  |.|..+-++..|                |+. |=.|-. =||.  +++-.   .
T Consensus       308 LGFeP~Qk~~fL~Ai~kPqGMvLV--TGPTGSGKTVSLYTaLniLN~~~~NISTAED-PVEINL-pGIN--QVnvNpK~G  381 (577)
T TIGR02538       308 LGFEPDQKALFLEAIHKPQGMVLV--TGPTGSGKTVSLYTALNILNTEEVNISTAED-PVEINL-PGIN--QVNVNPKIG  381 (577)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCEEE--ECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CEEEEE-CCCC--EECCCCCCC
T ss_conf             068888999999997079972886--2665984168787631125776745011447-724640-7715--120466788


Q ss_pred             HHHHHHHHHHC-CCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE-EECHHHHHHHHHHHH
Q ss_conf             88998853100-13332100446775533221110246789999876642044203-300023335799985
Q gi|254780215|r   73 EVLVDELVCLA-SHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLV-IHSRSADDDMAAILQ  142 (262)
Q Consensus        73 ~~~~~~l~~l~-~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~-iH~r~a~~~~l~iL~  142 (262)
                      -.-...|+.++ ++|.|+.||||     ||.++.|.   ++    +-|.-=.+.++ +|+=+|-.-+.+++.
T Consensus       382 LTFAaALrSFLRQDPDIIMVGEI-----RDLETAEI---Ai----KAAqTGHLVlSTLHTNdAp~Tl~RL~N  441 (577)
T TIGR02538       382 LTFAAALRSFLRQDPDIIMVGEI-----RDLETAEI---AI----KAAQTGHLVLSTLHTNDAPETLARLVN  441 (577)
T ss_pred             CCHHHHHHHHCCCCCCEEEEECC-----CCHHHHHH---HH----HHHCCCCCEECCCCCCCHHHHHHHHHH
T ss_conf             78799998640689988987066-----64215899---99----984048721010001685899999975


No 215
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=54.97  E-value=17  Score=17.27  Aligned_cols=54  Identities=17%  Similarity=0.234  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHCC--CCCCCEECCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             889988531001--33321004467-755332211102467899998766420442033
Q gi|254780215|r   73 EVLVDELVCLAS--HPRVVAIGETG-LDRYHNAHTIEEQKVVFLRHIEASRITGIPLVI  128 (262)
Q Consensus        73 ~~~~~~l~~l~~--~~~~~aIGEiG-LD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~i  128 (262)
                      ..-+.++...+.  .|.+|-| |.| =|..|..++ +.-++-+++.++.+++.+-++++
T Consensus        57 ~~gL~Rl~~~L~~~~P~~Vii-~lGgND~LRg~~~-~~~~~NL~~ii~~~~~~g~~vlL  113 (191)
T PRK10528         57 QQGLARLPALLKQHQPRWVLV-ELGGNDGLRGFPP-QQTEQTLRQIIQDVKAANAQPLL  113 (191)
T ss_pred             HHHHHHHHHHHHCCCCCEEEE-EECCCCHHCCCCH-HHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             469999898874079998999-8468434308998-99999999999999988997899


No 216
>TIGR02075 pyrH_bact uridylate kinase; InterPro: IPR015963   Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes.   Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected.   This entry represents the bacterial proteins..
Probab=54.80  E-value=18  Score=17.25  Aligned_cols=113  Identities=15%  Similarity=0.196  Sum_probs=72.0

Q ss_pred             HHCCCCEEEEE-CCC-------HHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCC
Q ss_conf             98699899991-679-------877899999998557233211244-544334467889988531001333210044677
Q gi|254780215|r   26 HQANVLKMIAI-AIK-------VKDFVPLIKLCQDYPSSIFCSVGT-HPCHAHEENEVLVDELVCLASHPRVVAIGETGL   96 (262)
Q Consensus        26 ~~~gv~~~i~~-~~~-------~~~~~~~~~l~~~~p~~i~~a~Gi-HP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGL   96 (262)
                      ...|+...|.. +..       +..+.++.+.-++- ..|..+-|. +|++.    .+...-|+.-.-+..++=+|==|-
T Consensus        89 ~~~g~~~~V~Sfai~~~~~i~E~Y~~~~a~~~le~g-~vVIF~gGtGnPfFT----TDtaA~LRAiEi~aD~~Lkgt~GV  163 (236)
T TIGR02075        89 EKLGLKTRVLSFAISMPKQICESYIRRKAIKHLEKG-KVVIFSGGTGNPFFT----TDTAAALRAIEINADVILKGTNGV  163 (236)
T ss_pred             HHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHCC-CEEEEECCCCCCCCH----HHHHHHHHHHHHCCEEEEEECCCC
T ss_conf             736995689877753586413232278999985359-789995589869632----115888766643134799810488


Q ss_pred             CCCCCCCCCHH----------HHHHHHHHH--------HHHHHCCCCCEEECHHHHHHHHHHHHH
Q ss_conf             55332211102----------467899998--------766420442033000233357999853
Q gi|254780215|r   97 DRYHNAHTIEE----------QKVVFLRHI--------EASRITGIPLVIHSRSADDDMAAILQE  143 (262)
Q Consensus        97 D~~~~~~~~e~----------Q~~vF~~ql--------~lA~e~~~pv~iH~r~a~~~~l~iL~~  143 (262)
                      |--|+..|+.-          -.+++..+|        .||+|.|+|++|=.=+...-+.+++..
T Consensus       164 DGVY~~DPkknk~A~~y~~itY~~~L~~~L~VMD~TA~~La~dnnlpi~VFnI~~~g~l~~vi~g  228 (236)
T TIGR02075       164 DGVYTADPKKNKDAKKYDTITYNEVLKKNLKVMDLTAFSLAKDNNLPIVVFNIDEPGALKKVILG  228 (236)
T ss_pred             CCCCCCCCCCCCCCEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCC
T ss_conf             80235878859875231667989998614711358999999877897599666653016453227


No 217
>TIGR01748 rhaA L-rhamnose isomerase; InterPro: IPR009308   This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process.
Probab=53.64  E-value=8.3  Score=19.43  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=20.2

Q ss_pred             CCCEECCCCCCCC---------CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             3210044677553---------3221110246789999876642
Q gi|254780215|r   87 RVVAIGETGLDRY---------HNAHTIEEQKVVFLRHIEASRI  121 (262)
Q Consensus        87 ~~~aIGEiGLD~~---------~~~~~~e~Q~~vF~~ql~lA~e  121 (262)
                      ....+=.||||||         |.-.++..|+..+++-|+=...
T Consensus       313 dll~~v~IGLDFFDAsINRiAAWviGTRN~~KaLL~ALLePtad  356 (415)
T TIGR01748       313 DLLDKVAIGLDFFDASINRIAAWVIGTRNMKKALLKALLEPTAD  356 (415)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH
T ss_conf             65111120441211103121221003224589999986177267


No 218
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=52.76  E-value=19  Score=17.04  Aligned_cols=57  Identities=19%  Similarity=0.181  Sum_probs=35.2

Q ss_pred             HHHHHHHHHCCCCCCCCEECCCCH-HHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999853100036753311214640-23443210352-0202332211333223333210
Q gi|254780215|r  138 AAILQEEMKKGPFPFVIHCFSSSQ-KLADICLELGG-YISFTGMITFPKYDALRAIARG  194 (262)
Q Consensus       138 l~iL~~~~~~~~~~~i~H~FsG~~-~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~  194 (262)
                      +++|++....-..+.++|+=||.. +++++++..|. .+-|+..+..-=.+.+++.+..
T Consensus       191 ~d~L~~I~~~~~iPLVLHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~~~~l~~  249 (284)
T PRK12737        191 FDRLEEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVATELKIAFSDAVKKYFYE  249 (284)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf             99999999863999896689999999999999779589985858999999999999987


No 219
>KOG2310 consensus
Probab=52.75  E-value=18  Score=17.18  Aligned_cols=52  Identities=17%  Similarity=0.133  Sum_probs=33.4

Q ss_pred             EEEEECCCCCHH--------HHCCHHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHHC
Q ss_conf             168613888756--------52268999999998699899991679-------87789999999855
Q gi|254780215|r    2 LIDTHCHLLLPD--------FDEDRHDVIMRAHQANVLKMIAIAIK-------VKDFVPLIKLCQDY   53 (262)
Q Consensus         2 ~iD~H~HL~~~~--------~~~d~~~~i~~a~~~gv~~~i~~~~~-------~~~~~~~~~l~~~~   53 (262)
                      +|-+-|||...+        ....++++++-|.+..|..++.-|--       -....+++++-++|
T Consensus        17 LVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRry   83 (646)
T KOG2310          17 LVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRY   83 (646)
T ss_pred             EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9851575455667753466317779999998876377579853741235785188999999999997


No 220
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=52.39  E-value=19  Score=17.00  Aligned_cols=18  Identities=22%  Similarity=0.307  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999998425
Q gi|254780215|r  239 YEDLMEETTKNALKLFSK  256 (262)
Q Consensus       239 ~eei~~~~~~N~~~~f~~  256 (262)
                      -+++++.+|+++.+.||.
T Consensus       828 ~e~v~~lty~~A~~iYG~  845 (1444)
T COG2176         828 EEKVRDLTYEKAHKIYGD  845 (1444)
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             799999999999998679


No 221
>PTZ00065 60S ribosomal protein L14; Provisional
Probab=52.25  E-value=7  Score=19.92  Aligned_cols=42  Identities=29%  Similarity=0.296  Sum_probs=32.7

Q ss_pred             HHHHHHCCC--CEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf             344321035--2020233221133322333321056671798307866787
Q gi|254780215|r  163 LADICLELG--GYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVP  211 (262)
Q Consensus       163 ~~~~~l~~g--~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p  211 (262)
                      ..++|++-|  +|+++|+.     ++++.-++.-+.-+|.|+  |+|..+.
T Consensus         3 vF~rfVEvGRVv~i~~Gp~-----~GKL~~IVDIID~nRvLV--DGP~~tg   46 (130)
T PTZ00065          3 LFKRFVEPGRLCLITYGPD-----AGKLCFIVDIVTPTRVLV--DGAFITG   46 (130)
T ss_pred             CHHHCEECCEEEEEEECCC-----CCCEEEEEEEECCCEEEE--CCCCCCC
T ss_conf             0232034265999940788-----897899999861764674--0876678


No 222
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=52.16  E-value=19  Score=16.98  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHC-CCCCEEECHH-HHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCC-EEECCCCCCHHHHHHH
Q ss_conf             99998766420-4420330002-3335799985310003675331121464023443210352-0202332211333223
Q gi|254780215|r  112 FLRHIEASRIT-GIPLVIHSRS-ADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGG-YISFTGMITFPKYDAL  188 (262)
Q Consensus       112 F~~ql~lA~e~-~~pv~iH~r~-a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~-y~S~~g~i~~~~~~~~  188 (262)
                      |++.-++-.++ +.|+++|--. --.+.++.+..+....  +   -.+.-+.++.++.+.+|. .+-++..+..-=...+
T Consensus       214 ~~~L~~i~~~~~~~pLVLHGgS~vp~~~~~~~~~~GG~~--~---~~~G~~~e~i~~AI~~GV~KiNi~Tdl~~A~~~~v  288 (347)
T PRK13399        214 IDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGDM--K---ETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAI  288 (347)
T ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCC--C---CCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf             999999997378987687479788478889999707766--6---78899999999999819779985837789999999


Q ss_pred             HHHHHCCC
Q ss_conf             33321056
Q gi|254780215|r  189 RAIARGIP  196 (262)
Q Consensus       189 ~e~v~~iP  196 (262)
                      |+.+..=|
T Consensus       289 r~~l~~~p  296 (347)
T PRK13399        289 RKVLAEHP  296 (347)
T ss_pred             HHHHHHCC
T ss_conf             99998597


No 223
>PRK06740 histidinol-phosphatase; Validated
Probab=51.98  E-value=19  Score=16.96  Aligned_cols=81  Identities=20%  Similarity=0.124  Sum_probs=37.2

Q ss_pred             CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             91686138887565226899999999869989999167987789999999855723321124454433446788998853
Q gi|254780215|r    1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELV   80 (262)
Q Consensus         1 M~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~   80 (262)
                      |-||-|.||.--+++.+.-.-...+...    .........+-+.+....++....+  --|       .++++|++...
T Consensus         1 m~vd~h~hleegpys~~wl~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~r~--~~G-------~y~~~W~~~y~   67 (338)
T PRK06740          1 MKVDYHIHLEEGPYSIGWLAKINEALQH----YEPLKEEKHSMEWLVKTQERLQRRV--KEG-------PFTTKWIDLYL   67 (338)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHC----CCCCCCCHHHHHHHHHHHHHHHHHH--HCC-------CCCHHHHHHHH
T ss_conf             9401688614587326699988866531----2776520212999999999999998--559-------99899999999


Q ss_pred             HHCCCCCCCEECCCCCC
Q ss_conf             10013332100446775
Q gi|254780215|r   81 CLASHPRVVAIGETGLD   97 (262)
Q Consensus        81 ~l~~~~~~~aIGEiGLD   97 (262)
                      +.+   .=.+|-|+|+-
T Consensus        68 e~a---~~~Gi~evgi~   81 (338)
T PRK06740         68 EEA---VRKGIKEVGIV   81 (338)
T ss_pred             HHH---HHCCCCEEEEH
T ss_conf             999---97586246311


No 224
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=50.82  E-value=20  Score=16.84  Aligned_cols=45  Identities=16%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC-CCCCCCCCCCC
Q ss_conf             9999999986998999916798778999999985572-33211244544
Q gi|254780215|r   19 HDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPS-SIFCSVGTHPC   66 (262)
Q Consensus        19 ~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~-~i~~a~GiHP~   66 (262)
                      ++.++.|.+.|+ . +++ .++.+.++..+++++.+. .+...+-+.|.
T Consensus        93 ~~ei~~Ai~~gv-~-i~v-Ds~~El~~l~~~a~~~~~~~~~V~lRvnp~  138 (423)
T cd06842          93 DEFLWLAVRHGA-T-IAV-DSLDELDRLLALARGYTTGPARVLLRLSPF  138 (423)
T ss_pred             HHHHHHHHHCCC-E-EEE-CCHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             899999998599-8-997-899999999999876079962799986789


No 225
>PRK08082 consensus
Probab=50.60  E-value=20  Score=16.82  Aligned_cols=129  Identities=22%  Similarity=0.196  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHH--HHHCCCCCEEECHHH--HHHHHHHHHHHHHCCCCCCCCEECCCCH--H-------HHHHHHCCCCEE
Q ss_conf             46789999876--642044203300023--3357999853100036753311214640--2-------344321035202
Q gi|254780215|r  108 QKVVFLRHIEA--SRITGIPLVIHSRSA--DDDMAAILQEEMKKGPFPFVIHCFSSSQ--K-------LADICLELGGYI  174 (262)
Q Consensus       108 Q~~vF~~ql~l--A~e~~~pv~iH~r~a--~~~~l~iL~~~~~~~~~~~i~H~FsG~~--~-------~~~~~l~~g~y~  174 (262)
                      -+..|.-++..  |.+.++||.+-+-..  ..-+.+++....... ..-+   -+|..  +       .+.++-+++.|+
T Consensus       215 GKTa~alnia~~~a~~~~~~V~~fSlEM~~~~l~~R~la~~s~i~-~~~i---~~g~l~~~e~~~i~~a~~~l~~~~l~i  290 (453)
T PRK08082        215 GKTAFALNIAQNVATKTDENVAIFSLEMGADQLVMRMLCAEGNID-AQRL---RTGSLTSDDWGKLTMAMGSLSNAGIYI  290 (453)
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCC-HHHH---HCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf             578999999999998559948997313898999999997155888-6677---518999999999999999850697389


Q ss_pred             ECCCCCCHHH-HHHHHHHHHCCCCCCEEEEECCCCCCCCCCC-----CCCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             0233221133-3223333210566717983078667877768-----87588244999999999872899899999
Q gi|254780215|r  175 SFTGMITFPK-YDALRAIARGIPMDRVLVETDSPYIVPVSCQ-----GKRNEPAYVVNTAKALAKEKDVSYEDLME  244 (262)
Q Consensus       175 S~~g~i~~~~-~~~~~e~v~~iPldriLlETDsP~l~p~~~r-----~~~n~P~~i~~~~~~iA~i~~~~~eei~~  244 (262)
                      -=++.++-.. ..+.|.+.+.-+++-+++  |  |+--....     .+..+=+.|..-+..+|+-.++++--+++
T Consensus       291 dd~~~~~i~~i~~~~r~~~~~~~~~livI--D--YlqLi~~~~~~~~~r~~ev~~isr~LK~lAkel~ipvi~lsQ  362 (453)
T PRK08082        291 DDTPGIRVNEIRAKCRRLKQEQGLGMILI--D--YLQLIQGSGRSGENRQQEVSEISRTLKALARELEVPVIALSQ  362 (453)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCCEEEE--E--CHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             78999989999999999998669988999--5--077337789888789999999999999999996997999644


No 226
>pfam02630 SCO1-SenC SCO1/SenC. This family is involved in biogenesis of respiratory and photosynthetic systems. SCO1 is required for a post-translational step in the accumulation of subunits COXI and COXII of cytochrome c oxidase. SenC is required for optimal cytochrome c oxidase activity and maximal induction of genes encoding the light-harvesting and reaction centre complexes of R. capsulatus.
Probab=49.62  E-value=21  Score=16.72  Aligned_cols=52  Identities=13%  Similarity=0.067  Sum_probs=39.7

Q ss_pred             CCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC-CCEEEC
Q ss_conf             442033000233357999853100036753311214640234432103-520202
Q gi|254780215|r  123 GIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL-GGYISF  176 (262)
Q Consensus       123 ~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~-g~y~S~  176 (262)
                      +.-++.++++-+.|+-++|++|.....  .-++.++|+.+.++++.+. |.++.-
T Consensus        73 ~v~~v~iTvDPerDTpe~L~~Y~~~f~--~~~~~ltg~~~~i~~l~~~~~v~~~~  125 (159)
T pfam02630        73 DVQPVFISVDPERDTPKVLKEYLKNFH--PSFIGLTGTTDEIKSVAKKFKVFYSK  125 (159)
T ss_pred             CEEEEEEEECCCCCCHHHHHHHHHHCC--CCCCEEECCHHHHHHHHHHHCCEEEE
T ss_conf             559999996248899999999999729--98553489999999999971860896


No 227
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related    enzyme [Amino acid transport and metabolism]
Probab=49.52  E-value=16  Score=17.61  Aligned_cols=85  Identities=15%  Similarity=0.062  Sum_probs=52.9

Q ss_pred             HHHCCHHHHHHHHHHCCCCEEEEECCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCC------CCCCHHHHHHHHHHCCC
Q ss_conf             65226899999999869989999167987789-999999855723321124454433------44678899885310013
Q gi|254780215|r   13 DFDEDRHDVIMRAHQANVLKMIAIAIKVKDFV-PLIKLCQDYPSSIFCSVGTHPCHA------HEENEVLVDELVCLASH   85 (262)
Q Consensus        13 ~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~-~~~~l~~~~p~~i~~a~GiHP~~~------~~~~~~~~~~l~~l~~~   85 (262)
                      .....+.++=.++.+.+++.||++++....+. .... +...|+.++-..|+ |.+.      ...+.+..+.+.+++..
T Consensus        27 ~~~~~l~~lG~~~~e~rp~tIiV~SaHw~t~~~~~v~-~~e~~~~i~DfygF-P~~ly~~~Y~a~G~peLa~~i~~~l~~  104 (268)
T COG3384          27 AATRGLRELGRELPELRPDTIIVFSAHWETRGAYHVT-ASEHPETIHDFYGF-PDELYDVKYPAPGSPELAQRIVELLAK  104 (268)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEECEEEECCCEEEE-CCCCCCEEECCCCC-CHHHHHCCCCCCCCHHHHHHHHHHHCC
T ss_conf             7899999997765660898799983507862743687-06676612215889-889984337999998999999997412


Q ss_pred             CCCCEE-CCCCCCCC
Q ss_conf             332100-44677553
Q gi|254780215|r   86 PRVVAI-GETGLDRY   99 (262)
Q Consensus        86 ~~~~aI-GEiGLD~~   99 (262)
                      ..+.+- +.-|||+.
T Consensus       105 ~~v~a~~~~~gLDHG  119 (268)
T COG3384         105 LGVPADAPSWGLDHG  119 (268)
T ss_pred             CCCCCCCCCCCCCCC
T ss_conf             586666876687764


No 228
>pfam01297 SBP_bac_9 Periplasmic solute binding protein family. This family includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum.
Probab=48.98  E-value=22  Score=16.66  Aligned_cols=21  Identities=10%  Similarity=0.213  Sum_probs=11.4

Q ss_pred             HHHHHHCCCCEEEEECCCHHHHH
Q ss_conf             99999869989999167987789
Q gi|254780215|r   22 IMRAHQANVLKMIAIAIKVKDFV   44 (262)
Q Consensus        22 i~~a~~~gv~~~i~~~~~~~~~~   44 (262)
                      +.+..++.  .++.+|.+.+.|.
T Consensus        42 ~~~l~~AD--lii~~G~~~E~~l   62 (272)
T pfam01297        42 IKKLAKAD--LVVYNGAGLEPWL   62 (272)
T ss_pred             HHHHHCCC--EEEECCCCCHHHH
T ss_conf             99995699--9999298716789


No 229
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089   This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=48.82  E-value=22  Score=16.64  Aligned_cols=48  Identities=15%  Similarity=0.221  Sum_probs=34.6

Q ss_pred             CHHHHHHHHHHCCCCEEEEECCCHHH--------HHHHHHHHHHCCCCCCC--CCCCC
Q ss_conf             68999999998699899991679877--------89999999855723321--12445
Q gi|254780215|r   17 DRHDVIMRAHQANVLKMIAIAIKVKD--------FVPLIKLCQDYPSSIFC--SVGTH   64 (262)
Q Consensus        17 d~~~~i~~a~~~gv~~~i~~~~~~~~--------~~~~~~l~~~~p~~i~~--a~GiH   64 (262)
                      -..+++++|-++||+.+++++--..+        -+++.++|++|.-++..  |+||=
T Consensus        79 ~vp~v~eECG~KGVkg~vvI~AGF~E~G~eG~~LE~~l~~~a~kYg~Rl~GPNclG~~  136 (457)
T TIGR02717        79 LVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQKLVEIARKYGMRLLGPNCLGII  136 (457)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEE
T ss_conf             7999999986179518999714864531678999999999997678817767362258


No 230
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=48.82  E-value=15  Score=17.66  Aligned_cols=41  Identities=22%  Similarity=0.288  Sum_probs=22.2

Q ss_pred             CCCCCCCCC----CCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHH
Q ss_conf             467755332----21110246789999876642044203300023335
Q gi|254780215|r   93 ETGLDRYHN----AHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDD  136 (262)
Q Consensus        93 EiGLD~~~~----~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~  136 (262)
                      +-||.|.+-    ...-+.+.+-|.+.|   .+..+||.+|||.+.+-
T Consensus        55 ~~Gl~y~~iPv~~~~~t~~~v~~f~~~l---~~~~~Pvl~~CrSG~Rs   99 (110)
T pfam04273        55 AAGLAYRFIPVISGQITEADVEAFQRAL---AAAEGPVLAHCRSGTRA   99 (110)
T ss_pred             HCCCEEEEEECCCCCCCHHHHHHHHHHH---HHCCCCEEEECCCCHHH
T ss_conf             8399799964477898999999999999---85899899988998779


No 231
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=48.27  E-value=22  Score=16.58  Aligned_cols=60  Identities=20%  Similarity=0.174  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHCC-CCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             799985310003-675331121464-023443210352-020233221133322333321056
Q gi|254780215|r  137 MAAILQEEMKKG-PFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIP  196 (262)
Q Consensus       137 ~l~iL~~~~~~~-~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP  196 (262)
                      -+++|++....- ..+.++|.=||. .+++++.+.+|. .+-|+..+..-=...+|+.++..|
T Consensus       189 ~~d~l~~I~~~v~~vPLVLHGgSG~~~e~i~~ai~~Gi~KvNi~Tdl~~a~~~~~r~~l~~~~  251 (293)
T PRK07315        189 DLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQIAFANATRKFAREYE  251 (293)
T ss_pred             CHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf             899999998517998579758999999999999981955887461989999999999997156


No 232
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=47.75  E-value=23  Score=16.53  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             99999999987289989999999
Q gi|254780215|r  224 VVNTAKALAKEKDVSYEDLMEET  246 (262)
Q Consensus       224 i~~~~~~iA~i~~~~~eei~~~~  246 (262)
                      ....+..+|++.|.+..++-++.
T Consensus       249 ~k~A~~~~ak~~~~~k~~LY~~~  271 (275)
T COG0313         249 LKKAAKLAAKITGLNKKELYQLA  271 (275)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             88999999999796989999999


No 233
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species.  The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.98  E-value=23  Score=16.45  Aligned_cols=12  Identities=0%  Similarity=0.155  Sum_probs=5.0

Q ss_pred             EEEECCCHHHHH
Q ss_conf             999167987789
Q gi|254780215|r   33 MIAIAIKVKDFV   44 (262)
Q Consensus        33 ~i~~~~~~~~~~   44 (262)
                      ++-+|.++.+|+
T Consensus        28 lv~~g~dPH~ye   39 (276)
T cd01016          28 LMGPGVDPHLYK   39 (276)
T ss_pred             ECCCCCCCCCCC
T ss_conf             028898964687


No 234
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=46.84  E-value=23  Score=16.44  Aligned_cols=14  Identities=14%  Similarity=-0.090  Sum_probs=5.9

Q ss_pred             CCHHHHHHHHCCCC
Q ss_conf             64023443210352
Q gi|254780215|r  159 SSQKLADICLELGG  172 (262)
Q Consensus       159 G~~~~~~~~l~~g~  172 (262)
                      ++.+.++++.++|+
T Consensus       202 ~sl~Di~~L~~~gv  215 (234)
T PRK13587        202 RHQQDIQRLASLNV  215 (234)
T ss_pred             CCHHHHHHHHHCCC
T ss_conf             99999999998899


No 235
>TIGR01178 ade adenine deaminase; InterPro: IPR006679 Adenine deaminase (3.5.4.2 from EC) hydrolyses adenine to form hypoxanthine and ammonia. The enzyme is part of a large metal dependent hydrolase superfamily . The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source .; GO: 0000034 adenine deaminase activity, 0006146 adenine catabolic process.
Probab=46.50  E-value=24  Score=16.41  Aligned_cols=235  Identities=14%  Similarity=0.064  Sum_probs=131.4

Q ss_pred             EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCC------HHHHHHHHHHHHHCCCCCCC----CCCCCCCCCCCC
Q ss_conf             16861388875652268999999998699899991679------87789999999855723321----124454433446
Q gi|254780215|r    2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIK------VKDFVPLIKLCQDYPSSIFC----SVGTHPCHAHEE   71 (262)
Q Consensus         2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~~p~~i~~----a~GiHP~~~~~~   71 (262)
                      ++|.|.|+......  ...........|+..++.-...      .......++-++.-+..+|.    |+---+..-...
T Consensus        63 ~~d~~~~~~~~~~~--p~~~~~~~~~~g~~~~~~dp~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~g  140 (575)
T TIGR01178        63 FIDGHLHIESSLLT--PSEFAKLVLPHGTTTVVADPHEIANVLGEDGILFLLEDAKKTPLNFYFGLPSCVPALPGLETSG  140 (575)
T ss_pred             CCCCCEEECCCCCC--HHHHHHHHHCCCCEEEEECHHHHHHHCCHHHHHHHHHHHHHCHHEEEEECCCCCCCCCCCCCCC
T ss_conf             00110000000000--3333344322563024206045543100124677764210000000132131011322222244


Q ss_pred             CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             78899885310013332100446775533221110246789999876642044203300023335799985310003675
Q gi|254780215|r   72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFP  151 (262)
Q Consensus        72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~  151 (262)
                      .....+.+..+...+.+.+++|+- |    ....-....-....+..+..+++.+-=||.+.....+.....   .    
T Consensus       141 ~~~~~~~~~~~~~~~~~~gl~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~dg~~pgl~~~~~~~~~~---~----  208 (575)
T TIGR01178       141 AVLTAEDLEELLELDEVLGLAEVL-D----YPGVINADKELLEKLDLARKLNKLVDGHCPGLSGKLLNKYIS---A----  208 (575)
T ss_pred             CEECHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH---H----
T ss_conf             300166678776422344455654-1----012322458899988876651221123246665035666665---3----


Q ss_pred             CCCEE-CCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCC---CCCCEEEEECC-CCCCCCCCCCCCCCHHHHHH
Q ss_conf             33112-146402344321035202023322113332233332105---66717983078-66787776887588244999
Q gi|254780215|r  152 FVIHC-FSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGI---PMDRVLVETDS-PYIVPVSCQGKRNEPAYVVN  226 (262)
Q Consensus       152 ~i~H~-FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~i---PldriLlETDs-P~l~p~~~r~~~n~P~~i~~  226 (262)
                      ++.-+ -+-+.+....-+.+|.++-+.....-++...+.-++...   ....+++-||+ ....      ......++..
T Consensus       209 g~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgd~~~~------~~~~~g~~~~  282 (575)
T TIGR01178       209 GISSDHESTSLEEGLEKLRLGLKLLIREGSAAKNLLALLPLINEKSKKNSRPLLLCTDGDRHPW------DLLNEGYLDH  282 (575)
T ss_pred             HCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHH------HHHHCCHHHH
T ss_conf             1011101111566677774030013203411334566655555431047872588854765523------4431113789


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999872899899999999999998425
Q gi|254780215|r  227 TAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       227 ~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                      +++...+..+.+.-...+...-|..+.|+-
T Consensus       283 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~  312 (575)
T TIGR01178       283 LLRRAIEEGNVDPFLALQLATLNPAEYFGL  312 (575)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHCCHHHHCCC
T ss_conf             999887515865245332221131444056


No 236
>pfam04183 IucA_IucC IucA / IucC family. IucA and IucC catalyse discrete steps in biosynthesis of the siderophore aerobactin from N epsilon-acetyl-N epsilon-hydroxylysine and citrate. This family represents the N-terminal region. The C-terminal region appears to be related to iron transporter proteins.
Probab=46.06  E-value=7.6  Score=19.68  Aligned_cols=68  Identities=12%  Similarity=0.168  Sum_probs=40.2

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCCCCEEECHHH
Q ss_conf             32112445443344678899885310013332100446775533221110246789999876-642044203300023
Q gi|254780215|r   57 IFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEA-SRITGIPLVIHSRSA  133 (262)
Q Consensus        57 i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~l-A~e~~~pv~iH~r~a  133 (262)
                      =|..+=+|||.....-.   ..+..++....++-+|+.|..|+-..+-+-.    +-  ... ..-+++|+.|+.-++
T Consensus        86 ~y~liPvHPWQ~~~~l~---~~~~~~i~~g~li~Lg~~g~~~~pt~S~RTl----~~--~~~p~~~lKlsl~v~~Tss  154 (237)
T pfam04183        86 DYVLLPVHPWQWEHLLQ---PAFAALIANGLLIDLGEGGDAYLPTSSVRTL----YN--PDAPEPHLKLSLSVRNTNS  154 (237)
T ss_pred             CEEEEECCHHHHHHHHH---HHHHHHHHCCCEEECCCCCCEEEEECCEEEE----EC--CCCCCCEEEEEEEEEEECC
T ss_conf             65999117779988767---9999998689989889999606610360676----05--8899835996107760027


No 237
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=45.89  E-value=24  Score=16.35  Aligned_cols=50  Identities=28%  Similarity=0.402  Sum_probs=31.7

Q ss_pred             HHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE--EECHHHH
Q ss_conf             885310013332100446775533221110246789999876642044203--3000233
Q gi|254780215|r   77 DELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLV--IHSRSAD  134 (262)
Q Consensus        77 ~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~--iH~r~a~  134 (262)
                      ..++.......++.|-|||        ++|.--.-|.+-++.+-+-++|++  +|-|..+
T Consensus        92 ~al~rA~~~aDvIIIDEIG--------pMElks~~f~~~ve~vl~~~kpliatlHrrsr~  143 (179)
T COG1618          92 PALRRALEEADVIIIDEIG--------PMELKSKKFREAVEEVLKSGKPLIATLHRRSRH  143 (179)
T ss_pred             HHHHHHHHCCCEEEEECCC--------CHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             9999886349989994336--------330200889999999965899379999625677


No 238
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.54  E-value=24  Score=16.31  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=25.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHH
Q ss_conf             75882449999999998728998999-99999999
Q gi|254780215|r  217 KRNEPAYVVNTAKALAKEKDVSYEDL-MEETTKNA  250 (262)
Q Consensus       217 ~~n~P~~i~~~~~~iA~i~~~~~eei-~~~~~~N~  250 (262)
                      .++.|.++-+++..||..++.+.-.+ .+.+-+|-
T Consensus       376 ~pd~p~~agKsl~aIAd~~grdp~da~lD~Lardg  410 (579)
T COG3653         376 SPDKPELAGKSLKAIADERGRDPLDAFLDVLARDG  410 (579)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf             79970233135999998758888999999988516


No 239
>pfam02669 KdpC K+-transporting ATPase, c chain. This family consists of K+-transporting ATPase, c chain, KdpC. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilize the Kdp complex. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+-transporting subunit KdpA. The K+ transport system actively transports K+ ions via ATP hydrolysis.
Probab=44.91  E-value=20  Score=16.87  Aligned_cols=40  Identities=23%  Similarity=0.288  Sum_probs=31.1

Q ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf             82449999999998728998999999999999-98425687
Q gi|254780215|r  220 EPAYVVNTAKALAKEKDVSYEDLMEETTKNAL-KLFSKISE  259 (262)
Q Consensus       220 ~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~-~~f~~~~~  259 (262)
                      .|.+-..=+..+|+-+|++.+++.+.+.+|+. ++||-+.+
T Consensus       133 S~aaA~~Qv~RVA~argls~~~v~~Lv~~~t~~~~lG~~Ge  173 (188)
T pfam02669       133 SPAAAQAQFPRVAKARNISPQQLQSLITKHTEGRFLGIFGE  173 (188)
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             99999999999999849699999999999724876565799


No 240
>cd01145 TroA_c Periplasmic binding protein TroA_c.  These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=44.65  E-value=25  Score=16.22  Aligned_cols=26  Identities=19%  Similarity=0.204  Sum_probs=16.8

Q ss_pred             HHHHHHCCCCCCEEEEECCCCCCCCC
Q ss_conf             33332105667179830786678777
Q gi|254780215|r  188 LRAIARGIPMDRVLVETDSPYIVPVS  213 (262)
Q Consensus       188 ~~e~v~~iPldriLlETDsP~l~p~~  213 (262)
                      +.=+.+.+.++.+-+.+.+|-..|.|
T Consensus       176 f~Yfa~~ygl~~~~~~~~~p~~~Ps~  201 (203)
T cd01145         176 YQYLADWLGIEVVASLEPLPELPPTS  201 (203)
T ss_pred             HHHHHHHCCCEEEEEECCCCCCCCCC
T ss_conf             79999977997989875699989899


No 241
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.33  E-value=19  Score=17.05  Aligned_cols=44  Identities=20%  Similarity=0.199  Sum_probs=28.6

Q ss_pred             ECCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHH
Q ss_conf             044677553322----11102467899998766420442033000233357
Q gi|254780215|r   91 IGETGLDRYHNA----HTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDM  137 (262)
Q Consensus        91 IGEiGLD~~~~~----~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~  137 (262)
                      .+..||+|..-.    ..-+.+.+.|.+-   -.+..-||.-|||...+-+
T Consensus        54 a~~aGl~y~~iPV~~~~iT~~dV~~f~~A---l~eaegPVlayCrsGtRs~  101 (130)
T COG3453          54 AEAAGLTYTHIPVTGGGITEADVEAFQRA---LDEAEGPVLAYCRSGTRSL  101 (130)
T ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHHHH---HHHCCCCEEEEECCCCHHH
T ss_conf             99669825876347998799999999999---9970898786545770688


No 242
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin.  Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=42.26  E-value=27  Score=15.98  Aligned_cols=145  Identities=14%  Similarity=0.137  Sum_probs=69.2

Q ss_pred             CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCC--------CCC-----CCCCCCC--CCCHHHHHHHH
Q ss_conf             26899999999869989999167987789999999855723321--------124-----4544334--46788998853
Q gi|254780215|r   16 EDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFC--------SVG-----THPCHAH--EENEVLVDELV   80 (262)
Q Consensus        16 ~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~--------a~G-----iHP~~~~--~~~~~~~~~l~   80 (262)
                      +|+.++++-|..-||.  |++-.|...-..+  ..+.||+....        +.|     +.|..-.  +.-+..++++.
T Consensus        86 ~di~eiv~yA~~rgI~--VIPEID~PGH~~a--~~~~~pel~~~~~~~~~~~~~~~~~~~L~p~~~~ty~fl~~v~~E~~  161 (357)
T cd06563          86 EEIREIVAYAAERGIT--VIPEIDMPGHALA--ALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVA  161 (357)
T ss_pred             HHHHHHHHHHHHCCCE--EEECCCCCHHHHH--HHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9999999999976998--9762576116789--99859464088888765667886664115898789999999999999


Q ss_pred             HHCCCCCCCEEC--CCCCCCCCC-------------CCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHH
Q ss_conf             100133321004--467755332-------------21110246789999876642044203300023335799985310
Q gi|254780215|r   81 CLASHPRVVAIG--ETGLDRYHN-------------AHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEM  145 (262)
Q Consensus        81 ~l~~~~~~~aIG--EiGLD~~~~-------------~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~  145 (262)
                      .+... +.+=||  |+-.+-+..             ....+.|..++.+..++.++.|+-+++=     +|++   ..  
T Consensus       162 ~lFp~-~~~HlGGDEv~~~~W~~~p~i~~~~~~~~~~~~~~l~~~F~~~~~~~l~~~gk~~i~W-----~e~~---~~--  230 (357)
T cd06563         162 ELFPS-PYIHIGGDEVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKKMIGW-----DEIL---EG--  230 (357)
T ss_pred             HHCCC-CEEEECCCCCCCCHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE-----ECCC---CC--
T ss_conf             75897-6587557447744110387999999980999999999999999999999759926885-----1200---26--


Q ss_pred             HCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf             00367533112146402344321035202023
Q gi|254780215|r  146 KKGPFPFVIHCFSSSQKLADICLELGGYISFT  177 (262)
Q Consensus       146 ~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~  177 (262)
                       ..+...+++++.|. +.+.++++.|+.+=++
T Consensus       231 -~~~~~~ivq~W~~~-~~~~~~~~~G~~vI~s  260 (357)
T cd06563         231 -GLPPNATVMSWRGE-DGGIKAAKQGYDVIMS  260 (357)
T ss_pred             -CCCCCCEEEECCCC-CHHHHHHHHCCCEEEC
T ss_conf             -89997189955895-0799999819988965


No 243
>pfam07228 SpoIIE Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.
Probab=41.90  E-value=28  Score=15.95  Aligned_cols=60  Identities=20%  Similarity=0.120  Sum_probs=45.7

Q ss_pred             HHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             3210566717983078667877768875882449999999998728998999999999999984
Q gi|254780215|r  191 IARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF  254 (262)
Q Consensus       191 ~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f  254 (262)
                      .+.--|-|+|++=||+=.  .  .++...++.-.....+.+.+..+.+.+++.+.+.+...++=
T Consensus       117 ~~~l~~Gd~l~l~TDGl~--E--~~~~~~~~fg~~rl~~~l~~~~~~~~~~~~~~l~~~~~~~~  176 (192)
T pfam07228       117 EFPLEPGDTLLLYTDGLT--E--ARNPDGELFGLERLLALLAELSGLSPEELLDALLEDLLRFG  176 (192)
T ss_pred             EEECCCCCEEEEECCCCC--C--CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf             998289989999886600--1--55887661179999999987369999999999999999866


No 244
>TIGR00418 thrS threonyl-tRNA synthetase; InterPro: IPR002320   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Threonyl-tRNA synthetase (6.1.1.3 from EC) exists as a monomer and belongs to class IIa. The enzyme from Escherichia coli represses the translation of its own mRNA. The crystal structure of the complex between tRNA(Thr) and ThrRS show structural features that reveal novel strategies for providing specificity in tRNA selection. These include an amino-terminal domain containing a novel protein fold that makes minor groove contacts with the tRNA acceptor stem. The enzyme induces a large deformation of the anticodon loop, resulting in an interaction between two adjacent anticodon bases, which accounts for their prominent role in tRNA identity and translational regulation. A zinc ion found in the active site is implicated in amino acid recognition/discrimination . The zinc ion may act to ensure that only amino acids that possess a hydroxyl group attached to the beta-position are activated .; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006435 threonyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=41.79  E-value=17  Score=17.31  Aligned_cols=111  Identities=20%  Similarity=0.244  Sum_probs=57.5

Q ss_pred             HHCCCCCEEEC--HHHHHHHHHHHHHHHHC-C-------C------------CC-CCCEECCCCHHHHHHHHCCCCEEEC
Q ss_conf             42044203300--02333579998531000-3-------6------------75-3311214640234432103520202
Q gi|254780215|r  120 RITGIPLVIHS--RSADDDMAAILQEEMKK-G-------P------------FP-FVIHCFSSSQKLADICLELGGYISF  176 (262)
Q Consensus       120 ~e~~~pv~iH~--r~a~~~~l~iL~~~~~~-~-------~------------~~-~i~H~FsG~~~~~~~~l~~g~y~S~  176 (262)
                      .+...||+|||  .++.+.++-+|-|+... .       |            .. -..+-|  -.+..+++.+.|.++.+
T Consensus       452 ~~~~~Pv~IHra~~GS~ERfi~iL~E~~~G~fde~~PMLP~WLaP~QV~viPV~i~~h~~y--A~kv~~~L~~~giRv~~  529 (595)
T TIGR00418       452 NKEKRPVMIHRAILGSIERFIAILLEKYAGAFDERLPMLPLWLAPVQVVVIPVSIEKHLDY--AKKVAEKLKKEGIRVDV  529 (595)
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEEEEEECCHHHHHHH--HHHHHHHHHHCCCEEEE
T ss_conf             8700677898044005899999999875222114689885421762389970577889999--99999999857977988


Q ss_pred             CCCCCHHHH----HHHHH-HHHCCCCCCEEEEECCCCCCCCCCCCCCC--CHHHHHHHH-HHHHHHHCCCHHHHHHHHHH
Q ss_conf             332211333----22333-32105667179830786678777688758--824499999-99998728998999999999
Q gi|254780215|r  177 TGMITFPKY----DALRA-IARGIPMDRVLVETDSPYIVPVSCQGKRN--EPAYVVNTA-KALAKEKDVSYEDLMEETTK  248 (262)
Q Consensus       177 ~g~i~~~~~----~~~~e-~v~~iPldriLlETDsP~l~p~~~r~~~n--~P~~i~~~~-~~iA~i~~~~~eei~~~~~~  248 (262)
                      =     .++    +|+|+ .++.||           |+.-..-+.-.+  .-.+|..-- .+=.+.-.|+++|+.+.+..
T Consensus       530 D-----~r~e~lgkKIR~a~~~kiP-----------y~~V~Gd~E~e~~K~~v~vR~~~t~k~~~~~~m~~~E~~~~~~~  593 (595)
T TIGR00418       530 D-----DRNERLGKKIREAQKQKIP-----------YMLVVGDKEMEELKEAVNVRTRKTLKGQKLEKMSLDEFLEKVRK  593 (595)
T ss_pred             C-----CCCCCHHHHHHHHHCCCCC-----------EEEEECCHHHHCCCCEEEECCHHHHCCCCEEEECHHHHHHHHHH
T ss_conf             3-----8888013320220132206-----------79998730231389668522402104631014309999999973


No 245
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A;  Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=41.73  E-value=28  Score=15.93  Aligned_cols=146  Identities=14%  Similarity=0.185  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEE--CH-----HHHHHHHHHHHHHHHC---------CCCCCCCEECCCC--------HHHH
Q ss_conf             678999987664204420330--00-----2333579998531000---------3675331121464--------0234
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIH--SR-----SADDDMAAILQEEMKK---------GPFPFVIHCFSSS--------QKLA  164 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH--~r-----~a~~~~l~iL~~~~~~---------~~~~~i~H~FsG~--------~~~~  164 (262)
                      .++.....+...++++|=.||  |-     +.++-+++.|+.....         .-..+-||+|.|+        .+.+
T Consensus       208 r~Ii~~L~~a~e~LglPH~lHvH~nNLG~PGN~~ttl~T~~~~eg~~~~~r~q~~HltHvQFhsYgg~~~~~f~S~a~~i  287 (541)
T cd01304         208 REILKGLAEANEELGLPHSIHVHCNNLGVPGNYETTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGTSWRDFESGAERI  287 (541)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHH
T ss_conf             99999999999865999603201231799987266776444204544564455113424776632678887712259999


Q ss_pred             HHHHCCCCEEECC-CCCC------------------------------------------HHHHHHHHHHHHCC------
Q ss_conf             4321035202023-3221------------------------------------------13332233332105------
Q gi|254780215|r  165 DICLELGGYISFT-GMIT------------------------------------------FPKYDALRAIARGI------  195 (262)
Q Consensus       165 ~~~l~~g~y~S~~-g~i~------------------------------------------~~~~~~~~e~v~~i------  195 (262)
                      -+++..+-.+++- |.++                                          |++......+=-.+      
T Consensus       288 ae~vN~~~nvt~DvGqv~fg~T~tmt~D~~~~~~l~~~~~~KW~n~DiE~e~g~GvvP~~Y~~k~~V~alQWAIGLElfL  367 (541)
T cd01304         288 ADYVNANDHVTIDVGQVIFGETTTMTGDGPMQFDLHGLTGLKWVNCDIELETGSGVVPFIYSPKNPVNALQWAIGLELFL  367 (541)
T ss_pred             HHHHHCCCCEEEEECCCCCCCCEEEECCCHHHHHCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             99983699878752640457736885256766640237778636456032567755778864777504999986158875


Q ss_pred             ---CCCCEEEEECCCCCCCCC-------------CCCCCCCHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHH
Q ss_conf             ---667179830786678777-------------688758824499999999987----289989999999999999842
Q gi|254780215|r  196 ---PMDRVLVETDSPYIVPVS-------------CQGKRNEPAYVVNTAKALAKE----KDVSYEDLMEETTKNALKLFS  255 (262)
Q Consensus       196 ---PldriLlETDsP~l~p~~-------------~r~~~n~P~~i~~~~~~iA~i----~~~~~eei~~~~~~N~~~~f~  255 (262)
                         ...|+.+-||.|.-.|.-             +|.+.  -..+..-++.-+.+    |..++.|++..|+.+--|++|
T Consensus       368 l~~DPwrv~lTTDhPNggpFt~YP~li~lLMs~~~R~~~--l~~~~~~~~~~s~L~~idREysL~EiA~mTRA~pAk~LG  445 (541)
T cd01304         368 LIDDPWKVILTTDHPNGGPFTRYPRIIAWLMSKKFRAEE--IATLHKWAQDRSALPGIDREYSLYEIAIMTRAGPAKLLG  445 (541)
T ss_pred             CCCCCHHEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHH--HHHCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHCC
T ss_conf             458830146504699988552158899996398999999--986599898505655554201299999997032376609


Q ss_pred             H
Q ss_conf             5
Q gi|254780215|r  256 K  256 (262)
Q Consensus       256 ~  256 (262)
                      .
T Consensus       446 L  446 (541)
T cd01304         446 L  446 (541)
T ss_pred             C
T ss_conf             7


No 246
>PRK13118 consensus
Probab=41.60  E-value=28  Score=15.92  Aligned_cols=104  Identities=16%  Similarity=0.207  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHCCC-CCEEECH--HHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC--C--CEEECCCCCCH--
Q ss_conf             9999876642044-2033000--233357999853100036753311214640234432103--5--20202332211--
Q gi|254780215|r  112 FLRHIEASRITGI-PLVIHSR--SADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL--G--GYISFTGMITF--  182 (262)
Q Consensus       112 F~~ql~lA~e~~~-pv~iH~r--~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~--g--~y~S~~g~i~~--  182 (262)
                      ++++++-|++.+. -++|...  ...++..+.++++   +...+-+=+-+-+.+-+++..+.  |  ||+|..|+---  
T Consensus       111 ~e~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~---gl~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~  187 (269)
T PRK13118        111 YERFVAQAKEAGVDGLILVDLPPEEADELRAPAQAH---GLDFIRLTSPTTSDERLPRVLEHASGYLYYVSLAGVTGAAA  187 (269)
T ss_pred             HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC---CCCHHEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf             999999999859974645899978999999999975---98464036989878999999843788389985456678776


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             333223333210566717983078667877768875882449999
Q gi|254780215|r  183 PKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNT  227 (262)
Q Consensus       183 ~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~  227 (262)
                      .....+.+.++.+-     --||-|-.    ..-..++|..+..+
T Consensus       188 ~~~~~~~~~i~~ik-----~~t~~Pv~----vGFGIs~~e~~~~v  223 (269)
T PRK13118        188 LDTEHVEEAVARLR-----RHTDLPVV----VGFGIRDAESAAAI  223 (269)
T ss_pred             CCHHHHHHHHHHHH-----HHCCCCEE----EEECCCCHHHHHHH
T ss_conf             67198999999999-----62589817----87167999999999


No 247
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=41.53  E-value=28  Score=15.91  Aligned_cols=143  Identities=13%  Similarity=0.096  Sum_probs=71.2

Q ss_pred             HHCCCCEEEE-ECCCHHHHHHHHHHHHHCCCC---CCCCCC---CCC-CCCCCCC---HHHHHHHHHHCCCCCCCEECCC
Q ss_conf             9869989999-167987789999999855723---321124---454-4334467---8899885310013332100446
Q gi|254780215|r   26 HQANVLKMIA-IAIKVKDFVPLIKLCQDYPSS---IFCSVG---THP-CHAHEEN---EVLVDELVCLASHPRVVAIGET   94 (262)
Q Consensus        26 ~~~gv~~~i~-~~~~~~~~~~~~~l~~~~p~~---i~~a~G---iHP-~~~~~~~---~~~~~~l~~l~~~~~~~aIGEi   94 (262)
                      ..-|...++. ++.+++...+.++......+.   +-.+.|   +|- .++.+..   ......+..-..+.++-|+-|-
T Consensus        66 d~tGnp~~~qI~g~t~EA~~kYidfv~~~~d~PfliDSt~~~aR~aa~k~a~E~GladR~IYNSIn~s~~~eEieaL~es  145 (310)
T PRK00979         66 DITGNPYILQIFGETGEAIEKYIDFVSEIDDTPFLIDSTSGDARAAAAKYATEVGLADRAIYNSINMSIEEEEIEALKES  145 (310)
T ss_pred             HHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf             74589657776448989999998877404678757438867888999867665144677787506766798999999856


Q ss_pred             CCC------CCCCCCCCHHHHHHHHH--------HHHHHHHCCC--CCEEEC---H-----HHHHHHHHHHHHHHHCCCC
Q ss_conf             775------53322111024678999--------9876642044--203300---0-----2333579998531000367
Q gi|254780215|r   95 GLD------RYHNAHTIEEQKVVFLR--------HIEASRITGI--PLVIHS---R-----SADDDMAAILQEEMKKGPF  150 (262)
Q Consensus        95 GLD------~~~~~~~~e~Q~~vF~~--------ql~lA~e~~~--pv~iH~---r-----~a~~~~l~iL~~~~~~~~~  150 (262)
                      +++      |.....+.+.-.++++.        .|++|.+.+.  |++=-.   .     -+.+.++.+-..  ...|.
T Consensus       146 di~aaIiLaFnp~dpsv~gr~~~l~~g~~~~~~gll~~Ae~~GI~~~liD~avtplg~g~g~a~r~~~avK~~--~G~Pv  223 (310)
T PRK00979        146 DIDAAIVLAFNPMDPSVEGRLKMLEDGGGGQEKGLLPIAEECGITNPLIDVAVTPLGAGAGAAARAIFAVKAK--FGYPV  223 (310)
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHH--CCCCC
T ss_conf             9976899860799997234689987068732110799999759975353111367887637999999999998--19876


Q ss_pred             CCCCEECCCCHHHHHHHHCC
Q ss_conf             53311214640234432103
Q gi|254780215|r  151 PFVIHCFSSSQKLADICLEL  170 (262)
Q Consensus       151 ~~i~H~FsG~~~~~~~~l~~  170 (262)
                      ++-.|.-....++++++-+.
T Consensus       224 G~g~hN~~saW~wlk~~~~~  243 (310)
T PRK00979        224 GSGIHNAPSAWDWLKKFKKK  243 (310)
T ss_pred             CCCCCCCHHHHHHHHHHCCC
T ss_conf             76533575787999983425


No 248
>PRK09165 replicative DNA helicase; Provisional
Probab=41.47  E-value=28  Score=15.90  Aligned_cols=128  Identities=20%  Similarity=0.210  Sum_probs=63.9

Q ss_pred             HHHHHHHHHH--HHH--------------HCCCCCEEECHHH--HHHHHHHHHHHHHCCCCCCCCEECCCC--HHH----
Q ss_conf             4678999987--664--------------2044203300023--335799985310003675331121464--023----
Q gi|254780215|r  108 QKVVFLRHIE--ASR--------------ITGIPLVIHSRSA--DDDMAAILQEEMKKGPFPFVIHCFSSS--QKL----  163 (262)
Q Consensus       108 Q~~vF~~ql~--lA~--------------e~~~pv~iH~r~a--~~~~l~iL~~~~~~~~~~~i~H~FsG~--~~~----  163 (262)
                      -|..|.-.+.  .|+              ..+.||.+-+-..  ..-+.+++.........    +-.+|.  .+.    
T Consensus       217 GKTafaLniA~n~A~~~~~~~~~~~~~~~~~g~~V~~FSLEMs~~ql~~Rlls~~s~V~~~----~ir~g~l~~~e~~~i  292 (484)
T PRK09165        217 GKTALATNIAFNAAKAYLREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSS----KIRRGKISEEDFEKL  292 (484)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHH----HHHCCCCCHHHHHHH
T ss_conf             7789999999999987410222233211368984899947799999999999997268613----554489999999999


Q ss_pred             ---HHHHHCCCCEEECCCCCCHHH-HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC------CCCCHHHHHHHHHHHHH
Q ss_conf             ---443210352020233221133-32233332105667179830786678777688------75882449999999998
Q gi|254780215|r  164 ---ADICLELGGYISFTGMITFPK-YDALRAIARGIPMDRVLVETDSPYIVPVSCQG------KRNEPAYVVNTAKALAK  233 (262)
Q Consensus       164 ---~~~~l~~g~y~S~~g~i~~~~-~~~~~e~v~~iPldriLlETDsP~l~p~~~r~------~~n~P~~i~~~~~~iA~  233 (262)
                         +.++-++..|+-=++.++-.. ..+.|.+.+.-.++=+.+  |  |+--....+      +..+-+.|..-+..+|+
T Consensus       293 ~~a~~~l~~~~l~IdD~~~~ti~~Ira~~Rr~k~~~gl~livI--D--YLqLi~~~~~~~~~~R~~ev~~Isr~LK~lAk  368 (484)
T PRK09165        293 VDASQELQKLPLYIDDTPALSISALRARARRLKRQHGLDLLVI--D--YLQLIRGSSKRSQDNRVQEISEITQGLKALAK  368 (484)
T ss_pred             HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEE--E--CHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999719848977999879999999999998609988999--5--17635788888612199999999999999999


Q ss_pred             HHCCCHHHHH
Q ss_conf             7289989999
Q gi|254780215|r  234 EKDVSYEDLM  243 (262)
Q Consensus       234 i~~~~~eei~  243 (262)
                      -.++++--++
T Consensus       369 el~ipVi~Ls  378 (484)
T PRK09165        369 ELNIPVIALS  378 (484)
T ss_pred             HHCCCEEEEC
T ss_conf             9699699974


No 249
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=41.45  E-value=28  Score=15.90  Aligned_cols=59  Identities=15%  Similarity=0.114  Sum_probs=32.8

Q ss_pred             HHHHHHHHHCCCCCCCCEECCCCH-HHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             999853100036753311214640-23443210352-020233221133322333321056
Q gi|254780215|r  138 AAILQEEMKKGPFPFVIHCFSSSQ-KLADICLELGG-YISFTGMITFPKYDALRAIARGIP  196 (262)
Q Consensus       138 l~iL~~~~~~~~~~~i~H~FsG~~-~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP  196 (262)
                      ++.|++....-..+.++|.=||.. +++++++++|. .+-|+..+...=...+|+.+..-|
T Consensus       192 ~~~L~~I~~~~~vPLVLHGgSGi~~e~i~~ai~~Gi~KvNi~T~l~~a~~~~~r~~l~~~p  252 (286)
T PRK08610        192 FKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQIASAKAVRDVLNNDK  252 (286)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf             9999999852499979658999999999999985984899671889999999999998597


No 250
>pfam09124 Endonuc-dimeriz T4 recombination endonuclease VII, dimerization. Members of this family, which are predominantly found in Bacteriophage T4 recombination endonuclease VII, adopt a helical secondary structure, with three alpha helices oriented parallel to each other. They mediate dimerization of the protein, as well as binding to the DNA major groove.
Probab=41.08  E-value=18  Score=17.14  Aligned_cols=52  Identities=13%  Similarity=0.222  Sum_probs=28.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             454433446788998853100133321004467755332211102467899998766
Q gi|254780215|r   63 THPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEAS  119 (262)
Q Consensus        63 iHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA  119 (262)
                      |||.++.+-    ..++.++-..+-+.-.-+-|.+|.. ...+..=...|++|+.-|
T Consensus         1 iHpq~~~D~----~K~FSRl~~~eM~aem~s~Gf~Y~d-~d~K~~L~k~frKqf~k~   52 (54)
T pfam09124         1 IHPQYVPDK----TKRFSRLTKPEMIAEMDSRGFEYND-KDTKAELIKKFRKQFRKA   52 (54)
T ss_pred             CCCCCHHHH----HHHHHHCCHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHH
T ss_conf             986420489----9998870659999999982777774-007999999999999886


No 251
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate.  While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=40.96  E-value=29  Score=15.85  Aligned_cols=55  Identities=24%  Similarity=0.363  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHC
Q ss_conf             9999876642044203300023335799985310003675331121464023443210
Q gi|254780215|r  112 FLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLE  169 (262)
Q Consensus       112 F~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~  169 (262)
                      +...++.+...+-.+.+...+...+...+|++.......++|+||   +.+.+..+++
T Consensus       145 L~~ll~~~~~~~~~i~~~~~~~~~~~~~~Lk~ik~~~~~~iIld~---~~~~~~~vl~  199 (327)
T cd06382         145 LQELLQAFGISGITITVRQLDDDLDYRPLLKEIKNSGDNRIIIDC---SADILIELLK  199 (327)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHH
T ss_conf             999998641259758999779984078999999847873999989---8589999999


No 252
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=40.89  E-value=29  Score=15.85  Aligned_cols=105  Identities=10%  Similarity=0.064  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             8999999998699899991679-------877899999998-55723321124454433446788998853100133321
Q gi|254780215|r   18 RHDVIMRAHQANVLKMIAIAIK-------VKDFVPLIKLCQ-DYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVV   89 (262)
Q Consensus        18 ~~~~i~~a~~~gv~~~i~~~~~-------~~~~~~~~~l~~-~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~   89 (262)
                      +.+.++.....||..++..|++       .++..+..+.+. ..++.+-.-.|+- ..    +.+.++ +.+...+..+-
T Consensus        28 ~~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~g~~~vi~gvg-~~----t~~ai~-la~~a~~~Gad  101 (296)
T TIGR03249        28 YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG-GN----TSDAIE-IARLAEKAGAD  101 (296)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCC-HH----HHHHHH-HHHHHHHCCCC
T ss_conf             9999999997799989978305166658999999999999998389841512786-12----999999-99999875999


Q ss_pred             EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH
Q ss_conf             00446775533221110246789999876642044203300023
Q gi|254780215|r   90 AIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA  133 (262)
Q Consensus        90 aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a  133 (262)
                      || =+--.||...    .|..+++..-++|...++|+++..|..
T Consensus       102 ~v-~v~pPyy~~~----~~~~l~~~f~~ia~a~~~pi~lYn~~~  140 (296)
T TIGR03249       102 GY-LLLPPYLING----EQEGLYAHVEAVCESTDLGVIVYQRDN  140 (296)
T ss_pred             EE-EECCCCCCCC----CHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             78-9779988999----999999999999971599778730778


No 253
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012689    This entry represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway.; GO: 0018802 24-dihydroxyhept-2-ene-17-dioate aldolase activity, 0010124 phenylacetate catabolic process.
Probab=40.88  E-value=26  Score=16.13  Aligned_cols=142  Identities=16%  Similarity=0.201  Sum_probs=73.6

Q ss_pred             HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC-CC---------CCCCCCCCCCCCCCHHHHH--HHHHHCCCCCCC
Q ss_conf             99999869989999167987789999999855723-32---------1124454433446788998--853100133321
Q gi|254780215|r   22 IMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSS-IF---------CSVGTHPCHAHEENEVLVD--ELVCLASHPRVV   89 (262)
Q Consensus        22 i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~-i~---------~a~GiHP~~~~~~~~~~~~--~l~~l~~~~~~~   89 (262)
                      |+|-.+-|...++.+-..-.+--+..=-+-+||.. |+         .-++==|+|+++.+++..-  +.+....-.++-
T Consensus        77 IK~lLDIGAQTLLvPmi~~aeqA~~~V~A~rYPP~GiRGVGSALARASrwNrIp~Ylq~AdeeiClLlQVEtr~al~NL~  156 (249)
T TIGR02311        77 IKQLLDIGAQTLLVPMIETAEQAEAAVKATRYPPKGIRGVGSALARASRWNRIPDYLQQADEEICLLLQVETREALENLE  156 (249)
T ss_pred             EEHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHCCHHHHEEHHHHHHHHHHHHHHH
T ss_conf             10132234566431030377899999985069519513400787763221761257605213202323265799886215


Q ss_pred             EECCC-CCCC-CCCCCCCHHHHHHHHHHHHHHHHC---CCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHH
Q ss_conf             00446-7755-332211102467899998766420---442033000233357999853100036753311214640234
Q gi|254780215|r   90 AIGET-GLDR-YHNAHTIEEQKVVFLRHIEASRIT---GIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLA  164 (262)
Q Consensus        90 aIGEi-GLD~-~~~~~~~e~Q~~vF~~ql~lA~e~---~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~  164 (262)
                      .|-++ |-|- |-...+             ||..+   +.|=-=-.++|-++.++.++.+   ++..+|+-.   +.+++
T Consensus       157 ~Ia~VeGVDGVFiGPAD-------------LaasmGH~GnPsHPEV~~AI~~Ai~~i~a~---gKAaGIL~~---D~~~A  217 (249)
T TIGR02311       157 EIAAVEGVDGVFIGPAD-------------LAASMGHLGNPSHPEVQDAIDDAIERIKAA---GKAAGILTA---DEKLA  217 (249)
T ss_pred             HHHCCCCCCCEEECCHH-------------HHHHCCCCCCCCCHHHHHHHHHHHHHHHHC---CCCCCCCCC---CHHHH
T ss_conf             77501786624757124-------------434015688869615899999999999854---898654543---57899


Q ss_pred             HHHHCCCC-EEECCCCCCH
Q ss_conf             43210352-0202332211
Q gi|254780215|r  165 DICLELGG-YISFTGMITF  182 (262)
Q Consensus       165 ~~~l~~g~-y~S~~g~i~~  182 (262)
                      ++|+++|+ |+.++-.+|-
T Consensus       218 ~~Y~~~G~~FvAvGVDt~L  236 (249)
T TIGR02311       218 RQYLKLGALFVAVGVDTTL  236 (249)
T ss_pred             HHHHHCCCEEEEECCHHHH
T ss_conf             9999708968985213899


No 254
>PRK13120 consensus
Probab=40.78  E-value=29  Score=15.83  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=8.9

Q ss_pred             CCCHHHHHHHHCC--C--CEEECCC
Q ss_conf             4640234432103--5--2020233
Q gi|254780215|r  158 SSSQKLADICLEL--G--GYISFTG  178 (262)
Q Consensus       158 sG~~~~~~~~l~~--g--~y~S~~g  178 (262)
                      +.+.+-++++.+.  |  ||+|..|
T Consensus       161 tT~~eRi~~I~~~s~GFvY~VS~~G  185 (285)
T PRK13120        161 TSTEARIEAIGRVARGYVYYVSLKG  185 (285)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf             9989999999950898189986565


No 255
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=40.69  E-value=29  Score=15.82  Aligned_cols=97  Identities=20%  Similarity=0.298  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHHHHH-HHHHHHCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCC
Q ss_conf             89999999986998999916798778999-9999855723321124-454433446788998853100133321004467
Q gi|254780215|r   18 RHDVIMRAHQANVLKMIAIAIKVKDFVPL-IKLCQDYPSSIFCSVG-THPCHAHEENEVLVDELVCLASHPRVVAIGETG   95 (262)
Q Consensus        18 ~~~~i~~a~~~gv~~~i~~~~~~~~~~~~-~~l~~~~p~~i~~a~G-iHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiG   95 (262)
                      ...+++.+...+. ++...|.+.+..+++ ..+.++||+. . .+| .||.+-.+..++..+.+..  ..+.++-|| .|
T Consensus        35 ~~~ll~~~~~~~~-~v~llG~~~~~~~~~~~~l~~~yp~l-~-i~g~~~g~f~~~~~~~i~~~I~~--~~~div~vg-lG  108 (171)
T cd06533          35 MPALLELAAQKGL-RVFLLGAKPEVLEKAAERLRARYPGL-K-IVGYHHGYFGPEEEEEIIERINA--SGADILFVG-LG  108 (171)
T ss_pred             HHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCC-E-EEEEECCCCCHHHHHHHHHHHHH--CCCCEEEEE-CC
T ss_conf             9999999986497-49998089899999999999788993-7-99987899980668999999986--499999996-79


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH
Q ss_conf             75533221110246789999876642044203300023
Q gi|254780215|r   96 LDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA  133 (262)
Q Consensus        96 LD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a  133 (262)
                               ...|+.+..+   +...++.++++ |.+|
T Consensus       109 ---------~PkQE~~~~~---~~~~l~~~~~~-~vGg  133 (171)
T cd06533         109 ---------APKQELWIAR---HKDRLPVPVAI-GVGG  133 (171)
T ss_pred             ---------CCHHHHHHHH---HHHHCCCCEEE-ECCE
T ss_conf             ---------8288999999---99877998698-6451


No 256
>KOG1939 consensus
Probab=40.63  E-value=29  Score=15.82  Aligned_cols=29  Identities=17%  Similarity=0.139  Sum_probs=15.2

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             66787776887588244999999999872
Q gi|254780215|r  207 PYIVPVSCQGKRNEPAYVVNTAKALAKEK  235 (262)
Q Consensus       207 P~l~p~~~r~~~n~P~~i~~~~~~iA~i~  235 (262)
                      |..+|.-+....|+|.++..+-++..++.
T Consensus       400 P~~FPkIFGPnEdesld~e~tr~kF~eL~  428 (1247)
T KOG1939         400 PDFFPKIFGPNEDESLDVEITREKFEELT  428 (1247)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             03230014888666431688999999999


No 257
>pfam07611 DUF1574 Protein of unknown function (DUF1574). A family of hypothetical proteins in Leptospira interrogans.
Probab=40.13  E-value=29  Score=15.77  Aligned_cols=44  Identities=11%  Similarity=0.106  Sum_probs=29.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHH
Q ss_conf             32211102467899998766420442033000233357999853
Q gi|254780215|r  100 HNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQE  143 (262)
Q Consensus       100 ~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~  143 (262)
                      +....-+.|..++++.|.+|++.|.|+++=-.+..+...+.+++
T Consensus       242 ~~f~~s~~q~~F~~~~L~l~k~~~Ikv~liwP~v~~py~~~~~~  285 (345)
T pfam07611       242 SSFALSPMQYEFYQQFLKLAKENGIKVLLIWPSVYEPYEKRYKE  285 (345)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH
T ss_conf             55567856899999999999976996899983357679999876


No 258
>TIGR00247 TIGR00247 conserved hypothetical protein TIGR00247; InterPro: IPR003770    This family contains several aminodeoxychorismate lyase proteins. Aminodeoxychorismate lyase is a pyridoxal 5'-phosphate-dependent enzyme that converts 4-aminodeoxychorismate to pyruvate and p-aminobenzoate, a precursor of folic acid in bacteria .  .
Probab=39.43  E-value=12  Score=18.45  Aligned_cols=14  Identities=43%  Similarity=0.738  Sum_probs=9.9

Q ss_pred             EEEECCCC-------CCCCCC
Q ss_conf             98307866-------787776
Q gi|254780215|r  201 LVETDSPY-------IVPVSC  214 (262)
Q Consensus       201 LlETDsP~-------l~p~~~  214 (262)
                      =||||+||       ++|.|.
T Consensus       294 DLEi~sPYNTY~~~GlpPtPI  314 (373)
T TIGR00247       294 DLEIDSPYNTYINTGLPPTPI  314 (373)
T ss_pred             ECCCCCCCCCEECCCCCCCCC
T ss_conf             157688866522178888612


No 259
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=39.39  E-value=30  Score=15.69  Aligned_cols=104  Identities=9%  Similarity=0.101  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             8999999998699899991679-------87789999999855-723321124454433446788998853100133321
Q gi|254780215|r   18 RHDVIMRAHQANVLKMIAIAIK-------VKDFVPLIKLCQDY-PSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVV   89 (262)
Q Consensus        18 ~~~~i~~a~~~gv~~~i~~~~~-------~~~~~~~~~l~~~~-p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~   89 (262)
                      +.+.++...+.|+..+++.|++       .++..+..+.+.+. ++.+-.-+|+-..    ...+..+ +.+.+.+-.+-
T Consensus        20 ~~~~i~~l~~~Gv~gi~v~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~pvi~gv~~~----s~~~~~~-~a~~a~~~Gad   94 (281)
T cd00408          20 LRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGAN----STREAIE-LARHAEEAGAD   94 (281)
T ss_pred             HHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCC----CHHHHHH-HHHHHHHCCCC
T ss_conf             999999999769998996854524313899999999999999808985099957878----8999999-99999975999


Q ss_pred             EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
Q ss_conf             004467755332211102467899998766420442033000
Q gi|254780215|r   90 AIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR  131 (262)
Q Consensus        90 aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r  131 (262)
                      || =+.-.||..    -.|.++++..-++|...++|++++-.
T Consensus        95 ~i-~v~pP~y~~----~~~~~i~~~~~~i~~~~~~pi~iYn~  131 (281)
T cd00408          95 GV-LVVPPYYNK----PSQEGIVAHFKAVADASDLPVILYNI  131 (281)
T ss_pred             EE-EECCCCCCC----CCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             89-987997778----99999999999998555997799727


No 260
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=39.34  E-value=30  Score=15.69  Aligned_cols=37  Identities=11%  Similarity=0.124  Sum_probs=21.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             75882449999999998728998999999999999984
Q gi|254780215|r  217 KRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF  254 (262)
Q Consensus       217 ~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f  254 (262)
                      ..|+|..+..-++.+.++.. +..+...++.+...+.+
T Consensus       251 Gm~~~~~l~enLk~~~~~~p-~lte~e~~il~~v~~~~  287 (391)
T COG1453         251 GMNTPEQLEENLKIASELEP-SLTEEELQILEKVEEIY  287 (391)
T ss_pred             CCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHH
T ss_conf             88988898888999862487-66878999999999999


No 261
>PRK00915 2-isopropylmalate synthase; Validated
Probab=39.12  E-value=30  Score=15.67  Aligned_cols=27  Identities=19%  Similarity=0.154  Sum_probs=10.3

Q ss_pred             HHHCCCCEEEE--ECCCHHHHHHHHHHHH
Q ss_conf             99869989999--1679877899999998
Q gi|254780215|r   25 AHQANVLKMIA--IAIKVKDFVPLIKLCQ   51 (262)
Q Consensus        25 a~~~gv~~~i~--~~~~~~~~~~~~~l~~   51 (262)
                      ..+.||..+=.  ++.++.+++.+..+++
T Consensus        35 L~~~GV~~IE~G~P~~s~~d~e~~~~i~~   63 (511)
T PRK00915         35 LERLGVDVIEAGFPASSPGDFEAVKRIAR   63 (511)
T ss_pred             HHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             99769898998267789789999999986


No 262
>PRK13135 consensus
Probab=39.00  E-value=31  Score=15.65  Aligned_cols=65  Identities=15%  Similarity=0.135  Sum_probs=27.6

Q ss_pred             CEECCCCHHHHHHHHCC--C--CEEECCCCCCHH--HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             11214640234432103--5--202023322113--33223333210566717983078667877768875882449999
Q gi|254780215|r  154 IHCFSSSQKLADICLEL--G--GYISFTGMITFP--KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNT  227 (262)
Q Consensus       154 ~H~FsG~~~~~~~~l~~--g--~y~S~~g~i~~~--~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~  227 (262)
                      +=+-+.+.+-+++..+.  |  ||+|..|.---+  -...+.+.++.+-     --||-|-.    ..-..++|..+..+
T Consensus       152 lvsPtt~~~Ri~~i~~~s~GFiY~Vs~~GvTG~~~~~~~~~~~~i~~ik-----~~t~~Pv~----vGFGI~~~e~v~~i  222 (267)
T PRK13135        152 LLTPTSDESRIRTVARLGRGFVYYVSVTGVTGARSGVEATVGGNVAKIR-----EKITVPVV----VGFGISTPQQAADV  222 (267)
T ss_pred             EECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH-----HHCCCCEE----EEECCCCHHHHHHH
T ss_conf             8089895799999996189818998545666776444488999999998-----60689848----98167999999999


No 263
>pfam08981 consensus
Probab=38.81  E-value=31  Score=15.63  Aligned_cols=67  Identities=9%  Similarity=0.048  Sum_probs=42.5

Q ss_pred             HCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             22689999999986998999916798778999999985572332---11244544334467889988531
Q gi|254780215|r   15 DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIF---CSVGTHPCHAHEENEVLVDELVC   81 (262)
Q Consensus        15 ~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~---~a~GiHP~~~~~~~~~~~~~l~~   81 (262)
                      +.-++..++||.+.||.+++..+++-+.-...++..+.-.-++.   ...|+.--...+.+++..+.|++
T Consensus        11 ~~tl~~a~~ra~e~gI~~iVvASssG~TA~k~~e~~~~~~~~lvvVth~~GF~~pg~~e~~~e~~~~L~~   80 (181)
T pfam08981        11 EDTLELAAERAKELGIKHIVVASSSGETALKAAEALEGTNLNVVVVTHHAGFSEPGEQEMDPEVRKELEE   80 (181)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             9999999999997699769998078779999998713589559999464577899856389999999997


No 264
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=38.68  E-value=31  Score=15.62  Aligned_cols=24  Identities=21%  Similarity=0.207  Sum_probs=19.5

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             322333321056671798307866
Q gi|254780215|r  185 YDALRAIARGIPMDRVLVETDSPY  208 (262)
Q Consensus       185 ~~~~~e~v~~iPldriLlETDsP~  208 (262)
                      .++++++++.+|+|||.+-||+=+
T Consensus       289 ~~Ri~~a~~~v~~erl~~spDCGf  312 (339)
T PRK09121        289 ADTLRKALQFVDADKLYPCTNCGM  312 (339)
T ss_pred             HHHHHHHHHHCCHHHEEECCCCCC
T ss_conf             999999998389889898789899


No 265
>TIGR00300 TIGR00300 conserved hypothetical protein TIGR00300; InterPro: IPR005239    This family of conserved hypothetical proteins has no known function..
Probab=38.67  E-value=7.5  Score=19.71  Aligned_cols=115  Identities=19%  Similarity=0.254  Sum_probs=63.3

Q ss_pred             CCCCCCCCCCCCCCCCCC---------------------CCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHH----
Q ss_conf             572332112445443344---------------------6788998853100133321004467755332211102----
Q gi|254780215|r   53 YPSSIFCSVGTHPCHAHE---------------------ENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEE----  107 (262)
Q Consensus        53 ~p~~i~~a~GiHP~~~~~---------------------~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~----  107 (262)
                      .|+..|.+ -.||.++.-                     ........++++..-++++ ||+=|.=--....++|-    
T Consensus        94 lPddFY~t-Tnh~Tfvr~~geWv~Ve~~~MD~~IVv~~~~~~A~c~~ir~~~~GD~Vv-VG~~Gvrvvppe~prEG~~rk  171 (418)
T TIGR00300        94 LPDDFYVT-TNHPTFVRYGGEWVEVEGIKMDAAIVVTPEERRARCKPIREIKKGDRVV-VGEEGVRVVPPERPREGKTRK  171 (418)
T ss_pred             CCCCCEEC-CCEEEEEEECCEEEEECCEEECEEEEEECCCCEEEEEEHHHCCCCCEEE-ECCCCEEECCCCCCCCCCCCC
T ss_conf             67765330-4110379987378885582106689961599802798824223489899-877662741786688888534


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCC-C------CCCCCEECCCCHHHHHHHHCCCC
Q ss_conf             46789999876642044203300023335799985310003-6------75331121464023443210352
Q gi|254780215|r  108 QKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKG-P------FPFVIHCFSSSQKLADICLELGG  172 (262)
Q Consensus       108 Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~-~------~~~i~H~FsG~~~~~~~~l~~g~  172 (262)
                      ...+|+ ++.-...--+|+..=.++=..|+.++=++|.+.+ .      =++|+|-  |+...+-+++..||
T Consensus       172 en~~Fe-FM~~~vSSE~p~e~~i~~IA~E~~ei~~~yrk~GkG~I~vvaGPav~HT--g~~~~la~LiR~GY  240 (418)
T TIGR00300       172 ENGVFE-FMGSEVSSERPVETLIEKIAKEIYEIREKYRKTGKGKIVVVAGPAVIHT--GAAQALAKLIREGY  240 (418)
T ss_pred             CCCCCE-ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEC--CCHHHHHHHHHHHH
T ss_conf             244000-0157765443057999999999999999863158833899857804846--75899999976447


No 266
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=37.84  E-value=32  Score=15.54  Aligned_cols=84  Identities=17%  Similarity=0.134  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCE-----------ECCCCHHHHHHHHCCCCEEECC
Q ss_conf             8999987664204420330002--33357999853100036753311-----------2146402344321035202023
Q gi|254780215|r  111 VFLRHIEASRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIH-----------CFSSSQKLADICLELGGYISFT  177 (262)
Q Consensus       111 vF~~ql~lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H-----------~FsG~~~~~~~~l~~g~y~S~~  177 (262)
                      -.+.-++.|+++++-+++-.-+  ..++.-+. .   .-+..-+++|           |...+....+++.++|+-+|++
T Consensus        94 TI~~~~~~a~~~g~~v~vDli~~~~~~~ak~~-~---~lgv~~v~~H~g~D~q~~g~~~~~~~l~~~k~~~~~~~~vaVA  169 (220)
T PRK13305         94 TVEKGHAVAQSCGGEIQIELFGNWTLDDARDW-H---RIGVRQAIYHRGRDAQASGQQWGEADLARMKALSDIGLELSIT  169 (220)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH-H---HCCCCEEEEEECCCHHHCCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             99999999998099899984589987899999-9---8699889998333676518986310199999876069649998


Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             3221133322333321056671798
Q gi|254780215|r  178 GMITFPKYDALRAIARGIPMDRVLV  202 (262)
Q Consensus       178 g~i~~~~~~~~~e~v~~iPldriLl  202 (262)
                      |-++-+.   + +.++.+|.+-+.+
T Consensus       170 GGI~~~~---i-~~~~~~~~~ivIv  190 (220)
T PRK13305        170 GGITPAD---L-PLFKDIRVKAFIA  190 (220)
T ss_pred             CCCCHHH---H-HHHHCCCCCEEEE
T ss_conf             8878889---9-9997169989998


No 267
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=37.81  E-value=32  Score=15.53  Aligned_cols=104  Identities=13%  Similarity=0.146  Sum_probs=54.3

Q ss_pred             CHHHHHHHHHHCCCCEEEEECC-------CHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             6899999999869989999167-------98778999999985-572332112445443344678899885310013332
Q gi|254780215|r   17 DRHDVIMRAHQANVLKMIAIAI-------KVKDFVPLIKLCQD-YPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRV   88 (262)
Q Consensus        17 d~~~~i~~a~~~gv~~~i~~~~-------~~~~~~~~~~l~~~-~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~   88 (262)
                      .+...++...+.||..++..|+       +.++..++++.+.+ -++.+-.-+|+=-    ....+..+ +.+.+.+-.+
T Consensus        23 ~~~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~~Er~~v~~~~~~~~~~~~pvi~gv~~----~st~~~i~-~a~~A~~~Ga   97 (289)
T pfam00701        23 ALRKLIEFLINKGADGLFVGGTTGESFTLSTEEHEQLIEITVDEAKGRIPVIAGTGS----NSTREAIH-LAQLAEAAGA   97 (289)
T ss_pred             HHHHHHHHHHHCCCCEEEECEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC----CCHHHHHH-HHHHHHHCCC
T ss_conf             999999999977999999783640311388999999999999981998628637888----78999999-9999997499


Q ss_pred             CEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf             100446775533221110246789999876642044203300
Q gi|254780215|r   89 VAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS  130 (262)
Q Consensus        89 ~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~  130 (262)
                      -|| =+.-.||...    .|..+++..-++|...++|++++.
T Consensus        98 d~i-~v~pP~y~~~----~~~~i~~~~~~va~a~~lPi~iYn  134 (289)
T pfam00701        98 DGV-LAVTPYYNKP----SQEGLYQHFKAIAAATDLPVILYN  134 (289)
T ss_pred             CEE-EECCCCCCCC----CHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             978-8779988899----999999999999831599779971


No 268
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=37.76  E-value=32  Score=15.53  Aligned_cols=82  Identities=16%  Similarity=0.154  Sum_probs=48.0

Q ss_pred             CCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC-------CCEEECCCCCCHH-HHHHHHHHHHCC
Q ss_conf             42033000233357999853100036753311214640234432103-------5202023322113-332233332105
Q gi|254780215|r  124 IPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL-------GGYISFTGMITFP-KYDALRAIARGI  195 (262)
Q Consensus       124 ~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~-------g~y~S~~g~i~~~-~~~~~~e~v~~i  195 (262)
                      --+.+|.- +.....++++.....+...++.=+...+.+.++.+++.       ...=||+|..--+ --+|++++-+.+
T Consensus        86 d~It~H~E-~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~  164 (220)
T COG0036          86 DIITFHAE-ATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMI  164 (220)
T ss_pred             CEEEEEEC-CCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             98999712-77689999999997598577997899977899989865789999857799866314799999999999974


Q ss_pred             C-CCCEEEEECC
Q ss_conf             6-6717983078
Q gi|254780215|r  196 P-MDRVLVETDS  206 (262)
Q Consensus       196 P-ldriLlETDs  206 (262)
                      + ...+++|-|+
T Consensus       165 ~~~~~~~IeVDG  176 (220)
T COG0036         165 DERLDILIEVDG  176 (220)
T ss_pred             CCCCCEEEEEEC
T ss_conf             024775999968


No 269
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289   Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis .   This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=37.68  E-value=32  Score=15.52  Aligned_cols=184  Identities=17%  Similarity=0.172  Sum_probs=99.9

Q ss_pred             ECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCCC-----CCCC-CCCC--CCCC-
Q ss_conf             13888756522689999999986998999916------798778999999985572332-----1124-4544--3344-
Q gi|254780215|r    6 HCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYPSSIF-----CSVG-THPC--HAHE-   70 (262)
Q Consensus         6 H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p~~i~-----~a~G-iHP~--~~~~-   70 (262)
                      =-|||+=   ++.+. ..+|.++|..-++.=|      .+.....++.+++....+.|-     .++| +==.  =+.+ 
T Consensus        85 aLHLDHG---~s~E~-c~~AI~aGfsSVMIDgShlP~EEN~~~Tkkvve~Ah~~GDYvSVEaElG~~gG~ED~i~V~~~~  160 (339)
T TIGR01859        85 ALHLDHG---SSYES-CIKAIKAGFSSVMIDGSHLPFEENVALTKKVVEIAHAKGDYVSVEAELGTIGGIEDGIVVVEKE  160 (339)
T ss_pred             EEECCCC---CCHHH-HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECEECCEECCEEEEECC
T ss_conf             8646887---64899-9999964981672024268788888888999999985199799999843035276273787156


Q ss_pred             ---CCHHHHHHHHH-HCCCCCCCEECCC-CCCCCCCCCCCH------------HHHHHHHHHHHHHHHCC-CCCEEECHH
Q ss_conf             ---67889988531-0013332100446-775533221110------------24678999987664204-420330002
Q gi|254780215|r   71 ---ENEVLVDELVC-LASHPRVVAIGET-GLDRYHNAHTIE------------EQKVVFLRHIEASRITG-IPLVIHSRS  132 (262)
Q Consensus        71 ---~~~~~~~~l~~-l~~~~~~~aIGEi-GLD~~~~~~~~e------------~Q~~vF~~ql~lA~e~~-~pv~iH~r~  132 (262)
                         .+.++.+++-+ .--+-=..|||=+ |    +-..+.+            .+. =|++-=++.+..+ +|+|+|-=.
T Consensus       161 ~~ladp~Ea~~fV~eT~~D~LA~aIGt~HG----a~kykgeqCtrnaDGvLiWp~L-dF~~l~~I~~~~~G~PLVLHGaS  235 (339)
T TIGR01859       161 GELADPDEAEQFVKETGVDYLAAAIGTSHG----AFKYKGEQCTRNADGVLIWPGL-DFERLKEIKELTNGIPLVLHGAS  235 (339)
T ss_pred             CEECCHHHHHHHHHHCCCCEECCCCCCCCC----CCCCCCCCCCCCCCCEECCCCC-CHHHHHHHHHHHCCCCEEECCCC
T ss_conf             367587999999976387754010035023----5788866533046723548888-97899999875089766735765


Q ss_pred             H-HHHHHHHHHHHHHCC-CCCCCCEECCCCHHHHHHHHCCC-CEEECCC--CCCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             3-335799985310003-67533112146402344321035-2020233--2211333223333210566717983078
Q gi|254780215|r  133 A-DDDMAAILQEEMKKG-PFPFVIHCFSSSQKLADICLELG-GYISFTG--MITFPKYDALRAIARGIPMDRVLVETDS  206 (262)
Q Consensus       133 a-~~~~l~iL~~~~~~~-~~~~i~H~FsG~~~~~~~~l~~g-~y~S~~g--~i~~~~~~~~~e~v~~iPldriLlETDs  206 (262)
                      + =.++.+-+.++...- ..++|      +.+++++.+++| +.+=++.  .+.|.  ..+|++++.+--.-+-+|+-.
T Consensus       236 ~VP~e~v~~~~~~GG~L~ds~GI------P~e~ikkAi~lGiaKiNidTe~riAf~--~~~R~~l~dy~a~dl~l~k~~  306 (339)
T TIGR01859       236 SVPAEIVKEVEEYGGELKDSKGI------PEEQIKKAIKLGIAKINIDTECRIAFT--AAIRKVLEDYEAKDLELEKKD  306 (339)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCC------CHHHHHHHHHCCCCEEEECCHHHHHHH--HHHHHHHHHCCCCCCCCCCCC
T ss_conf             68588999999818767777768------678999999729141765816789999--999999841143554025887


No 270
>PRK06233 hypothetical protein; Provisional
Probab=37.64  E-value=32  Score=15.52  Aligned_cols=86  Identities=15%  Similarity=0.116  Sum_probs=43.9

Q ss_pred             CCCEEE-CHHHH----------HHHHHHHHHHHHCCCCCCCCEEC---CCCHHHHHHHHCC--------CCEEECCCCCC
Q ss_conf             420330-00233----------35799985310003675331121---4640234432103--------52020233221
Q gi|254780215|r  124 IPLVIH-SRSAD----------DDMAAILQEEMKKGPFPFVIHCF---SSSQKLADICLEL--------GGYISFTGMIT  181 (262)
Q Consensus       124 ~pv~iH-~r~a~----------~~~l~iL~~~~~~~~~~~i~H~F---sG~~~~~~~~l~~--------g~y~S~~g~i~  181 (262)
                      .-+.+| ||+-+          +.+.+.|.+. .  ...+.+=.=   .|+.+.+..+...        |+.=+=++.+-
T Consensus       237 ~~i~~HiC~Gn~~~~~~~~g~Y~~Ia~~l~~~-~--vd~~~lE~d~~R~g~~e~L~~~~~~~~~k~vvlGvId~~s~~vE  313 (372)
T PRK06233        237 LTVTTHICRGNFKSTYLFSGGYEPVAKYLGQL-N--YDGFFLEYDNDRSGSFEPLKKIWNQRDNVRIVLGLITSKFPELE  313 (372)
T ss_pred             CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC-C--CCEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCC
T ss_conf             58999876798876654446679999999868-9--99899971675556255899864268998899977848999999


Q ss_pred             HHH--HHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf             133--3223333210566717983078667877
Q gi|254780215|r  182 FPK--YDALRAIARGIPMDRVLVETDSPYIVPV  212 (262)
Q Consensus       182 ~~~--~~~~~e~v~~iPldriLlETDsP~l~p~  212 (262)
                      -+.  .+++.++++.+|++||.+-||+=+-+..
T Consensus       314 ~~e~V~~RI~~a~~~v~~e~l~~spdCGFas~~  346 (372)
T PRK06233        314 DPDEIIARIDEAAEYVPLSNLALSTQCGFASTE  346 (372)
T ss_pred             CHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCC
T ss_conf             999999999999971899888888888987534


No 271
>PRK13116 consensus
Probab=37.18  E-value=33  Score=15.47  Aligned_cols=21  Identities=29%  Similarity=0.184  Sum_probs=8.7

Q ss_pred             CCCHHHHHHHHCC--C--CEEECCC
Q ss_conf             4640234432103--5--2020233
Q gi|254780215|r  158 SSSQKLADICLEL--G--GYISFTG  178 (262)
Q Consensus       158 sG~~~~~~~~l~~--g--~y~S~~g  178 (262)
                      +.+.+-+++..+.  |  ||+|..|
T Consensus       157 tt~~~ri~~I~~~s~GFiY~VS~~G  181 (278)
T PRK13116        157 NASEKTLEGVSAASKGYIYAISRDG  181 (278)
T ss_pred             CCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9959999999971897399986352


No 272
>pfam08809 DUF1799 Phage related hypothetical protein (DUF1799). Members of this family are about 100 amino acids in length and are uncharacterized.
Probab=36.79  E-value=25  Score=16.19  Aligned_cols=41  Identities=29%  Similarity=0.353  Sum_probs=25.5

Q ss_pred             CCCCCCCCCCCCC-----C--HHHHHHHHHHCCCCCCCEECCCCCCCC
Q ss_conf             1124454433446-----7--889988531001333210044677553
Q gi|254780215|r   59 CSVGTHPCHAHEE-----N--EVLVDELVCLASHPRVVAIGETGLDRY   99 (262)
Q Consensus        59 ~a~GiHP~~~~~~-----~--~~~~~~l~~l~~~~~~~aIGEiGLD~~   99 (262)
                      .++|+.|....+.     .  ......+......-++-.-|=+||||.
T Consensus         2 a~~G~~~ed~~~~~~EVwpenw~av~lF~~~~TQWR~g~~G~~GLDY~   49 (83)
T pfam08809         2 AAFGLRPEDYDEPDVEVWPENWPAVDLFIAMSTQWRVGPAGATGLDYS   49 (83)
T ss_pred             CCCCCCHHHCCCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf             745788322699864357474699999999718376568986403099


No 273
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=36.66  E-value=33  Score=15.42  Aligned_cols=147  Identities=15%  Similarity=0.104  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-----------
Q ss_conf             899999999869989999167987789999999855723321124454433446788998853100133-----------
Q gi|254780215|r   18 RHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHP-----------   86 (262)
Q Consensus        18 ~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~-----------   86 (262)
                      ....+++..+.|-..++++-++-.+-.+..--+-+||..=.-.+|--+-.+..+. ...+.+.. .++.           
T Consensus        78 ~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~-~i~dyl~~-An~~~~~lvqiEtr~  155 (255)
T COG3836          78 DPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFG-RIADYLAQ-ANDEICLLVQIETRA  155 (255)
T ss_pred             CHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHH-CCCCEEEEEEECCHH
T ss_conf             8899999962163136640358999999999961489977345441556665238-77899985-360308887873488


Q ss_pred             ---CCCEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHH
Q ss_conf             ---32100446-77553322111024678999987664204420330002333579998531000367533112146402
Q gi|254780215|r   87 ---RVVAIGET-GLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQK  162 (262)
Q Consensus        87 ---~~~aIGEi-GLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~  162 (262)
                         .+-+|-.+ |+|-            +|.---+||..++-|-+-+.-+-...+-.++......++..++   ++.+.+
T Consensus       156 gl~nLDaIaaveGVDg------------vFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagi---l~~~p~  220 (255)
T COG3836         156 GLDNLDAIAAVEGVDG------------VFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGI---LAADPA  220 (255)
T ss_pred             HHHHHHHHHCCCCCCE------------EEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC---CCCCHH
T ss_conf             8977888871578776------------9877788798749999999879999999999999964864410---358999


Q ss_pred             HHHHHHCCCCEEEC-CCCCC
Q ss_conf             34432103520202-33221
Q gi|254780215|r  163 LADICLELGGYISF-TGMIT  181 (262)
Q Consensus       163 ~~~~~l~~g~y~S~-~g~i~  181 (262)
                      .+++|+++|+-|=. +...+
T Consensus       221 ~a~~yl~lGa~fvavG~D~~  240 (255)
T COG3836         221 DARRYLALGATFVAVGSDTG  240 (255)
T ss_pred             HHHHHHHHCCEEEEEECCHH
T ss_conf             99999983886999825079


No 274
>cd01017 AdcA Metal binding protein AcdA.  These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion.  The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains.  In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=35.76  E-value=34  Score=15.32  Aligned_cols=21  Identities=14%  Similarity=0.297  Sum_probs=10.8

Q ss_pred             HHHHHHCCCCEEEEECCCHHHHH
Q ss_conf             99999869989999167987789
Q gi|254780215|r   22 IMRAHQANVLKMIAIAIKVKDFV   44 (262)
Q Consensus        22 i~~a~~~gv~~~i~~~~~~~~~~   44 (262)
                      +.+..++.  -++.+|...+.|.
T Consensus        47 ~~~l~~Ad--li~~nG~~lE~~l   67 (282)
T cd01017          47 IARIADAD--VFVYNGLGMETWA   67 (282)
T ss_pred             HHHHHCCC--EEEEECCCCHHHH
T ss_conf             99996699--9999187836899


No 275
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=35.60  E-value=35  Score=15.31  Aligned_cols=56  Identities=25%  Similarity=0.258  Sum_probs=32.3

Q ss_pred             CCCCCEEEC--HHHHHHHHHHHHHHHHCC------CCCCCCEECC------CCHHHHHHHHCCCCEEECC
Q ss_conf             044203300--023335799985310003------6753311214------6402344321035202023
Q gi|254780215|r  122 TGIPLVIHS--RSADDDMAAILQEEMKKG------PFPFVIHCFS------SSQKLADICLELGGYISFT  177 (262)
Q Consensus       122 ~~~pv~iH~--r~a~~~~l~iL~~~~~~~------~~~~i~H~Fs------G~~~~~~~~l~~g~y~S~~  177 (262)
                      ...||+||.  .++.+.++-+|-++....      |.-+++=--+      --.+..+++.+.|+..-+-
T Consensus       506 ~~rPVmIHRAilGS~ERFigiLiEh~~G~fP~WLaP~Qv~Iipi~~~~~~~Ya~~v~~~L~~~giRv~vD  575 (639)
T PRK12444        506 KVRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVAPVQVKVIPVSNAVHVQYADEVADKLAQAGVRVERD  575 (639)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             2598899957877789999999997279898565720069995377027999999999999789889998


No 276
>PRK13112 consensus
Probab=35.42  E-value=35  Score=15.29  Aligned_cols=47  Identities=26%  Similarity=0.283  Sum_probs=21.6

Q ss_pred             CCCHHHHHHHHCC--C--CEEECCCCCCHH--HHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf             4640234432103--5--202023322113--33223333210566717983078667
Q gi|254780215|r  158 SSSQKLADICLEL--G--GYISFTGMITFP--KYDALRAIARGIPMDRVLVETDSPYI  209 (262)
Q Consensus       158 sG~~~~~~~~l~~--g--~y~S~~g~i~~~--~~~~~~e~v~~iPldriLlETDsP~l  209 (262)
                      +.+.+-+++..+.  |  ||+|..|+---+  -...+.+.++.+-.     -||.|-.
T Consensus       158 tt~~eRi~~i~~~s~GFiY~Vs~~GvTG~~~~~~~~~~~~i~~ik~-----~t~~Pv~  210 (279)
T PRK13112        158 TTDDKRLPKVLANTSGFVYYVSMTGITGSALADTSAVGEAVARIKR-----HTDLPVC  210 (279)
T ss_pred             CCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH-----HCCCCCE
T ss_conf             9989999999852788089983566667664564889999999997-----1789876


No 277
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467   This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=35.30  E-value=35  Score=15.28  Aligned_cols=168  Identities=17%  Similarity=0.236  Sum_probs=87.2

Q ss_pred             CHHHHHHHHHHCCC--CCCCEECCCCCCCCCCCCCCHHHHHHHHHHH----H-HHHHCCCCCE-EECHHHHHHHHHHHHH
Q ss_conf             78899885310013--3321004467755332211102467899998----7-6642044203-3000233357999853
Q gi|254780215|r   72 NEVLVDELVCLASH--PRVVAIGETGLDRYHNAHTIEEQKVVFLRHI----E-ASRITGIPLV-IHSRSADDDMAAILQE  143 (262)
Q Consensus        72 ~~~~~~~l~~l~~~--~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql----~-lA~e~~~pv~-iH~r~a~~~~l~iL~~  143 (262)
                      .+..++++..|..+  .+|| +  +|.|-.....++..+..-|..-|    + +---...-++ ||.-+..+++++++.+
T Consensus       242 ~e~~~~~v~~Lv~~gy~EvV-L--TGvnlg~Yg~d~~~~g~~L~~Ll~~i~~q~~g~~RiRlSS~~p~~~~~~l~~l~~s  318 (492)
T TIGR01579       242 LEKILEQVKELVAKGYKEVV-L--TGVNLGSYGDDLGENGSSLAKLLEQILKQIPGIERIRLSSIDPEDIDEELLELIKS  318 (492)
T ss_pred             HHHHHHHHHHHHHCCCEEEE-E--EEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHCHHHHHHHHC
T ss_conf             78999999999737755999-8--40014445688876676089999999864688346763257765504899999734


Q ss_pred             HHHCCCCCCCCEE--CCCCHHHHHHHHCC----------------CCEEECCCC--CCHHH-----HHHHHHHHHCCCCC
Q ss_conf             1000367533112--14640234432103----------------520202332--21133-----32233332105667
Q gi|254780215|r  144 EMKKGPFPFVIHC--FSSSQKLADICLEL----------------GGYISFTGM--ITFPK-----YDALRAIARGIPMD  198 (262)
Q Consensus       144 ~~~~~~~~~i~H~--FsG~~~~~~~~l~~----------------g~y~S~~g~--i~~~~-----~~~~~e~v~~iPld  198 (262)
                      ..+-.   -++|=  =|||-..+++.-..                .=-++||..  |-|+.     -++..++++.+|+-
T Consensus       319 ~~~l~---PHlHlsLQSGsd~vLkrM~R~Y~r~~~~~~v~~lr~~~p~~~~gtD~IVGFP~E~eedFq~t~~~~~~~~~~  395 (492)
T TIGR01579       319 EKKLC---PHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVQKLRSVRPDYAFGTDVIVGFPGESEEDFQETLRIVKEIEFS  395 (492)
T ss_pred             CCCCC---CCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf             76416---320000222773798424878876899999999985077630376037408889889999999998526602


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCHHHH-H---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             17983078667877768875882449-9---99999998728998999999999999984256
Q gi|254780215|r  199 RVLVETDSPYIVPVSCQGKRNEPAYV-V---NTAKALAKEKDVSYEDLMEETTKNALKLFSKI  257 (262)
Q Consensus       199 riLlETDsP~l~p~~~r~~~n~P~~i-~---~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~  257 (262)
                      +|-+         .||..++++|+.- +   .+=+.+++   .=+..|.+.-.+|..++..|+
T Consensus       396 ~~Hi---------FpyS~R~~T~A~~m~~rf~v~~~~~K---eR~~~L~~~~~~~~~~~~~k~  446 (492)
T TIGR01579       396 GLHI---------FPYSARPGTPASAMDDRFKVPETIKK---ERVKRLKELAEKVYQEYLKKY  446 (492)
T ss_pred             EEEE---------ECCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_conf             1335---------42688432812047874427611588---999999999888889999986


No 278
>pfam06187 DUF993 Protein of unknown function (DUF993). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=35.25  E-value=35  Score=15.27  Aligned_cols=64  Identities=23%  Similarity=0.401  Sum_probs=36.1

Q ss_pred             CCCCCCC--CCCCCHHHHHHHHHHHHHHHHCC-CCCEEECHH------HHHHHHHHHHHHHHCCCCCCCCEEC
Q ss_conf             6775533--22111024678999987664204-420330002------3335799985310003675331121
Q gi|254780215|r   94 TGLDRYH--NAHTIEEQKVVFLRHIEASRITG-IPLVIHSRS------ADDDMAAILQEEMKKGPFPFVIHCF  157 (262)
Q Consensus        94 iGLD~~~--~~~~~e~Q~~vF~~ql~lA~e~~-~pv~iH~r~------a~~~~l~iL~~~~~~~~~~~i~H~F  157 (262)
                      +|-|.-.  ...+.+.-+..+++|++.-++.+ ++|.+-||-      .-++-.++-.........++|+||-
T Consensus       114 ~GTDhL~p~~~~~ld~V~~AY~eQ~~~ve~~Gg~~IlMASRaLA~~A~~pdDY~~VY~~vL~q~~~PVILHWL  186 (382)
T pfam06187       114 AGTDHLAPSPAATLDDVIAAYEEQIEAVEAAGGRVILMASRALARVARSPDDYARVYGRVLAQVDEPVILHWL  186 (382)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             4767789878889999999999999999972996999730889987389787999999999863798897512


No 279
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=34.59  E-value=36  Score=15.20  Aligned_cols=133  Identities=13%  Similarity=0.087  Sum_probs=55.5

Q ss_pred             HHHHHHHHHCCCCEE-EEECCCHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCC
Q ss_conf             999999998699899-99167987-7899999998557233211244544334467889988531001333210044677
Q gi|254780215|r   19 HDVIMRAHQANVLKM-IAIAIKVK-DFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGL   96 (262)
Q Consensus        19 ~~~i~~a~~~gv~~~-i~~~~~~~-~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGL   96 (262)
                      .+.++++.+.|...+ +-+|.++. +..++..+.+..++.+...+-.|  ..  ++....-.+.+        ++-+.|+
T Consensus        90 ~~~~~~~~~~G~~~~Kikvg~~~~~d~~~v~~ir~~~g~~~~l~vDan--~~--~~~~~A~~~~~--------~l~~~~i  157 (265)
T cd03315          90 AEEARRALEAGFRTFKLKVGRDPARDVAVVAALREAVGDDAELRVDAN--RG--WTPKQAIRALR--------ALEDLGL  157 (265)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCC--CC--CCHHHHHHHHH--------HHCCCCC
T ss_conf             999999997599989997689859999999999987299967985787--78--89999999998--------6400585


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC-HHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHC
Q ss_conf             5533221110246789999876642044203300-023335799985310003675331121464023443210
Q gi|254780215|r   97 DRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS-RSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLE  169 (262)
Q Consensus        97 D~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~-r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~  169 (262)
                      .+....-+.+ +   ++..-+|+...+.||.... .....++.+.+....-.. .. +--+..|....+.++.+
T Consensus       158 ~w~EeP~~~~-d---~~~~~~L~~~~~ipIa~gEs~~~~~~~~~~i~~~~~d~-v~-~d~~~~GGit~~~kia~  225 (265)
T cd03315         158 DYVEQPLPAD-D---LEGRAALARATDTPIMADESAFTPHDAFRELALGAADA-VN-IKTAKTGGLTKAQRVLA  225 (265)
T ss_pred             EEEECCCCCC-C---HHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCHHH-EE-ECCCCCCHHHHHHHHHH
T ss_conf             4884789989-9---99999998519999990898799999999998726134-14-08776474999999999


No 280
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=34.26  E-value=36  Score=15.17  Aligned_cols=175  Identities=14%  Similarity=0.088  Sum_probs=72.1

Q ss_pred             HHCCHHHHHHHHHHCCCCEEEEECCC------HHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCC----------------
Q ss_conf             52268999999998699899991679------87789999999855723321124454-43344----------------
Q gi|254780215|r   14 FDEDRHDVIMRAHQANVLKMIAIAIK------VKDFVPLIKLCQDYPSSIFCSVGTHP-CHAHE----------------   70 (262)
Q Consensus        14 ~~~d~~~~i~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~~p~~i~~a~GiHP-~~~~~----------------   70 (262)
                      +..|..++++...+.|.+.+..+-.+      +..+.-..++++...-.+-..=||.- ..+..                
T Consensus        27 y~~dP~~~A~~~~~~Ga~~lhvvDLd~A~~g~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~~~~~l~~GadkVvigS~a~  106 (241)
T PRK00748         27 YGDDPLAQAQAWQDQGAEWLHLVDLDGAFAGRPVNLELIEAIVAAVDIPVQLGGGIRDLETVEAYLDAGVARVIIGTAAV  106 (241)
T ss_pred             ECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHH
T ss_conf             07899999999998799989999785420288207999999998679999982770749999999976977588647103


Q ss_pred             CCHHHHHHHHHHCCCCCCCEECCCCCCCCCCC---C--CCHHHHHHHHHHHHHHHHCCC-CCEEECHHHHH----HHHHH
Q ss_conf             67889988531001333210044677553322---1--110246789999876642044-20330002333----57999
Q gi|254780215|r   71 ENEVLVDELVCLASHPRVVAIGETGLDRYHNA---H--TIEEQKVVFLRHIEASRITGI-PLVIHSRSADD----DMAAI  140 (262)
Q Consensus        71 ~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~---~--~~e~Q~~vF~~ql~lA~e~~~-pv~iH~r~a~~----~~l~i  140 (262)
                      .+.+.+.++..... .+++ +   +||.....   .  .......+ ...++...+++. -+++.+.+..+    -=+++
T Consensus       107 ~n~~~i~~~~~~~g-~~iv-v---siD~k~~~v~~~gw~~~t~~~~-~~~i~~~~~~G~~eii~tdI~~DGt~~G~d~~l  180 (241)
T PRK00748        107 KNPELVKEACKKFP-GRIV-V---GLDARDGKVATRGWQEVSGVDL-EDLAKRFEDAGVAAIIYTDISRDGTLSGPNVEL  180 (241)
T ss_pred             HCHHHHHHHHHHCC-CCEE-E---EEEECCCEEECCCCCCCCCCCH-HHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHH
T ss_conf             39689999986235-5579-9---9982166540157554679748-999999985587569998870568547689999


Q ss_pred             HHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCC----CHHHHHHHHHHHHCC
Q ss_conf             8531000367533112146402344321035202023322----113332233332105
Q gi|254780215|r  141 LQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMI----TFPKYDALRAIARGI  195 (262)
Q Consensus       141 L~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i----~~~~~~~~~e~v~~i  195 (262)
                      +++.....+.+++.-.=-|+.+.++++.+++.. +++|++    .|...-.+.|+++.+
T Consensus       181 ~~~i~~~~~ipviasGGv~s~~Di~~L~~~~~~-gv~gviiG~Aly~g~i~l~eal~~~  238 (241)
T PRK00748        181 TRELAAATPIPVIASGGVSSLDDIRALKALGPE-GVEGVIVGKALYEGKFDLAEALACW  238 (241)
T ss_pred             HHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCC-CCCEEEEEHHHHCCCCCHHHHHHHH
T ss_conf             999998689989998899999999999860317-9248998789877998999999986


No 281
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=34.25  E-value=36  Score=15.17  Aligned_cols=121  Identities=19%  Similarity=0.254  Sum_probs=74.3

Q ss_pred             HHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEC------------
Q ss_conf             99869989999167987789999999855723321124454433446788998853100133321004------------
Q gi|254780215|r   25 AHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIG------------   92 (262)
Q Consensus        25 a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIG------------   92 (262)
                      |...|..-++.++.+..|.--++.+++...-.   -+ .-||..  +++..++++.++-. +.+.-||            
T Consensus        23 A~~~~~~~VIlvsDn~aD~~lA~~iaellNA~---Vl-ttpwg~--ynes~~~eI~~lnp-d~VLIIGGp~AVs~~yE~~   95 (337)
T COG2247          23 AQSQNTTVVILVSDNEADLLLALPIAELLNAP---VL-TTPWGI--YNESVLDEIIELNP-DLVLIIGGPIAVSPNYENA   95 (337)
T ss_pred             HHHCCCEEEEEECCHHHHHHHHHHHHHHHCCE---EE-ECCCCC--CCHHHHHHHHHHCC-CEEEEECCCCCCCHHHHHH
T ss_conf             44148159999566077788756799975890---57-267542--13999999996198-6599978987578658999


Q ss_pred             --CCCCCCCCC-----CCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf             --467755332-----2111024678999987664204420330002333579998531000367533112
Q gi|254780215|r   93 --ETGLDRYHN-----AHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHC  156 (262)
Q Consensus        93 --EiGLD~~~~-----~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~  156 (262)
                        -.|.-+-|-     .++-+.-..+|++|-.-|-+--+.+++|-.+-.+++++.|++    +..++++-.
T Consensus        96 Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwDy~~~~~e~~k~----~~~p~~~~n  162 (337)
T COG2247          96 LKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWDYADALMELMKE----GIVPVILKN  162 (337)
T ss_pred             HHHCCCEEEEECCCCHHHHHHHHHHHHHHHCHHHHCCEEEEEEECCCCHHHHHHHHHC----CCCEEEECC
T ss_conf             9857957999337626899999999997644233158179999660227778888753----753267416


No 282
>COG1647 Esterase/lipase [General function prediction only]
Probab=34.19  E-value=16  Score=17.46  Aligned_cols=15  Identities=0%  Similarity=0.299  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999984
Q gi|254780215|r  240 EDLMEETTKNALKLF  254 (262)
Q Consensus       240 eei~~~~~~N~~~~f  254 (262)
                      ++=.+++.++-.+|+
T Consensus       227 D~Erd~v~e~V~~FL  241 (243)
T COG1647         227 DKERDQVEEDVITFL  241 (243)
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             265899999999986


No 283
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=34.13  E-value=36  Score=15.15  Aligned_cols=149  Identities=13%  Similarity=0.113  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             8999999998699899991679-------877899999998557-23321124454433446788998853100133321
Q gi|254780215|r   18 RHDVIMRAHQANVLKMIAIAIK-------VKDFVPLIKLCQDYP-SSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVV   89 (262)
Q Consensus        18 ~~~~i~~a~~~gv~~~i~~~~~-------~~~~~~~~~l~~~~p-~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~   89 (262)
                      ..++++...+.|+..++.+|++       .++..++.+.+.+.- +.+-.-.|+=-    ..+.+..+ +.+.++     
T Consensus        27 ~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~----~~t~eai~-lak~a~-----   96 (299)
T COG0329          27 LRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS----NSTAEAIE-LAKHAE-----   96 (299)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCEEEECCC----CCHHHHHH-HHHHHH-----
T ss_conf             99999999984998899798665722169999999999999996897778986287----77999999-999999-----


Q ss_pred             EECCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH---HHHHHHHHHHHHHHHCCC--------------
Q ss_conf             0044677553---32211102467899998766420442033000---233357999853100036--------------
Q gi|254780215|r   90 AIGETGLDRY---HNAHTIEEQKVVFLRHIEASRITGIPLVIHSR---SADDDMAAILQEEMKKGP--------------  149 (262)
Q Consensus        90 aIGEiGLD~~---~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r---~a~~~~l~iL~~~~~~~~--------------  149 (262)
                         +.|-|-.   -....+..|..++...-.+|...++|++|=.+   -...-..+.+.+....+.              
T Consensus        97 ---~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~~gd~~~~  173 (299)
T COG0329          97 ---KLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSGDLDRL  173 (299)
T ss_pred             ---HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHH
T ss_conf             ---70999999848978898979999999999985189989997875248999999999982789889998478899999


Q ss_pred             ------CCC-CCEECCCCHHHHHHHHCCCC--EEECCCC
Q ss_conf             ------753-31121464023443210352--0202332
Q gi|254780215|r  150 ------FPF-VIHCFSSSQKLADICLELGG--YISFTGM  179 (262)
Q Consensus       150 ------~~~-i~H~FsG~~~~~~~~l~~g~--y~S~~g~  179 (262)
                            .+. =+-.|+|+-+++-..+.+|.  ++|..+.
T Consensus       174 ~~~~~~~~~~~f~v~~G~d~~~~~~~~~G~~G~is~~~N  212 (299)
T COG0329         174 EEIIAALGDRDFIVLSGDDELALPALLLGADGVISVTAN  212 (299)
T ss_pred             HHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEECCCH
T ss_conf             999986487662898266588889986779858841001


No 284
>TIGR03586 PseI pseudaminic acid synthase.
Probab=34.03  E-value=37  Score=15.14  Aligned_cols=64  Identities=16%  Similarity=0.139  Sum_probs=35.9

Q ss_pred             HHHHHHHHCCCCCEEECHHH-HHH---HHHHHHHHHHCCCCCCCCEECCCCH--------HHHHHHHC-CCCEEECCCC
Q ss_conf             99876642044203300023-335---7999853100036753311214640--------23443210-3520202332
Q gi|254780215|r  114 RHIEASRITGIPLVIHSRSA-DDD---MAAILQEEMKKGPFPFVIHCFSSSQ--------KLADICLE-LGGYISFTGM  179 (262)
Q Consensus       114 ~ql~lA~e~~~pv~iH~r~a-~~~---~l~iL~~~~~~~~~~~i~H~FsG~~--------~~~~~~l~-~g~y~S~~g~  179 (262)
                      ..|+-..+.++|++|=+-.+ ..|   +++++++..  ...-+++||.+.=+        ..++.+.+ .++.+|||.-
T Consensus       125 ~Li~~iak~~kpviiStG~s~~~EI~~av~~~~~~~--~~~i~llhC~s~YPt~~~~~nL~~I~~lk~~f~~~vG~SDH  201 (327)
T TIGR03586       125 PLIRYVAKTGKPIIMSTGIATLEEIEEAVEAAREAG--CKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSDH  201 (327)
T ss_pred             HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHC--CCCEEECCCCCCCCCCHHHCCHHHHHHHHHHCCCCEEECCC
T ss_conf             699998664886799688875456788888776502--55715652585899893774367899999974997583898


No 285
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557   These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=34.00  E-value=34  Score=15.37  Aligned_cols=46  Identities=24%  Similarity=0.177  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHCCCCCCCC-EECCCCHHHHHHHHCCCCEEECCCC
Q ss_conf             335799985310003675331-1214640234432103520202332
Q gi|254780215|r  134 DDDMAAILQEEMKKGPFPFVI-HCFSSSQKLADICLELGGYISFTGM  179 (262)
Q Consensus       134 ~~~~l~iL~~~~~~~~~~~i~-H~FsG~~~~~~~~l~~g~y~S~~g~  179 (262)
                      -+..++-|.++.+.+.+-.++ =|-||..++++++-++||-.+|++.
T Consensus       123 idrFldelp~~lk~gGrv~l~~SSl~~e~~~~~kl~~~GF~~ei~a~  169 (183)
T TIGR00537       123 IDRFLDELPEYLKEGGRVQLIQSSLSDEKDTLDKLDELGFKVEIVAE  169 (183)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf             88887656888705998999960668868899887615884799863


No 286
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088   Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d..
Probab=33.81  E-value=37  Score=15.12  Aligned_cols=154  Identities=15%  Similarity=0.202  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCC
Q ss_conf             89999999986998999916798778999999985572332112445443344678899885310013332100446775
Q gi|254780215|r   18 RHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLD   97 (262)
Q Consensus        18 ~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD   97 (262)
                      .+.++++|+-.||+++|-||....|.  +..+++.+|+ +-.++=    +....-|-.-+...+---.+|+   --|-.|
T Consensus       138 ~~LL~~~A~L~~V~~lIDVGGGIGDI--~AAl~~~FP~-L~~T~~----NLP~A~DLV~EN~A~KG~ADR~---~~~A~D  207 (306)
T TIGR02716       138 IELLLKRAKLDDVKKLIDVGGGIGDI--AAALLKAFPE-LDVTLL----NLPSALDLVRENVAEKGLADRI---RGVAVD  207 (306)
T ss_pred             HHHHHHHHHHHCCCEEEECCCCHHHH--HHHHHHHCCC-CCEEEE----CCCCHHHHHHHHHHHCCCCCCC---CCEEEE
T ss_conf             99999875163132543338887789--9999973775-232312----0540556776655414510046---631565


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHH--------HHHHHHHHHCCCCCCCCEECCCCHHHHHHHH-
Q ss_conf             5332211102467899998766420442033000233357--------9998531000367533112146402344321-
Q gi|254780215|r   98 RYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDM--------AAILQEEMKKGPFPFVIHCFSSSQKLADICL-  168 (262)
Q Consensus        98 ~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~--------l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l-  168 (262)
                      -|+..+|.. ---.|.+.|=-+++ ++ .-+=||+|++.+        +|..=    ..|.    |=   |.+.+.-++ 
T Consensus       208 ~Y~E~YP~~-DAVLF~RILY~~N~-Ql-~T~l~~KAyDAl~SGGR~LILDMVI----~DP~----~P---NyDYL~HY~~  273 (306)
T TIGR02716       208 IYKESYPEA-DAVLFSRILYSANE-QL-STILLKKAYDALRSGGRLLILDMVI----DDPE----NP---NYDYLSHYLL  273 (306)
T ss_pred             ECCCCCCCC-HHHHHHHHHHHHHH-HH-HHHHHHHHHHHCCCCCEEEEEEEEE----CCCC----CC---CHHHHHHHHH
T ss_conf             033875771-16567788764467-89-9999998875225788078654343----1856----77---7146899998


Q ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             035202023322113332233332105667
Q gi|254780215|r  169 ELGGYISFTGMITFPKYDALRAIARGIPMD  198 (262)
Q Consensus       169 ~~g~y~S~~g~i~~~~~~~~~e~v~~iPld  198 (262)
                      ..|.=||+=   -||..-...++++++.-.
T Consensus       274 ~~GM~FSVL---~FK~~A~Y~~~L~~~Gy~  300 (306)
T TIGR02716       274 AIGMGFSVL---EFKDQAVYKDLLRSLGYK  300 (306)
T ss_pred             HCCCCCHHH---HHHHCCCCHHHHHHCCCC
T ss_conf             716661012---110023007999855972


No 287
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=33.41  E-value=37  Score=15.08  Aligned_cols=50  Identities=10%  Similarity=-0.000  Sum_probs=26.6

Q ss_pred             HCCHHHHHHHHHHCCCCEEEEECCC-----HHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             2268999999998699899991679-----8778999999985572332112445
Q gi|254780215|r   15 DEDRHDVIMRAHQANVLKMIAIAIK-----VKDFVPLIKLCQDYPSSIFCSVGTH   64 (262)
Q Consensus        15 ~~d~~~~i~~a~~~gv~~~i~~~~~-----~~~~~~~~~l~~~~p~~i~~a~GiH   64 (262)
                      ..|.-+++++..+.|.+.+..+-.+     ...+.-+.++++...-.+-..=||+
T Consensus        28 ~~dP~~~a~~~~~~Ga~~lhvvDLdaa~g~~~N~~~I~~i~~~~~~piqvGGGIr   82 (231)
T PRK13586         28 LGDPLKIAEELYNEGYDSIHVVDLDAAEGKGDNEEYIKRICKIGFSWIQVGGGIR   82 (231)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             6899999999998799989999671568998439999999974598579856717


No 288
>PRK13113 consensus
Probab=33.13  E-value=38  Score=15.05  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=14.3

Q ss_pred             CEECCCCHHHHHHHHCC--C--CEEECCCC
Q ss_conf             11214640234432103--5--20202332
Q gi|254780215|r  154 IHCFSSSQKLADICLEL--G--GYISFTGM  179 (262)
Q Consensus       154 ~H~FsG~~~~~~~~l~~--g--~y~S~~g~  179 (262)
                      +=+-+-+.+-+++..+.  |  ||+|..|.
T Consensus       153 lvaPtt~~~Ri~~i~~~a~gFiY~Vs~~Gv  182 (263)
T PRK13113        153 LATPTTDDRRLPKVLQNTSGFVYYVSITGI  182 (263)
T ss_pred             EECCCCCHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             947999999999998338984899834556


No 289
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=33.11  E-value=38  Score=15.05  Aligned_cols=77  Identities=21%  Similarity=0.201  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHCCCCCEEECHHHHHH-HHHHHHHHHHCCCCCCCCEECCC-CHHHHHHHHCCCC-EEECCCCCCHHHHHHH
Q ss_conf             9999876642044203300023335-79998531000367533112146-4023443210352-0202332211333223
Q gi|254780215|r  112 FLRHIEASRITGIPLVIHSRSADDD-MAAILQEEMKKGPFPFVIHCFSS-SQKLADICLELGG-YISFTGMITFPKYDAL  188 (262)
Q Consensus       112 F~~ql~lA~e~~~pv~iH~r~a~~~-~l~iL~~~~~~~~~~~i~H~FsG-~~~~~~~~l~~g~-y~S~~g~i~~~~~~~~  188 (262)
                      |++.-++.+..+.|+++|--.+-.+ ..+.+..+      .+-+|.=+| +.+++++.+++|. .+-|+..+...=...+
T Consensus       193 ~~~L~~I~~~~~vPLVLHGgSgvpd~~~~~~~~~------gg~~~~~~G~~~e~i~~ai~~Gv~KiNI~Tdl~~a~~~~~  266 (307)
T PRK05835        193 FERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDA------GGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEV  266 (307)
T ss_pred             HHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHC------CCCCCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHH
T ss_conf             8999999841799879568987607888887502------6656788899999999999869769986877899999999


Q ss_pred             HHHHHC
Q ss_conf             333210
Q gi|254780215|r  189 RAIARG  194 (262)
Q Consensus       189 ~e~v~~  194 (262)
                      |+.+..
T Consensus       267 r~~~~e  272 (307)
T PRK05835        267 RKVANE  272 (307)
T ss_pred             HHHHHH
T ss_conf             999984


No 290
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=32.91  E-value=38  Score=15.02  Aligned_cols=104  Identities=11%  Similarity=0.107  Sum_probs=54.6

Q ss_pred             CHHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             68999999998699899991679-------87789999999855-72332112445443344678899885310013332
Q gi|254780215|r   17 DRHDVIMRAHQANVLKMIAIAIK-------VKDFVPLIKLCQDY-PSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRV   88 (262)
Q Consensus        17 d~~~~i~~a~~~gv~~~i~~~~~-------~~~~~~~~~l~~~~-p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~   88 (262)
                      .+...++...+.|+..++..|++       .++..+..+.+.+. ++.+...+|+=..    ...+..+ +.+.+.+..+
T Consensus        22 ~l~~~v~~l~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~----~t~~~i~-~a~~A~~~Ga   96 (284)
T cd00950          22 ALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSN----NTAEAIE-LTKRAEKAGA   96 (284)
T ss_pred             HHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCC----CHHHHHH-HHHHHHHCCC
T ss_conf             9999999999769998996843512424899999999999999718975077507877----8999999-9999998399


Q ss_pred             CEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf             100446775533221110246789999876642044203300
Q gi|254780215|r   89 VAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS  130 (262)
Q Consensus        89 ~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~  130 (262)
                      -|| =+--.||..    -.|..+++..-++|...++|++++.
T Consensus        97 dai-~v~pP~y~~----~s~~~l~~~~~~ia~a~~lPi~lYn  133 (284)
T cd00950          97 DAA-LVVTPYYNK----PSQEGLYAHFKAIAEATDLPVILYN  133 (284)
T ss_pred             CEE-EECCCCCCC----CCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             989-962665789----7999999999999755599779873


No 291
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism.  They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=32.69  E-value=38  Score=15.00  Aligned_cols=22  Identities=14%  Similarity=0.285  Sum_probs=13.7

Q ss_pred             HHHHHHCCCCEEEEECCCHHHHHH
Q ss_conf             999998699899991679877899
Q gi|254780215|r   22 IMRAHQANVLKMIAIAIKVKDFVP   45 (262)
Q Consensus        22 i~~a~~~gv~~~i~~~~~~~~~~~   45 (262)
                      +.+..++.  -++.+|...+.|..
T Consensus        47 ~~~l~~Ad--liv~~G~~lE~wl~   68 (286)
T cd01019          47 ARKLQEAD--LVVWIGPDLEAFLD   68 (286)
T ss_pred             HHHHHCCC--EEEEECCCCHHHHH
T ss_conf             99996699--99996997246899


No 292
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=32.64  E-value=38  Score=15.00  Aligned_cols=67  Identities=18%  Similarity=0.205  Sum_probs=42.8

Q ss_pred             HHHHHHHHHCCCCCCCEECCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHCCCCCEEEC-HHHHHHHHHHHHH
Q ss_conf             899885310013332100446775533221--110246789999876642044203300-0233357999853
Q gi|254780215|r   74 VLVDELVCLASHPRVVAIGETGLDRYHNAH--TIEEQKVVFLRHIEASRITGIPLVIHS-RSADDDMAAILQE  143 (262)
Q Consensus        74 ~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~--~~e~Q~~vF~~ql~lA~e~~~pv~iH~-r~a~~~~l~iL~~  143 (262)
                      ..++.+..++.+.++..| =|||.+.-+.+  +...+.+-|.+.  |...+++||.++. |-...+..+.|.+
T Consensus        40 ~~~~~l~~li~~~~~~~v-VVGlP~~m~g~~~~~~~~~~~f~~~--L~~r~~lpv~l~DERltTv~A~~~L~~  109 (141)
T COG0816          40 QDFNALLKLVKEYQVDTV-VVGLPLNMDGTEGPRAELARKFAER--LKKRFNLPVVLWDERLSTVEAERMLIE  109 (141)
T ss_pred             HHHHHHHHHHHHHCCCEE-EEECCCCCCCCCCHHHHHHHHHHHH--HHHHCCCCEEEECCCCCHHHHHHHHHH
T ss_conf             569999999998388879-9966768888713469999999999--987649878998186579999999997


No 293
>PRK00865 glutamate racemase; Provisional
Probab=32.58  E-value=39  Score=14.99  Aligned_cols=41  Identities=20%  Similarity=0.202  Sum_probs=25.5

Q ss_pred             HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             999999869989999167987789999999855723321124454
Q gi|254780215|r   21 VIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHP   65 (262)
Q Consensus        21 ~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP   65 (262)
                      +++...+.|++.+|+ +|+-.+..-.-.|.++|+   .|-+|+-|
T Consensus        56 i~~~l~~~~~k~iVi-ACNTasa~al~~lr~~~~---iPiiGi~P   96 (262)
T PRK00865         56 IVEFLLEQGVKMLVI-ACNTASAVALEDLRERLD---IPVVGIVP   96 (262)
T ss_pred             HHHHHHHCCCCEEEE-ECCCHHHHHHHHHHHHCC---CCEEEECH
T ss_conf             999999779989998-167378999999996479---97798448


No 294
>pfam04072 LCM Leucine carboxyl methyltransferase. Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence.
Probab=32.57  E-value=30  Score=15.72  Aligned_cols=11  Identities=55%  Similarity=0.987  Sum_probs=8.6

Q ss_pred             CCCEECCCCCCC
Q ss_conf             321004467755
Q gi|254780215|r   87 RVVAIGETGLDR   98 (262)
Q Consensus        87 ~~~aIGEiGLD~   98 (262)
                      ++|-+| +|||-
T Consensus        73 qVV~LG-aGlDT   83 (175)
T pfam04072        73 QVVILG-AGLDT   83 (175)
T ss_pred             EEEEEC-CCCCC
T ss_conf             899969-64335


No 295
>pfam05705 DUF829 Eukaryotic protein of unknown function (DUF829). This family consists of several uncharacterized eukaryotic proteins.
Probab=32.51  E-value=35  Score=15.25  Aligned_cols=18  Identities=17%  Similarity=0.076  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHCCCH
Q ss_conf             2449999999998728998
Q gi|254780215|r  221 PAYVVNTAKALAKEKDVSY  239 (262)
Q Consensus       221 P~~i~~~~~~iA~i~~~~~  239 (262)
                      +..+...++.. +-+|.++
T Consensus       193 ~~dvE~~~~~~-r~~G~~V  210 (239)
T pfam05705       193 WRDVERHIEEA-RQRGVSV  210 (239)
T ss_pred             HHHHHHHHHHH-HHCCCEE
T ss_conf             99999999999-9769968


No 296
>PRK05748 replicative DNA helicase; Provisional
Probab=32.50  E-value=39  Score=14.98  Aligned_cols=131  Identities=19%  Similarity=0.137  Sum_probs=65.6

Q ss_pred             HHHHHHHHHH--HHHHCCCCCEEECHHH--HHHHHHHHHHHHHCCCCCCCCEECCCCH--HH-------HHHHHCCCCEE
Q ss_conf             4678999987--6642044203300023--3357999853100036753311214640--23-------44321035202
Q gi|254780215|r  108 QKVVFLRHIE--ASRITGIPLVIHSRSA--DDDMAAILQEEMKKGPFPFVIHCFSSSQ--KL-------ADICLELGGYI  174 (262)
Q Consensus       108 Q~~vF~~ql~--lA~e~~~pv~iH~r~a--~~~~l~iL~~~~~~~~~~~i~H~FsG~~--~~-------~~~~l~~g~y~  174 (262)
                      -+..|.-++.  .|.+.++||.+.+-..  ..-+.+++...... +..   +-.+|..  +.       +.++-++..|+
T Consensus       215 GKTa~alnia~~~a~~~~~~v~~fSlEM~~~~l~~R~la~~s~v-~~~---~i~~g~l~~~~~~~~~~a~~~l~~~~l~i  290 (448)
T PRK05748        215 GKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGRI-DQQ---KLRTGQLTDEDWPKLTIAVGSLSDAPIYI  290 (448)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCC-CHH---HHHCCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf             76899999999999856980899817788889999999997467-777---77628999999999999999986598378


Q ss_pred             ECCCCCCHHH-HHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             0233221133-322333321056-67179830786678777688---7588244999999999872899899999
Q gi|254780215|r  175 SFTGMITFPK-YDALRAIARGIP-MDRVLVETDSPYIVPVSCQG---KRNEPAYVVNTAKALAKEKDVSYEDLME  244 (262)
Q Consensus       175 S~~g~i~~~~-~~~~~e~v~~iP-ldriLlETDsP~l~p~~~r~---~~n~P~~i~~~~~~iA~i~~~~~eei~~  244 (262)
                      .=++.++-.. ..+.|.+.+..+ ++-+.+  |-=-+...+-+.   +..+-+.|..-+..+|+-.++++--+++
T Consensus       291 ~d~~~~ti~~i~~~~r~~~~~~~~~~~vvi--DYlqli~~~~~~~~~r~~ev~~isr~lK~lAkel~ipvi~lsQ  363 (448)
T PRK05748        291 DDTPGIKVTEIRARCRRLAQEHGGLGLIVI--DYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPVIALSQ  363 (448)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCCCEEEE--EHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             558988689999999999997599889997--1686447778776439999999999999999996998899702


No 297
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I; InterPro: IPR001381   3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II.   The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine  is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=32.26  E-value=39  Score=14.96  Aligned_cols=90  Identities=17%  Similarity=0.256  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHCC-CCCCCEECCCCCCCCCCCCCCH--HHHHHHHHHHHHHH-HCCCCCEEECHHHH---------HH---
Q ss_conf             889988531001-3332100446775533221110--24678999987664-20442033000233---------35---
Q gi|254780215|r   73 EVLVDELVCLAS-HPRVVAIGETGLDRYHNAHTIE--EQKVVFLRHIEASR-ITGIPLVIHSRSAD---------DD---  136 (262)
Q Consensus        73 ~~~~~~l~~l~~-~~~~~aIGEiGLD~~~~~~~~e--~Q~~vF~~ql~lA~-e~~~pv~iH~r~a~---------~~---  136 (262)
                      ++.++.+....+ ...+|   |.=+|++.+.++..  .....+.+|+.... .-++|+++=+|..+         ++   
T Consensus        12 ~~~~~~a~~~~~~gaDiV---E~RvD~l~~~~~~~~I~~v~~~~~~~~~~~~~~~~P~ifT~R~~~eGG~~~~~~~~~~~   88 (239)
T TIGR01093        12 EEALAEAEKIKEVGADIV---ELRVDLLKDVSSNNDISSVDALIEQLSELLASVDKPLIFTIRTIKEGGKFPGDEEEYLE   88 (239)
T ss_pred             HHHHHHHHHHHHCCCCEE---EEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHH
T ss_conf             899999999862699678---74122441114435625799999999998436898758886230006788889899999


Q ss_pred             -----------------------HHHHHHHHHHCCCCCCCC--EECCCCHHHHH
Q ss_conf             -----------------------799985310003675331--12146402344
Q gi|254780215|r  137 -----------------------MAAILQEEMKKGPFPFVI--HCFSSSQKLAD  165 (262)
Q Consensus       137 -----------------------~l~iL~~~~~~~~~~~i~--H~FsG~~~~~~  165 (262)
                                             +++.+-+...++..|+|+  |-|.|++++.+
T Consensus        89 ~l~~~~~~~~~d~vDiEL~~~~~~~~~~~~~a~~~~~Kii~S~HdF~~TPs~~~  142 (239)
T TIGR01093        89 ELKEAIESGLADFVDIELFLPEDAVKELIREAKKGKTKIIMSNHDFQKTPSWEE  142 (239)
T ss_pred             HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
T ss_conf             999999606995587506783689999999997379579997057778888310


No 298
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.21  E-value=39  Score=14.95  Aligned_cols=123  Identities=13%  Similarity=0.099  Sum_probs=56.9

Q ss_pred             CHHHHHHHHHHCCCCEEEEEC---------CCHHHHHHHHHHHHHCCCCCCCCCCCCCCC------CCCCCH----HHHH
Q ss_conf             689999999986998999916---------798778999999985572332112445443------344678----8998
Q gi|254780215|r   17 DRHDVIMRAHQANVLKMIAIA---------IKVKDFVPLIKLCQDYPSSIFCSVGTHPCH------AHEENE----VLVD   77 (262)
Q Consensus        17 d~~~~i~~a~~~gv~~~i~~~---------~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~------~~~~~~----~~~~   77 (262)
                      .+++.++.+.+.|.+.+=..+         .+..+-.++.++++.|.-.|   +|++|..      ....++    ..++
T Consensus        14 ple~a~~~aa~lGydgVEi~~~~ph~~~~~~~~~~~~~ik~l~~~~gl~v---~~~~p~~~~~~~~l~~~d~~~R~~~i~   90 (276)
T PRK09856         14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPI---IGYTPETNGYPYNMMLGDEHMRRESLD   90 (276)
T ss_pred             CHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE---EEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99999999998499989973787654676546557999999999809868---995532137765336798789899999


Q ss_pred             HHHHHCC------CCCC-CEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH--------HHHHHHHHHH
Q ss_conf             8531001------3332-10044677553322111024678999987664204420330002--------3335799985
Q gi|254780215|r   78 ELVCLAS------HPRV-VAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS--------ADDDMAAILQ  142 (262)
Q Consensus        78 ~l~~l~~------~~~~-~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~--------a~~~~l~iL~  142 (262)
                      .++..+.      -+.+ +.-|-.|.+- .....++.=.+.|..-.+.|.+.+..+.|=.-.        .-++++++++
T Consensus        91 ~~k~~id~A~~Lga~~v~v~~~~~~~~~-~~~~~w~~~~e~l~~l~~~A~~~Gv~l~lE~l~~~e~~li~~~~~~~~~~~  169 (276)
T PRK09856         91 MIKLAMDMAKEMNAGYTLISAAHAGYLT-PPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALA  169 (276)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHCCHHHHHHHHH
T ss_conf             9999999999849984999368777888-979999999999999999999739989995176111420068999999998


Q ss_pred             H
Q ss_conf             3
Q gi|254780215|r  143 E  143 (262)
Q Consensus       143 ~  143 (262)
                      .
T Consensus       170 ~  170 (276)
T PRK09856        170 L  170 (276)
T ss_pred             H
T ss_conf             5


No 299
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family; InterPro: IPR010140   This entry represents the histidinol phosphate phosphatase, HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyses the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in Escherichia coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; not all members of this family may act on HisJ.; GO: 0004401 histidinol-phosphatase activity, 0000105 histidine biosynthetic process.
Probab=32.15  E-value=39  Score=14.94  Aligned_cols=150  Identities=14%  Similarity=0.110  Sum_probs=84.1

Q ss_pred             EEEECCC-CC-HHH-HCCHHHHHHHHHHCCCCEEEEECC-----------------------------CHH-HHHHHHHH
Q ss_conf             6861388-87-565-226899999999869989999167-----------------------------987-78999999
Q gi|254780215|r    3 IDTHCHL-LL-PDF-DEDRHDVIMRAHQANVLKMIAIAI-----------------------------KVK-DFVPLIKL   49 (262)
Q Consensus         3 iD~H~HL-~~-~~~-~~d~~~~i~~a~~~gv~~~i~~~~-----------------------------~~~-~~~~~~~l   49 (262)
                      +|.|.|= .+ ..- ...+++++++|.+.|...+..+--                             ++. -...+.+|
T Consensus         1 ~D~H~HsG~Fc~Hg~~~~~~~~v~~Ai~~gf~~~cfTEH~PR~~~~~~yp~~~~~~ke~~~~~~~~~~~l~~Y~~~i~~l   80 (301)
T TIGR01856         1 RDSHSHSGPFCAHGSTDTLEEVVQEAIQKGFEEICFTEHAPRIRLPRLYPEEDALDKEAVKVAAMLFESLPEYIEEIQRL   80 (301)
T ss_pred             CCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99730035778899988889999999970788122103686200773478767888746678999887689999999999


Q ss_pred             HHHCCC----CCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCC-CEECC-------CCCCCCC----------CCCCC
Q ss_conf             985572----33211244544334467889988531001--3332-10044-------6775533----------22111
Q gi|254780215|r   50 CQDYPS----SIFCSVGTHPCHAHEENEVLVDELVCLAS--HPRV-VAIGE-------TGLDRYH----------NAHTI  105 (262)
Q Consensus        50 ~~~~p~----~i~~a~GiHP~~~~~~~~~~~~~l~~l~~--~~~~-~aIGE-------iGLD~~~----------~~~~~  105 (262)
                      .++|.+    .+-.-+|+==-+.........+.+..-.+  -+-+ .-|=+       +-+||..          .....
T Consensus        81 k~~Y~~rPdv~~~i~iG~E~~~~~~~~~~~~~~f~~~~~p~~Df~i~SvH~~~g~~~y~~~Dfd~~~f~~~~~~~~~~~e  160 (301)
T TIGR01856        81 KKEYADRPDVKLKIRIGLEVDYIDPEFEEFIKDFLDEYNPILDFVIGSVHFLRGDSSYIPIDFDEEEFKEELVSFEKSLE  160 (301)
T ss_pred             HHHHCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEECCCCHHHHHHHHHHHHCCHH
T ss_conf             99848898504678852245201344799999998751882024778877774875401036886788887877724678


Q ss_pred             HHHHHHHHHHHHHHHH---CCCCCEE-ECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHH
Q ss_conf             0246789999876642---0442033-00023335799985310003675331121464023
Q gi|254780215|r  106 EEQKVVFLRHIEASRI---TGIPLVI-HSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKL  163 (262)
Q Consensus       106 e~Q~~vF~~ql~lA~e---~~~pv~i-H~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~  163 (262)
                      ..|++.|+.|.+....   +.+|.+| |        +++.+++.+   ...++|-=+|+-+.
T Consensus       161 ~~~~~Y~~~~~~~~~~~LGl~~p~~~GH--------~DL~~~F~~---~~~lvhqksGnCne  211 (301)
T TIGR01856       161 QAFRDYFESVYDSIQADLGLFKPLVIGH--------LDLVKKFAP---LTSLVHQKSGNCNE  211 (301)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEH--------HHHHHHHHH---HCCEEECCCCCCCC
T ss_conf             9999999999999998538668832301--------307866211---11214313677432


No 300
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=32.12  E-value=39  Score=14.94  Aligned_cols=103  Identities=19%  Similarity=0.266  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHHHH-HHHHHHHCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHCCCCCCCEECCCC
Q ss_conf             8999999998699899991679877899-9999985572332112445-4433446788998853100133321004467
Q gi|254780215|r   18 RHDVIMRAHQANVLKMIAIAIKVKDFVP-LIKLCQDYPSSIFCSVGTH-PCHAHEENEVLVDELVCLASHPRVVAIGETG   95 (262)
Q Consensus        18 ~~~~i~~a~~~gv~~~i~~~~~~~~~~~-~~~l~~~~p~~i~~a~GiH-P~~~~~~~~~~~~~l~~l~~~~~~~aIGEiG   95 (262)
                      ...+++.+...+. .+...|.+.+..+. ...+.++||+..  .+|.| |.+-.+..+..++.+..  ..+.++-|| . 
T Consensus        37 ~~~ll~~~~~~~~-~v~llG~~~~~~~~~~~~l~~~yP~l~--i~g~~~g~f~~~e~~~i~~~I~~--~~~div~vg-l-  109 (172)
T pfam03808        37 IPALLERAAERGK-RVFLLGGKPGVLEKAAARLRARYPGLR--IVGTHDGYFSPEEEEAIIEAINA--SGPDLLFVG-L-  109 (172)
T ss_pred             HHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCE--EEEEECCCCCHHHHHHHHHHHHH--CCCCEEEEE-C-
T ss_conf             9999999986498-389980888999999999998879955--99987999986899999999984--599999995-6-


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHH
Q ss_conf             75533221110246789999876642044203300023335799985
Q gi|254780215|r   96 LDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQ  142 (262)
Q Consensus        96 LD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~  142 (262)
                              ....|+.+..+   +...++.++ +-|++|.   ++.+.
T Consensus       110 --------G~PkQE~~~~~---~~~~~~~~v-~~~vGa~---~d~~a  141 (172)
T pfam03808       110 --------GAPKQEKWIAR---NRARLPVPV-FIGVGGS---FDFLA  141 (172)
T ss_pred             --------CCCHHHHHHHH---HHHHCCCCE-EEECCCH---HHHHH
T ss_conf             --------98177999999---998779987-9852401---24663


No 301
>PRK13129 consensus
Probab=32.10  E-value=39  Score=14.94  Aligned_cols=68  Identities=12%  Similarity=0.118  Sum_probs=31.2

Q ss_pred             CCCEECCCCHHHHHHHHCC--C--CEEECCCCCCHHH---HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf             3311214640234432103--5--2020233221133---3223333210566717983078667877768875882449
Q gi|254780215|r  152 FVIHCFSSSQKLADICLEL--G--GYISFTGMITFPK---YDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYV  224 (262)
Q Consensus       152 ~i~H~FsG~~~~~~~~l~~--g--~y~S~~g~i~~~~---~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i  224 (262)
                      +-+=+-+.+.+-++++.+.  |  |++|..|+ |-.+   ...+.+.++.+-     --||-|-.    ..-..++|..+
T Consensus       152 I~lvaPtt~~~Ri~~i~~~~~gFiY~vs~~Gv-TG~~~~~~~~~~~~i~~ik-----~~t~~Pv~----vGFGIs~~e~v  221 (267)
T PRK13129        152 ILLVAPTTPAERMKRIAQQSRGFTYLVSVTGV-TGERSQMENRVESLLQQLR-----QVTSKPIA----VGFGISGPEQA  221 (267)
T ss_pred             EEEECCCCCHHHHHHHHHCCCCEEEEEECCCC-CCCCCCCCHHHHHHHHHHH-----HHCCCCEE----EEECCCCHHHH
T ss_conf             89948999689999998168980898734665-6765445088999999999-----83489817----88447999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780215|r  225 VNTAK  229 (262)
Q Consensus       225 ~~~~~  229 (262)
                      ..+.+
T Consensus       222 ~~~~~  226 (267)
T PRK13129        222 RQVRE  226 (267)
T ss_pred             HHHHH
T ss_conf             99985


No 302
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=31.83  E-value=40  Score=14.91  Aligned_cols=52  Identities=13%  Similarity=0.081  Sum_probs=38.7

Q ss_pred             CCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC-CCEEEC
Q ss_conf             442033000233357999853100036753311214640234432103-520202
Q gi|254780215|r  123 GIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL-GGYISF  176 (262)
Q Consensus       123 ~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~-g~y~S~  176 (262)
                      +.-++..+.+-..|+.+.|++|.....  --+|.-+|+.+.++++.+. |+++.-
T Consensus        59 ~v~~v~ISvDP~rDtpe~L~~y~~~~~--~~w~~Ltg~~~~i~~l~~~~gv~~~~  111 (142)
T cd02968          59 DVQVVFISVDPERDTPEVLKAYAKAFG--PGWIGLTGTPEEIEALAKAFGVYYEK  111 (142)
T ss_pred             CEEEEEEEECCCCCCHHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHCCEEEEE
T ss_conf             579999990888899999999999736--58469989999999999976958997


No 303
>TIGR00250 TIGR00250 conserved hypothetical protein TIGR00250; InterPro: IPR005227   Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VIIcolicin E and RusA (IPR008822 from INTERPRO):  The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined.  The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex.   Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold.     Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes.   This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes.   The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma urealyticum (Q9PQY7 from SWISSPROT, ). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase . This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC . ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0004518 nuclease activity, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus.
Probab=31.82  E-value=40  Score=14.91  Aligned_cols=77  Identities=16%  Similarity=0.212  Sum_probs=46.8

Q ss_pred             CCCCCCCCCCCCCHHH-HHHHHHHCCCCCCCEECCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHCCCCCEEEC-----H
Q ss_conf             1244544334467889-9885310013332100446775533221--110246789999876642044203300-----0
Q gi|254780215|r   60 SVGTHPCHAHEENEVL-VDELVCLASHPRVVAIGETGLDRYHNAH--TIEEQKVVFLRHIEASRITGIPLVIHS-----R  131 (262)
Q Consensus        60 a~GiHP~~~~~~~~~~-~~~l~~l~~~~~~~aIGEiGLD~~~~~~--~~e~Q~~vF~~ql~lA~e~~~pv~iH~-----r  131 (262)
                      |-||---.+++...++ +..+++++.+-++--| =+||.+.=+.+  ++-.|-+-|.+  .++..|+.||.+|.     .
T Consensus        23 A~gi~tik~~~~~~d~Gl~~i~~l~ke~~~d~~-vvGlP~nM~Gt~g~~~~~~~kFA~--r~~~~~~v~v~l~DERL~t~   99 (133)
T TIGR00250        23 AQGIPTIKAQDGEPDWGLSRIEELLKEWKVDKI-VVGLPLNMDGTVGPLTKRAQKFAK--RLEGRFGVPVELMDERLSTV   99 (133)
T ss_pred             ECCCHHHHHCCCCCCCCHHHHHHHHHHCCCCEE-EECCCCCCCCCCCHHHHHHHHHHH--HHHHHHCCCEEEECCCCCHH
T ss_conf             044031121048886217999998731588978-861787878872502688899998--86554066437861761378


Q ss_pred             HHHHHHHH
Q ss_conf             23335799
Q gi|254780215|r  132 SADDDMAA  139 (262)
Q Consensus       132 ~a~~~~l~  139 (262)
                      .|...+++
T Consensus       100 ~A~~~L~~  107 (133)
T TIGR00250       100 EAESQLFA  107 (133)
T ss_pred             HHHHHHHH
T ss_conf             99998886


No 304
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=31.53  E-value=40  Score=14.88  Aligned_cols=32  Identities=16%  Similarity=0.324  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHCCCCCEEECHH--HHHHHHHHHH
Q ss_conf             8999987664204420330002--3335799985
Q gi|254780215|r  111 VFLRHIEASRITGIPLVIHSRS--ADDDMAAILQ  142 (262)
Q Consensus       111 vF~~ql~lA~e~~~pv~iH~r~--a~~~~l~iL~  142 (262)
                      -|.+-++.+.++++|+++-+-+  ..+..+++++
T Consensus       147 kfa~ave~v~~~~~pv~l~s~dpevmkaaLev~~  180 (467)
T COG1456         147 KFAEAVEKVAEAGLPVILCSFDPEVMKAALEVVK  180 (467)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf             9999999998658967999579999999998761


No 305
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.48  E-value=40  Score=14.87  Aligned_cols=51  Identities=18%  Similarity=0.095  Sum_probs=30.0

Q ss_pred             HCCHHHHHHHHHHCCCCEEEEECCC------HHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             2268999999998699899991679------87789999999855723321124454
Q gi|254780215|r   15 DEDRHDVIMRAHQANVLKMIAIAIK------VKDFVPLIKLCQDYPSSIFCSVGTHP   65 (262)
Q Consensus        15 ~~d~~~~i~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~~p~~i~~a~GiHP   65 (262)
                      ..|.-+.+....+.|.+.+..+-.+      .....-+.++++...-.+...=||+-
T Consensus        30 ~~dP~~~a~~~~~~Ga~~lhivDLd~a~~g~~~n~~~I~~i~~~~~~pi~vGGGIrs   86 (240)
T PRK13585         30 YGDPVEVAKRWVDAGAKTLHLVDLDGAFEGSRKNADIIEKIVEATDVSIQLGGGIRS   86 (240)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             689999999999879997999989772118944499999999737977899788587


No 306
>pfam02222 ATP-grasp ATP-grasp domain. This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.
Probab=31.30  E-value=14  Score=17.89  Aligned_cols=15  Identities=40%  Similarity=0.618  Sum_probs=10.5

Q ss_pred             HHHHHHCCCCCEEEC
Q ss_conf             876642044203300
Q gi|254780215|r  116 IEASRITGIPLVIHS  130 (262)
Q Consensus       116 l~lA~e~~~pv~iH~  130 (262)
                      .+.+.+++.|++|-.
T Consensus        21 ~~~~~~iGyP~vvKp   35 (171)
T pfam02222        21 IEAGQELGYPCVLKA   35 (171)
T ss_pred             HHHHHHCCCCEEEEE
T ss_conf             999997099789996


No 307
>TIGR02865 spore_II_E stage II sporulation protein E; InterPro: IPR014221   This entry contains the stage II sporulation protein E (SpoIIE), which is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation and it has phosphatase activity, located in the C-terminal region, which is required to activate sigma-F. All members of this entry are found in endospore-forming Gram-positive bacteria. A homologous protein, not a member of this entry, is found in the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis..
Probab=31.29  E-value=40  Score=14.85  Aligned_cols=137  Identities=15%  Similarity=0.212  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHH-------HHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHH-----HHHCCCCEEEC
Q ss_conf             678999987664204420330002-------333579998531000367533112146402344-----32103520202
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRS-------ADDDMAAILQEEMKKGPFPFVIHCFSSSQKLAD-----ICLELGGYISF  176 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~-------a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~-----~~l~~g~y~S~  176 (262)
                      ....++.++..  ++.-+.|-+++       ..+|.+-.|+=        .++==|+|..+.+|     .|+++|--+-.
T Consensus       629 ~~LlEk~l~~G--f~~~~AI~tvNSil~LrF~~~E~FsTlDL--------~~iDL~~g~~~F~KvGavpSFiKRG~~V~v  698 (794)
T TIGR02865       629 VRLLEKFLESG--FDREVAIKTVNSILSLRFSEDEKFSTLDL--------SVIDLYTGQAEFVKVGAVPSFIKRGAKVEV  698 (794)
T ss_pred             HHHHHHHHHCC--CCHHHHHHHHHHHHHCCCCCCCHHHHHHH--------HHHCCCCCEEEEEEECCCCCEEEECCEEEE
T ss_conf             99999999707--88768999988997314899840577678--------874477632789996161251666788999


Q ss_pred             ----C---CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             ----3---322113332233332105667179830786678777688758824499999999987289989999999999
Q gi|254780215|r  177 ----T---GMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKN  249 (262)
Q Consensus       177 ----~---g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N  249 (262)
                          |   |.+-.=..+--++.+  -|-|=|.+=||+=   -+++.|....-.-..++++.+.+-.-.+++|+++.+-++
T Consensus       699 I~~~~LPiG~~~~vd~e~~~~~L--~~GD~ivm~SDGv---LE~l~g~~~~e~k~~W~~~~l~e~~~~~P~E~Ae~~l~~  773 (794)
T TIGR02865       699 IRSSNLPIGILDEVDVELVRKKL--KNGDLIVMVSDGV---LEALEGEKEVEGKVLWLVRFLKETDTNDPEEIAEYLLEK  773 (794)
T ss_pred             EEECCCCCCCCCCCCCCCEEEEC--CCCCEEEEECCCH---HHCCCCCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             86278984654532343001233--7998799812313---330587300116288999996136778958899999999


Q ss_pred             HHHHH-HHHHHH
Q ss_conf             99984-256875
Q gi|254780215|r  250 ALKLF-SKISEC  260 (262)
Q Consensus       250 ~~~~f-~~~~~~  260 (262)
                      +.+.= |+++|+
T Consensus       774 a~~~~~g~~~DD  785 (794)
T TIGR02865       774 AIELRKGKIKDD  785 (794)
T ss_pred             HHHCCCCCEEEC
T ss_conf             986079961112


No 308
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family; InterPro: IPR011875    This entry describes Corynebacterium glutamicum GlgA and closely related proteins in other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related IPR011835 from INTERPRO, family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor ..
Probab=30.88  E-value=26  Score=16.11  Aligned_cols=20  Identities=25%  Similarity=0.624  Sum_probs=14.0

Q ss_pred             HHHHCCCCCCCCCCCCCCCC
Q ss_conf             99855723321124454433
Q gi|254780215|r   49 LCQDYPSSIFCSVGTHPCHA   68 (262)
Q Consensus        49 l~~~~p~~i~~a~GiHP~~~   68 (262)
                      |.++||..||...|+|=.+.
T Consensus         6 LtrEYPP~vYGGAGVHv~~L   25 (416)
T TIGR02149         6 LTREYPPEVYGGAGVHVEEL   25 (416)
T ss_pred             CCCCCCCCCCCCCCHHHHHH
T ss_conf             24678788678874118889


No 309
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=30.49  E-value=42  Score=14.76  Aligned_cols=59  Identities=15%  Similarity=0.097  Sum_probs=34.2

Q ss_pred             HHHHHHHHHCCCCCCCCEECCCCH-HHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             999853100036753311214640-23443210352-020233221133322333321056
Q gi|254780215|r  138 AAILQEEMKKGPFPFVIHCFSSSQ-KLADICLELGG-YISFTGMITFPKYDALRAIARGIP  196 (262)
Q Consensus       138 l~iL~~~~~~~~~~~i~H~FsG~~-~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP  196 (262)
                      ++.|++.....+.+.++|.=||.. +++++++++|. .|-|+..+...=.+.+++.++.=|
T Consensus       192 ~~~l~~i~~~~~vPLVLHGgSG~~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~~~~l~~~~  252 (285)
T PRK07709        192 FAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQ  252 (285)
T ss_pred             HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999840599879649999999999999985985999882889999999999997397


No 310
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=30.33  E-value=42  Score=14.75  Aligned_cols=111  Identities=17%  Similarity=0.264  Sum_probs=56.6

Q ss_pred             EECCCCCHHH-HCCHHHHHHHHHHCCCCEEEEE----C------CCHHHHHHH---HHHHHH---CC----------CCC
Q ss_conf             6138887565-2268999999998699899991----6------798778999---999985---57----------233
Q gi|254780215|r    5 THCHLLLPDF-DEDRHDVIMRAHQANVLKMIAI----A------IKVKDFVPL---IKLCQD---YP----------SSI   57 (262)
Q Consensus         5 ~H~HL~~~~~-~~d~~~~i~~a~~~gv~~~i~~----~------~~~~~~~~~---~~l~~~---~p----------~~i   57 (262)
                      +=.||..-.. -+...++|++....||..+++-    .      ....++.-+   .++.++   .+          +..
T Consensus        76 ~v~HLtC~~~t~~e~~~~L~~y~~~Gi~~ilALRGD~p~~~~~~~~~~~~~yA~eLV~~Ir~~~g~~GIy~~~E~V~~~F  155 (302)
T TIGR00676        76 TVPHLTCIGSTREEIEEILREYRELGIRNILALRGDPPDETDFEPAPGGFKYASELVEFIRSEHGFGGIYLDGEDVTEDF  155 (302)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCC
T ss_conf             30000023689899999999998748867987437688888656588766776899999983689985564776457655


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             2112445443344678899885310013332100446775533221110246789999876642044
Q gi|254780215|r   58 FCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGI  124 (262)
Q Consensus        58 ~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~  124 (262)
                      ...++..|.. |....+....+..|..  +|    +.|=|+--++-=.+  -+.|.++.+.++..|-
T Consensus       156 ~I~VAaYPE~-Hpea~~~~~D~~nLK~--KV----dAGAd~aITQlFFd--nd~y~rF~d~c~~aGI  213 (302)
T TIGR00676       156 EIGVAAYPEK-HPEAPNLEEDIENLKR--KV----DAGADYAITQLFFD--NDDYYRFVDRCRAAGI  213 (302)
T ss_pred             EEEEEECCCC-CCCCCCHHHHHHHHHH--HH----HHCCCCEEEEEECC--HHHHHHHHHHHHHCCC
T ss_conf             0556425887-8888888999999999--88----62778033111115--6678889999998789


No 311
>PRK13114 consensus
Probab=30.29  E-value=42  Score=14.74  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=11.5

Q ss_pred             CEECCCCHHHHHHHHCC--C--CEEECCC
Q ss_conf             11214640234432103--5--2020233
Q gi|254780215|r  154 IHCFSSSQKLADICLEL--G--GYISFTG  178 (262)
Q Consensus       154 ~H~FsG~~~~~~~~l~~--g--~y~S~~g  178 (262)
                      +=+=+.+.+-+++..+.  |  ||+|..|
T Consensus       149 liaPtt~~~Ri~~i~~~a~gFiY~vs~~G  177 (266)
T PRK13114        149 LATPTTDAARLPAVLEGASGFLYYVSVAG  177 (266)
T ss_pred             EECCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf             75699979999999973899589984455


No 312
>pfam00390 malic Malic enzyme, N-terminal domain.
Probab=30.17  E-value=42  Score=14.73  Aligned_cols=38  Identities=16%  Similarity=-0.034  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHCC-CCCEEECHH-HHHHHHHHHHHH
Q ss_conf             24678999987664204-420330002-333579998531
Q gi|254780215|r  107 EQKVVFLRHIEASRITG-IPLVIHSRS-ADDDMAAILQEE  144 (262)
Q Consensus       107 ~Q~~vF~~ql~lA~e~~-~pv~iH~r~-a~~~~l~iL~~~  144 (262)
                      .--++++++++.+++.= --..||.-+ +-...+++|++|
T Consensus       142 eYd~f~deFv~av~~~~~p~~liqfEDF~~~nA~~lLerY  181 (182)
T pfam00390       142 EYDEFVDEFVEAVKALFPPFGGIQFEDFGAPNAFEILERY  181 (182)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHC
T ss_conf             9999999999999987099848986428954289999851


No 313
>pfam02219 MTHFR Methylenetetrahydrofolate reductase. This family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from bacteria and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The structure for this domain is known to be a TIM barrel.
Probab=30.13  E-value=42  Score=14.72  Aligned_cols=21  Identities=14%  Similarity=0.245  Sum_probs=9.7

Q ss_pred             HHHHHHHHHCCCCEEEEECCC
Q ss_conf             999999998699899991679
Q gi|254780215|r   19 HDVIMRAHQANVLKMIAIAIK   39 (262)
Q Consensus        19 ~~~i~~a~~~gv~~~i~~~~~   39 (262)
                      ...+..+...||..+++..-|
T Consensus        87 ~~~L~~~~~~GI~niLaLrGD  107 (286)
T pfam02219        87 DDALEDAKALGIRNILALRGD  107 (286)
T ss_pred             HHHHHHHHHCCCCEEEEECCC
T ss_conf             999999998598858761488


No 314
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=29.99  E-value=42  Score=14.71  Aligned_cols=51  Identities=6%  Similarity=0.115  Sum_probs=29.4

Q ss_pred             HHCCHHHHHHHHHHCCCCEEEEECCC------HHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             52268999999998699899991679------8778999999985572332112445
Q gi|254780215|r   14 FDEDRHDVIMRAHQANVLKMIAIAIK------VKDFVPLIKLCQDYPSSIFCSVGTH   64 (262)
Q Consensus        14 ~~~d~~~~i~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~~p~~i~~a~GiH   64 (262)
                      +..|..+++....+.|++.+..+-.+      ...+.-+.++++...-.+...=||.
T Consensus        27 ~~gdP~~~a~~~~~~g~d~i~ivDLda~~~~~~~n~~~i~~i~~~~~~pi~vgGGIr   83 (229)
T pfam00977        27 YAGDPVELAKRYEEEGADELHFVDLDAAKEGRPVNLDLIEEIAEEVFIPVQVGGGIR   83 (229)
T ss_pred             ECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCEE
T ss_conf             779999999999987999899996866302681069999999986698789964561


No 315
>TIGR00963 secA preprotein translocase, SecA subunit; InterPro: IPR000185   Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome.     The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB  is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion .   SecA is a cytoplasmic protein of 800 to 960 amino acid residues. Homologs of secA are also encoded in the chloroplast genome of some algae  as well as in the nuclear genome of plants . It could be involved in the intraorganellar protein transport into thylakoids.; GO: 0005524 ATP binding, 0006605 protein targeting, 0006886 intracellular protein transport.
Probab=29.96  E-value=16  Score=17.46  Aligned_cols=18  Identities=33%  Similarity=0.488  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999842568
Q gi|254780215|r  241 DLMEETTKNALKLFSKIS  258 (262)
Q Consensus       241 ei~~~~~~N~~~~f~~~~  258 (262)
                      .+|.+|++|+-|+|+|++
T Consensus       357 T~AtITyQNfFrlY~KLs  374 (904)
T TIGR00963       357 TLATITYQNFFRLYEKLS  374 (904)
T ss_pred             EEEEHHHHHHHHHHHHHC
T ss_conf             244044576765426544


No 316
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=29.95  E-value=43  Score=14.70  Aligned_cols=52  Identities=13%  Similarity=0.169  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHCCCCCEEE--C-----HHHHHHHHHHHHHHHHC--------CCCCCCCEECCCC
Q ss_conf             678999987664204420330--0-----02333579998531000--------3675331121464
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIH--S-----RSADDDMAAILQEEMKK--------GPFPFVIHCFSSS  160 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH--~-----r~a~~~~l~iL~~~~~~--------~~~~~i~H~FsG~  160 (262)
                      +++.+...+...++++|-.||  |     -+.++-+++.|+.....        .-..+=||+|.|+
T Consensus       212 reIi~~L~~a~e~LglPH~lHvH~nnLG~PGN~~ttleT~~~~eg~~~~r~q~~HltHiQFhsYgg~  278 (556)
T TIGR03121       212 REIIKGLARANEELGLPHSIHVHCNNLGVPGNYETTLDTLDAAEGVKPNRNQVLHLTHVQFHSYGGT  278 (556)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCC
T ss_conf             9999999999985489963577126689986168999999986599754444057645742014788


No 317
>pfam02007 MtrH Tetrahydromethanopterin S-methyltransferase MtrH subunit. The enzyme tetrahydromethanopterin S-methyltransferase EC:2.1.1.86 is composed of eight subunits. The enzyme is a membrane- associated enzyme complex which catalyses an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide.
Probab=29.83  E-value=43  Score=14.69  Aligned_cols=142  Identities=13%  Similarity=0.102  Sum_probs=62.3

Q ss_pred             HCCCCEEEE-ECCCHHHHHHHHHHHHHCCC---CCCCCCC---CCC-CCCCCCC---HHHHHHHHHHCCCCCCCEECCCC
Q ss_conf             869989999-16798778999999985572---3321124---454-4334467---88998853100133321004467
Q gi|254780215|r   27 QANVLKMIA-IAIKVKDFVPLIKLCQDYPS---SIFCSVG---THP-CHAHEEN---EVLVDELVCLASHPRVVAIGETG   95 (262)
Q Consensus        27 ~~gv~~~i~-~~~~~~~~~~~~~l~~~~p~---~i~~a~G---iHP-~~~~~~~---~~~~~~l~~l~~~~~~~aIGEiG   95 (262)
                      .-|...++. ++.+++...+.++......+   .+-.+.|   +|- .++.+..   ......+..-..+.++-|+-|-+
T Consensus        62 ~TGnp~~~qI~g~t~EA~~kYidfv~~i~d~PfliDSt~~~ar~aa~kya~E~GladR~IYNSIn~s~~~~EieaL~esd  141 (296)
T pfam02007        62 ETGNPYLVQIFGETPEAIIRYIDFVADVTDAPFLIDSTEGEVRLAAAKYATEVGLADRAIYNSINASIEDSEIEALAESD  141 (296)
T ss_pred             HHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf             55896577764489899999888763257787564388678889998665551446778875167667889999998569


Q ss_pred             CC------CCCCCCCCHHHHHHHHH--------HHHHHHHCCC--CCEEEC---HH-----HHHHHHHHHHHHHHCCCCC
Q ss_conf             75------53322111024678999--------9876642044--203300---02-----3335799985310003675
Q gi|254780215|r   96 LD------RYHNAHTIEEQKVVFLR--------HIEASRITGI--PLVIHS---RS-----ADDDMAAILQEEMKKGPFP  151 (262)
Q Consensus        96 LD------~~~~~~~~e~Q~~vF~~--------ql~lA~e~~~--pv~iH~---r~-----a~~~~l~iL~~~~~~~~~~  151 (262)
                      ++      |.....+.+--.++++.        .|++|.+.+.  |++=-.   .+     +.+.++. .++. ...|.+
T Consensus       142 i~aaIiLafnp~dpsv~gr~~~l~~gg~~~~~gll~~a~~~GI~~~liD~avtplgsg~g~a~r~~~a-vK~~-~G~P~G  219 (296)
T pfam02007       142 VEAAIVLAFNPMDPSVEGRIQILENGGGTAEKGMLEIAEKCGITKYLIDTAVTPLGSGAGAAVKATIA-VKAK-FGLPVG  219 (296)
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHH-HHHH-CCCCCC
T ss_conf             97689986179999722569998705664211079999975996435432135677751699999999-9998-099767


Q ss_pred             CCCEECCCCHHHHHHHHCC
Q ss_conf             3311214640234432103
Q gi|254780215|r  152 FVIHCFSSSQKLADICLEL  170 (262)
Q Consensus       152 ~i~H~FsG~~~~~~~~l~~  170 (262)
                      +-.|.-....++++++.+.
T Consensus       220 ~g~hN~~saW~wlk~~kk~  238 (296)
T pfam02007       220 SGIHNAPSAWDWLRKFKKK  238 (296)
T ss_pred             CCCCCCCHHHHHHHHHHCC
T ss_conf             6534683076899997213


No 318
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=29.80  E-value=43  Score=14.69  Aligned_cols=25  Identities=20%  Similarity=0.167  Sum_probs=11.8

Q ss_pred             CEECCCCHHHHHHHHCC--C--CEEECCC
Q ss_conf             11214640234432103--5--2020233
Q gi|254780215|r  154 IHCFSSSQKLADICLEL--G--GYISFTG  178 (262)
Q Consensus       154 ~H~FsG~~~~~~~~l~~--g--~y~S~~g  178 (262)
                      +=+-+-+.+-+++..+.  |  |++|..|
T Consensus       145 lvsPtt~~~Ri~~i~~~s~gFiY~vs~~G  173 (258)
T pfam00290       145 LVAPTTSDERLKTISEAASGFVYLVSRAG  173 (258)
T ss_pred             EECCCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf             84588819999999960898089985344


No 319
>PRK13753 dihydropteroate synthase; Provisional
Probab=29.76  E-value=43  Score=14.68  Aligned_cols=16  Identities=25%  Similarity=0.202  Sum_probs=9.6

Q ss_pred             HHHHHHCCCCCE-EECH
Q ss_conf             876642044203-3000
Q gi|254780215|r  116 IEASRITGIPLV-IHSR  131 (262)
Q Consensus       116 l~lA~e~~~pv~-iH~r  131 (262)
                      ++++.+++.|++ .|.+
T Consensus       112 ~~~va~~~~~~vlMH~~  128 (279)
T PRK13753        112 YPDIAEADCRLVVMHSA  128 (279)
T ss_pred             HHHHHHHCCCEEEEECC
T ss_conf             99999719988998268


No 320
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=29.59  E-value=43  Score=14.66  Aligned_cols=57  Identities=19%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             CCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf             678899885310013332100446775533221110246789999876642044203300
Q gi|254780215|r   71 ENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS  130 (262)
Q Consensus        71 ~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~  130 (262)
                      ..+..++.+..++.+.++.+|- ||+...-+.+.-+..++.|...|+  +.+++||.+..
T Consensus        35 ~~~~~~~~l~~~i~~~~~~~iv-iG~P~~~~g~~~~~~~~~f~~~l~--~~~~i~v~~~D   91 (99)
T smart00732       35 NKEADAARLKKLIKKYQPDLIV-IGLPLNMNGTASRETEEAFAELLK--ERFNLPVVLVD   91 (99)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEE-ECCCCCCCCCCCHHHHHHHHHHHH--HCCCCCEEEEE
T ss_conf             8269999999999984998899-747524899819999999999985--17899889995


No 321
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=29.57  E-value=43  Score=14.66  Aligned_cols=55  Identities=18%  Similarity=0.231  Sum_probs=25.4

Q ss_pred             HHHHHHHHHCCCCCEEECHHHH----HHHHHHHHHHHHCCCCCCCCEECCCCH--HHHHHHHC
Q ss_conf             9998766420442033000233----357999853100036753311214640--23443210
Q gi|254780215|r  113 LRHIEASRITGIPLVIHSRSAD----DDMAAILQEEMKKGPFPFVIHCFSSSQ--KLADICLE  169 (262)
Q Consensus       113 ~~ql~lA~e~~~pv~iH~r~a~----~~~l~iL~~~~~~~~~~~i~H~FsG~~--~~~~~~l~  169 (262)
                      .+--+||++++-.++++|-=..    +.+++-+++.+.  ..-+++||-.=..  +....+++
T Consensus        46 krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~g--~lD~lVHsIaFa~k~el~G~~~d  106 (259)
T COG0623          46 KRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKWG--KLDGLVHSIAFAPKEELKGDYLD  106 (259)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHC--CCCEEEEEECCCCHHHHCCCEEC
T ss_conf             99999876416776996677876899999999987607--66479987314886781786000


No 322
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=29.23  E-value=29  Score=15.78  Aligned_cols=70  Identities=16%  Similarity=0.199  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECHHHHH-----HHHHHHHHHHHCCCCCCCCEECCCCH-HHHHHHHCCCCEEECCCCCCH
Q ss_conf             678999987664204420330002333-----57999853100036753311214640-234432103520202332211
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHSRSADD-----DMAAILQEEMKKGPFPFVIHCFSSSQ-KLADICLELGGYISFTGMITF  182 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~-----~~l~iL~~~~~~~~~~~i~H~FsG~~-~~~~~~l~~g~y~S~~g~i~~  182 (262)
                      ++.-+.|+++|-|.+.|-+|-.-+..+     ..+|+.  ++..  +++-.|.+.|-. -.+.+.|.-|-||=.|+.-.+
T Consensus       148 ~D~HeaQVQfALERGiPA~igvlgT~rLPyPs~sFDm~--HCsR--C~IpW~~~dG~~LlEvdRvLRPGGYfV~S~pPv~  223 (506)
T pfam03141       148 KDVHEAQVQFALERGVPAMLGVLGTRRLPYPSRSFDMA--HCSR--CLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             CCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHH--HHCC--CCCCCCCCCCEEEEEEEHCCCCCCEEEECCCCCC
T ss_conf             64118889999971852566564035358875330124--4224--5674104797788654000047866994678655


No 323
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.20  E-value=44  Score=14.62  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=10.2

Q ss_pred             ECCCCHHHHHHHHCC--C--CEEECCC
Q ss_conf             214640234432103--5--2020233
Q gi|254780215|r  156 CFSSSQKLADICLEL--G--GYISFTG  178 (262)
Q Consensus       156 ~FsG~~~~~~~~l~~--g--~y~S~~g  178 (262)
                      +=+-+.+-+++..+.  |  |++|..|
T Consensus       146 aPtt~~~Ri~~i~~~s~gfiY~vs~~G  172 (256)
T PRK13111        146 APTTTDERLKKIASHASGFVYYVSRAG  172 (256)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf             999988999999962698599985677


No 324
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235   This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=29.19  E-value=44  Score=14.62  Aligned_cols=134  Identities=14%  Similarity=0.143  Sum_probs=81.5

Q ss_pred             HHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCC-----------------CCCCCCCCCCCCCCC-HHHHHHHHHHCCCC
Q ss_conf             998699899991679877899999998557233-----------------211244544334467-88998853100133
Q gi|254780215|r   25 AHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSI-----------------FCSVGTHPCHAHEEN-EVLVDELVCLASHP   86 (262)
Q Consensus        25 a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i-----------------~~a~GiHP~~~~~~~-~~~~~~l~~l~~~~   86 (262)
                      |.+-||..+..-|-....+.-++.|++. .++|                 ++-+||+=.++...+ .+.   ++..+. +
T Consensus        68 ALEGGvaal~~ASG~AA~~~Ailnla~A-GDnIVsS~~LYGGTynLF~~TlkrlGIevrFvd~dd~pe~---~~k~id-~  142 (434)
T TIGR01326        68 ALEGGVAALAVASGQAAITYAILNLAQA-GDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDGDDDPEE---LEKAID-E  142 (434)
T ss_pred             HHCCCEEEHHHCHHHHHHHHHHHHHHHC-CCCEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCCCHHH---HHHHCC-C
T ss_conf             4215500021011579999999999726-9826980644422578999955544814887278888789---997606-6


Q ss_pred             CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCCEEE-CHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHH
Q ss_conf             321004467755332211102467899998766420--4420330-0023335799985310003675331121464023
Q gi|254780215|r   87 RVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRIT--GIPLVIH-SRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKL  163 (262)
Q Consensus        87 ~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~--~~pv~iH-~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~  163 (262)
                      +..||      |...-.....-.-=|++.-++|++.  +-|+++= +..+-+=+++=+    ..+ .-+|+||       
T Consensus       143 nTKAv------f~EtIgNP~~~v~Die~~a~~Ah~~PhgvPliVDNT~atpGYL~rPi----~hG-ADIVvhS-------  204 (434)
T TIGR01326       143 NTKAV------FAETIGNPALNVPDIEAVAEVAHAHPHGVPLIVDNTFATPGYLCRPI----DHG-ADIVVHS-------  204 (434)
T ss_pred             CCEEE------EEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHH----HCC-CCEEEEE-------
T ss_conf             75189------84012387767678589999998678983488747868764100645----649-8679961-------


Q ss_pred             HHHHHCCCCEEECCCCCCH
Q ss_conf             4432103520202332211
Q gi|254780215|r  164 ADICLELGGYISFTGMITF  182 (262)
Q Consensus       164 ~~~~l~~g~y~S~~g~i~~  182 (262)
                      +.||+. |-=.|++|+|..
T Consensus       205 aTK~iG-GHG~aiGG~ivD  222 (434)
T TIGR01326       205 ATKYIG-GHGTAIGGVIVD  222 (434)
T ss_pred             ECCCCC-CCEEEEEEEEEE
T ss_conf             001012-631465047882


No 325
>PRK13117 consensus
Probab=29.09  E-value=44  Score=14.61  Aligned_cols=105  Identities=13%  Similarity=0.106  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHCCCC-CEEECH--HHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC--C--CEEECCCCCCH--
Q ss_conf             99998766420442-033000--233357999853100036753311214640234432103--5--20202332211--
Q gi|254780215|r  112 FLRHIEASRITGIP-LVIHSR--SADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL--G--GYISFTGMITF--  182 (262)
Q Consensus       112 F~~ql~lA~e~~~p-v~iH~r--~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~--g--~y~S~~g~i~~--  182 (262)
                      ++++++-|++.+.- ++|..-  ...++..+..+++   +...+-+=.=+.+.+-++++.+.  |  ||+|..|+---  
T Consensus       111 ~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~---gl~~I~lv~Ptt~~~Ri~~i~~~a~GFiY~vs~~GvTG~~~  187 (268)
T PRK13117        111 IDNFYARCAEAGVDSVLIADVPVEESAPFRQAAKKH---GIAPIFICPPNADDDTLRQIASLGRGYTYLLSRAGVTGAEN  187 (268)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf             999999999769877985799978858999999867---98379984799999999999974798599983677788986


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             3332233332105667179830786678777688758824499999
Q gi|254780215|r  183 PKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTA  228 (262)
Q Consensus       183 ~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~  228 (262)
                      .-...+.+.++.+     =-.||-|-..    .-..++|..+..+.
T Consensus       188 ~~~~~~~~~i~~i-----k~~t~~Pv~v----GFGIs~~e~v~~~~  224 (268)
T PRK13117        188 KAAAPLNHLVEKL-----KEYNAPPPLQ----GFGISEPEQVKAAI  224 (268)
T ss_pred             CCCHHHHHHHHHH-----HHCCCCCEEE----EECCCCHHHHHHHH
T ss_conf             6627799999999-----9647998699----83789999999998


No 326
>TIGR02033 D-hydantoinase dihydropyrimidinase; InterPro: IPR011778    This entry represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme ..
Probab=29.08  E-value=44  Score=14.61  Aligned_cols=167  Identities=19%  Similarity=0.214  Sum_probs=87.5

Q ss_pred             CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCE-EECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHH
Q ss_conf             3210044677553322111024678999987664204-4203-3000233357999853100036753311214640234
Q gi|254780215|r   87 RVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITG-IPLV-IHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLA  164 (262)
Q Consensus        87 ~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~-~pv~-iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~  164 (262)
                      +.++-|-+|=-|+.-.-|.+..=+++-|-|.||+--| .||. +|.=.+  +.++.+.+-+.++. ++.-=-+.-.+-.=
T Consensus       201 ~~~a~G~T~P~yHalSRP~e~EaEA~~R~I~~A~~a~n~PLy~vHvS~~--~a~~~i~~AR~~G~-~V~~ETcp~YL~Ld  277 (466)
T TIGR02033       201 RLLAQGKTGPEYHALSRPPELEAEAVARAIKLAALADNAPLYIVHVSTK--DALDEIAEAREKGQ-PVYGETCPQYLLLD  277 (466)
T ss_pred             HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHCCC-CEEEEEECCCCCCC
T ss_conf             9996478788875334733325779999999999965986589996377--78999999985399-08998606721134


Q ss_pred             HHHHC-C----CCEEECCCCCC-HHHH-HHHHHHHHCCCCCCEEEEEC-CCCCCCCC---CC-CCC---CCHH-------
Q ss_conf             43210-3----52020233221-1333-22333321056671798307-86678777---68-875---8824-------
Q gi|254780215|r  165 DICLE-L----GGYISFTGMIT-FPKY-DALRAIARGIPMDRVLVETD-SPYIVPVS---CQ-GKR---NEPA-------  222 (262)
Q Consensus       165 ~~~l~-~----g~y~S~~g~i~-~~~~-~~~~e~v~~iPldriLlETD-sP~l~p~~---~r-~~~---n~P~-------  222 (262)
                      ...++ .    |..|=.||.+- .... +.+...++.=-|+  ++=|| +||-+-+.   -+ |+.   --|-       
T Consensus       278 ~~~yd~~p~~~~AKyv~SPPLRP~~~~qd~Lw~~l~~G~Lq--~v~sDHC~F~~~~~Gkl~~~G~dDF~~iPNG~PGvE~  355 (466)
T TIGR02033       278 DTLYDDKPGFEAAKYVLSPPLRPEKEDQDALWQALSSGALQ--TVSSDHCTFNFAQKGKLKAIGKDDFRKIPNGLPGVEE  355 (466)
T ss_pred             HHHHCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCC--EEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             67815877726550121800133876608999987618511--0330336635435614112888764507884586211


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             499999999987289989999999999999842568
Q gi|254780215|r  223 YVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKIS  258 (262)
Q Consensus       223 ~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~~  258 (262)
                      -+.-+.+..=+-=.+++|+..+.|..|.-|+||-+.
T Consensus       356 Rm~~lf~~gV~~Gri~~e~FV~~TSt~~AK~F~lyP  391 (466)
T TIGR02033       356 RMELLFDEGVAKGRITLEKFVELTSTNPAKIFNLYP  391 (466)
T ss_pred             CHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             147988733265878766798998886688718898


No 327
>PRK06321 replicative DNA helicase; Provisional
Probab=28.68  E-value=45  Score=14.56  Aligned_cols=129  Identities=15%  Similarity=0.145  Sum_probs=68.1

Q ss_pred             HHHHHHHHHH--HHHHCCCCCEEECHHH--HHHHHHHHHHHHHCCCCCCCCEECCCC--HH-------HHHHHHCCCCEE
Q ss_conf             4678999987--6642044203300023--335799985310003675331121464--02-------344321035202
Q gi|254780215|r  108 QKVVFLRHIE--ASRITGIPLVIHSRSA--DDDMAAILQEEMKKGPFPFVIHCFSSS--QK-------LADICLELGGYI  174 (262)
Q Consensus       108 Q~~vF~~ql~--lA~e~~~pv~iH~r~a--~~~~l~iL~~~~~~~~~~~i~H~FsG~--~~-------~~~~~l~~g~y~  174 (262)
                      -+..|.-++.  +|.+.+.||.+.+...  ..-+.++|........ .-+   -+|.  .+       .+.++-++.+|+
T Consensus       238 GKTalalnia~~~a~~~~~~v~~fSLEMs~~ql~~R~ls~~s~i~~-~~i---~~g~l~~~e~~~~~~a~~~l~~~~l~i  313 (472)
T PRK06321        238 GKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVES-KKI---SVGDLSGRDFQRIVSVVNEMQEHTLLI  313 (472)
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCC-CCC---CCCCCCHHHHHHHHHHHHHHHHCCEEE
T ss_conf             7799999999999985699469975779999999999874037675-521---047999999999999999985487578


Q ss_pred             ECCCCCCHHH-HHHHHHHHHCCCCCCEEEEECCCCCCCCC----CC---CCCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             0233221133-32233332105667179830786678777----68---87588244999999999872899899999
Q gi|254780215|r  175 SFTGMITFPK-YDALRAIARGIPMDRVLVETDSPYIVPVS----CQ---GKRNEPAYVVNTAKALAKEKDVSYEDLME  244 (262)
Q Consensus       175 S~~g~i~~~~-~~~~~e~v~~iPldriLlETDsP~l~p~~----~r---~~~n~P~~i~~~~~~iA~i~~~~~eei~~  244 (262)
                      -=++.++-.. ..+.|.+-+..+++-+++  |  |+--..    .+   .+..+-+.|..-+..+|+-.++++--+++
T Consensus       314 dd~~~~ti~~i~~~~r~~k~~~~l~~vvI--D--YlqL~~~~~~~~~~~~r~~~i~~isr~lK~lAkel~vpvi~LsQ  387 (472)
T PRK06321        314 DDQPGLKITDLRARARRMKESYDIQFLII--D--YLQLLSGSGTLRNSESRQTEISEISRMLKNLARELNIPILCLSQ  387 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCCEEEE--E--EHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             67999989999999999987389987999--7--27741677777778889999999999999999997997999722


No 328
>COG3394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.57  E-value=45  Score=14.55  Aligned_cols=52  Identities=15%  Similarity=0.273  Sum_probs=37.8

Q ss_pred             HCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             2268999999998699899991679877899999998557233211244544334
Q gi|254780215|r   15 DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAH   69 (262)
Q Consensus        15 ~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~   69 (262)
                      ..-...-|-.+.+-||..--..-++...+..+.+++|++|.   ..+|+|=....
T Consensus        15 s~G~nyGIiea~~~GvvtsTt~M~n~pa~~hAv~l~k~~p~---l~IGlHl~LT~   66 (257)
T COG3394          15 SKGVNYGIIEAHRTGVVTSTTLMVNMPAIDHAVALSKKLPA---LKIGLHLNLTL   66 (257)
T ss_pred             CCCCCHHHHHHHHCCCEECEEECCCCCCCHHHHHHHHHCCC---CCEEEEEEECC
T ss_conf             65520558889867943120230588653779998765888---75111478603


No 329
>TIGR02701 shell_carb_anhy carboxysome shell carbonic anhydrase; InterPro: IPR014074   This entry describes a carboxysome shell protein that proves to be a novel class, designated epsilon, of carbonic anhydrase. It tends to be encoded near genes for RuBisCo and other carboxysome shell proteins..
Probab=28.32  E-value=14  Score=17.85  Aligned_cols=75  Identities=19%  Similarity=0.290  Sum_probs=32.4

Q ss_pred             CCCCEECCCCHHHHHHHHCCCC---EEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC---------------CCC
Q ss_conf             5331121464023443210352---0202332211333223333210566717983078667---------------877
Q gi|254780215|r  151 PFVIHCFSSSQKLADICLELGG---YISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYI---------------VPV  212 (262)
Q Consensus       151 ~~i~H~FsG~~~~~~~~l~~g~---y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l---------------~p~  212 (262)
                      -.|.|...|.+.-    -+.|.   |||+|-.  |+. =++|...=-.-||-  +|--+|++               .|.
T Consensus       341 ~YV~~~h~GrYpP----nDiGHaERFI~VG~G--F~E-VQ~RNL~YfahLDT--VEEGa~DvDVGikIF~gLNV~~GLPi  411 (463)
T TIGR02701       341 EYVVRSHGGRYPP----NDIGHAERFISVGDG--FDE-VQLRNLAYFAHLDT--VEEGAPDVDVGIKIFKGLNVSRGLPI  411 (463)
T ss_pred             HHHCCCCCCCCCC----CCCCCCCCEEECCCC--CCE-EEEEECEEEEEEEE--EEECCCCCCCCCEEECCCCCCCCCCC
T ss_conf             8853678798882----336746441201676--123-46431102455445--75378322144044434463678883


Q ss_pred             C----CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             7----688758824499999999987
Q gi|254780215|r  213 S----CQGKRNEPAYVVNTAKALAKE  234 (262)
Q Consensus       213 ~----~r~~~n~P~~i~~~~~~iA~i  234 (262)
                      |    |+-..+-|..=.+++.+.-++
T Consensus       412 Pv~vhf~Yd~rVPGSReRav~~a~Rv  437 (463)
T TIGR02701       412 PVAVHFDYDGRVPGSRERAVEKAKRV  437 (463)
T ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             44898741877888466899999999


No 330
>pfam03102 NeuB NeuB family. NeuB is the prokaryotic N-acetylneuraminic acid (Neu5Ac) synthase. It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesize the 9-phosphate form, Neu5Ac-9-P, and utilize ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.
Probab=27.88  E-value=46  Score=14.47  Aligned_cols=61  Identities=18%  Similarity=0.261  Sum_probs=31.6

Q ss_pred             HHHHHHCCCCCEEECHHH-HHHH---HHHHHHHHHCCCCCCCCEECCCCH---HH-----HHHHHC-CCCEEECCC
Q ss_conf             876642044203300023-3357---999853100036753311214640---23-----443210-352020233
Q gi|254780215|r  116 IEASRITGIPLVIHSRSA-DDDM---AAILQEEMKKGPFPFVIHCFSSSQ---KL-----ADICLE-LGGYISFTG  178 (262)
Q Consensus       116 l~lA~e~~~pv~iH~r~a-~~~~---l~iL~~~~~~~~~~~i~H~FsG~~---~~-----~~~~l~-~g~y~S~~g  178 (262)
                      |+-..+.++|++|=+=.+ ..|+   +++++...  ...-+++||.|.=+   +.     ++.+-+ .++-+|||.
T Consensus       106 i~~i~k~~kpiiiSTG~s~~~eI~~~i~~~~~~~--~~~i~llhCvS~YPt~~~~~nL~~I~~lk~~f~~~iG~Sd  179 (240)
T pfam03102       106 LRYIAKTGKPVILSTGMATLEEIEEAVETLREAG--NEDITLLHCTSEYPAPFEDVNLRAIPTLKEAFGVPVGYSD  179 (240)
T ss_pred             HHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCC--CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf             9999973996899579888999999999999634--5677686658889997466009998899986799688479


No 331
>TIGR00294 TIGR00294 conserved hypothetical protein TIGR00294; InterPro: IPR003801   This entry describes proteins of unknown function..
Probab=27.85  E-value=46  Score=14.47  Aligned_cols=83  Identities=16%  Similarity=0.124  Sum_probs=54.2

Q ss_pred             CCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-----CCCCCCCCHHHHHH
Q ss_conf             3311214640234432103520202332211333223333210566717983078667877-----76887588244999
Q gi|254780215|r  152 FVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPV-----SCQGKRNEPAYVVN  226 (262)
Q Consensus       152 ~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~-----~~r~~~n~P~~i~~  226 (262)
                      .=.|-|+-   .|+-+...||-+++...++-   +..+|+.+.+.--...-+-|.||....     ..-|-..-|+.-..
T Consensus        92 l~~h~ya~---~aev~m~s~~i~~~~SP~~~---~~tqE~~kim~~a~~~~~~~~PWi~~~k~~g~Ev~G~t~cpcaq~~  165 (323)
T TIGR00294        92 LKKHRYAT---KAEVYMNSDFILSKRSPVTG---QFTQELAKIMGEASGTRDDDFPWIFERKMVGAEVVGITACPCAQEL  165 (323)
T ss_pred             HHHHHHHH---HHHHHHCCCEEEECCCCCCC---CHHHHHHHHHCCCEEEEECCCCEEEEEEECCEEECCCEECHHHHHH
T ss_conf             02567777---76423325623311577664---3025555432363476606877689986245003132126167899


Q ss_pred             HHH----HHHHHHCCCHHH
Q ss_conf             999----999872899899
Q gi|254780215|r  227 TAK----ALAKEKDVSYED  241 (262)
Q Consensus       227 ~~~----~iA~i~~~~~ee  241 (262)
                      |.+    .+++ .|+|-+.
T Consensus       166 ~~~~~~~~l~~-~G~~~e~  183 (323)
T TIGR00294       166 VKEKSQEKLQE-AGFSDET  183 (323)
T ss_pred             HHHHHHHHHHH-CCCCHHH
T ss_conf             99986899985-6897212


No 332
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues,  a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=27.74  E-value=46  Score=14.45  Aligned_cols=21  Identities=19%  Similarity=0.241  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHCCCCCEEEC
Q ss_conf             789999876642044203300
Q gi|254780215|r  110 VVFLRHIEASRITGIPLVIHS  130 (262)
Q Consensus       110 ~vF~~ql~lA~e~~~pv~iH~  130 (262)
                      .-+.+...+|..+++|+..||
T Consensus       273 t~~~kia~lA~a~gv~~~~H~  293 (352)
T cd03328         273 TGFLQAAALAAAHHVDLSAHC  293 (352)
T ss_pred             HHHHHHHHHHHHCCCEECCCC
T ss_conf             999999999998499045354


No 333
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=27.61  E-value=17  Score=17.35  Aligned_cols=64  Identities=20%  Similarity=0.271  Sum_probs=40.1

Q ss_pred             HHHHHCCCCCEEEC---HH----HHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC-----CC-EEECCCCC
Q ss_conf             76642044203300---02----33357999853100036753311214640234432103-----52-02023322
Q gi|254780215|r  117 EASRITGIPLVIHS---RS----ADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL-----GG-YISFTGMI  180 (262)
Q Consensus       117 ~lA~e~~~pv~iH~---r~----a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~-----g~-y~S~~g~i  180 (262)
                      ..|...+-|+++=.   |+    +---++.+|.+.-+....++++|+|-|+.+.++..++.     |. .|++.|..
T Consensus       151 ~~a~~~dapvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~tg~~vlGv~P~~  227 (486)
T COG1492         151 GVAEIADAPVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDESLLDPGLKWLEELTGVPVLGVLPYL  227 (486)
T ss_pred             EEEHHCCCCEEEEEEECCCCEEEEEEEHHEECCHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf             22023389889999511564541730212236876760014799963179878874599999986197467565255


No 334
>pfam11220 DUF3015 Protein of unknown function (DUF3015). This bacterial family of proteins has no known function.
Probab=27.45  E-value=47  Score=14.42  Aligned_cols=32  Identities=25%  Similarity=0.176  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHH
Q ss_conf             999999987289989---99999999999984256
Q gi|254780215|r  226 NTAKALAKEKDVSYE---DLMEETTKNALKLFSKI  257 (262)
Q Consensus       226 ~~~~~iA~i~~~~~e---ei~~~~~~N~~~~f~~~  257 (262)
                      +.+..+|++.+++.+   .+...+.+|+.++|..-
T Consensus        84 E~L~tlA~llgv~~~d~~~F~~~lq~NF~~If~s~  118 (144)
T pfam11220        84 EALTALAVLLGVQPEDRARFNAVTKENFSQIFPSE  118 (144)
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             30899999978988789999999999999868765


No 335
>TIGR00014 arsC arsenate reductase; InterPro: IPR006659   This entry describes a distinct clade, including ArsC itself, of the broader family of ArsC and related proteins. This clade is almost completely restricted to the proteobacteria. An anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773 . When expressed in Escherichia coli this ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. The pump is composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate. ; GO: 0008794 arsenate reductase (glutaredoxin) activity, 0006118 electron transport.
Probab=27.26  E-value=47  Score=14.40  Aligned_cols=37  Identities=19%  Similarity=0.269  Sum_probs=26.2

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH
Q ss_conf             446775533221110246789999876642044203300023
Q gi|254780215|r   92 GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA  133 (262)
Q Consensus        92 GEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a  133 (262)
                      -|-|||-   ...-+  .+..++.++--.=+++|+|||.-+|
T Consensus        65 ~eLgL~~---P~~~d--~~Ll~A~~~HP~LleRPiVv~~~~A  101 (114)
T TIGR00014        65 KELGLDD---PELSD--DELLDALVAHPILLERPIVVAGDKA  101 (114)
T ss_pred             CCCCCCC---CCCCH--HHHHHHHHHCHHHHCCCEEECCCCC
T ss_conf             0047898---88897--8999999836465259857659964


No 336
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=27.08  E-value=48  Score=14.38  Aligned_cols=42  Identities=21%  Similarity=0.196  Sum_probs=22.2

Q ss_pred             HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             999998699899991679877899999998557233211244544
Q gi|254780215|r   22 IMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPC   66 (262)
Q Consensus        22 i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~   66 (262)
                      ++.|.+.|| . + +-.+..+.++..+++.+.+..+..++-+.|.
T Consensus       108 l~~A~~~gv-~-i-~vDS~~El~~i~~~a~~~~~~~~i~lRinp~  149 (398)
T TIGR03099       108 LRRALAAGV-L-I-NVESLRELNRLAALSEALGLRARVAVRVNPD  149 (398)
T ss_pred             HHHHHHCEE-E-E-EECCHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf             998875605-9-9-6444688999999887659960699861688


No 337
>KOG3484 consensus
Probab=26.98  E-value=18  Score=17.16  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=16.9

Q ss_pred             HHHHHCCCCCCEEEEECCCCC
Q ss_conf             333210566717983078667
Q gi|254780215|r  189 RAIARGIPMDRVLVETDSPYI  209 (262)
Q Consensus       189 ~e~v~~iPldriLlETDsP~l  209 (262)
                      .+++|.+|.+|||.||..--+
T Consensus        26 k~~~K~vPk~rllsE~EWR~l   46 (91)
T KOG3484          26 KEVAKLVPKNRLLSETEWRGL   46 (91)
T ss_pred             HHHHHHCCCCCCCCHHHHHHH
T ss_conf             999963872112468888650


No 338
>PRK05595 replicative DNA helicase; Provisional
Probab=26.60  E-value=49  Score=14.32  Aligned_cols=130  Identities=22%  Similarity=0.201  Sum_probs=69.6

Q ss_pred             HHHHHHHHHH--HHHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEECCCCH--HH-------HHHHHCCCCEE
Q ss_conf             4678999987--664204420330002--33357999853100036753311214640--23-------44321035202
Q gi|254780215|r  108 QKVVFLRHIE--ASRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHCFSSSQ--KL-------ADICLELGGYI  174 (262)
Q Consensus       108 Q~~vF~~ql~--lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~FsG~~--~~-------~~~~l~~g~y~  174 (262)
                      -+..|.-++.  .|.+.++||.+-+-.  +..-+.+++.........    +--+|+.  +.       +.++-++..|+
T Consensus       213 GKTa~alnia~~~a~~~g~~V~~fSlEMs~~ql~~R~ls~~s~i~~~----~i~~g~l~~~~~~~~~~a~~~l~~~~l~i  288 (444)
T PRK05595        213 GKTTFALNIAEYAALREGKSVVIFSLEMSKEQLAYKLLCSEANVDML----RLRTGNLEDKDWENIARASGPLAAAKIYI  288 (444)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             80799999999999866993799958899999999999964698844----23268979999999999999985489705


Q ss_pred             ECCCCCCHHH-HHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             0233221133-3223333210566717983078667877----768875882449999999998728998999999
Q gi|254780215|r  175 SFTGMITFPK-YDALRAIARGIPMDRVLVETDSPYIVPV----SCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEE  245 (262)
Q Consensus       175 S~~g~i~~~~-~~~~~e~v~~iPldriLlETDsP~l~p~----~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~  245 (262)
                      -=++.++-.. ..+.|.+.+.-+++-+++  |  |+--.    ..+.+..+-+.|..-+..+|+-.++++--+++.
T Consensus       289 ~d~~~~ti~~i~~~~r~~~~~~~~~liii--D--YlqLi~~~~~~~~r~~ev~~isr~LK~lAkel~ipvi~lsQL  360 (444)
T PRK05595        289 DDTAGVSVMEMRSKCRRLKIEHGIDLILI--D--YLQLMSGGKSSESRQQEVSEISRSIKALAKEMECPVIALSQL  360 (444)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEE--E--HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf             48999648999999999998739998998--2--376357898888899999999999999999969979997026


No 339
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an 
Probab=26.58  E-value=49  Score=14.32  Aligned_cols=106  Identities=16%  Similarity=0.130  Sum_probs=61.7

Q ss_pred             CCHHHHHHHHHHCC---CCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEC
Q ss_conf             26899999999869---989999167987789999999855723321124454433446788998853100133321004
Q gi|254780215|r   16 EDRHDVIMRAHQAN---VLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIG   92 (262)
Q Consensus        16 ~d~~~~i~~a~~~g---v~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIG   92 (262)
                      ..+.+++++.+..|   -+-+|-+|-.-+++-.+..+.++|.-+. .++-+.|.+.   ++.-...+..+        +.
T Consensus        43 ~~l~~l~~~~r~~~~~~YDCiv~vSGGkDS~y~~~~l~~~~gl~p-L~vt~d~~~~---t~~g~~Ni~~l--------~~  110 (343)
T TIGR03573        43 KELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKKKLGLNP-LLVTVDPGWN---TELGVKNLNNL--------IK  110 (343)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCE-EEEEECCCCC---CHHHHHHHHHH--------HH
T ss_conf             999999999971489988689868877289999999999829925-9998359877---98999999999--------98


Q ss_pred             CCCCCCCCCCC----CCHHH---------------HHHHHHHHHHHHHCCCCCEEECHHH
Q ss_conf             46775533221----11024---------------6789999876642044203300023
Q gi|254780215|r   93 ETGLDRYHNAH----TIEEQ---------------KVVFLRHIEASRITGIPLVIHSRSA  133 (262)
Q Consensus        93 EiGLD~~~~~~----~~e~Q---------------~~vF~~ql~lA~e~~~pv~iH~r~a  133 (262)
                      ..|+|...-..    -++.|               ..+|..-+++|.+++.|+++---..
T Consensus       111 ~lgvD~i~~~~n~~~~k~l~k~~~~~~gd~~~~~~~~i~~~~~~iA~k~~IplIi~Gen~  170 (343)
T TIGR03573       111 KLGFDLHTITINPETFRKLQRAYFKKVGDPEWPQDHAIFASVYQVALKFNIPLIIWGENI  170 (343)
T ss_pred             HCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             369985874699999999999999866894699999999999999998199989975670


No 340
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=26.36  E-value=49  Score=14.29  Aligned_cols=63  Identities=11%  Similarity=0.052  Sum_probs=29.2

Q ss_pred             EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCC----CCCCCCCCCCCCC
Q ss_conf             6861388875652268999999998699899991679877899999998557----2332112445443
Q gi|254780215|r    3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYP----SSIFCSVGTHPCH   67 (262)
Q Consensus         3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p----~~i~~a~GiHP~~   67 (262)
                      +|+|+|++.--....+-+.|.+..+..-..+|.....-  -....++.+..+    +.-.-.+|+||..
T Consensus        61 VDthvh~s~cm~~k~LL~FIk~k~~~~pd~vV~~~dgk--~~TL~evfe~l~l~~~dltvd~L~v~a~~  127 (496)
T cd01319          61 VDTHVHHSACMNQKHLLRFIKKKLRTEPDEVVIFRDGK--KLTLKEVFDSLKLTAYDLSVDTLDVHADR  127 (496)
T ss_pred             EECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC--EEEHHHHHHHCCCCHHHCCCCCCCCCCCC
T ss_conf             21454230278989999999999972999489868997--50099999863998443721001514376


No 341
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=26.28  E-value=49  Score=14.32  Aligned_cols=22  Identities=23%  Similarity=0.551  Sum_probs=9.3

Q ss_pred             CCCCEECCCCHHH--HHHHHCCCC
Q ss_conf             5331121464023--443210352
Q gi|254780215|r  151 PFVIHCFSSSQKL--ADICLELGG  172 (262)
Q Consensus       151 ~~i~H~FsG~~~~--~~~~l~~g~  172 (262)
                      ++++||-+|.-+.  ++.+.++||
T Consensus        68 ~ivv~C~~G~RS~~aa~~L~~~G~   91 (109)
T cd01533          68 PIVVNCAGRTRSIIGAQSLINAGL   91 (109)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC
T ss_conf             599988998499999999998699


No 342
>cd01137 PsaA Metal binding protein PsaA.  These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.21  E-value=49  Score=14.28  Aligned_cols=11  Identities=0%  Similarity=0.314  Sum_probs=5.3

Q ss_pred             EEEECCCHHHH
Q ss_conf             99916798778
Q gi|254780215|r   33 MIAIAIKVKDF   43 (262)
Q Consensus        33 ~i~~~~~~~~~   43 (262)
                      ++.+|...+.|
T Consensus        70 iv~~G~~lE~~   80 (287)
T cd01137          70 ILYNGLNLEPW   80 (287)
T ss_pred             EEECCCCCHHH
T ss_conf             99858874178


No 343
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=26.15  E-value=49  Score=14.27  Aligned_cols=154  Identities=17%  Similarity=0.216  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC----CCHHHHHHHHHHHHH
Q ss_conf             8999999985572332112445443344678899885310013332100446775533221----110246789999876
Q gi|254780215|r   43 FVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAH----TIEEQKVVFLRHIEA  118 (262)
Q Consensus        43 ~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~----~~e~Q~~vF~~ql~l  118 (262)
                      .....+-+-..++.|-.++|--|-.+   .++.++.|.++.+.- -+ .=|.||--..+.+    .+..--..|..-+.-
T Consensus       102 Lre~ye~aL~~~~VVGLsIgTRPDCl---pd~VldlL~e~~~r~-~v-WvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r  176 (312)
T COG1242         102 LREMYEQALSEAGVVGLSIGTRPDCL---PDDVLDLLAEYNKRY-EV-WVELGLQTAHDKTLKRINRGHDFACYVDAVKR  176 (312)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCC---CHHHHHHHHHHHHHE-EE-EEEECCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99999997275880477505899888---189999999986445-78-87745305558999987624544999999999


Q ss_pred             HHHCCCCCEEECHH-----HHHHHH---HHHHHHHHCCCCCC-CCEECCCCHHHHHHHHCCCCE-EECCCCCCHHHHHHH
Q ss_conf             64204420330002-----333579---99853100036753-311214640234432103520-202332211333223
Q gi|254780215|r  119 SRITGIPLVIHSRS-----ADDDMA---AILQEEMKKGPFPF-VIHCFSSSQKLADICLELGGY-ISFTGMITFPKYDAL  188 (262)
Q Consensus       119 A~e~~~pv~iH~r~-----a~~~~l---~iL~~~~~~~~~~~-i~H~FsG~~~~~~~~l~~g~y-~S~~g~i~~~~~~~~  188 (262)
                      +++.|.-|.-|.-.     ..++++   +++......+ .+. .+|--.|+ .+++.+-+-.+. .|...-     -..+
T Consensus       177 ~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~G-IKlH~LhvvkgT-~m~k~Y~~G~l~~ls~eeY-----v~~~  249 (312)
T COG1242         177 LRKRGIKVCTHLINGLPGETRDEMLETAKIVAELGVDG-IKLHPLHVVKGT-PMEKMYEKGRLKFLSLEEY-----VELV  249 (312)
T ss_pred             HHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCE-EEEEEEEEECCC-HHHHHHHCCCCEECCHHHH-----HHHH
T ss_conf             99749749888840798888899999999998668753-888878886387-5999997188655459999-----9999


Q ss_pred             HHHHHCCCCCCEE--EEECCCC
Q ss_conf             3332105667179--8307866
Q gi|254780215|r  189 RAIARGIPMDRVL--VETDSPY  208 (262)
Q Consensus       189 ~e~v~~iPldriL--lETDsP~  208 (262)
                      .+.++.+|.+-+.  +--|+|-
T Consensus       250 ~d~le~lpp~vviHRitgd~pr  271 (312)
T COG1242         250 CDQLEHLPPEVVIHRITGDAPR  271 (312)
T ss_pred             HHHHHHCCCCEEEEEECCCCCC
T ss_conf             9999748932699970378985


No 344
>COG1590 Uncharacterized conserved protein [Function unknown]
Probab=26.09  E-value=50  Score=14.26  Aligned_cols=96  Identities=20%  Similarity=0.223  Sum_probs=57.9

Q ss_pred             CCCCE-EECHHHHHHHHHHHHHHHHC----CCCCCCCEECCCCHHHHHHHHCCCCEEEC--CCCCCHHHHHHHHHHHHCC
Q ss_conf             44203-30002333579998531000----36753311214640234432103520202--3322113332233332105
Q gi|254780215|r  123 GIPLV-IHSRSADDDMAAILQEEMKK----GPFPFVIHCFSSSQKLADICLELGGYISF--TGMITFPKYDALRAIARGI  195 (262)
Q Consensus       123 ~~pv~-iH~r~a~~~~l~iL~~~~~~----~~~~~i~H~FsG~~~~~~~~l~~g~y~S~--~g~i~~~~~~~~~e~v~~i  195 (262)
                      .+++. -|-+-...++++.|+.....    .-.+.|+|-..-+.+.|+++++.+---||  ||             ++.+
T Consensus        65 s~wl~K~H~~~~~~ev~ealk~~~~~~iwl~~~ppIlHV~~r~~e~A~~L~~~a~~~GFK~Sg-------------I~si  131 (208)
T COG1590          65 SRWLGKWHRPISLDEVLEALKKAREGYIWLKVQPPILHVAARDLEAAKKLLNIARSCGFKHSG-------------IKSI  131 (208)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCEEEEEECCHHHHHHHHHHHHHCCCCCCC-------------EEEE
T ss_conf             789898427577889999997365656999832878998847678899999999862975345-------------2674


Q ss_pred             CCCCEEEEECCCCCCCCCC--CCCC-CCHHHHHHHHHHH
Q ss_conf             6671798307866787776--8875-8824499999999
Q gi|254780215|r  196 PMDRVLVETDSPYIVPVSC--QGKR-NEPAYVVNTAKAL  231 (262)
Q Consensus       196 PldriLlETDsP~l~p~~~--r~~~-n~P~~i~~~~~~i  231 (262)
                      -..|+++|-+++.-...|.  +|+. -.+.++...++..
T Consensus       132 s~~r~iVEI~~~ermdvpl~e~g~~~v~~eyl~~lv~~~  170 (208)
T COG1590         132 SQKRVIVEIRGTERMDVPLGEDGKILVDDEYLKFLVEIA  170 (208)
T ss_pred             CCCCEEEEECCCCEEEEEECCCCCEEECHHHHHHHHHHH
T ss_conf             377289997465225644057872997689999999999


No 345
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=25.89  E-value=50  Score=14.24  Aligned_cols=68  Identities=13%  Similarity=0.117  Sum_probs=44.3

Q ss_pred             HCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             22689999999986998999916798778999999985572332--112445443344678899885310
Q gi|254780215|r   15 DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIF--CSVGTHPCHAHEENEVLVDELVCL   82 (262)
Q Consensus        15 ~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~--~a~GiHP~~~~~~~~~~~~~l~~l   82 (262)
                      +.-++..++||.+-|+..++..+++-..-.+++++.+.--+.+.  .-.|+|-....+..++..+.|++.
T Consensus        13 ~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~er   82 (186)
T COG1751          13 DETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKER   82 (186)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEECCHHHHHHHHHC
T ss_conf             9999999998874486159998436578999998442673599998322655688520589999999970


No 346
>pfam03652 UPF0081 Uncharacterized protein family (UPF0081).
Probab=25.88  E-value=50  Score=14.24  Aligned_cols=70  Identities=20%  Similarity=0.229  Sum_probs=42.4

Q ss_pred             CCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHCCCCCEEEC-HHHHHHHHHHHHH
Q ss_conf             678899885310013332100446775533221--110246789999876642044203300-0233357999853
Q gi|254780215|r   71 ENEVLVDELVCLASHPRVVAIGETGLDRYHNAH--TIEEQKVVFLRHIEASRITGIPLVIHS-RSADDDMAAILQE  143 (262)
Q Consensus        71 ~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~--~~e~Q~~vF~~ql~lA~e~~~pv~iH~-r~a~~~~l~iL~~  143 (262)
                      ..+..++.+..++.+.++.+| =|||.+.-+.+  +...+.+-|...  |...+++||..+. |-.-.+..+.|.+
T Consensus        35 ~~~~~~~~i~~ii~e~~i~~i-VvGlP~~~dG~~~~~~~~v~~f~~~--L~~~~~i~v~~~DEr~TS~~A~~~l~~  107 (134)
T pfam03652        35 NGKPDLEELAELIKEWQPDGI-VVGLPLNMDGSEGEQTKRVRKFARR--LKKRFGLPVELVDERLTTVEAERILRE  107 (134)
T ss_pred             CCHHHHHHHHHHHHHHCCCEE-EEECCCCCCCCCCHHHHHHHHHHHH--HHHHHCCCEEEEECCCCHHHHHHHHHH
T ss_conf             855899999999998399989-9955899998808899999999999--998619986886343279999999997


No 347
>KOG1717 consensus
Probab=25.29  E-value=45  Score=14.54  Aligned_cols=28  Identities=14%  Similarity=0.368  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCEECCCCHH
Q ss_conf             33579998531000367533112146402
Q gi|254780215|r  134 DDDMAAILQEEMKKGPFPFVIHCFSSSQK  162 (262)
Q Consensus       134 ~~~~l~iL~~~~~~~~~~~i~H~FsG~~~  162 (262)
                      +.|.+.++.+.+.+ ..++++||+.|=..
T Consensus       237 fpEAIsfIdeArsk-~cgvLVHClaGISR  264 (343)
T KOG1717         237 FPEAISFIDEARSK-NCGVLVHCLAGISR  264 (343)
T ss_pred             HHHHHHHHHHHHCC-CCCEEEEEECCCCH
T ss_conf             28889998876415-77678765014540


No 348
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=25.27  E-value=51  Score=14.16  Aligned_cols=116  Identities=14%  Similarity=0.170  Sum_probs=59.1

Q ss_pred             CCHHHHHHHHHHCCCCEEEEECCCH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEC
Q ss_conf             2689999999986998999916798---7789999999855723321124454433446788998853100133321004
Q gi|254780215|r   16 EDRHDVIMRAHQANVLKMIAIAIKV---KDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIG   92 (262)
Q Consensus        16 ~d~~~~i~~a~~~gv~~~i~~~~~~---~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIG   92 (262)
                      +....+|+++...|+..++..|-+|   .|+..+.+.+++.+  ++.++  -. +..-.+++..+.|.+.-  -..+.  
T Consensus        50 ~e~~~~id~l~~~Gv~~v~~tGGEPllr~D~~ei~~~a~~~G--~~~~l--~T-NG~lit~~~a~~L~~~g--l~~v~--  120 (375)
T PRK05301         50 AEWIRVLREARALGVLQLHFSGGEPLLRKDLEELVAHARRLG--LYTNL--IT-SGVGLTEARLAALKAAG--LDHIQ--  120 (375)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCC--CEEEE--EE-CCCCCCHHHHHHHHHHC--CCEEE--
T ss_conf             999999999998699889961865245668999999999769--75899--60-67455799999998509--98899--


Q ss_pred             CCCCCCCC-CCCCCHHH-HHHHH---HHHHHHHHCCCCCEEEC---HHHHHHHHHHH
Q ss_conf             46775533-22111024-67899---99876642044203300---02333579998
Q gi|254780215|r   93 ETGLDRYH-NAHTIEEQ-KVVFL---RHIEASRITGIPLVIHS---RSADDDMAAIL  141 (262)
Q Consensus        93 EiGLD~~~-~~~~~e~Q-~~vF~---~ql~lA~e~~~pv~iH~---r~a~~~~l~iL  141 (262)
                       |-||-.. ...+.-.. ...|+   +.++.+++.+.|+.|.+   |.-.+++-+++
T Consensus       121 -vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~i~~ti~r~N~~~l~~i~  176 (375)
T PRK05301        121 -LSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYPLTLNAVIHRHNIDQIPRII  176 (375)
T ss_pred             -EECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHH
T ss_conf             -95677987787776378862999999999999749816999872305688899999


No 349
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type; InterPro: IPR004721   Dihydroorotase belongs to MEROPS peptidase family M38 (clan MJ), where it is classified as a non-peptidase homologue. DHOase catalyses the third step in the de novo biosynthesis of pyrimidine, the conversion of ureidosuccinic acid (N-carbamoyl-L-aspartate) into dihydroorotate. Dihydroorotase binds a zinc ion which is required for its catalytic activity .   In bacteria, DHOase is a dimer of identical chains of about 400 amino-acid residues (gene pyrC). In the metazoa, DHOase is part of a large multi-functional protein known as 'rudimentary' in Drosophila melanogaster and CAD in mammals and which catalyzes the first three steps of pyrimidine biosynthesis . The DHOase domain is located in the central part of this polyprotein. In yeast, DHOase is encoded by a monofunctional protein (gene URA4). However, a defective DHOase domain  is found in a multifunctional protein (gene URA2) that catalyzes the first two steps of pyrimidine biosynthesis.   The comparison of DHOase sequences from various sources shows  that there are two highly conserved regions. The first located in the N-terminal extremity contains two histidine residues suggested  to be involved in binding the zinc ion. The second is found in the C-terminal part. Members of this family of proteins are predicted to adopt a TIM barrel fold .   This family represents the homodimeric form of dihydroorotase 3.5.2.3 from EC. It is found in bacteria, plants and fungi; URA4 of yeast is a member of this group of sequences.  ; GO: 0004151 dihydroorotase activity, 0019856 pyrimidine base biosynthetic process.
Probab=25.27  E-value=51  Score=14.16  Aligned_cols=232  Identities=17%  Similarity=0.151  Sum_probs=111.2

Q ss_pred             EEEECCCCCHHHHCCHHHHHHHHHHCCCCEE-EEECCCH--HHHHHHHHHHHHCCCCCCCC-CCCCC----CCCCCCCHH
Q ss_conf             6861388875652268999999998699899-9916798--77899999998557233211-24454----433446788
Q gi|254780215|r    3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKM-IAIAIKV--KDFVPLIKLCQDYPSSIFCS-VGTHP----CHAHEENEV   74 (262)
Q Consensus         3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~-i~~~~~~--~~~~~~~~l~~~~p~~i~~a-~GiHP----~~~~~~~~~   74 (262)
                      +|.|.|+-+   ..-+..|+=...+.|+... |++.-.+  .+..+++++.++.-+ ..++ --.-|    +...+-+. 
T Consensus         8 ~D~HlHvRe---ga~lk~V~P~~~~~Gfs~A~iMPNL~pP~~~~~~~~~Y~~~il~-~~p~G~~f~pLMslYL~d~l~p-   82 (364)
T TIGR00856         8 DDWHLHVRE---GAMLKAVLPYTSEGGFSRAIIMPNLKPPVTTVDRAIEYRERILK-AVPAGGDFTPLMSLYLTDDLTP-   82 (364)
T ss_pred             CCEEEECCC---HHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCEEEEEECCCCCH-
T ss_conf             750653470---23552147731136514899778887774787889999999998-5558898562146641689898-


Q ss_pred             HHHHHHHHCCCCCCCEECCCCCCCCCCC-------CCCHHHHHHHHHHHHHHHHCCCCCEEECHH-----HHH-------
Q ss_conf             9988531001333210044677553322-------111024678999987664204420330002-----333-------
Q gi|254780215|r   75 LVDELVCLASHPRVVAIGETGLDRYHNA-------HTIEEQKVVFLRHIEASRITGIPLVIHSRS-----ADD-------  135 (262)
Q Consensus        75 ~~~~l~~l~~~~~~~aIGEiGLD~~~~~-------~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~-----a~~-------  135 (262)
                        ++|.+-.+..-+.|+     =+|...       ..-+...+.+..-|+-+.+.|+|+.||.-.     +.+       
T Consensus        83 --~el~~A~~~~~v~~~-----K~YPaG~TTNs~~Gv~~~~~~~~~~vL~~m~~~~l~L~~HgE~t~vhdgdkePI~~ld  155 (364)
T TIGR00856        83 --EELEEAKEKHAVRAV-----KLYPAGATTNSAAGVTDLLIEAILPVLEAMQKVGLPLLLHGEVTSVHDGDKEPIDILD  155 (364)
T ss_pred             --HHHHHHHHCCCEEEE-----EECCCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHC
T ss_conf             --899989754964899-----7258886205111687134678999999887629836631677765567887532103


Q ss_pred             ---HHHH-HHHHHHHC-CCCCCCC-EECCCCHHHHHHHHCC-----------CCE---------E--------ECCCCC-
Q ss_conf             ---5799-98531000-3675331-1214640234432103-----------520---------2--------023322-
Q gi|254780215|r  136 ---DMAA-ILQEEMKK-GPFPFVI-HCFSSSQKLADICLEL-----------GGY---------I--------SFTGMI-  180 (262)
Q Consensus       136 ---~~l~-iL~~~~~~-~~~~~i~-H~FsG~~~~~~~~l~~-----------g~y---------~--------S~~g~i-  180 (262)
                         -+++ +|+....+ +..|+|+ |+=   -+.+=++++-           -.|         |        |++|.. 
T Consensus       156 ~E~~f~~~~L~~L~~~fP~LkiilEH~t---~~~ai~~i~~~n~~vkkatdvk~aATlT~~HL~~~~d~l~~Gg~~Ph~f  232 (364)
T TIGR00856       156 REELFIEKVLEPLREKFPKLKIILEHIT---TEDAIKLIEDINNRVKKATDVKLAATLTPHHLLFTRDDLLGGGVNPHLF  232 (364)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEECC---CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             5467689998999862776418998529---8899999986400010121011310310778873078882598575011


Q ss_pred             CH---H--H-HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC----------CCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             11---3--3-3223333210566717983078667877768875----------88244999999999872899899999
Q gi|254780215|r  181 TF---P--K-YDALRAIARGIPMDRVLVETDSPYIVPVSCQGKR----------NEPAYVVNTAKALAKEKDVSYEDLME  244 (262)
Q Consensus       181 ~~---~--~-~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~----------n~P~~i~~~~~~iA~i~~~~~eei~~  244 (262)
                      |.   |  + .+.+.+++- =.-.|+.+=|||   +|.+...|.          |.|..++..++.- | ..=++|.+..
T Consensus       233 CkP~~K~~~d~~~L~~~a~-sg~P~~flGsDS---APH~~~~K~s~~G~CAG~ysa~~al~~~A~~F-E-~~NAL~~L~A  306 (364)
T TIGR00856       233 CKPILKRKKDQKALLKLAV-SGKPKFFLGSDS---APHARSKKESACGGCAGVYSAPIALPAYAEVF-E-EVNALENLEA  306 (364)
T ss_pred             CCCCCCCHHHHHHHHHHHH-HCCCCEEECCCC---CCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHH-H-HHCCHHHCCE
T ss_conf             6652468566899999987-179825526787---64212066444684610102778999999998-6-4060531463


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999842
Q gi|254780215|r  245 ETTKNALKLFS  255 (262)
Q Consensus       245 ~~~~N~~~~f~  255 (262)
                      =+..|...||+
T Consensus       307 F~S~~g~~fY~  317 (364)
T TIGR00856       307 FVSDNGPSFYG  317 (364)
T ss_pred             EEEECCCCCCC
T ss_conf             56522641025


No 350
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=24.93  E-value=52  Score=14.12  Aligned_cols=140  Identities=9%  Similarity=-0.017  Sum_probs=67.8

Q ss_pred             CHHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             68999999998699899991679-------8778999999985-572332112445443344678899885310013332
Q gi|254780215|r   17 DRHDVIMRAHQANVLKMIAIAIK-------VKDFVPLIKLCQD-YPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRV   88 (262)
Q Consensus        17 d~~~~i~~a~~~gv~~~i~~~~~-------~~~~~~~~~l~~~-~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~   88 (262)
                      -+...++...+.|+..++..|++       .++..++.+.+.+ -.+.+-.-.|+- .    .+.+..+ +.+.+.+-.+
T Consensus        23 ~l~~~v~~li~~Gv~gi~v~GstGE~~~Ls~eEr~~v~~~~v~~~~grvpvi~gvg-~----~t~~ai~-la~~A~~~Ga   96 (296)
T PRK03620         23 AYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVEACAGRVPVIAGAG-G----GTAQAIE-YAQAAERAGA   96 (296)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEECCC-C----CHHHHHH-HHHHHHHCCC
T ss_conf             99999999997799989968423134348999999999999998389735982577-5----3799999-9999998299


Q ss_pred             CEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH---HHHHHHHHHHHHCCCCCCCCEECCCCHHHHH
Q ss_conf             1004467755332211102467899998766420442033000233---3579998531000367533112146402344
Q gi|254780215|r   89 VAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD---DDMAAILQEEMKKGPFPFVIHCFSSSQKLAD  165 (262)
Q Consensus        89 ~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~---~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~  165 (262)
                      -||= +-=.||..    ..|..+++..-++|...++|+++.-|...   .+++.-|.+.  .+...+|= --+|+...+.
T Consensus        97 dai~-v~pPyy~~----~~~~~l~~~~~~ia~a~~lPi~lYn~~~~~~~~~~l~~L~~~--~pnivgiK-dss~d~~~~~  168 (296)
T PRK03620         97 DGIL-LLPPYLTE----APQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAER--CPNLIGFK-DGVGDIELMV  168 (296)
T ss_pred             CEEE-ECCCCCCC----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH--CCCEEEEE-ECCCCHHHHH
T ss_conf             9899-66986789----999999999999998318997751788877699999999972--89889999-5868899999


Q ss_pred             HHHCC
Q ss_conf             32103
Q gi|254780215|r  166 ICLEL  170 (262)
Q Consensus       166 ~~l~~  170 (262)
                      +++..
T Consensus       169 ~~~~~  173 (296)
T PRK03620        169 RITRA  173 (296)
T ss_pred             HHHHH
T ss_conf             99997


No 351
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840    This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=24.61  E-value=53  Score=14.08  Aligned_cols=39  Identities=8%  Similarity=-0.079  Sum_probs=17.8

Q ss_pred             HHCCCCEEEEECCCHHHHHH-HHHHHHHCCCCCCCCCCCC
Q ss_conf             98699899991679877899-9999985572332112445
Q gi|254780215|r   26 HQANVLKMIAIAIKVKDFVP-LIKLCQDYPSSIFCSVGTH   64 (262)
Q Consensus        26 ~~~gv~~~i~~~~~~~~~~~-~~~l~~~~p~~i~~a~GiH   64 (262)
                      ++.-+++++..|-.|-=+.. ...+.++.-+++-..+|+|
T Consensus        60 R~~ll~gVVitGGEptlQ~~eL~d~~~~v~~nlGf~vkLd   99 (220)
T TIGR02495        60 RQGLLDGVVITGGEPTLQAGELGDFLREVRENLGFEVKLD   99 (220)
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             1342105787287532367778999999998659278560


No 352
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=24.55  E-value=53  Score=14.08  Aligned_cols=11  Identities=0%  Similarity=0.099  Sum_probs=4.7

Q ss_pred             CCHHHHHHHHC
Q ss_conf             64023443210
Q gi|254780215|r  159 SSQKLADICLE  169 (262)
Q Consensus       159 G~~~~~~~~l~  169 (262)
                      .+.+.++.+++
T Consensus       117 T~~~~l~~~l~  127 (220)
T PRK08883        117 TPLAHLEYIMD  127 (220)
T ss_pred             CCHHHHHHHHH
T ss_conf             98799999997


No 353
>KOG2368 consensus
Probab=24.50  E-value=37  Score=15.08  Aligned_cols=81  Identities=23%  Similarity=0.401  Sum_probs=44.6

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEE-CCCC------HHHHHHHHCCCCE-EE
Q ss_conf             11024678999987664204420330002333579998531000367533112-1464------0234432103520-20
Q gi|254780215|r  104 TIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHC-FSSS------QKLADICLELGGY-IS  175 (262)
Q Consensus       104 ~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~-FsG~------~~~~~~~l~~g~y-~S  175 (262)
                      +.|.-..-|+.-+..|.+.|.|+-    +           |     ..+++-| |.|.      .+..+++.++||| +|
T Consensus       128 tiees~~rf~~v~kaA~~~ni~vR----G-----------Y-----VScvvGCPyeG~v~P~kVa~V~k~ly~mGCyEiS  187 (316)
T KOG2368         128 TIEESLKRFMEVLKAAQEHNIRVR----G-----------Y-----VSCVVGCPYEGAVQPSKVAEVVKKLYEMGCYEIS  187 (316)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCC----E-----------E-----EEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             489999999999999997497500----3-----------7-----8888658766874889999999999847867973


Q ss_pred             CCCCCCH---HH-HHHHHHHHHCCCCCCEEEEE
Q ss_conf             2332211---33-32233332105667179830
Q gi|254780215|r  176 FTGMITF---PK-YDALRAIARGIPMDRVLVET  204 (262)
Q Consensus       176 ~~g~i~~---~~-~~~~~e~v~~iPldriLlET  204 (262)
                      .+-.|--   .. .+-+..+.+.+|.+.|-+--
T Consensus       188 LGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~  220 (316)
T KOG2368         188 LGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHC  220 (316)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             266104689505899999998747878841042


No 354
>PRK13133 consensus
Probab=24.46  E-value=53  Score=14.07  Aligned_cols=13  Identities=8%  Similarity=0.046  Sum_probs=5.8

Q ss_pred             CCCHHHHHHHHCC
Q ss_conf             4640234432103
Q gi|254780215|r  158 SSSQKLADICLEL  170 (262)
Q Consensus       158 sG~~~~~~~~l~~  170 (262)
                      +.+.+-++...+.
T Consensus       159 tt~~eRi~~i~~~  171 (267)
T PRK13133        159 VTPPERIEFIDSL  171 (267)
T ss_pred             CCCHHHHHHHHHC
T ss_conf             9999999999842


No 355
>PRK13119 consensus
Probab=24.39  E-value=53  Score=14.06  Aligned_cols=15  Identities=13%  Similarity=0.127  Sum_probs=6.7

Q ss_pred             ECCCCHHHHHHHHCC
Q ss_conf             214640234432103
Q gi|254780215|r  156 CFSSSQKLADICLEL  170 (262)
Q Consensus       156 ~FsG~~~~~~~~l~~  170 (262)
                      +=+.+.+-+++..+.
T Consensus       153 aPtt~~~Ri~~i~~~  167 (261)
T PRK13119        153 APTTTEDRIKTIAEL  167 (261)
T ss_pred             CCCCCHHHHHHHHHH
T ss_conf             799989999999972


No 356
>PRK10859 putative transglycosylase; Provisional
Probab=24.33  E-value=53  Score=14.05  Aligned_cols=15  Identities=13%  Similarity=0.144  Sum_probs=6.7

Q ss_pred             HHHHHHHCCCCEEEE
Q ss_conf             999999869989999
Q gi|254780215|r   21 VIMRAHQANVLKMIA   35 (262)
Q Consensus        21 ~i~~a~~~gv~~~i~   35 (262)
                      -+++-++.|+-.++.
T Consensus        35 ~L~~I~~rG~LrV~T   49 (507)
T PRK10859         35 QIAAIQARGELRVST   49 (507)
T ss_pred             HHHHHHHCCEEEEEE
T ss_conf             799999789689999


No 357
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=24.31  E-value=53  Score=14.05  Aligned_cols=117  Identities=19%  Similarity=0.115  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHCCC----CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-HHHHHHHHHHHHC
Q ss_conf             8899885310013----3321004467755332211102467899998766420442033000233-3579998531000
Q gi|254780215|r   73 EVLVDELVCLASH----PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD-DDMAAILQEEMKK  147 (262)
Q Consensus        73 ~~~~~~l~~l~~~----~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~-~~~l~iL~~~~~~  147 (262)
                      ++.++.+.+.+..    ...+++|=+-    ....+.|....+-++-|++..+++-|+.|.+..+- ..-+++|.+....
T Consensus        66 ~n~~e~l~~el~~~~~k~~~i~is~~T----Dpyqp~E~~~~ltR~ilei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~  141 (297)
T COG1533          66 ENLLELLERELRKPGPKRTVIAISSVT----DPYQPIEKEYRLTRKILEILLKYGFPVSIVTKSALVLRDLDLLLELAER  141 (297)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCC----CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHCCC
T ss_conf             569999998875246785599985468----8885647787899999999885399679997774101027899840112


Q ss_pred             CCCCCCCEE-----------------CCCCHHHHHHHHCCCC--EEECCCCCCHHHHHHHHHHHH
Q ss_conf             367533112-----------------1464023443210352--020233221133322333321
Q gi|254780215|r  148 GPFPFVIHC-----------------FSSSQKLADICLELGG--YISFTGMITFPKYDALRAIAR  193 (262)
Q Consensus       148 ~~~~~i~H~-----------------FsG~~~~~~~~l~~g~--y~S~~g~i~~~~~~~~~e~v~  193 (262)
                      ....+-+--                 ...-.+.++++.+.|+  ++.++|.+-+.+..++.+++.
T Consensus       142 ~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v~v~PIiP~~~d~e~e~~l~  206 (297)
T COG1533         142 GKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGLFVAPIIPGLNDEELERILE  206 (297)
T ss_pred             CCEEEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf             65189999516848889865899969899999999999879848999855307887588999999


No 358
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=24.16  E-value=54  Score=14.03  Aligned_cols=31  Identities=13%  Similarity=0.161  Sum_probs=16.9

Q ss_pred             HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf             999999869989999167987789999999855
Q gi|254780215|r   21 VIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDY   53 (262)
Q Consensus        21 ~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~   53 (262)
                      -++.|.+.|+..+  +-.+..+.+++.+++.+.
T Consensus        89 ~l~~a~~~gv~~i--~~Ds~~El~~i~~~a~~~  119 (382)
T cd06839          89 ELRRAIEAGIGTI--NVESLEELERIDALAEEH  119 (382)
T ss_pred             HHHHHHHCCCCEE--ECCCHHHHHHHHHHHHHC
T ss_conf             9999998399576--438679999999999863


No 359
>pfam07745 Glyco_hydro_53 Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.
Probab=24.15  E-value=54  Score=14.03  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=20.2

Q ss_pred             HHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf             223333210566717983078667
Q gi|254780215|r  186 DALRAIARGIPMDRVLVETDSPYI  209 (262)
Q Consensus       186 ~~~~e~v~~iPldriLlETDsP~l  209 (262)
                      ..+.++...+..+-+++||.-||-
T Consensus       219 ~~l~~l~~~y~K~v~VvEtayp~t  242 (332)
T pfam07745       219 TNLKDMASRYGKPVMVVETAYPWT  242 (332)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             999999999789679998168775


No 360
>KOG2792 consensus
Probab=24.02  E-value=40  Score=14.91  Aligned_cols=68  Identities=12%  Similarity=0.140  Sum_probs=39.4

Q ss_pred             HHHHHHHHHH-HHHHCCCC---CEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHC-CCCEEECCC
Q ss_conf             4678999987-66420442---03300023335799985310003675331121464023443210-352020233
Q gi|254780215|r  108 QKVVFLRHIE-ASRITGIP---LVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLE-LGGYISFTG  178 (262)
Q Consensus       108 Q~~vF~~ql~-lA~e~~~p---v~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~-~g~y~S~~g  178 (262)
                      |.+-+.+-++ +-.+.+.|   |.|-| +-++|..+.+.+|......+  +=.+||+.+++++..+ .-+|||=++
T Consensus       158 ELeKm~~~Vd~i~~~~~~~~~PlFIsv-DPeRD~~~~~~eY~~eF~pk--llGLTGT~eqvk~vak~yRVYfs~gp  230 (280)
T KOG2792         158 ELEKMSAVVDEIEAKPGLPPVPLFISV-DPERDSVEVVAEYVSEFHPK--LLGLTGTTEQVKQVAKKYRVYFSTGP  230 (280)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEE-CCCCCCHHHHHHHHHHCCHH--HHCCCCCHHHHHHHHHHHEEEECCCC
T ss_conf             999999999998525899862259984-76648799999999850866--50566889999999988078614689


No 361
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=23.98  E-value=54  Score=14.01  Aligned_cols=45  Identities=27%  Similarity=0.219  Sum_probs=20.4

Q ss_pred             HHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCE-EECCCCCCH
Q ss_conf             999853100036753311214640234432103520-202332211
Q gi|254780215|r  138 AAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGY-ISFTGMITF  182 (262)
Q Consensus       138 l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y-~S~~g~i~~  182 (262)
                      ++++++.......++|.-.==-+++++++.+++|.| +-+++.||.
T Consensus       166 ~~lv~~l~~~~~~pvIaEGri~tPe~a~~a~~~GA~aVVVGsAITr  211 (219)
T cd04729         166 FELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAITR  211 (219)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             8999999997599399706989999999999839989998954388


No 362
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=23.88  E-value=54  Score=13.99  Aligned_cols=99  Identities=18%  Similarity=0.251  Sum_probs=41.8

Q ss_pred             HHCCCCCEEEC-HHHHHHHHHHHHHHHHCCCCCCCCEECCC--CHHHHHHHHCCCCEEECC--CCCCHHHHHHHHHHHHC
Q ss_conf             42044203300-02333579998531000367533112146--402344321035202023--32211333223333210
Q gi|254780215|r  120 RITGIPLVIHS-RSADDDMAAILQEEMKKGPFPFVIHCFSS--SQKLADICLELGGYISFT--GMITFPKYDALRAIARG  194 (262)
Q Consensus       120 ~e~~~pv~iH~-r~a~~~~l~iL~~~~~~~~~~~i~H~FsG--~~~~~~~~l~~g~y~S~~--g~i~~~~~~~~~e~v~~  194 (262)
                      +..++|+-+|. +.--...++-+.   ..+...+.+|+=+-  ..+.++...+.|+..|+.  |.-   .-..+...+..
T Consensus        54 ~~t~~~~DvHLMv~~P~~~i~~~~---~~g~d~i~~H~E~~~~~~~~i~~ik~~g~k~GlAlnP~T---~~~~l~~~l~~  127 (201)
T pfam00834        54 PLTELPLDVHLMVEEPDRIIPDFA---EAGADIISFHAEASDHPHRTIQLIKEAGAKAGLVLNPAT---PLDAIEYLLDD  127 (201)
T ss_pred             HCCCCCEEEEEEEECHHHHHHHHH---HCCCCEEEECHHHHHCHHHHHHHHHHCCCEEEEEECCCC---CCHHHHHHHHH
T ss_conf             638996389999837766399998---739988997544413799999999864972688856998---60288876742


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             56671798307866787776887588244999999999872
Q gi|254780215|r  195 IPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEK  235 (262)
Q Consensus       195 iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~  235 (262)
                        .|.+|+=|=-|-     +.|+.-    ++.+.+++.++|
T Consensus       128 --iD~VLvMtV~PG-----f~GQ~f----~~~~l~KI~~lr  157 (201)
T pfam00834       128 --LDLVLLMSVNPG-----FGGQSF----IPSVLPKIRKVR  157 (201)
T ss_pred             --CCEEEEEEECCC-----CCCCCC----CHHHHHHHHHHH
T ss_conf             --798999886689-----887645----677999999999


No 363
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain; InterPro: IPR011947    This entry represents the phosphatase domain of the human RNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi  and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs  and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3 . This domain is related to domains found in the human NLI interacting factor-like phosphatases. ; GO: 0004721 phosphoprotein phosphatase activity, 0005634 nucleus.
Probab=23.64  E-value=34  Score=15.34  Aligned_cols=25  Identities=20%  Similarity=0.478  Sum_probs=21.5

Q ss_pred             CCCEECC-CCHHHHHHHHCC----CCEEEC
Q ss_conf             3311214-640234432103----520202
Q gi|254780215|r  152 FVIHCFS-SSQKLADICLEL----GGYISF  176 (262)
Q Consensus       152 ~i~H~Fs-G~~~~~~~~l~~----g~y~S~  176 (262)
                      .-+|-|| |+...|++.+++    |.|||=
T Consensus        85 yemhiYTmG~R~YA~~iakliDP~~~yFg~  114 (170)
T TIGR02250        85 YEMHIYTMGTRAYAQAIAKLIDPDGKYFGD  114 (170)
T ss_pred             CEEEEEECCCHHHHHHHHHHCCCCCCCCCC
T ss_conf             056654228867999999860887221488


No 364
>TIGR00734 hisAF_rel hisA/hisF family protein; InterPro: IPR004650   This family of proteins has so far been found in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. Proteins are homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. However, the function of proteins in this group is unknown..
Probab=23.54  E-value=55  Score=13.95  Aligned_cols=151  Identities=14%  Similarity=0.082  Sum_probs=65.7

Q ss_pred             HCCHHHHHHHHHHCCCCEEEEEC-----CCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCC---------------CCH
Q ss_conf             22689999999986998999916-----798778999999985572332112445-443344---------------678
Q gi|254780215|r   15 DEDRHDVIMRAHQANVLKMIAIA-----IKVKDFVPLIKLCQDYPSSIFCSVGTH-PCHAHE---------------ENE   73 (262)
Q Consensus        15 ~~d~~~~i~~a~~~gv~~~i~~~-----~~~~~~~~~~~l~~~~p~~i~~a~GiH-P~~~~~---------------~~~   73 (262)
                      .++..+++.-.++.|=..+-+.-     -+=..++-+.++.+..|+.| .=+|+- |.....               .+-
T Consensus        35 ss~P~~~ak~~~e~gar~iYiADLd~I~G~GdNf~~~~~~~~~~~e~I-~D~GvrS~EdLE~~~f~l~~~~R~vVaTETl  113 (230)
T TIGR00734        35 SSDPVDVAKALKEIGARSIYIADLDAIVGLGDNFELVKKVDKVVEELI-VDIGVRSREDLETLKFVLEKDDRVVVATETL  113 (230)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHCCHHE-EECCCCCHHHHHHCCCCCCCCCCEEEEECCH
T ss_conf             888789999998638846863410022268854899988632220012-4135568454431036756356368862450


Q ss_pred             HHHHHHHHHC-CC--CCCCEECCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCC---CCE-EECHHHHH-HHHHHHH
Q ss_conf             8998853100-13--3321004467755332---21110246789999876642044---203-30002333-5799985
Q gi|254780215|r   74 VLVDELVCLA-SH--PRVVAIGETGLDRYHN---AHTIEEQKVVFLRHIEASRITGI---PLV-IHSRSADD-DMAAILQ  142 (262)
Q Consensus        74 ~~~~~l~~l~-~~--~~~~aIGEiGLD~~~~---~~~~e~Q~~vF~~ql~lA~e~~~---pv~-iH~r~a~~-~~l~iL~  142 (262)
                      +..+.+++.. +.  .++|    +-||+...   ...++   ..++.-.++-..|++   -+. ||++++.+ -=.++|+
T Consensus       114 ~~~ell~e~~rnyPPer~V----VSlDfK~~~L~~~~l~---~~leevrd~l~~f~~~GlI~LdI~sVGt~~G~n~ell~  186 (230)
T TIGR00734       114 DSTELLKEILRNYPPERIV----VSLDFKEKRLDASSLE---ESLEEVRDLLNSFDLDGLIVLDISSVGTSKGVNLELLK  186 (230)
T ss_pred             HHHHHHHHHHHCCCCCCEE----EEEEEECCCCCCCCCH---HHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf             4678999986158986379----9984005520001304---56888875306631013798336330567787888999


Q ss_pred             HHHHCCCCCCCCEECCCCHHHHHHHHCCCCE
Q ss_conf             3100036753311214640234432103520
Q gi|254780215|r  143 EEMKKGPFPFVIHCFSSSQKLADICLELGGY  173 (262)
Q Consensus       143 ~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y  173 (262)
                      ........++++=.==-..|.++...++|+-
T Consensus       187 ~~l~l~e~PV~~GGGi~g~EdlEl~~~mGv~  217 (230)
T TIGR00734       187 KVLELSERPVILGGGIKGVEDLELLKEMGVS  217 (230)
T ss_pred             HHHHHHCCCEEECCCCCCCCHHHHHHHCCCC
T ss_conf             8864424871406873675107888856876


No 365
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II; InterPro: IPR006411   Members of this family are class II examples of the glycolytic enzyme fructose-bisphosphate aldolase (FBA). They represent one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterised proteins. This family is well-conserved and includes characterised FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum.; GO: 0004332 fructose-bisphosphate aldolase activity, 0006096 glycolysis.
Probab=23.25  E-value=33  Score=15.41  Aligned_cols=23  Identities=35%  Similarity=0.457  Sum_probs=8.9

Q ss_pred             CCCCCCEECCCC-HHHHHHHHCCC
Q ss_conf             675331121464-02344321035
Q gi|254780215|r  149 PFPFVIHCFSSS-QKLADICLELG  171 (262)
Q Consensus       149 ~~~~i~H~FsG~-~~~~~~~l~~g  171 (262)
                      |.-.|||.=||| .+..++.+++|
T Consensus       265 P~~fVFHGGSGSt~~Ei~ea~~yG  288 (365)
T TIGR01520       265 PLFFVFHGGSGSTKQEIEEALSYG  288 (365)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHCC
T ss_conf             744165377577289997653368


No 366
>pfam05706 CDKN3 Cyclin-dependent kinase inhibitor 3 (CDKN3). This family consists of cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner.
Probab=23.19  E-value=51  Score=14.20  Aligned_cols=10  Identities=20%  Similarity=0.228  Sum_probs=6.3

Q ss_pred             CCCCCEECCC
Q ss_conf             7533112146
Q gi|254780215|r  150 FPFVIHCFSS  159 (262)
Q Consensus       150 ~~~i~H~FsG  159 (262)
                      .++++||+.|
T Consensus       134 rk~lihc~gg  143 (207)
T pfam05706       134 RKTLIHSVGG  143 (207)
T ss_pred             CEEEEEEECC
T ss_conf             8489998446


No 367
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321   These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=23.12  E-value=56  Score=13.90  Aligned_cols=61  Identities=23%  Similarity=0.389  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHHHC-CCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE--EECHHHHHHHHHHHHH
Q ss_conf             46788998853100-13332100446775533221110246789999876642044203--3000233357999853
Q gi|254780215|r   70 EENEVLVDELVCLA-SHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLV--IHSRSADDDMAAILQE  143 (262)
Q Consensus        70 ~~~~~~~~~l~~l~-~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~--iH~r~a~~~~l~iL~~  143 (262)
                      .++....+-|+.-+ ++|.|+=|||+     ||.++.+   .++     -|.|.|--|+  +|+.+|-+-+=+|+.-
T Consensus       184 ~DT~sF~~ALraALReDPDvILiGE~-----RD~ET~~---~AL-----~AAETGHLV~gTLHTnsA~~ti~RIid~  247 (350)
T TIGR01420       184 LDTLSFANALRAALREDPDVILIGEM-----RDLETVE---LAL-----TAAETGHLVFGTLHTNSAAKTIERIIDV  247 (350)
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEEECC-----CCHHHHH---HHH-----HHHHHCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             75457999976841028988998255-----6278999---999-----8742131567666642388876777425


No 368
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=22.97  E-value=57  Score=13.88  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=12.5

Q ss_pred             CCEECCCCHHHHHHHHCC--C--CEEECCC
Q ss_conf             311214640234432103--5--2020233
Q gi|254780215|r  153 VIHCFSSSQKLADICLEL--G--GYISFTG  178 (262)
Q Consensus       153 i~H~FsG~~~~~~~~l~~--g--~y~S~~g  178 (262)
                      -+=+-+-+.+-+++..+.  |  ||+|..|
T Consensus       134 ~lvsPtt~~~ri~~i~~~s~gfiY~vs~~G  163 (242)
T cd04724         134 FLVAPTTPDERIKKIAELASGFIYYVSRTG  163 (242)
T ss_pred             EEECCCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf             996898878999999974798499985777


No 369
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084   Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea..
Probab=22.83  E-value=48  Score=14.38  Aligned_cols=165  Identities=16%  Similarity=0.231  Sum_probs=88.9

Q ss_pred             CCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEC-------CCCCCCCCCCCCCHH--
Q ss_conf             798778999999985572-3321124454433446788998853100133321004-------467755332211102--
Q gi|254780215|r   38 IKVKDFVPLIKLCQDYPS-SIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIG-------ETGLDRYHNAHTIEE--  107 (262)
Q Consensus        38 ~~~~~~~~~~~l~~~~p~-~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIG-------EiGLD~~~~~~~~e~--  107 (262)
                      .++-+-+++++.|++..- =|+|.+|    |.++.     ..+.+.+....|+-||       .-||=.    +.++.  
T Consensus        57 esYL~~dkil~~Ak~tGA~AI~PGYG----FLSEN-----A~FA~~C~~aGI~FvGPtpe~ir~fGLKH----tAR~lA~  123 (1226)
T TIGR02712        57 ESYLDIDKILAIAKKTGAQAIHPGYG----FLSEN-----AAFAEACEAAGIVFVGPTPEQIRKFGLKH----TARELAE  123 (1226)
T ss_pred             HHHCCHHHHHHHHHHCCCCEEECCCC----CCCCC-----HHHHHHHHHCCCEEECCCHHHHHHCCCCH----HHHHHHH
T ss_conf             22214789999997558938745887----23578-----77998998479578778706674438325----6899999


Q ss_pred             -----------HHHHHHHHHHHHHHCCCCCEEECHHH-----------HH---HHHHHHHHHHHCCCCCCCCEECCCCHH
Q ss_conf             -----------46789999876642044203300023-----------33---579998531000367533112146402
Q gi|254780215|r  108 -----------QKVVFLRHIEASRITGIPLVIHSRSA-----------DD---DMAAILQEEMKKGPFPFVIHCFSSSQK  162 (262)
Q Consensus       108 -----------Q~~vF~~ql~lA~e~~~pv~iH~r~a-----------~~---~~l~iL~~~~~~~~~~~i~H~FsG~~~  162 (262)
                                 =.+..+.=++.|.+.+-||+|=|=..           ..   +.++-.|..   +.     -.|+-+==
T Consensus       124 ~aGVPL~PGTgLL~sl~eA~~~A~~IGYPVMlKSTAGGGGIGl~~c~~~~eL~~aFe~Vkrl---g~-----~~F~daGV  195 (1226)
T TIGR02712       124 AAGVPLLPGTGLLESLDEALEAAKEIGYPVMLKSTAGGGGIGLQKCDNAAELAEAFETVKRL---GE-----SFFGDAGV  195 (1226)
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH---HH-----HCCCCCCE
T ss_conf             66889888515587799999998646995479870787652451118989999999998998---86-----32363514


Q ss_pred             HHHHHHCCCCEE-------ECCCCCCH-HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             344321035202-------02332211-3332233332105667179830786678777688758824499999999987
Q gi|254780215|r  163 LADICLELGGYI-------SFTGMITF-PKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKE  234 (262)
Q Consensus       163 ~~~~~l~~g~y~-------S~~g~i~~-~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i  234 (262)
                      .+++|++.==++       +-+-++.. +|...+|.  |+   -+++=||=||-|++. .|      ..+...++.|++.
T Consensus       196 FlErfv~~ARHvEVQifGDG~G~v~aLGeRDCSLQR--RN---QKVvEETPAP~LP~~-~R------~~L~~AA~~Lg~~  263 (1226)
T TIGR02712       196 FLERFVENARHVEVQIFGDGKGKVVALGERDCSLQR--RN---QKVVEETPAPNLPEE-TR------AALLAAAEKLGEA  263 (1226)
T ss_pred             EHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCC--CC---CCEEEECCCCCCCHH-HH------HHHHHHHHHHHHH
T ss_conf             340320378428998752697336997116754444--56---655872774686489-99------9999999999997


Q ss_pred             H
Q ss_conf             2
Q gi|254780215|r  235 K  235 (262)
Q Consensus       235 ~  235 (262)
                      -
T Consensus       264 V  264 (1226)
T TIGR02712       264 V  264 (1226)
T ss_pred             H
T ss_conf             1


No 370
>PRK04148 hypothetical protein; Provisional
Probab=22.78  E-value=24  Score=16.31  Aligned_cols=25  Identities=20%  Similarity=0.165  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHCCCCCEEECHHHH
Q ss_conf             7899998766420442033000233
Q gi|254780215|r  110 VVFLRHIEASRITGIPLVIHSRSAD  134 (262)
Q Consensus       110 ~vF~~ql~lA~e~~~pv~iH~r~a~  134 (262)
                      +.....++||++.|-+++|---..+
T Consensus        89 Elq~~il~lakkv~~dliI~PL~~E  113 (135)
T PRK04148         89 DLQPFILELAKKLNCPLYIKPLSGE  113 (135)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             8889999999975998999707888


No 371
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=22.69  E-value=57  Score=13.84  Aligned_cols=12  Identities=17%  Similarity=0.252  Sum_probs=4.5

Q ss_pred             HHHHHHHHCCCC
Q ss_conf             998766420442
Q gi|254780215|r  114 RHIEASRITGIP  125 (262)
Q Consensus       114 ~ql~lA~e~~~p  125 (262)
                      +.+++++..++.
T Consensus       160 ~~l~~~~~~~l~  171 (368)
T cd06840         160 EARDLAKKAGII  171 (368)
T ss_pred             HHHHHHHHCCCC
T ss_conf             999999857993


No 372
>KOG2707 consensus
Probab=22.63  E-value=57  Score=13.84  Aligned_cols=78  Identities=15%  Similarity=0.119  Sum_probs=41.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHH-HHCCCCCCCEECCCCCCCC---CCCC-CCHHHHHHHHHHHHHHHHCCCCCE-EECHHHH
Q ss_conf             24454433446788998853-1001333210044677553---3221-110246789999876642044203-3000233
Q gi|254780215|r   61 VGTHPCHAHEENEVLVDELV-CLASHPRVVAIGETGLDRY---HNAH-TIEEQKVVFLRHIEASRITGIPLV-IHSRSAD  134 (262)
Q Consensus        61 ~GiHP~~~~~~~~~~~~~l~-~l~~~~~~~aIGEiGLD~~---~~~~-~~e~Q~~vF~~ql~lA~e~~~pv~-iH~r~a~  134 (262)
                      =||+|..++..-...++.+. +.+..   ...+|--||--   +... +.-. ..=...-..+|..++||++ +|--.||
T Consensus        71 GGI~P~~a~~~Hr~ni~~~iqral~a---a~~~p~dldaIAVT~gPGl~lsL-~vGl~fA~glA~~l~kPlipVHHMeAH  146 (405)
T KOG2707          71 GGIIPTVAQLLHRENIPRLIQRALDA---AGLSPKDLDAIAVTRGPGLPLSL-KVGLSFAKGLAVKLQKPLIPVHHMEAH  146 (405)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCEEEEEECCCCCEEEH-HHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             79797489999998788999999997---08994551169996389964315-654899999998635886405577776


Q ss_pred             HHHHHHHH
Q ss_conf             35799985
Q gi|254780215|r  135 DDMAAILQ  142 (262)
Q Consensus       135 ~~~l~iL~  142 (262)
                      .-...+-.
T Consensus       147 AL~~rl~~  154 (405)
T KOG2707         147 ALSIRLVD  154 (405)
T ss_pred             HHHHHHCC
T ss_conf             78887516


No 373
>PRK08506 replicative DNA helicase; Provisional
Probab=22.58  E-value=58  Score=13.83  Aligned_cols=129  Identities=14%  Similarity=0.157  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHH-HHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEECCCCHH--HHH-------HHHCCCCEEE
Q ss_conf             46789999876-64204420330002--333579998531000367533112146402--344-------3210352020
Q gi|254780215|r  108 QKVVFLRHIEA-SRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHCFSSSQK--LAD-------ICLELGGYIS  175 (262)
Q Consensus       108 Q~~vF~~ql~l-A~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~--~~~-------~~l~~g~y~S  175 (262)
                      -+.+|.-++.. |.+.++||.+.|-.  +..-+.++|........ .-+   -+|+.+  ..+       ++-++..|+-
T Consensus       205 GKTAfAlniA~~~a~~~~~V~~FSLEMs~~ql~~Rlls~~s~V~~-~~l---r~g~l~~~e~~~~~~a~~~l~~~~l~Id  280 (473)
T PRK08506        205 GKTTLVLNMVLKALNQGKGVAFFSLEMPAEQLMLRMLSAKTSIPL-QNL---RTGDLDDDEWENLSDACDELSQKKLFVY  280 (473)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCC-CCC---CCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             678999999999996599658982247999999999997288783-100---0689999999999999999865988998


Q ss_pred             CCCCCCHHH-HHHHHHHHHCCC-CCCEEEEECCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             233221133-322333321056-6717983078667877----76887588244999999999872899899999
Q gi|254780215|r  176 FTGMITFPK-YDALRAIARGIP-MDRVLVETDSPYIVPV----SCQGKRNEPAYVVNTAKALAKEKDVSYEDLME  244 (262)
Q Consensus       176 ~~g~i~~~~-~~~~~e~v~~iP-ldriLlETDsP~l~p~----~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~  244 (262)
                      =++.+|-.. ..+.|.+.+..+ ++-+++  |  |+--.    ..+.+..+-+.|..-+..+|+-.++++--+++
T Consensus       281 D~~~lti~~Ira~~Rr~k~~~~~l~livI--D--YLQLm~~~~~~~~R~~ev~~ISr~LK~lAkEl~vPViaLSQ  351 (473)
T PRK08506        281 DSGYVNIHQVRAQLRKLKSQHPEIGLAVI--D--YLQLMSGSKNFKDRHLQISEISRGLKLLARELDIPIIALSQ  351 (473)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCEEEE--E--HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             89999999999999999997699878996--3--67554688875308899999999999999996997999703


No 374
>COG4826 Serine protease inhibitor [Posttranslational modification, protein turnover, chaperones]
Probab=22.50  E-value=50  Score=14.26  Aligned_cols=10  Identities=0%  Similarity=0.135  Sum_probs=4.0

Q ss_pred             HHHHHHHCCC
Q ss_conf             2333321056
Q gi|254780215|r  187 ALRAIARGIP  196 (262)
Q Consensus       187 ~~~e~v~~iP  196 (262)
                      +.+++..++|
T Consensus       283 ~y~elk~~m~  292 (410)
T COG4826         283 KYTELKSNME  292 (410)
T ss_pred             HHHHHHHCCC
T ss_conf             8999874277


No 375
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR.  Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=22.50  E-value=58  Score=13.82  Aligned_cols=55  Identities=18%  Similarity=0.281  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHCCCCCEEECHHHHH-HHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHC
Q ss_conf             999987664204420330002333-5799985310003675331121464023443210
Q gi|254780215|r  112 FLRHIEASRITGIPLVIHSRSADD-DMAAILQEEMKKGPFPFVIHCFSSSQKLADICLE  169 (262)
Q Consensus       112 F~~ql~lA~e~~~pv~iH~r~a~~-~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~  169 (262)
                      +...++.+.+.+..|.+...+... ....+|++.......++|+||   +.+.+.++++
T Consensus       143 Lq~ll~~~~~~~~~i~~~~~~~~~~~~~~~L~~i~~~~~~~iVld~---~~~~~~~vl~  198 (324)
T cd06368         143 LQELLDALSPKGIQVTVRRLDDDTDMYRPLLKEIKREKERRIILDC---SPERLKEFLE  198 (324)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHH
T ss_conf             9999986532597799997789863589999999747977999989---8699999999


No 376
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=22.45  E-value=58  Score=13.81  Aligned_cols=48  Identities=6%  Similarity=0.039  Sum_probs=24.1

Q ss_pred             CHHHHHHHHCCCCEEECCCCCCHHHHHH--HHHHHHCCCCCCEEEEECCCCC
Q ss_conf             4023443210352020233221133322--3333210566717983078667
Q gi|254780215|r  160 SQKLADICLELGGYISFTGMITFPKYDA--LRAIARGIPMDRVLVETDSPYI  209 (262)
Q Consensus       160 ~~~~~~~~l~~g~y~S~~g~i~~~~~~~--~~e~v~~iPldriLlETDsP~l  209 (262)
                      ..-.++++++...=+|+-.+  .....+  .-..+.++-.+.||-+|-+|..
T Consensus       176 ~~~i~E~~i~f~~ElSviva--R~~~G~~~~yP~~en~h~~gil~~s~~Pa~  225 (377)
T PRK06019        176 GPCILEEFVPFEREVSVIVA--RGRDGEVVFYPLVENVHRNGILRTSIAPAP  225 (377)
T ss_pred             CCEEEEEEECCEEEEEEEEE--ECCCCCEEEECCHHCEEECCEEEEEECCCC
T ss_conf             98899965435189999999--848999999444114777775589988999


No 377
>pfam01261 AP_endonuc_2 Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.
Probab=22.45  E-value=58  Score=13.81  Aligned_cols=22  Identities=14%  Similarity=0.154  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEC
Q ss_conf             6789999876642044203300
Q gi|254780215|r  109 KVVFLRHIEASRITGIPLVIHS  130 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~~pv~iH~  130 (262)
                      .+.|.+-.+.|.+.+..+.++.
T Consensus       102 ~~~l~~~~~~a~~~gi~i~iE~  123 (201)
T pfam01261       102 AESLNELAELAEEYGVKLALEN  123 (201)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEE
T ss_conf             9999999998875573899998


No 378
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=22.45  E-value=58  Score=13.81  Aligned_cols=22  Identities=9%  Similarity=0.063  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHCC-CCCEEEC
Q ss_conf             678999987664204-4203300
Q gi|254780215|r  109 KVVFLRHIEASRITG-IPLVIHS  130 (262)
Q Consensus       109 ~~vF~~ql~lA~e~~-~pv~iH~  130 (262)
                      +.-++..|..|..++ -|+.|.-
T Consensus       451 e~el~~ml~ta~~~~~gP~AiRy  473 (627)
T COG1154         451 EEELRQMLYTALAQDDGPVAIRY  473 (627)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             99999999999864788748994


No 379
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=22.21  E-value=58  Score=13.78  Aligned_cols=69  Identities=19%  Similarity=0.160  Sum_probs=40.8

Q ss_pred             CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCEEEC-HHHHHHHHHHHHH
Q ss_conf             788998853100133321004467755332211--10246789999876642044203300-0233357999853
Q gi|254780215|r   72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHT--IEEQKVVFLRHIEASRITGIPLVIHS-RSADDDMAAILQE  143 (262)
Q Consensus        72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~--~e~Q~~vF~~ql~lA~e~~~pv~iH~-r~a~~~~l~iL~~  143 (262)
                      .+..++.+..++.+.++..| =|||.+.-+...  ...+..-|...  |...+++||.... |-.-.+.-+.|.+
T Consensus        39 ~~~~~~~l~~ii~e~~i~~i-ViGlP~~~~g~~~~~~~~v~~F~~~--L~~~~~l~v~~~DEr~TS~~A~~~l~~  110 (141)
T PRK00109         39 GEPDWDALEKLLKEWQPDLL-VVGLPLNMDGTEGPMTERARKFANR--LEGRFGLPVELVDERLTTVEAERMLFE  110 (141)
T ss_pred             CHHHHHHHHHHHHHHCCCEE-EEECCCCCCCCCCHHHHHHHHHHHH--HHHHHCCCEEEEECCCCHHHHHHHHHH
T ss_conf             06899999999998399989-9944799998844889999999999--999729987986243279999999997


No 380
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina frisia Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer . The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) . This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=22.19  E-value=59  Score=13.78  Aligned_cols=57  Identities=19%  Similarity=0.247  Sum_probs=33.5

Q ss_pred             CCCCCCCCCCCCH-HHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             2445443344678-8998853100133321004467755332211102467899998766420442033
Q gi|254780215|r   61 VGTHPCHAHEENE-VLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVI  128 (262)
Q Consensus        61 ~GiHP~~~~~~~~-~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~i  128 (262)
                      .|=-|..|.--.+ .....+.+-+..|=.| +|          ...+.|++++|.-.++++++|+||+=
T Consensus         5 ~i~~~~~A~~~~pG~~v~~MIkkAkrPLLv-~G----------~~l~~~Ek~~E~~~K~iekF~l~vva   62 (170)
T TIGR00315         5 AISGPKEATLVEPGKLVAMMIKKAKRPLLV-VG----------PNLEKDEKLLELVVKFIEKFDLPVVA   62 (170)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHCCCCEEE-EC----------CCCHHCCHHHHHHHHHHHHCCCCEEE
T ss_conf             788755167536884256767762886053-36----------10012121345555556432886474


No 381
>pfam07700 HNOB Heme NO binding. The HNOB (Heme NO Binding) domain, is a predominantly alpha-helical domain and binds heme via a covalent linkage to histidine. The HNOB domain is predicted to function as a heme-dependent sensor for gaseous ligands, and transduce diverse downstream signals, in both bacteria and animals.
Probab=22.09  E-value=59  Score=13.76  Aligned_cols=12  Identities=42%  Similarity=0.650  Sum_probs=5.7

Q ss_pred             HHHHHHCCCCCE
Q ss_conf             876642044203
Q gi|254780215|r  116 IEASRITGIPLV  127 (262)
Q Consensus       116 l~lA~e~~~pv~  127 (262)
                      -.+|+..++|+-
T Consensus        53 ~a~s~~~g~~~~   64 (171)
T pfam07700        53 AAASKVLGIPAE   64 (171)
T ss_pred             HHHHHHHCCCHH
T ss_conf             999999892999


No 382
>pfam00549 Ligase_CoA CoA-ligase. This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilize ATP others use GTP.
Probab=22.06  E-value=59  Score=13.76  Aligned_cols=69  Identities=20%  Similarity=0.263  Sum_probs=38.1

Q ss_pred             CCCCCCCCC-----C-CHHHHHHHHHHCCCCC---CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH
Q ss_conf             445443344-----6-7889988531001333---210044677553322111024678999987664204420330002
Q gi|254780215|r   62 GTHPCHAHE-----E-NEVLVDELVCLASHPR---VVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS  132 (262)
Q Consensus        62 GiHP~~~~~-----~-~~~~~~~l~~l~~~~~---~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~  132 (262)
                      |..|...-+     . .....+.++.+..+|+   ++-+||+|.-.      .|.--.-+...++-++..++||+....+
T Consensus        19 G~~~a~~ldiGGd~~~~~~~~e~l~~~~~Dp~tk~Ili~~~~G~g~------~e~~A~~~v~a~~~~~~~~~PvVa~i~G   92 (128)
T pfam00549        19 GGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVLGYGA------CEDPAGGLLKAIKEARARELPVVARVCG   92 (128)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCC------HHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             9983258883799986337999999995788862999998774362------6999999999999846998758999930


Q ss_pred             HHHH
Q ss_conf             3335
Q gi|254780215|r  133 ADDD  136 (262)
Q Consensus       133 a~~~  136 (262)
                      ...+
T Consensus        93 t~a~   96 (128)
T pfam00549        93 TEAD   96 (128)
T ss_pred             CCCC
T ss_conf             2699


No 383
>pfam01799 Fer2_2 [2Fe-2S] binding domain.
Probab=22.02  E-value=59  Score=13.76  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=29.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             7588244999999999872899899999999999998
Q gi|254780215|r  217 KRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKL  253 (262)
Q Consensus       217 ~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~  253 (262)
                      ..+.|.++..+...+.+-.+.+.+++.+.+..|..|-
T Consensus        27 GfCtPG~ims~~~ll~~~~~~~~~~i~~~l~GnlCRC   63 (75)
T pfam01799        27 GYCTPGMVMAATALLERNPDPTEEEIREALSGNLCRC   63 (75)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCC
T ss_conf             8875049999999997289989899999986680307


No 384
>PRK08694 consensus
Probab=21.93  E-value=59  Score=13.74  Aligned_cols=129  Identities=19%  Similarity=0.183  Sum_probs=67.1

Q ss_pred             HHHHHHHHHH--HHHHCCCCCEEECHHH--HHHHHHHHHHHHHCCCCCCCCEECCCCH---------HHHHHHHCCCCEE
Q ss_conf             4678999987--6642044203300023--3357999853100036753311214640---------2344321035202
Q gi|254780215|r  108 QKVVFLRHIE--ASRITGIPLVIHSRSA--DDDMAAILQEEMKKGPFPFVIHCFSSSQ---------KLADICLELGGYI  174 (262)
Q Consensus       108 Q~~vF~~ql~--lA~e~~~pv~iH~r~a--~~~~l~iL~~~~~~~~~~~i~H~FsG~~---------~~~~~~l~~g~y~  174 (262)
                      -+..|.-++.  .|.+.++||.+.+...  ..-+.+++....... ...+   -+|..         +.+.++-+...|+
T Consensus       230 GKTalalnia~~~a~~~~~~V~~fSLEMs~~~l~~Rlla~~s~v~-~~~i---~~g~l~~~e~~~~~~a~~~l~~~pl~i  305 (468)
T PRK08694        230 GKTAFSINIAEHVAVEGKLPVAVFSMEMGGAQLVMRMLGSVGRLD-QSVL---KTGRLEDEHWGRLNEAVVKLSDAPVYI  305 (468)
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCC-HHHC---CCCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf             378999999999998479847997788999999999999725986-3211---048999999999999999986299689


Q ss_pred             ECCCCCCHH-HHHHHHHHHHCCC--CCCEEEEECCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             023322113-3322333321056--67179830786678777688----7588244999999999872899899999
Q gi|254780215|r  175 SFTGMITFP-KYDALRAIARGIP--MDRVLVETDSPYIVPVSCQG----KRNEPAYVVNTAKALAKEKDVSYEDLME  244 (262)
Q Consensus       175 S~~g~i~~~-~~~~~~e~v~~iP--ldriLlETDsP~l~p~~~r~----~~n~P~~i~~~~~~iA~i~~~~~eei~~  244 (262)
                      -=++.++-. -..+.|.+.+...  ++-+.+  |  |+--....+    +..+-+.|..-+..+|+-.++++--+++
T Consensus       306 dd~~~~t~~~i~a~~r~~~~~~~~kl~~vvI--D--YLqLi~~~~~~~~r~~~i~~isr~LK~lAkel~ipvi~LsQ  378 (468)
T PRK08694        306 DETPGLTALELRARARRLARQFNNKLGLIVI--D--YLQLMAGSGRSDNRASELGEISRSLKALAKELQVPIIALSQ  378 (468)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE--E--HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             7699998879999999999983898738997--3--67541688876559999999999999999997998999632


No 385
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507   This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity.
Probab=21.77  E-value=39  Score=14.98  Aligned_cols=83  Identities=16%  Similarity=0.211  Sum_probs=49.0

Q ss_pred             CCEECCCCHHHHHHHHCCCCE-EEC--CCCCCHHHHHHHHHHHHCCCCCCEEEEECC-------CCCCCCCCCCCCCCHH
Q ss_conf             311214640234432103520-202--332211333223333210566717983078-------6678777688758824
Q gi|254780215|r  153 VIHCFSSSQKLADICLELGGY-ISF--TGMITFPKYDALRAIARGIPMDRVLVETDS-------PYIVPVSCQGKRNEPA  222 (262)
Q Consensus       153 i~H~FsG~~~~~~~~l~~g~y-~S~--~g~i~~~~~~~~~e~v~~iPldriLlETDs-------P~l~p~~~r~~~n~P~  222 (262)
                      |.=|   |.+++- .+..|+- =++  ...|+-|...++-=+.|..||+.+-||+=.       ==++|.|  +=.|.|.
T Consensus        81 VvPC---SmKtLs-aIa~G~a~NLitRAADV~LKErRkLvL~~REtPL~SiHLENmL~L~~~G~IIlPP~P--aFY~rPk  154 (181)
T TIGR00421        81 VVPC---SMKTLS-AIANGYAENLITRAADVALKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPPVP--AFYNRPK  154 (181)
T ss_pred             EECC---CHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCC--CCCCCCC
T ss_conf             8648---567899-998511055688897554220542464036788751548999999827925327955--4447898


Q ss_pred             ----HHHHHHHHHHHHHCCCHHH
Q ss_conf             ----4999999999872899899
Q gi|254780215|r  223 ----YVVNTAKALAKEKDVSYED  241 (262)
Q Consensus       223 ----~i~~~~~~iA~i~~~~~ee  241 (262)
                          ++.+++-.+.++.|+..+.
T Consensus       155 S~~Dl~~~~VgR~LD~lGI~~d~  177 (181)
T TIGR00421       155 SVEDLIDFIVGRVLDQLGIENDL  177 (181)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             87889867798777762443788


No 386
>TIGR01264 tyr_amTase_E tyrosine aminotransferase; InterPro: IPR005957   This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate.  L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate.; GO: 0004838 tyrosine transaminase activity, 0030170 pyridoxal phosphate binding, 0009072 aromatic amino acid family metabolic process.
Probab=21.75  E-value=60  Score=13.72  Aligned_cols=133  Identities=12%  Similarity=0.164  Sum_probs=68.0

Q ss_pred             EEEECCCHHHHHHHHHHHHH-------CCCCC-C------CCCCCCCCCC---CCCCHHHHHHHHHHCCCC-CCCEECCC
Q ss_conf             99916798778999999985-------57233-2------1124454433---446788998853100133-32100446
Q gi|254780215|r   33 MIAIAIKVKDFVPLIKLCQD-------YPSSI-F------CSVGTHPCHA---HEENEVLVDELVCLASHP-RVVAIGET   94 (262)
Q Consensus        33 ~i~~~~~~~~~~~~~~l~~~-------~p~~i-~------~a~GiHP~~~---~~~~~~~~~~l~~l~~~~-~~~aIGEi   94 (262)
                      +++.|++-.=-.-+..+|..       .|++. |      .-+++|++..   .+.++.++++|+.++.+. ++.-|-==
T Consensus       107 vl~SGCS~Al~~ai~a~Ad~G~nvLVP~PGFplY~Tlc~~~~i~~~~Y~~d~~d~~w~~DL~~l~~LiDd~T~~l~vnNP  186 (415)
T TIGR01264       107 VLCSGCSHALEMAIEALADAGQNVLVPRPGFPLYETLCKALGIEVKLYNLDLPDEDWEIDLKQLESLIDDKTKALIVNNP  186 (415)
T ss_pred             EECCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             77167027899999995379780630788872078864014762000025798733566489886312567407888375


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE-----CHHHH---HHHHHHHHHHHHCCCCCCCCEECCCCHHHHHH
Q ss_conf             77553322111024678999987664204420330-----00233---35799985310003675331121464023443
Q gi|254780215|r   95 GLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIH-----SRSAD---DDMAAILQEEMKKGPFPFVIHCFSSSQKLADI  166 (262)
Q Consensus        95 GLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH-----~r~a~---~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~  166 (262)
                      |   .-..+-..  ++=+++.|.+|.++.+|++==     .+-..   .-++.=|.+.-  ...+ ++-| .   -++|+
T Consensus       187 S---NPcGSvF~--~~Hl~~l~a~A~~~~Lpi~ADEIY~~~VF~GkDPnatF~~lA~L~--s~VP-~~~c-g---G~AKr  254 (415)
T TIGR01264       187 S---NPCGSVFR--REHLEELLALAERLKLPIIADEIYGDMVFKGKDPNATFTPLASLS--SKVP-ILSC-G---GLAKR  254 (415)
T ss_pred             C---CCCCCCCC--HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCC--CCCC-EEEE-C---CCCCC
T ss_conf             7---78898878--788999999987538723664202565138867864220202377--9988-6870-7---63200


Q ss_pred             HHC----CCCEEECC
Q ss_conf             210----35202023
Q gi|254780215|r  167 CLE----LGGYISFT  177 (262)
Q Consensus       167 ~l~----~g~y~S~~  177 (262)
                      |+=    +||-+=..
T Consensus       255 ~lVPGWRLGWli~hd  269 (415)
T TIGR01264       255 WLVPGWRLGWLIIHD  269 (415)
T ss_pred             CCCCCCCCCCEEEEC
T ss_conf             224761102478887


No 387
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=21.72  E-value=60  Score=13.72  Aligned_cols=18  Identities=17%  Similarity=0.246  Sum_probs=10.9

Q ss_pred             CCHHHHHHHHHHHHHCCC
Q ss_conf             798778999999985572
Q gi|254780215|r   38 IKVKDFVPLIKLCQDYPS   55 (262)
Q Consensus        38 ~~~~~~~~~~~l~~~~p~   55 (262)
                      .++-|...++++.+.+++
T Consensus        39 NN~lD~daA~~lv~ef~~   56 (391)
T PRK07106         39 INLLDALNSWQLVKELKE   56 (391)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             789999999999997565


No 388
>pfam08569 Mo25 Mo25-like. Mo25-like proteins are involved in both polarized growth and cytokinesis. In fission yeast Mo25 is localized alternately to the spindle pole body and to the site cell division in a cell cycle dependent manner.
Probab=21.64  E-value=59  Score=13.76  Aligned_cols=75  Identities=12%  Similarity=0.054  Sum_probs=47.1

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             32233332105667179830786678777688758824499999999987289989999999999999842568750
Q gi|254780215|r  185 YDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKISECV  261 (262)
Q Consensus       185 ~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~~~~~  261 (262)
                      +.-+||++|.=++-+++++++.=|....-.+...-+  ---......-++.-....-+++-+..|+.+||++.+..+
T Consensus       143 G~mLRecir~e~la~~iL~s~~f~~fF~yv~~~~Fd--iasDAf~TfkelLT~Hk~lvaefl~~Nyd~Ff~~yn~Ll  217 (334)
T pfam08569       143 GDMLRECIKHEALAKIILYSPQFWKFFKYVQLSTFE--IATDAFSTFKDLLTTHKKLVAEFLLNNYDRFFSMFNKLL  217 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             599999997599999996578899999998077126--677889889999970788999999996999999999986


No 389
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=21.33  E-value=61  Score=13.66  Aligned_cols=136  Identities=17%  Similarity=0.137  Sum_probs=62.2

Q ss_pred             CCCCCCCCCCCC-CHHHHHHHHH----HCCCCCCCEECCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHCCCC-CEE---E
Q ss_conf             124454433446-7889988531----00133321004467755332-211102467899998766420442-033---0
Q gi|254780215|r   60 SVGTHPCHAHEE-NEVLVDELVC----LASHPRVVAIGETGLDRYHN-AHTIEEQKVVFLRHIEASRITGIP-LVI---H  129 (262)
Q Consensus        60 a~GiHP~~~~~~-~~~~~~~l~~----l~~~~~~~aIGEiGLD~~~~-~~~~e~Q~~vF~~ql~lA~e~~~p-v~i---H  129 (262)
                      .+=+||=+.... .++.++++.+    +...+.+..+.|.    ... .+....|-.-+.+-++++.+.++. +-|   |
T Consensus       103 ~lv~HpG~~~~~~~e~~l~~i~~~Ln~~~~~~~v~i~~e~----~agegs~~g~~F~~L~eii~~~~~~~~igvCiDtcH  178 (280)
T COG0648         103 LLVFHPGSYLGQGKEEGLNRIAEALNELLEEEGVIILLEN----TAGEGSGKGTQFGELAEIIDLIEEKERIGVCIDTCH  178 (280)
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE----ECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECHH
T ss_conf             8997775014788899999999999998501487289877----446667656422419999986336575499987120


Q ss_pred             --CHH-------HHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCC-
Q ss_conf             --002-------3335799985310003675331121464023443210352020233221133322333321056671-
Q gi|254780215|r  130 --SRS-------ADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDR-  199 (262)
Q Consensus       130 --~r~-------a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldr-  199 (262)
                        .++       .++++++-+.+..... .--++| |+++..-.-...|+=--++.+ .+-|   +.++.+++.-..+- 
T Consensus       179 ~~Aagy~~~~~~~~~~vl~~~d~~~G~~-~~~~~H-lndsk~~~G~~kDRH~~ig~G-~ig~---e~l~~~~~d~~~~~i  252 (280)
T COG0648         179 AFAAGYDIITEEDFEKVLNEFDKVLGLE-YLKHIH-LNDSKYPLGSNKDRHENIGEG-YIGF---EALRKILKDFRIDGI  252 (280)
T ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHCHH-HHEEEE-ECCCCCCCCCCCCCCCCCCCC-CCCH---HHHHHHHHCCCCCCC
T ss_conf             4435478575788999999999985714-330676-337614366551112356789-9885---899999812120587


Q ss_pred             -EEEEEC
Q ss_conf             -798307
Q gi|254780215|r  200 -VLVETD  205 (262)
Q Consensus       200 -iLlETD  205 (262)
                       +.+||=
T Consensus       253 PiIlETP  259 (280)
T COG0648         253 PIILETP  259 (280)
T ss_pred             EEEEECC
T ss_conf             4897289


No 390
>PTZ00066 pyruvate kinase; Provisional
Probab=21.22  E-value=61  Score=13.65  Aligned_cols=103  Identities=18%  Similarity=0.144  Sum_probs=60.0

Q ss_pred             HCCHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHCCC--CCCCE
Q ss_conf             226899999999869989999167-987789999999855723321124454433-44678899885310013--33210
Q gi|254780215|r   15 DEDRHDVIMRAHQANVLKMIAIAI-KVKDFVPLIKLCQDYPSSIFCSVGTHPCHA-HEENEVLVDELVCLASH--PRVVA   90 (262)
Q Consensus        15 ~~d~~~~i~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~-~~~~~~~~~~l~~l~~~--~~~~a   90 (262)
                      +.|..++++-+.+.|++.+-..-+ +.++...+.++.++...        |+.-. .=....-++.|.+.+..  .=.+|
T Consensus       209 ekD~~dil~fa~~~~vD~IalSFVrs~~DV~~~r~~l~~~g~--------~~~IIaKIE~~~av~NldeIi~~sDgIMVA  280 (513)
T PTZ00066        209 EKDKNDILNFAIPMNCDFIALSFIQSADDVRLCRNLLGERGK--------HIKIIPKIENIEGLINFDKILAESDGIMVA  280 (513)
T ss_pred             CCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCC--------CCEEEEEECCHHHHHCHHHHHHHCCEEEEE
T ss_conf             368899999998759999998677998999999999997598--------645899843765565899999858989995


Q ss_pred             ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf             0446775533221110246789999876642044203300
Q gi|254780215|r   91 IGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS  130 (262)
Q Consensus        91 IGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~  130 (262)
                      =|..|+..-...- .-.|+    +.+..|.+.+|||++=+
T Consensus       281 RGDLgvEip~e~v-p~~QK----~II~~c~~~gKPVIvAT  315 (513)
T PTZ00066        281 RGDLGMEIPPEKV-FLAQK----LMISKCNLQGKPIITAT  315 (513)
T ss_pred             CCCCCCCCCHHHH-HHHHH----HHHHHHHHCCCCEEEEC
T ss_conf             6854242698886-89999----99999997599699974


No 391
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]
Probab=21.21  E-value=61  Score=13.65  Aligned_cols=31  Identities=13%  Similarity=0.183  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHCCCCCEEECHHHHHHHHHHH
Q ss_conf             8999987664204420330002333579998
Q gi|254780215|r  111 VFLRHIEASRITGIPLVIHSRSADDDMAAIL  141 (262)
Q Consensus       111 vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL  141 (262)
                      +...++.++++..-|..+-.+++...+-++|
T Consensus       139 ~~~~~l~~lk~~kyP~l~~k~d~~~~~~dLl  169 (473)
T COG4623         139 AHVEDLKLLKETKYPELIWKVDDKLGVEDLL  169 (473)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHCCCCCHHHHH
T ss_conf             8889999998731634430202212699999


No 392
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=21.03  E-value=62  Score=13.62  Aligned_cols=46  Identities=4%  Similarity=-0.015  Sum_probs=27.3

Q ss_pred             ECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC----------CCHHHHHHHHHHHHHCC
Q ss_conf             13888756522689999999986998999916----------79877899999998557
Q gi|254780215|r    6 HCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA----------IKVKDFVPLIKLCQDYP   54 (262)
Q Consensus         6 H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~----------~~~~~~~~~~~l~~~~p   54 (262)
                      .||++.   ..-....+++|.+.|...+-.=.          .+.++..+..+.+++++
T Consensus         3 G~HvS~---agg~~~a~~~a~~~g~~~~QiF~~~pr~w~~~~~~~~~~~~f~~~~~~~~   58 (273)
T smart00518        3 GAHVSA---AGGLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENN   58 (273)
T ss_pred             EEEECC---CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             675556---65799999999985998999978898889999999999999999999839


No 393
>PRK13127 consensus
Probab=21.01  E-value=62  Score=13.62  Aligned_cols=104  Identities=11%  Similarity=0.044  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHCCCC-CEEECH--HHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC--C--CEEECCCCCCHH-
Q ss_conf             99998766420442-033000--233357999853100036753311214640234432103--5--202023322113-
Q gi|254780215|r  112 FLRHIEASRITGIP-LVIHSR--SADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL--G--GYISFTGMITFP-  183 (262)
Q Consensus       112 F~~ql~lA~e~~~p-v~iH~r--~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~--g--~y~S~~g~i~~~-  183 (262)
                      ++++++-|++.+.- +++...  ....++.+.++++   +...+-+=.-+.+.+-++++.+.  |  ||+|..|+---+ 
T Consensus       104 ~e~F~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~---gi~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~  180 (262)
T PRK13127        104 VEKFVKKAAEAGVSGLIIPDLPVEEATDLREACKKH---GLDLVFLVAPTTPEERLKRIDEASSGFVYLVSRLGVTGARE  180 (262)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC---CCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf             999999998759976996699978999999999855---83279985899989999999843898189984355568765


Q ss_pred             -HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             -33223333210566717983078667877768875882449999
Q gi|254780215|r  184 -KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNT  227 (262)
Q Consensus       184 -~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~  227 (262)
                       -...+.+.++.+     =--||-|-..    .=..++|..+..+
T Consensus       181 ~~~~~~~~~i~~i-----k~~t~~Pv~v----GFGI~~~e~v~~~  216 (262)
T PRK13127        181 DVEEATFDLLKRA-----RTTCKNKIAV----GFGISKGEHAEEL  216 (262)
T ss_pred             CCHHHHHHHHHHH-----HHCCCCCEEE----EEEECCHHHHHHH
T ss_conf             5528899999999-----9617998489----9334889999999


No 394
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=21.00  E-value=62  Score=13.62  Aligned_cols=59  Identities=22%  Similarity=0.351  Sum_probs=40.4

Q ss_pred             HHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE--EECHHHHHHHHHHHHH
Q ss_conf             9885310013332100446775533221110246789999876642044203--3000233357999853
Q gi|254780215|r   76 VDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLV--IHSRSADDDMAAILQE  143 (262)
Q Consensus        76 ~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~--iH~r~a~~~~l~iL~~  143 (262)
                      +..|.....+..++.|-|||        .+|..-..|.+.++-+-+-++|++  ||-+. ...+++-+++
T Consensus        86 ~~~L~~a~~~~dlivIDEIG--------~mEl~s~~F~~~v~~~l~~~~~vl~ti~~~~-~~~~v~~i~~  146 (168)
T pfam03266        86 LPALRRALEEADLIIIDEIG--------PMELKSPKFREAIEEVLSSNKPVLAVVHRRS-DSPLVERIRR  146 (168)
T ss_pred             HHHHHHCCCCCCEEEEECCC--------HHHHHHHHHHHHHHHHHCCCCCEEEEEEECC-CCHHHHHHHC
T ss_conf             99998406689899997631--------4533149999999999669997999997258-9838999741


No 395
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=20.87  E-value=62  Score=13.60  Aligned_cols=78  Identities=19%  Similarity=0.187  Sum_probs=37.7

Q ss_pred             CCCCCCCHHH-HHHHHHHHHHHHHCCCCCEEECHHH--H-----------H-HHHHHHHHHHHCCCCCCCCEECCCCHHH
Q ss_conf             3322111024-6789999876642044203300023--3-----------3-5799985310003675331121464023
Q gi|254780215|r   99 YHNAHTIEEQ-KVVFLRHIEASRITGIPLVIHSRSA--D-----------D-DMAAILQEEMKKGPFPFVIHCFSSSQKL  163 (262)
Q Consensus        99 ~~~~~~~e~Q-~~vF~~ql~lA~e~~~pv~iH~r~a--~-----------~-~~l~iL~~~~~~~~~~~i~H~FsG~~~~  163 (262)
                      +|.......+ .+.-++-.+++++++-|++|+.+--  .           + .-+....+..   +.+.++=.=+.+.+.
T Consensus        40 lR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~dlA~~~~AdGVHlGq~D~~~~~ar~~~---~~~~iIG~S~h~~ee  116 (211)
T COG0352          40 LREKDLSDEEYLALAEKLRALCQKYGVPLIINDRVDLALAVGADGVHLGQDDMPLAEARELL---GPGLIIGLSTHDLEE  116 (211)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHCCCCEEEECCCCCCHHHHHHHC---CCCCEEEEECCCHHH
T ss_conf             80289874999999999999999819809966839999767998897087654558899741---999789830499999


Q ss_pred             HHHHHCCCC-EEECCCC
Q ss_conf             443210352-0202332
Q gi|254780215|r  164 ADICLELGG-YISFTGM  179 (262)
Q Consensus       164 ~~~~l~~g~-y~S~~g~  179 (262)
                      +++..++|. |++|++.
T Consensus       117 a~~A~~~g~DYv~~Gpi  133 (211)
T COG0352         117 ALEAEELGADYVGLGPI  133 (211)
T ss_pred             HHHHHHCCCCEEEECCC
T ss_conf             99987639999998886


No 396
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=20.86  E-value=62  Score=13.60  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=11.3

Q ss_pred             HHHHHCCCCCEEEC-HHHHHHHHHHHH
Q ss_conf             76642044203300-023335799985
Q gi|254780215|r  117 EASRITGIPLVIHS-RSADDDMAAILQ  142 (262)
Q Consensus       117 ~lA~e~~~pv~iH~-r~a~~~~l~iL~  142 (262)
                      +|++..+.|+..-. .....+..+.++
T Consensus       139 ~l~~~~~ipIa~gE~~~~~~~~~~~i~  165 (229)
T cd00308         139 ALRRRTGIPIAADESVTTVDDALEALE  165 (229)
T ss_pred             HHHCCCCCCEECCCCCCCHHHHHHHHH
T ss_conf             996136998637876789999999999


No 397
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=20.81  E-value=62  Score=13.59  Aligned_cols=56  Identities=16%  Similarity=0.249  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHCCCCCEEECHHHHH---HHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHC
Q ss_conf             8999987664204420330002333---5799985310003675331121464023443210
Q gi|254780215|r  111 VFLRHIEASRITGIPLVIHSRSADD---DMAAILQEEMKKGPFPFVIHCFSSSQKLADICLE  169 (262)
Q Consensus       111 vF~~ql~lA~e~~~pv~iH~r~a~~---~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~  169 (262)
                      -+...++.+...+.+|.+...+...   +...+|++.......++|++|   +.+.+..+++
T Consensus       139 rLq~ll~~~~~~~~~v~~r~~~~~~d~~~~r~~Lkei~~~~~~~IIlDc---~~e~~~~iL~  197 (372)
T cd06387         139 ILQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDC---EVERINTILE  197 (372)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHH
T ss_conf             9999998764059769999805778725689999997634762799989---8899999999


No 398
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.70  E-value=63  Score=13.58  Aligned_cols=28  Identities=18%  Similarity=0.231  Sum_probs=15.3

Q ss_pred             CCCEECCCCHHHHHHHHCC--C--CEEECCCC
Q ss_conf             3311214640234432103--5--20202332
Q gi|254780215|r  152 FVIHCFSSSQKLADICLEL--G--GYISFTGM  179 (262)
Q Consensus       152 ~i~H~FsG~~~~~~~~l~~--g--~y~S~~g~  179 (262)
                      +-+=.=+-+.+.+++..+.  |  ||+|.+|+
T Consensus       151 I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~Gv  182 (265)
T COG0159         151 IFLVAPTTPDERLKKIAEAASGFIYYVSRMGV  182 (265)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             98869999989999999747985899966666


No 399
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=20.69  E-value=63  Score=13.58  Aligned_cols=46  Identities=17%  Similarity=0.216  Sum_probs=27.8

Q ss_pred             CCCCCCEECCCCH-HHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHC
Q ss_conf             6753311214640-23443210352-0202332211333223333210
Q gi|254780215|r  149 PFPFVIHCFSSSQ-KLADICLELGG-YISFTGMITFPKYDALRAIARG  194 (262)
Q Consensus       149 ~~~~i~H~FsG~~-~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~  194 (262)
                      |.+.|+|.=||.+ +++++.+++|. .+-|+..+-+-=...+|+.+..
T Consensus       245 pipLVLHGgSGvp~e~i~~AI~~GV~KINI~Tdlr~Aft~air~~~~~  292 (345)
T cd00946         245 PLYFVFHGGSGSTKEEIREAISYGVVKMNIDTDTQWAYWEGVRNYYLK  292 (345)
T ss_pred             CCEEEECCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             730785189999999999999839563345708899999999999984


No 400
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase; InterPro: IPR011821   Proteins in this entry are important in the interconversion of the sulphur-containing amino acids L-cysteine and L-methionine in bacteria. In bacteria, inorganic sulphur is reduced to sulphide, which is then used to displace the acetyl group of O-acetyl-L-serine to form the essential amino acid L-cysteine. Biosynthesis of L-methionine then occurs via the transsulphuration pathway which involves the sequential action of two pyridoxal 5'-phosphate (PLP) enzymes, cystathionine gamma-synthase (CGS) and cystathionine beta-lyase (CBL). Firstly CGS catalyses the formation of the intermediate cystathione from a homoserine ester and L-cysteine. This intermediate is then converted by CBL to L-homoserine, which is subsequently methylated by methionine synthase to form L-methionine. For more information see .   The CGS enzyme (P00935 from SWISSPROT) from Escherichia coli is, like other CGS enzymes, a homotetramer composed of two catalytically active dimers . The active site of each dimer is found at the interface between the monomers and involves residues from each monomer. Catalysis occurs by alpha,gamma-elimination/replacement reactions..
Probab=20.62  E-value=63  Score=13.57  Aligned_cols=48  Identities=25%  Similarity=0.364  Sum_probs=21.0

Q ss_pred             EECCCCHHHHHHHHCCCCE-EECCCCCCHHH-HHHHHHHHHCCCCCCEEEEECC
Q ss_conf             1214640234432103520-20233221133-3223333210566717983078
Q gi|254780215|r  155 HCFSSSQKLADICLELGGY-ISFTGMITFPK-YDALRAIARGIPMDRVLVETDS  206 (262)
Q Consensus       155 H~FsG~~~~~~~~l~~g~y-~S~~g~i~~~~-~~~~~e~v~~iPldriLlETDs  206 (262)
                      =||.|++..++...+.|.| |-|.    ..+ .+-++.+++.-..-=+|+||=|
T Consensus        98 DCYGGtYRLl~~lA~kG~~~v~fV----DQ~D~~al~~ALa~kdPKLVlIEtPS  147 (383)
T TIGR02080        98 DCYGGTYRLLNALAKKGQFKVQFV----DQSDEQALEAALAQKDPKLVLIETPS  147 (383)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEE----ECCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             267704888864520783389986----07628999999974698479986799


No 401
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=20.53  E-value=63  Score=13.55  Aligned_cols=105  Identities=7%  Similarity=0.035  Sum_probs=56.4

Q ss_pred             CHHHHHHHHHHCCCCEEEEECC-------CHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             6899999999869989999167-------987789999999855-72332112445443344678899885310013332
Q gi|254780215|r   17 DRHDVIMRAHQANVLKMIAIAI-------KVKDFVPLIKLCQDY-PSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRV   88 (262)
Q Consensus        17 d~~~~i~~a~~~gv~~~i~~~~-------~~~~~~~~~~l~~~~-p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~   88 (262)
                      .+.+.++.....|+..++..|+       +.++..+..+.+.+. .+.+-.-.|+..     ...+..+ +.+.+.+-.+
T Consensus        22 ~~~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~v~~~~~~~~~g~~~vi~g~g~-----~t~~~i~-la~~a~~~Ga   95 (289)
T cd00951          22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-----GTATAIA-YAQAAEKAGA   95 (289)
T ss_pred             HHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC-----HHHHHHH-HHHHHHHCCC
T ss_conf             999999999977999999793300621289999999999999981898517406763-----1999999-9999997599


Q ss_pred             CEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH
Q ss_conf             10044677553322111024678999987664204420330002
Q gi|254780215|r   89 VAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS  132 (262)
Q Consensus        89 ~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~  132 (262)
                      -||= +-=.||..    ..|..+++..-++|...++|+++.-+.
T Consensus        96 dav~-v~pPy~~~----~~~~~l~~~~~~ia~a~~lpi~lYn~~  134 (289)
T cd00951          96 DGIL-LLPPYLTE----APQEGLYAHVEAVCKSTDLGVIVYNRA  134 (289)
T ss_pred             CEEE-ECCCCCCC----CCHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf             9999-76988889----999999999999998469986614887


No 402
>PRK11823 DNA repair protein RadA; Provisional
Probab=20.49  E-value=55  Score=13.96  Aligned_cols=54  Identities=13%  Similarity=0.152  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEE--ECHH----HHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHC
Q ss_conf             2467899998766420442033--0002----3335799985310003675331121464023443210
Q gi|254780215|r  107 EQKVVFLRHIEASRITGIPLVI--HSRS----ADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLE  169 (262)
Q Consensus       107 ~Q~~vF~~ql~lA~e~~~pv~i--H~r~----a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~  169 (262)
                      +=+++=.+.+++|++.+.|+++  |.-+    |...++|=|    -    -+|++ |.|+....-+++.
T Consensus       191 QVre~a~~L~~~AK~~~i~~~lVGHVTKdG~iAGPkvLEHm----V----DtVl~-fEGd~~~~~RiLR  250 (454)
T PRK11823        191 QVRECAAELTRLAKQSGIAVFLVGHVTKEGAIAGPRVLEHM----V----DTVLY-FEGDRHSRFRILR  250 (454)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHH----H----CEEEE-ECCCCCCCCEEEE
T ss_conf             99999999999997449828999977267764661452220----1----04687-5157665502456


No 403
>PRK08760 replicative DNA helicase; Provisional
Probab=20.47  E-value=63  Score=13.55  Aligned_cols=130  Identities=16%  Similarity=0.148  Sum_probs=70.4

Q ss_pred             HHHHHHHHHH--HHHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEECCCC--HHHH-------HHHHCCCCEE
Q ss_conf             4678999987--664204420330002--3335799985310003675331121464--0234-------4321035202
Q gi|254780215|r  108 QKVVFLRHIE--ASRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHCFSSS--QKLA-------DICLELGGYI  174 (262)
Q Consensus       108 Q~~vF~~ql~--lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~FsG~--~~~~-------~~~l~~g~y~  174 (262)
                      -|..|.-++.  .|.+.++||.+-+-.  +..-+.+++........ .   +--+|.  .+..       .++-++..|+
T Consensus       241 GKTalalnia~~~A~~~~~~V~~fSLEMs~~ql~~Rlls~~s~v~~-~---~i~~g~l~~~e~~~~~~a~~~l~~~~l~i  316 (476)
T PRK08760        241 GKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINA-Q---RLRTGALEDEDWARVTGAIKMLKETKIFI  316 (476)
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCH-H---HHHCCCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf             4789999999999983799789970369999999999998338976-7---77648999999999999999986088168


Q ss_pred             ECCCCCCHHH-HHHHHHHHHCCCCCCEEEEECCCCCCCC--C--CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             0233221133-3223333210566717983078667877--7--68875882449999999998728998999999
Q gi|254780215|r  175 SFTGMITFPK-YDALRAIARGIPMDRVLVETDSPYIVPV--S--CQGKRNEPAYVVNTAKALAKEKDVSYEDLMEE  245 (262)
Q Consensus       175 S~~g~i~~~~-~~~~~e~v~~iPldriLlETDsP~l~p~--~--~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~  245 (262)
                      -=++.++-.. ..+.|.+.+.-+++-+++  |  |+--.  +  ...+..+-+.|..-+..+|+-.++++--+++.
T Consensus       317 dD~~~~t~~~ir~~~R~~k~~~~l~lvvI--D--YLqL~~~~~~~~~r~~~v~~isr~lK~lAkel~vpVi~LsQL  388 (476)
T PRK08760        317 DDTPGVSPEVLRSKCRRLKREHDLGLIVI--D--YLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIALSQL  388 (476)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCCEEEE--E--HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf             57999999999999999987279987999--7--076415888874488999999999999999979978996315


No 404
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=20.45  E-value=63  Score=13.54  Aligned_cols=81  Identities=14%  Similarity=0.132  Sum_probs=33.4

Q ss_pred             CCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC-------CCEEECCCCC----CHHHHHHHHHHHH
Q ss_conf             2033000233357999853100036753311214640234432103-------5202023322----1133322333321
Q gi|254780215|r  125 PLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL-------GGYISFTGMI----TFPKYDALRAIAR  193 (262)
Q Consensus       125 pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~-------g~y~S~~g~i----~~~~~~~~~e~v~  193 (262)
                      -+.+|.--+.....++++.....+...++.=.-..+.+.+..+++.       +..=||+|.-    +++|-.++|+..+
T Consensus        83 ~It~H~Ea~~~~~~~~i~~Ik~~g~k~GlAlnP~Tpi~~i~~~l~~vD~VLvMsV~PGf~GQ~Fi~~~l~KI~~lr~~~~  162 (227)
T PRK09722         83 FITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVEAIKYYIHLADKVTVMTVDPGFAGQPFIPEMLDKIAELKAWRE  162 (227)
T ss_pred             EEEECHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99956565056599999999986997223338999866887667437989999888999876566889999999999998


Q ss_pred             CCCCCCEEEEECC
Q ss_conf             0566717983078
Q gi|254780215|r  194 GIPMDRVLVETDS  206 (262)
Q Consensus       194 ~iPldriLlETDs  206 (262)
                      .-.+ .+.+|-|+
T Consensus       163 ~~~~-~~~I~VDG  174 (227)
T PRK09722        163 REGL-EYEIEVDG  174 (227)
T ss_pred             HCCC-CCEEEEEC
T ss_conf             2599-82699989


No 405
>COG2602 Beta-lactamase class D [Defense mechanisms]
Probab=20.05  E-value=65  Score=13.49  Aligned_cols=71  Identities=18%  Similarity=0.459  Sum_probs=43.0

Q ss_pred             CCCCCCCCCCCCCC----HHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHH
Q ss_conf             44677553322111----02467899998766420442033000233357999853100036753311214640234432
Q gi|254780215|r   92 GETGLDRYHNAHTI----EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADIC  167 (262)
Q Consensus        92 GEiGLD~~~~~~~~----e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~  167 (262)
                      |..|   ||..+++    ..|..++++   |+. .++|.+-+.-+   -+-+++-  ...++ +-.+|.=||.--.... 
T Consensus       140 ~~~~---~Wl~~sLkIS~~EQv~fL~r---L~~-~~LPFs~~a~~---~v~~~m~--~~~~~-~~~l~GKTG~~~~~~~-  205 (254)
T COG2602         140 GNPG---FWLESSLKISPKEQVIFLRR---LAQ-NELPFSAKAQD---LVKAIMI--LERGP-NWELHGKTGTGIVNTK-  205 (254)
T ss_pred             CCCC---CEECCCCCCCHHHHHHHHHH---HHH-CCCCCCHHHHH---HHHHHHH--HHCCC-CEEEEECCCCCCCCCC-
T ss_conf             8998---11136652277999999999---974-66998878999---9987770--13089-7699840444653788-


Q ss_pred             HCCCCEEECC
Q ss_conf             1035202023
Q gi|254780215|r  168 LELGGYISFT  177 (262)
Q Consensus       168 l~~g~y~S~~  177 (262)
                       .+|||+|+-
T Consensus       206 -~~GWfVG~v  214 (254)
T COG2602         206 -NLGWFVGWV  214 (254)
T ss_pred             -CCEEEEEEE
T ss_conf             -750599999


No 406
>PRK13139 consensus
Probab=20.01  E-value=65  Score=13.48  Aligned_cols=23  Identities=13%  Similarity=0.076  Sum_probs=9.5

Q ss_pred             ECCCCHHHHHHHHCC--C--CEEECCC
Q ss_conf             214640234432103--5--2020233
Q gi|254780215|r  156 CFSSSQKLADICLEL--G--GYISFTG  178 (262)
Q Consensus       156 ~FsG~~~~~~~~l~~--g--~y~S~~g  178 (262)
                      +=+-+.+-++++.+.  |  |++|..|
T Consensus       153 aPtt~~~Ri~~i~~~a~gFiY~vs~~G  179 (254)
T PRK13139        153 APTSTDERMGKIAAAADGFIYCVARRG  179 (254)
T ss_pred             CCCCCHHHHHHHHHCCCCEEEEEECCC
T ss_conf             589998999999851698699996666


No 407
>pfam06555 consensus
Probab=20.01  E-value=65  Score=13.48  Aligned_cols=26  Identities=23%  Similarity=0.334  Sum_probs=14.5

Q ss_pred             CHHHHHHHHHHCCCCCCCEEC------CCCCC
Q ss_conf             788998853100133321004------46775
Q gi|254780215|r   72 NEVLVDELVCLASHPRVVAIG------ETGLD   97 (262)
Q Consensus        72 ~~~~~~~l~~l~~~~~~~aIG------EiGLD   97 (262)
                      .++..+.+..++.....|++|      |+||.
T Consensus        20 ~eeA~~~~~~lI~~g~sV~~GGS~Tl~e~Gl~   51 (200)
T pfam06555        20 KEEALELILELIPEGSTVGFGGSMTLFEIGVI   51 (200)
T ss_pred             HHHHHHHHHHHCCCCCEEEECCHHHHHHHCCH
T ss_conf             99999999986899899986931718874969


Done!