Query gi|254780215|ref|YP_003064628.1| hypothetical protein CLIBASIA_00500 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 262
No_of_seqs 138 out of 3434
Neff 7.2
Searched_HMMs 39220
Date Mon May 23 18:24:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780215.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00010 TIGR00010 hydrolase, 100.0 0 0 584.9 20.4 254 2-255 1-268 (269)
2 PRK10812 putative metallodepen 100.0 0 0 549.5 22.3 257 1-262 2-261 (265)
3 PRK10425 DNase TatD; Provision 100.0 0 0 548.3 22.7 252 2-255 1-257 (258)
4 cd01310 TatD_DNAse TatD like p 100.0 0 0 540.6 23.0 251 2-255 1-251 (251)
5 PRK11449 putative deoxyribonuc 100.0 0 0 539.0 22.5 251 2-255 5-257 (258)
6 COG0084 TatD Mg-dependent DNas 100.0 0 0 536.5 22.3 253 1-256 2-256 (256)
7 pfam01026 TatD_DNase TatD rela 100.0 0 0 525.0 23.2 252 3-255 1-255 (255)
8 KOG3020 consensus 100.0 0 0 413.8 18.4 253 1-255 17-295 (296)
9 COG1099 Predicted metal-depend 100.0 5.9E-32 1.5E-36 233.3 15.3 234 1-256 1-253 (254)
10 COG1831 Predicted metal-depend 99.7 4.9E-15 1.2E-19 120.8 16.5 242 2-257 7-283 (285)
11 pfam04909 Amidohydro_2 Amidohy 99.2 7.9E-09 2E-13 79.5 17.2 233 3-256 1-270 (270)
12 PRK09875 putative hydrolase; P 99.0 7.3E-08 1.9E-12 73.0 16.6 227 22-254 40-291 (292)
13 cd00530 PTE Phosphotriesterase 99.0 1.1E-07 2.7E-12 71.9 16.8 226 22-254 38-293 (293)
14 pfam02126 PTE Phosphotriestera 99.0 1.6E-07 4.1E-12 70.8 17.7 229 22-255 44-308 (308)
15 cd01292 metallo-dependent_hydr 98.9 1.4E-07 3.7E-12 71.1 16.1 234 2-252 1-274 (275)
16 cd01295 AdeC Adenine deaminase 98.7 2.8E-06 7.1E-11 62.5 16.7 234 2-256 11-254 (422)
17 COG2159 Predicted metal-depend 98.6 3.2E-06 8.1E-11 62.1 13.3 208 22-257 55-291 (293)
18 TIGR03583 EF_0837 probable ami 98.5 5.7E-06 1.5E-10 60.4 13.5 231 2-256 52-312 (365)
19 PRK12394 putative metallo-depe 98.5 4.6E-06 1.2E-10 61.0 12.9 233 2-256 59-319 (387)
20 COG3618 Predicted metal-depend 98.5 2.1E-05 5.3E-10 56.7 15.8 231 1-255 8-277 (279)
21 cd01317 DHOase_IIa Dihydroorot 98.4 7.9E-05 2E-09 52.8 16.7 240 2-256 16-324 (374)
22 cd01302 Cyclic_amidohydrolases 98.4 0.00014 3.7E-09 51.1 18.0 239 2-258 7-288 (337)
23 PRK07369 dihydroorotase; Provi 98.3 0.00017 4.3E-09 50.6 17.1 238 2-256 59-367 (419)
24 COG3964 Predicted amidohydrola 98.3 2.4E-05 6E-10 56.3 12.6 219 2-256 59-319 (386)
25 PRK02382 dihydroorotase; Provi 98.3 0.00023 5.9E-09 49.7 16.2 239 2-256 55-358 (440)
26 PRK10657 isoaspartyl dipeptida 98.2 0.00067 1.7E-08 46.6 18.4 247 2-256 57-338 (384)
27 PRK09357 pyrC dihydroorotase; 98.2 0.00064 1.6E-08 46.8 17.4 239 2-256 57-365 (425)
28 PRK07575 dihydroorotase; Provi 98.1 0.00046 1.2E-08 47.8 15.6 244 2-256 57-360 (439)
29 PRK08393 N-ethylammeline chlor 98.1 0.00066 1.7E-08 46.7 16.2 213 23-256 104-344 (419)
30 PRK11170 nagA N-acetylglucosam 98.1 0.0012 2.9E-08 45.1 17.4 234 2-256 55-345 (381)
31 PRK06189 allantoinase; Provisi 98.1 0.0012 3.1E-08 44.9 18.1 85 169-256 277-371 (433)
32 COG1735 Php Predicted metal-de 98.1 0.00014 3.6E-09 51.2 12.5 227 24-256 56-314 (316)
33 cd01312 Met_dep_hydrolase_D Me 98.0 0.00075 1.9E-08 46.3 15.3 211 23-256 82-335 (381)
34 PRK10027 cryptic adenine deami 98.0 0.00044 1.1E-08 47.9 13.9 233 2-256 86-329 (588)
35 cd01300 YtcJ_like YtcJ_like me 98.0 0.0016 4.1E-08 44.2 16.8 138 109-256 294-462 (479)
36 PRK08203 hydroxydechloroatrazi 98.0 0.0018 4.6E-08 43.8 16.9 138 109-256 217-374 (456)
37 PRK13404 dihydropyrimidinase; 98.0 0.0023 5.9E-08 43.1 17.3 34 223-256 351-384 (476)
38 PRK09059 dihydroorotase; Valid 97.9 0.0025 6.5E-08 42.8 16.8 237 2-256 62-369 (429)
39 cd01307 Met_dep_hydrolase_B Me 97.9 0.0022 5.5E-08 43.3 15.6 134 109-256 148-296 (338)
40 cd01298 ATZ_TRZ_like TRZ/ATZ f 97.9 0.0028 7.1E-08 42.6 16.1 140 109-256 193-351 (411)
41 cd01294 DHOase Dihydroorotase 97.9 0.003 7.7E-08 42.3 18.4 237 2-255 6-296 (335)
42 cd01314 D-HYD D-hydantoinases 97.9 0.0031 7.8E-08 42.3 16.0 122 2-132 53-184 (447)
43 PRK09237 dihydroorotase; Provi 97.9 0.00071 1.8E-08 46.5 12.7 230 2-256 59-319 (384)
44 PRK06038 N-ethylammeline chlor 97.9 0.0026 6.5E-08 42.8 15.5 137 109-256 191-349 (432)
45 PRK08418 chlorohydrolase; Prov 97.9 0.0015 3.7E-08 44.4 13.9 212 23-256 109-358 (407)
46 COG1001 AdeC Adenine deaminase 97.8 0.0021 5.3E-08 43.4 14.6 229 2-256 79-322 (584)
47 PRK09356 imidazolonepropionase 97.8 0.00086 2.2E-08 45.9 12.6 131 112-257 223-359 (401)
48 PRK08323 dihydropyrimidinase; 97.8 0.0046 1.2E-07 41.1 16.7 33 224-256 347-379 (463)
49 PRK06380 metal-dependent hydro 97.8 0.0046 1.2E-07 41.1 15.8 137 109-256 185-344 (418)
50 PRK07228 N-ethylammeline chlor 97.8 0.0036 9.1E-08 41.8 14.6 140 109-256 198-356 (445)
51 PRK08044 allantoinase; Provisi 97.7 0.0053 1.3E-07 40.7 18.4 240 2-256 55-374 (449)
52 PRK08204 hypothetical protein; 97.7 0.004 1E-07 41.5 14.7 139 109-256 202-363 (451)
53 PRK08392 hypothetical protein; 97.7 0.00082 2.1E-08 46.1 11.0 150 3-179 1-182 (215)
54 PRK09045 N-ethylammeline chlor 97.7 0.0061 1.6E-07 40.3 14.9 137 109-256 202-360 (444)
55 cd01293 Bact_CD Bacterial cyto 97.7 0.0067 1.7E-07 40.0 17.9 217 21-256 101-357 (398)
56 PRK07627 dihydroorotase; Provi 97.7 0.0072 1.8E-07 39.8 17.4 237 2-256 57-364 (425)
57 PRK06886 hypothetical protein; 97.6 0.0074 1.9E-07 39.7 16.7 217 22-255 75-326 (328)
58 PRK01211 dihydroorotase; Provi 97.6 0.0079 2E-07 39.5 15.7 231 2-256 50-335 (413)
59 PRK07213 chlorohydrolase; Prov 97.6 0.0088 2.2E-07 39.2 16.9 135 110-256 181-327 (378)
60 PRK12393 amidohydrolase; Provi 97.6 0.009 2.3E-07 39.2 16.8 137 109-256 219-376 (459)
61 cd01315 L-HYD_ALN L-Hydantoina 97.6 0.0092 2.4E-07 39.1 18.3 35 222-256 338-372 (447)
62 cd01296 Imidazolone-5PH Imidaz 97.6 0.0042 1.1E-07 41.4 12.6 130 112-256 195-329 (371)
63 PRK08417 dihydroorotase; Provi 97.5 0.01 2.6E-07 38.8 18.3 35 222-256 300-334 (387)
64 TIGR03178 allantoinase allanto 97.5 0.011 2.8E-07 38.6 17.2 33 223-256 336-368 (442)
65 cd01318 DHOase_IIb Dihydroorot 97.5 0.011 2.8E-07 38.6 16.7 143 106-256 154-306 (361)
66 COG0402 SsnA Cytosine deaminas 97.5 0.012 3E-07 38.4 15.2 221 21-256 108-355 (421)
67 cd01303 GDEase Guanine deamina 97.4 0.014 3.5E-07 37.9 16.9 215 22-256 117-370 (429)
68 PRK07328 histidinol-phosphatas 97.4 0.016 4E-07 37.6 15.0 126 1-130 1-160 (268)
69 PRK06687 chlorohydrolase; Vali 97.4 0.016 4E-07 37.5 15.4 137 109-256 195-353 (422)
70 PRK09230 cytosine deaminase; P 97.4 0.016 4.2E-07 37.4 14.5 220 21-256 107-363 (426)
71 PRK05451 dihydroorotase; Provi 97.3 0.018 4.5E-07 37.2 16.5 234 3-256 11-303 (345)
72 PRK06846 deaminase; Validated 97.3 0.0023 5.8E-08 43.1 8.9 198 20-241 118-342 (410)
73 PRK09060 dihydroorotase; Valid 97.3 0.022 5.6E-07 36.6 15.5 244 2-256 58-363 (444)
74 PRK06151 N-ethylammeline chlor 97.2 0.028 7.2E-07 35.8 16.5 215 23-256 114-375 (480)
75 PRK09236 dihydroorotase; Revie 97.1 0.03 7.6E-07 35.7 18.6 84 169-256 274-367 (444)
76 PRK07583 cytosine deaminase; V 97.0 0.01 2.6E-07 38.8 9.6 216 22-256 128-379 (437)
77 cd01316 CAD_DHOase The eukaryo 97.0 0.042 1.1E-06 34.7 17.6 238 2-256 8-280 (344)
78 cd00854 NagA N-acetylglucosami 96.9 0.043 1.1E-06 34.6 16.9 137 115-256 177-343 (374)
79 PRK09248 putative hydrolase; V 96.8 0.031 8E-07 35.6 10.9 39 1-39 3-42 (246)
80 cd01308 Isoaspartyl-dipeptidas 96.8 0.061 1.5E-06 33.6 18.6 65 192-256 271-341 (387)
81 COG0044 PyrC Dihydroorotase an 96.6 0.076 1.9E-06 33.0 13.2 118 2-133 55-181 (430)
82 TIGR00857 pyrC_multi dihydroor 96.6 0.0087 2.2E-07 39.3 6.4 249 2-255 47-396 (459)
83 PRK04250 dihydroorotase; Provi 96.6 0.082 2.1E-06 32.8 15.0 241 2-256 54-331 (408)
84 PRK07203 putative chlorohydrol 96.5 0.02 5.1E-07 36.8 8.1 136 109-256 204-357 (442)
85 COG1387 HIS2 Histidinol phosph 96.5 0.084 2.1E-06 32.7 11.0 156 1-179 1-194 (237)
86 PRK09228 guanine deaminase; Pr 96.4 0.11 2.8E-06 32.0 17.8 138 110-256 210-366 (429)
87 COG4464 CapC Capsular polysacc 96.3 0.053 1.4E-06 34.0 9.0 207 2-254 1-232 (254)
88 COG1820 NagA N-acetylglucosami 96.3 0.12 3.1E-06 31.6 15.6 232 2-255 54-343 (380)
89 TIGR03314 Se_ssnA putative sel 96.2 0.068 1.7E-06 33.3 9.4 136 109-256 203-356 (441)
90 TIGR03179 gua_deam guanine dea 96.2 0.13 3.4E-06 31.4 16.4 215 23-256 120-365 (427)
91 pfam01979 Amidohydro_1 Amidohy 95.9 0.18 4.6E-06 30.5 15.3 136 116-258 149-290 (307)
92 PRK09229 N-formimino-L-glutama 95.7 0.21 5.3E-06 30.1 15.8 137 109-256 215-377 (457)
93 PRK05588 histidinol-phosphatas 95.7 0.21 5.4E-06 30.1 12.7 123 1-130 1-146 (256)
94 PRK13206 ureC urease subunit a 95.7 0.11 2.8E-06 31.9 8.4 115 3-141 138-270 (573)
95 PRK07572 cytosine deaminase; V 95.6 0.23 5.8E-06 29.8 16.3 218 25-256 106-358 (425)
96 PRK13985 UreB urease subunit b 95.5 0.12 3E-06 31.8 8.1 115 3-141 132-264 (568)
97 COG1574 Predicted metal-depend 95.4 0.27 6.9E-06 29.3 14.7 221 21-256 215-486 (535)
98 PRK00912 ribonuclease P protei 95.4 0.27 7E-06 29.3 10.3 96 150-256 107-219 (237)
99 PRK13309 ureC urease subunit a 95.2 0.13 3.4E-06 31.4 7.6 115 3-141 136-268 (572)
100 PRK13207 ureC urease subunit a 95.2 0.16 4.1E-06 30.9 8.0 115 3-141 132-264 (568)
101 cd01311 PDC_hydrolase 2-pyrone 95.1 0.33 8.4E-06 28.8 17.6 226 2-252 2-262 (263)
102 pfam01244 Peptidase_M19 Membra 95.1 0.34 8.7E-06 28.6 10.5 144 109-255 156-315 (316)
103 TIGR01792 urease_alph urease, 95.0 0.1 2.6E-06 32.1 6.6 115 3-141 140-272 (605)
104 PRK13308 ureC urease subunit a 95.0 0.19 4.8E-06 30.4 7.8 105 3-131 136-249 (569)
105 cd01299 Met_dep_hydrolase_A Me 94.9 0.37 9.4E-06 28.4 15.8 133 109-256 159-313 (342)
106 cd00375 Urease_alpha Urease al 94.9 0.21 5.3E-06 30.1 7.9 105 3-131 132-249 (567)
107 cd01309 Met_dep_hydrolase_C Me 94.7 0.42 1.1E-05 28.1 9.4 120 122-257 191-320 (359)
108 COG1228 HutI Imidazolonepropio 94.6 0.44 1.1E-05 27.9 12.6 127 113-257 223-356 (406)
109 COG2355 Zn-dependent dipeptida 94.4 0.49 1.2E-05 27.6 10.1 135 113-257 152-310 (313)
110 PTZ00124 adenosine deaminase; 94.2 0.55 1.4E-05 27.3 9.6 127 112-254 208-348 (362)
111 PRK00369 pyrC dihydroorotase; 94.1 0.58 1.5E-05 27.1 15.7 221 2-256 50-318 (393)
112 TIGR00674 dapA dihydrodipicoli 93.2 0.82 2.1E-05 26.1 10.6 157 17-194 20-219 (288)
113 TIGR01430 aden_deam adenosine 93.1 0.82 2.1E-05 26.1 8.5 145 83-252 165-330 (346)
114 PRK05985 cytosine deaminase; P 92.8 0.93 2.4E-05 25.7 15.9 138 111-256 193-347 (398)
115 PRK08123 histidinol-phosphatas 92.2 1.1 2.8E-05 25.3 11.9 68 1-68 1-92 (266)
116 COG0804 UreC Urea amidohydrola 92.2 0.9 2.3E-05 25.8 7.2 105 3-131 132-249 (568)
117 PRK09061 D-glutamate deacylase 91.9 1.2 3E-05 25.1 16.1 27 229-255 394-420 (496)
118 pfam07969 Amidohydro_3 Amidohy 91.7 1.2 3.1E-05 25.0 13.3 135 110-256 213-375 (392)
119 KOG3968 consensus 91.4 1.3 3.4E-05 24.7 10.8 223 18-258 122-379 (439)
120 TIGR03473 HpnK hopanoid biosyn 90.8 0.51 1.3E-05 27.5 4.7 57 10-69 9-65 (283)
121 cd01301 rDP_like renal dipepti 90.4 1.7 4.2E-05 24.1 9.1 141 110-253 153-309 (309)
122 pfam02679 ComA (2R)-phospho-3- 90.3 0.85 2.2E-05 26.0 5.6 169 25-206 10-207 (245)
123 pfam04794 YdjC YdjC-like prote 90.2 1.4 3.5E-05 24.6 6.5 60 8-70 6-65 (261)
124 PRK08609 hypothetical protein; 90.1 1.6 4.2E-05 24.1 6.8 15 18-32 351-365 (570)
125 PRK12310 hydroxylamine reducta 89.7 1.9 4.7E-05 23.8 12.0 187 31-242 123-361 (429)
126 PRK07945 hypothetical protein; 88.9 1.9 4.9E-05 23.6 6.5 33 4-36 99-131 (335)
127 PRK05290 hydroxylamine reducta 88.8 2.2 5.5E-05 23.3 12.5 189 31-243 233-473 (540)
128 PRK09358 adenosine deaminase; 88.4 2.3 5.8E-05 23.1 16.5 143 86-252 160-313 (333)
129 cd01320 ADA Adenosine deaminas 88.1 2.4 6.1E-05 23.0 16.7 143 86-252 156-309 (325)
130 TIGR01858 tag_bisphos_ald clas 87.2 0.89 2.3E-05 25.9 3.9 107 7-131 77-208 (282)
131 cd04731 HisF The cyclase subun 87.2 2.7 6.9E-05 22.7 6.4 38 15-52 26-69 (243)
132 KOG4342 consensus 87.0 0.59 1.5E-05 27.1 2.9 54 41-94 308-362 (1078)
133 cd01313 Met_dep_hydrolase_E Me 86.8 2.8 7.2E-05 22.6 15.6 135 110-256 207-366 (418)
134 PRK01033 imidazole glycerol ph 86.2 2.1 5.4E-05 23.4 5.4 31 24-54 91-121 (253)
135 PRK07329 hypothetical protein; 85.4 3.3 8.5E-05 22.1 6.4 117 2-129 1-145 (246)
136 PRK04326 methionine synthase; 85.1 3.4 8.7E-05 22.0 7.1 93 111-208 194-300 (330)
137 PRK05678 succinyl-CoA syntheta 84.7 3.6 9.1E-05 21.9 8.2 51 19-69 79-143 (289)
138 PRK02083 imidazole glycerol ph 83.7 3 7.8E-05 22.3 5.2 20 17-36 31-50 (253)
139 cd01297 D-aminoacylase D-amino 83.1 4.1 0.00011 21.4 14.1 135 113-256 202-354 (415)
140 pfam00962 A_deaminase Adenosin 83.1 4.1 0.00011 21.4 17.2 126 110-252 178-314 (329)
141 cd01914 HCP Hybrid cluster pro 83.0 4.2 0.00011 21.4 11.8 187 31-242 118-357 (423)
142 PRK02621 consensus 82.9 2.5 6.4E-05 22.9 4.6 22 16-37 30-51 (254)
143 PRK06361 hypothetical protein; 82.7 4.3 0.00011 21.4 8.6 87 160-257 129-216 (216)
144 PRK02747 consensus 82.4 3.5 9E-05 21.9 5.1 21 16-36 30-50 (257)
145 KOG4245 consensus 81.6 4.7 0.00012 21.1 8.3 189 46-259 56-289 (297)
146 COG0418 PyrC Dihydroorotase [N 81.5 4.7 0.00012 21.1 13.0 142 109-256 117-303 (344)
147 COG0685 MetF 5,10-methylenetet 81.3 4.8 0.00012 21.0 7.0 115 5-128 80-208 (291)
148 PRK01659 consensus 81.1 2.7 6.8E-05 22.7 4.1 22 16-37 30-51 (252)
149 PRK00830 consensus 80.6 3.2 8.2E-05 22.2 4.4 22 15-36 33-54 (273)
150 KOG2584 consensus 79.7 5.4 0.00014 20.7 8.0 166 88-256 211-393 (522)
151 PRK07998 gatY putative fructos 79.6 4.6 0.00012 21.1 5.0 59 138-196 188-248 (283)
152 PRK02145 consensus 78.5 4.6 0.00012 21.1 4.7 22 16-37 31-52 (257)
153 cd06564 GH20_DspB_LnbB-like Gl 78.4 5.9 0.00015 20.4 7.7 146 16-174 82-238 (326)
154 pfam08965 DUF1870 Domain of un 78.4 2.5 6.3E-05 22.9 3.3 47 214-260 36-86 (117)
155 COG1904 UxaC Glucuronate isome 78.3 4.6 0.00012 21.1 4.6 53 2-55 27-92 (463)
156 TIGR01885 Orn_aminotrans ornit 78.0 4.7 0.00012 21.1 4.6 194 9-239 76-329 (426)
157 cd01305 archeal_chlorohydrolas 78.0 6.1 0.00015 20.3 7.1 125 111-251 126-261 (263)
158 PRK11148 cyclic 3',5'-adenosin 77.9 6.1 0.00016 20.3 11.6 154 17-181 41-224 (275)
159 TIGR03572 WbuZ glycosyl amidat 76.6 6.1 0.00016 20.3 4.9 38 15-52 29-72 (232)
160 pfam02614 UxaC Glucuronate iso 75.9 3.7 9.4E-05 21.8 3.6 16 240-255 446-461 (465)
161 PRK09819 alpha-mannosidase; Pr 75.0 2.7 6.8E-05 22.7 2.7 48 41-88 31-81 (874)
162 pfam03063 Prismane Prismane/CO 74.7 7.4 0.00019 19.8 10.0 90 153-242 295-409 (477)
163 cd00453 FTBP_aldolase_II Fruct 74.6 6.6 0.00017 20.1 4.6 48 149-196 242-291 (340)
164 cd06394 PBP1_iGluR_Kainate_KA1 74.5 7.5 0.00019 19.7 7.6 132 22-169 58-204 (333)
165 PRK13597 imidazole glycerol ph 74.5 6.4 0.00016 20.2 4.5 25 15-39 30-54 (252)
166 PRK08185 hypothetical protein; 74.4 7.5 0.00019 19.7 5.1 57 138-194 187-245 (283)
167 PRK03220 consensus 74.2 5.4 0.00014 20.7 4.1 38 15-52 30-73 (257)
168 COG0613 Predicted metal-depend 73.7 5.3 0.00014 20.7 3.9 35 1-35 2-36 (258)
169 PRK04281 consensus 73.3 8 0.0002 19.5 5.2 22 16-37 30-51 (254)
170 PRK06806 fructose-bisphosphate 73.0 8.1 0.00021 19.5 4.9 59 138-196 189-249 (281)
171 TIGR03239 GarL 2-dehydro-3-deo 72.7 8.3 0.00021 19.4 6.0 142 19-183 74-236 (249)
172 cd00443 ADA_AMPD Adenosine/AMP 72.6 8.3 0.00021 19.4 10.7 144 86-252 134-289 (305)
173 PRK05211 consensus 72.1 8.5 0.00022 19.4 5.2 35 22-56 80-114 (248)
174 COG5016 Pyruvate/oxaloacetate 71.4 8.8 0.00022 19.3 7.9 111 12-132 93-208 (472)
175 PRK02925 glucuronate isomerase 71.4 4.9 0.00013 20.9 3.3 15 241-255 451-465 (466)
176 cd03311 CIMS_C_terminal_like C 71.3 8.9 0.00023 19.2 7.3 82 122-208 207-311 (332)
177 COG0191 Fba Fructose/tagatose 71.0 9 0.00023 19.2 4.8 59 138-196 193-253 (286)
178 cd00947 TBP_aldolase_IIB Tagat 71.0 9 0.00023 19.2 4.8 59 138-196 185-245 (276)
179 PRK12738 kbaY tagatose-bisphos 70.8 9.1 0.00023 19.2 6.2 60 138-197 191-252 (286)
180 smart00481 POLIIIAc DNA polyme 70.7 9.1 0.00023 19.1 5.1 58 4-63 1-61 (67)
181 PRK02134 hypothetical protein; 70.6 9.2 0.00023 19.1 7.0 56 10-68 10-65 (253)
182 TIGR03471 HpnJ hopanoid biosyn 70.5 9.2 0.00023 19.1 6.4 53 15-69 56-111 (472)
183 TIGR01975 isoAsp_dipep beta-as 70.1 9.4 0.00024 19.1 4.9 242 2-256 58-343 (391)
184 PRK06801 hypothetical protein; 69.9 9.5 0.00024 19.0 4.9 46 149-194 203-250 (286)
185 PRK09545 znuA high-affinity zi 69.8 9.5 0.00024 19.0 7.8 20 187-206 240-259 (308)
186 PRK09389 (R)-citramalate synth 68.6 10 0.00026 18.9 5.2 16 117-132 179-194 (487)
187 PTZ00187 succinyl-CoA syntheta 68.1 10 0.00026 18.8 8.3 51 20-70 95-160 (309)
188 PRK10558 alpha-dehydro-beta-de 67.8 10 0.00027 18.8 5.0 35 19-54 81-116 (256)
189 COG5014 Predicted Fe-S oxidore 67.8 10 0.00027 18.8 4.8 18 188-205 109-126 (228)
190 pfam01116 F_bP_aldolase Fructo 67.2 11 0.00027 18.7 4.9 57 138-194 190-248 (283)
191 pfam02811 PHP PHP domain. The 67.0 11 0.00028 18.7 5.8 62 3-64 1-65 (173)
192 cd00537 MTHFR Methylenetetrahy 66.7 11 0.00028 18.6 6.8 116 4-128 60-193 (274)
193 TIGR01108 oadA oxaloacetate de 66.7 11 0.00028 18.6 8.0 180 11-202 85-291 (616)
194 PRK09195 gatY tagatose-bisphos 64.5 12 0.00031 18.3 4.9 58 139-196 192-251 (284)
195 PRK13306 ulaD 3-keto-L-gulonat 64.5 12 0.00031 18.3 7.5 85 110-202 93-190 (216)
196 PRK11858 aksA trans-homoaconit 64.3 12 0.00031 18.3 7.3 17 117-133 182-198 (378)
197 TIGR03569 NeuB_NnaB N-acetylne 63.3 12 0.0003 18.4 3.9 150 18-179 18-202 (329)
198 LOAD_php consensus 62.6 9.7 0.00025 19.0 3.4 63 2-64 1-68 (206)
199 TIGR02090 LEU1_arch isopropylm 62.6 13 0.00033 18.1 7.2 162 22-202 78-277 (371)
200 PRK00048 dihydrodipicolinate r 61.9 13 0.00034 18.0 6.1 35 110-144 80-114 (265)
201 PRK07084 fructose-bisphosphate 61.7 14 0.00035 18.0 11.4 81 111-196 204-287 (321)
202 COG0289 DapB Dihydrodipicolina 61.1 14 0.00035 17.9 5.9 162 32-239 4-182 (266)
203 PRK12857 putative aldolase; Re 61.0 14 0.00036 17.9 4.7 57 138-194 191-249 (284)
204 PRK09196 fructose-1,6-bisphosp 60.9 14 0.00036 17.9 11.2 182 4-196 77-296 (347)
205 pfam01717 Meth_synt_2 Cobalami 60.4 14 0.00036 17.9 4.0 81 122-208 209-303 (324)
206 TIGR00007 TIGR00007 phosphorib 60.1 7.1 0.00018 19.9 2.3 47 160-206 84-130 (241)
207 KOG0081 consensus 59.8 12 0.00031 18.4 3.5 50 73-130 110-162 (219)
208 PRK03170 dihydrodipicolinate s 58.5 15 0.00039 17.7 12.4 104 17-130 23-134 (292)
209 TIGR01703 hybrid_clust hydroxy 58.0 16 0.0004 17.6 7.2 190 31-242 247-499 (567)
210 COG0106 HisA Phosphoribosylfor 57.4 16 0.00041 17.5 4.2 33 25-57 93-125 (241)
211 PRK00957 methionine synthase; 57.2 16 0.00041 17.5 4.7 95 105-207 177-283 (307)
212 COG0074 SucD Succinyl-CoA synt 56.6 16 0.00042 17.4 8.0 144 19-174 79-250 (293)
213 KOG2902 consensus 55.5 13 0.00034 18.0 3.1 229 3-255 11-299 (344)
214 TIGR02538 type_IV_pilB type IV 55.2 13 0.00033 18.1 3.0 113 12-142 308-441 (577)
215 PRK10528 multifunctional acyl- 55.0 17 0.00045 17.3 4.4 54 73-128 57-113 (191)
216 TIGR02075 pyrH_bact uridylate 54.8 18 0.00045 17.3 7.1 113 26-143 89-228 (236)
217 TIGR01748 rhaA L-rhamnose isom 53.6 8.3 0.00021 19.4 1.8 35 87-121 313-356 (415)
218 PRK12737 gatY tagatose-bisphos 52.8 19 0.00048 17.0 6.3 57 138-194 191-249 (284)
219 KOG2310 consensus 52.8 18 0.00046 17.2 3.4 52 2-53 17-83 (646)
220 COG2176 PolC DNA polymerase II 52.4 19 0.00049 17.0 5.6 18 239-256 828-845 (1444)
221 PTZ00065 60S ribosomal protein 52.3 7 0.00018 19.9 1.2 42 163-211 3-46 (130)
222 PRK13399 fructose-1,6-bisphosp 52.2 19 0.00049 17.0 11.6 80 112-196 214-296 (347)
223 PRK06740 histidinol-phosphatas 52.0 19 0.0005 17.0 4.6 81 1-97 1-81 (338)
224 cd06842 PLPDE_III_Y4yA_like Ty 50.8 20 0.00052 16.8 5.7 45 19-66 93-138 (423)
225 PRK08082 consensus 50.6 20 0.00052 16.8 3.4 129 108-244 215-362 (453)
226 pfam02630 SCO1-SenC SCO1/SenC. 49.6 21 0.00054 16.7 3.6 52 123-176 73-125 (159)
227 COG3384 Aromatic ring-opening 49.5 16 0.0004 17.6 2.7 85 13-99 27-119 (268)
228 pfam01297 SBP_bac_9 Periplasmi 49.0 22 0.00055 16.7 8.0 21 22-44 42-62 (272)
229 TIGR02717 AcCoA-syn-alpha acet 48.8 22 0.00055 16.6 4.2 48 17-64 79-136 (457)
230 pfam04273 DUF442 Putative phos 48.8 15 0.00039 17.7 2.5 41 93-136 55-99 (110)
231 PRK07315 fructose-bisphosphate 48.3 22 0.00057 16.6 4.7 60 137-196 189-251 (293)
232 COG0313 Predicted methyltransf 47.8 23 0.00058 16.5 4.1 23 224-246 249-271 (275)
233 cd01016 TroA Metal binding pro 47.0 23 0.00059 16.5 7.9 12 33-44 28-39 (276)
234 PRK13587 1-(5-phosphoribosyl)- 46.8 23 0.00059 16.4 4.6 14 159-172 202-215 (234)
235 TIGR01178 ade adenine deaminas 46.5 24 0.0006 16.4 10.3 235 2-256 63-312 (575)
236 pfam04183 IucA_IucC IucA / Iuc 46.1 7.6 0.00019 19.7 0.6 68 57-133 86-154 (237)
237 COG1618 Predicted nucleotide k 45.9 24 0.00061 16.3 3.8 50 77-134 92-143 (179)
238 COG3653 N-acyl-D-aspartate/D-g 45.5 24 0.00062 16.3 5.8 34 217-250 376-410 (579)
239 pfam02669 KdpC K+-transporting 44.9 20 0.00051 16.9 2.6 40 220-259 133-173 (188)
240 cd01145 TroA_c Periplasmic bin 44.7 25 0.00064 16.2 7.3 26 188-213 176-201 (203)
241 COG3453 Uncharacterized protei 44.3 19 0.00048 17.1 2.4 44 91-137 54-101 (130)
242 cd06563 GH20_chitobiase-like T 42.3 27 0.0007 16.0 10.1 145 16-177 86-260 (357)
243 pfam07228 SpoIIE Stage II spor 41.9 28 0.00071 15.9 5.9 60 191-254 117-176 (192)
244 TIGR00418 thrS threonyl-tRNA s 41.8 17 0.00044 17.3 1.9 111 120-248 452-593 (595)
245 cd01304 FMDH_A Formylmethanofu 41.7 28 0.00071 15.9 4.5 146 109-256 208-446 (541)
246 PRK13118 consensus 41.6 28 0.00071 15.9 9.7 104 112-227 111-223 (269)
247 PRK00979 tetrahydromethanopter 41.5 28 0.00071 15.9 6.4 143 26-170 66-243 (310)
248 PRK09165 replicative DNA helic 41.5 28 0.00072 15.9 4.4 128 108-243 217-378 (484)
249 PRK08610 fructose-bisphosphate 41.4 28 0.00072 15.9 4.8 59 138-196 192-252 (286)
250 pfam09124 Endonuc-dimeriz T4 r 41.1 18 0.00047 17.1 2.0 52 63-119 1-52 (54)
251 cd06382 PBP1_iGluR_Kainate N-t 41.0 29 0.00073 15.9 3.3 55 112-169 145-199 (327)
252 TIGR03249 KdgD 5-dehydro-4-deo 40.9 29 0.00073 15.8 11.4 105 18-133 28-140 (296)
253 TIGR02311 HpaI 2,4-dihydroxyhe 40.9 26 0.00066 16.1 2.7 142 22-182 77-236 (249)
254 PRK13120 consensus 40.8 29 0.00073 15.8 10.0 21 158-178 161-185 (285)
255 cd06533 Glyco_transf_WecG_TagA 40.7 29 0.00074 15.8 6.4 97 18-133 35-133 (171)
256 KOG1939 consensus 40.6 29 0.00074 15.8 3.1 29 207-235 400-428 (1247)
257 pfam07611 DUF1574 Protein of u 40.1 29 0.00075 15.8 3.7 44 100-143 242-285 (345)
258 TIGR00247 TIGR00247 conserved 39.4 12 0.0003 18.4 0.7 14 201-214 294-314 (373)
259 cd00408 DHDPS-like Dihydrodipi 39.4 30 0.00077 15.7 12.2 104 18-131 20-131 (281)
260 COG1453 Predicted oxidoreducta 39.3 30 0.00077 15.7 9.6 37 217-254 251-287 (391)
261 PRK00915 2-isopropylmalate syn 39.1 30 0.00078 15.7 6.7 27 25-51 35-63 (511)
262 PRK13135 consensus 39.0 31 0.00078 15.7 9.7 65 154-227 152-222 (267)
263 pfam08981 consensus 38.8 31 0.00079 15.6 6.6 67 15-81 11-80 (181)
264 PRK09121 5-methyltetrahydropte 38.7 31 0.00079 15.6 6.3 24 185-208 289-312 (339)
265 TIGR00300 TIGR00300 conserved 38.7 7.5 0.00019 19.7 -0.3 115 53-172 94-240 (418)
266 PRK13305 sgbH 3-keto-L-gulonat 37.8 32 0.00081 15.5 10.5 84 111-202 94-190 (220)
267 pfam00701 DHDPS Dihydrodipicol 37.8 32 0.00081 15.5 12.1 104 17-130 23-134 (289)
268 COG0036 Rpe Pentose-5-phosphat 37.8 32 0.00081 15.5 4.1 82 124-206 86-176 (220)
269 TIGR01859 fruc_bis_ald_ fructo 37.7 32 0.00082 15.5 4.7 184 6-206 85-306 (339)
270 PRK06233 hypothetical protein; 37.6 32 0.00082 15.5 4.7 86 124-212 237-346 (372)
271 PRK13116 consensus 37.2 33 0.00083 15.5 10.2 21 158-178 157-181 (278)
272 pfam08809 DUF1799 Phage relate 36.8 25 0.00065 16.2 2.1 41 59-99 2-49 (83)
273 COG3836 HpcH 2,4-dihydroxyhept 36.7 33 0.00085 15.4 5.5 147 18-181 78-240 (255)
274 cd01017 AdcA Metal binding pro 35.8 34 0.00087 15.3 8.0 21 22-44 47-67 (282)
275 PRK12444 threonyl-tRNA synthet 35.6 35 0.00088 15.3 3.9 56 122-177 506-575 (639)
276 PRK13112 consensus 35.4 35 0.00089 15.3 10.3 47 158-209 158-210 (279)
277 TIGR01579 MiaB-like-C MiaB-lik 35.3 35 0.00089 15.3 2.7 168 72-257 242-446 (492)
278 pfam06187 DUF993 Protein of un 35.2 35 0.00089 15.3 4.8 64 94-157 114-186 (382)
279 cd03315 MLE_like Muconate lact 34.6 36 0.00091 15.2 5.6 133 19-169 90-225 (265)
280 PRK00748 1-(5-phosphoribosyl)- 34.3 36 0.00092 15.2 4.3 175 14-195 27-238 (241)
281 COG2247 LytB Putative cell wal 34.2 36 0.00092 15.2 7.4 121 25-156 23-162 (337)
282 COG1647 Esterase/lipase [Gener 34.2 16 0.00042 17.5 0.8 15 240-254 227-241 (243)
283 COG0329 DapA Dihydrodipicolina 34.1 36 0.00093 15.2 11.9 149 18-179 27-212 (299)
284 TIGR03586 PseI pseudaminic aci 34.0 37 0.00093 15.1 3.8 64 114-179 125-201 (327)
285 TIGR00537 hemK_rel_arch methyl 34.0 34 0.00086 15.4 2.4 46 134-179 123-169 (183)
286 TIGR02716 C20_methyl_CrtF C-20 33.8 37 0.00094 15.1 4.3 154 18-198 138-300 (306)
287 PRK13586 1-(5-phosphoribosyl)- 33.4 37 0.00095 15.1 3.9 50 15-64 28-82 (231)
288 PRK13113 consensus 33.1 38 0.00096 15.0 10.0 26 154-179 153-182 (263)
289 PRK05835 fructose-bisphosphate 33.1 38 0.00096 15.0 4.8 77 112-194 193-272 (307)
290 cd00950 DHDPS Dihydrodipicolin 32.9 38 0.00097 15.0 11.5 104 17-130 22-133 (284)
291 cd01019 ZnuA Zinc binding prot 32.7 38 0.00098 15.0 7.9 22 22-45 47-68 (286)
292 COG0816 Predicted endonuclease 32.6 38 0.00098 15.0 5.5 67 74-143 40-109 (141)
293 PRK00865 glutamate racemase; P 32.6 39 0.00098 15.0 7.5 41 21-65 56-96 (262)
294 pfam04072 LCM Leucine carboxyl 32.6 30 0.00076 15.7 1.9 11 87-98 73-83 (175)
295 pfam05705 DUF829 Eukaryotic pr 32.5 35 0.0009 15.2 2.3 18 221-239 193-210 (239)
296 PRK05748 replicative DNA helic 32.5 39 0.00098 15.0 4.3 131 108-244 215-363 (448)
297 TIGR01093 aroD 3-dehydroquinat 32.3 39 0.00099 15.0 5.3 90 73-165 12-142 (239)
298 PRK09856 fructoselysine 3-epim 32.2 39 0.001 15.0 7.8 123 17-143 14-170 (276)
299 TIGR01856 hisJ_fam histidinol 32.2 39 0.001 14.9 7.5 150 3-163 1-211 (301)
300 pfam03808 Glyco_tran_WecB Glyc 32.1 39 0.001 14.9 6.1 103 18-142 37-141 (172)
301 PRK13129 consensus 32.1 39 0.001 14.9 9.6 68 152-229 152-226 (267)
302 cd02968 SCO SCO (an acronym fo 31.8 40 0.001 14.9 3.7 52 123-176 59-111 (142)
303 TIGR00250 TIGR00250 conserved 31.8 40 0.001 14.9 4.5 77 60-139 23-107 (133)
304 COG1456 CdhE CO dehydrogenase/ 31.5 40 0.001 14.9 10.2 32 111-142 147-180 (467)
305 PRK13585 1-(5-phosphoribosyl)- 31.5 40 0.001 14.9 5.5 51 15-65 30-86 (240)
306 pfam02222 ATP-grasp ATP-grasp 31.3 14 0.00036 17.9 0.1 15 116-130 21-35 (171)
307 TIGR02865 spore_II_E stage II 31.3 40 0.001 14.9 4.2 137 109-260 629-785 (794)
308 TIGR02149 glgA_Coryne glycogen 30.9 26 0.00067 16.1 1.4 20 49-68 6-25 (416)
309 PRK07709 fructose-bisphosphate 30.5 42 0.0011 14.8 5.8 59 138-196 192-252 (285)
310 TIGR00676 fadh2 5,10-methylene 30.3 42 0.0011 14.7 3.2 111 5-124 76-213 (302)
311 PRK13114 consensus 30.3 42 0.0011 14.7 10.3 25 154-178 149-177 (266)
312 pfam00390 malic Malic enzyme, 30.2 42 0.0011 14.7 2.6 38 107-144 142-181 (182)
313 pfam02219 MTHFR Methylenetetra 30.1 42 0.0011 14.7 7.0 21 19-39 87-107 (286)
314 pfam00977 His_biosynth Histidi 30.0 42 0.0011 14.7 5.4 51 14-64 27-83 (229)
315 TIGR00963 secA preprotein tran 30.0 16 0.00042 17.5 0.2 18 241-258 357-374 (904)
316 TIGR03121 one_C_dehyd_A formyl 30.0 43 0.0011 14.7 3.7 52 109-160 212-278 (556)
317 pfam02007 MtrH Tetrahydrometha 29.8 43 0.0011 14.7 6.4 142 27-170 62-238 (296)
318 pfam00290 Trp_syntA Tryptophan 29.8 43 0.0011 14.7 9.8 25 154-178 145-173 (258)
319 PRK13753 dihydropteroate synth 29.8 43 0.0011 14.7 6.6 16 116-131 112-128 (279)
320 smart00732 YqgFc Likely ribonu 29.6 43 0.0011 14.7 4.0 57 71-130 35-91 (99)
321 COG0623 FabI Enoyl-[acyl-carri 29.6 43 0.0011 14.7 3.9 55 113-169 46-106 (259)
322 pfam03141 DUF248 Putative meth 29.2 29 0.00075 15.8 1.4 70 109-182 148-223 (506)
323 PRK13111 trpA tryptophan synth 29.2 44 0.0011 14.6 10.1 23 156-178 146-172 (256)
324 TIGR01326 OAH_OAS_sulfhy O-ace 29.2 44 0.0011 14.6 4.6 134 25-182 68-222 (434)
325 PRK13117 consensus 29.1 44 0.0011 14.6 9.7 105 112-228 111-224 (268)
326 TIGR02033 D-hydantoinase dihyd 29.1 44 0.0011 14.6 6.2 167 87-258 201-391 (466)
327 PRK06321 replicative DNA helic 28.7 45 0.0011 14.6 4.9 129 108-244 238-387 (472)
328 COG3394 Uncharacterized protei 28.6 45 0.0011 14.5 9.2 52 15-69 15-66 (257)
329 TIGR02701 shell_carb_anhy carb 28.3 14 0.00036 17.9 -0.3 75 151-234 341-437 (463)
330 pfam03102 NeuB NeuB family. Ne 27.9 46 0.0012 14.5 3.4 61 116-178 106-179 (240)
331 TIGR00294 TIGR00294 conserved 27.9 46 0.0012 14.5 2.3 83 152-241 92-183 (323)
332 cd03328 MR_like_3 Mandelate ra 27.7 46 0.0012 14.5 5.9 21 110-130 273-293 (352)
333 COG1492 CobQ Cobyric acid synt 27.6 17 0.00043 17.4 -0.0 64 117-180 151-227 (486)
334 pfam11220 DUF3015 Protein of u 27.5 47 0.0012 14.4 3.5 32 226-257 84-118 (144)
335 TIGR00014 arsC arsenate reduct 27.3 47 0.0012 14.4 2.4 37 92-133 65-101 (114)
336 TIGR03099 dCO2ase_PEP1 pyridox 27.1 48 0.0012 14.4 5.8 42 22-66 108-149 (398)
337 KOG3484 consensus 27.0 18 0.00046 17.2 0.0 21 189-209 26-46 (91)
338 PRK05595 replicative DNA helic 26.6 49 0.0012 14.3 5.3 130 108-245 213-360 (444)
339 TIGR03573 WbuX N-acetyl sugar 26.6 49 0.0012 14.3 8.4 106 16-133 43-170 (343)
340 cd01319 AMPD AMP deaminase (AM 26.4 49 0.0012 14.3 2.9 63 3-67 61-127 (496)
341 cd01533 4RHOD_Repeat_2 Member 26.3 49 0.0012 14.3 2.1 22 151-172 68-91 (109)
342 cd01137 PsaA Metal binding pro 26.2 49 0.0013 14.3 7.3 11 33-43 70-80 (287)
343 COG1242 Predicted Fe-S oxidore 26.1 49 0.0013 14.3 7.4 154 43-208 102-271 (312)
344 COG1590 Uncharacterized conser 26.1 50 0.0013 14.3 5.9 96 123-231 65-170 (208)
345 COG1751 Uncharacterized conser 25.9 50 0.0013 14.2 5.4 68 15-82 13-82 (186)
346 pfam03652 UPF0081 Uncharacteri 25.9 50 0.0013 14.2 5.7 70 71-143 35-107 (134)
347 KOG1717 consensus 25.3 45 0.0011 14.5 1.8 28 134-162 237-264 (343)
348 PRK05301 pyrroloquinoline quin 25.3 51 0.0013 14.2 4.6 116 16-141 50-176 (375)
349 TIGR00856 pyrC_dimer dihydroor 25.3 51 0.0013 14.2 3.8 232 3-255 8-317 (364)
350 PRK03620 5-dehydro-4-deoxygluc 24.9 52 0.0013 14.1 10.9 140 17-170 23-173 (296)
351 TIGR02495 NrdG2 anaerobic ribo 24.6 53 0.0013 14.1 3.5 39 26-64 60-99 (220)
352 PRK08883 ribulose-phosphate 3- 24.5 53 0.0013 14.1 4.4 11 159-169 117-127 (220)
353 KOG2368 consensus 24.5 37 0.00095 15.1 1.3 81 104-204 128-220 (316)
354 PRK13133 consensus 24.5 53 0.0014 14.1 10.0 13 158-170 159-171 (267)
355 PRK13119 consensus 24.4 53 0.0014 14.1 10.2 15 156-170 153-167 (261)
356 PRK10859 putative transglycosy 24.3 53 0.0014 14.0 5.2 15 21-35 35-49 (507)
357 COG1533 SplB DNA repair photol 24.3 53 0.0014 14.0 7.0 117 73-193 66-206 (297)
358 cd06839 PLPDE_III_Btrk_like Ty 24.2 54 0.0014 14.0 4.7 31 21-53 89-119 (382)
359 pfam07745 Glyco_hydro_53 Glyco 24.2 54 0.0014 14.0 11.1 24 186-209 219-242 (332)
360 KOG2792 consensus 24.0 40 0.001 14.9 1.3 68 108-178 158-230 (280)
361 cd04729 NanE N-acetylmannosami 24.0 54 0.0014 14.0 2.6 45 138-182 166-211 (219)
362 pfam00834 Ribul_P_3_epim Ribul 23.9 54 0.0014 14.0 4.2 99 120-235 54-157 (201)
363 TIGR02250 FCP1_euk FCP1-like p 23.6 34 0.00087 15.3 0.9 25 152-176 85-114 (170)
364 TIGR00734 hisAF_rel hisA/hisF 23.5 55 0.0014 14.0 3.4 151 15-173 35-217 (230)
365 TIGR01520 FruBisAldo_II_A fruc 23.2 33 0.00085 15.4 0.8 23 149-171 265-288 (365)
366 pfam05706 CDKN3 Cyclin-depende 23.2 51 0.0013 14.2 1.7 10 150-159 134-143 (207)
367 TIGR01420 pilT_fam twitching m 23.1 56 0.0014 13.9 2.8 61 70-143 184-247 (350)
368 cd04724 Tryptophan_synthase_al 23.0 57 0.0014 13.9 10.0 26 153-178 134-163 (242)
369 TIGR02712 urea_carbox urea car 22.8 48 0.0012 14.4 1.5 165 38-235 57-264 (1226)
370 PRK04148 hypothetical protein; 22.8 24 0.00062 16.3 0.0 25 110-134 89-113 (135)
371 cd06840 PLPDE_III_Bif_AspK_Dap 22.7 57 0.0015 13.8 4.8 12 114-125 160-171 (368)
372 KOG2707 consensus 22.6 57 0.0015 13.8 2.7 78 61-142 71-154 (405)
373 PRK08506 replicative DNA helic 22.6 58 0.0015 13.8 4.7 129 108-244 205-351 (473)
374 COG4826 Serine protease inhibi 22.5 50 0.0013 14.3 1.6 10 187-196 283-292 (410)
375 cd06368 PBP1_iGluR_non_NMDA_li 22.5 58 0.0015 13.8 3.2 55 112-169 143-198 (324)
376 PRK06019 phosphoribosylaminoim 22.5 58 0.0015 13.8 3.5 48 160-209 176-225 (377)
377 pfam01261 AP_endonuc_2 Xylose 22.4 58 0.0015 13.8 7.6 22 109-130 102-123 (201)
378 COG1154 Dxs Deoxyxylulose-5-ph 22.4 58 0.0015 13.8 2.6 22 109-130 451-473 (627)
379 PRK00109 Holliday junction res 22.2 58 0.0015 13.8 5.5 69 72-143 39-110 (141)
380 TIGR00315 cdhB CO dehydrogenas 22.2 59 0.0015 13.8 2.5 57 61-128 5-62 (170)
381 pfam07700 HNOB Heme NO binding 22.1 59 0.0015 13.8 5.5 12 116-127 53-64 (171)
382 pfam00549 Ligase_CoA CoA-ligas 22.1 59 0.0015 13.8 3.5 69 62-136 19-96 (128)
383 pfam01799 Fer2_2 [2Fe-2S] bind 22.0 59 0.0015 13.8 2.1 37 217-253 27-63 (75)
384 PRK08694 consensus 21.9 59 0.0015 13.7 4.3 129 108-244 230-378 (468)
385 TIGR00421 ubiX_pad polyprenyl 21.8 39 0.00098 15.0 0.9 83 153-241 81-177 (181)
386 TIGR01264 tyr_amTase_E tyrosin 21.8 60 0.0015 13.7 4.2 133 33-177 107-269 (415)
387 PRK07106 5-aminoimidazole-4-ca 21.7 60 0.0015 13.7 3.3 18 38-55 39-56 (391)
388 pfam08569 Mo25 Mo25-like. Mo25 21.6 59 0.0015 13.8 1.8 75 185-261 143-217 (334)
389 COG0648 Nfo Endonuclease IV [D 21.3 61 0.0016 13.7 5.3 136 60-205 103-259 (280)
390 PTZ00066 pyruvate kinase; Prov 21.2 61 0.0016 13.6 9.2 103 15-130 209-315 (513)
391 COG4623 Predicted soluble lyti 21.2 61 0.0016 13.6 3.5 31 111-141 139-169 (473)
392 smart00518 AP2Ec AP endonuclea 21.0 62 0.0016 13.6 5.9 46 6-54 3-58 (273)
393 PRK13127 consensus 21.0 62 0.0016 13.6 10.3 104 112-227 104-216 (262)
394 pfam03266 DUF265 Protein of un 21.0 62 0.0016 13.6 3.9 59 76-143 86-146 (168)
395 COG0352 ThiE Thiamine monophos 20.9 62 0.0016 13.6 4.9 78 99-179 40-133 (211)
396 cd00308 enolase_like Enolase-s 20.9 62 0.0016 13.6 6.9 26 117-142 139-165 (229)
397 cd06387 PBP1_iGluR_AMPA_GluR3 20.8 62 0.0016 13.6 3.4 56 111-169 139-197 (372)
398 COG0159 TrpA Tryptophan syntha 20.7 63 0.0016 13.6 9.9 28 152-179 151-182 (265)
399 cd00946 FBP_aldolase_IIA Class 20.7 63 0.0016 13.6 4.6 46 149-194 245-292 (345)
400 TIGR02080 O_succ_thio_ly O-suc 20.6 63 0.0016 13.6 4.1 48 155-206 98-147 (383)
401 cd00951 KDGDH 5-dehydro-4-deox 20.5 63 0.0016 13.6 11.3 105 17-132 22-134 (289)
402 PRK11823 DNA repair protein Ra 20.5 55 0.0014 14.0 1.5 54 107-169 191-250 (454)
403 PRK08760 replicative DNA helic 20.5 63 0.0016 13.5 3.8 130 108-245 241-388 (476)
404 PRK09722 allulose-6-phosphate 20.4 63 0.0016 13.5 4.2 81 125-206 83-174 (227)
405 COG2602 Beta-lactamase class D 20.1 65 0.0016 13.5 3.2 71 92-177 140-214 (254)
406 PRK13139 consensus 20.0 65 0.0017 13.5 10.1 23 156-178 153-179 (254)
407 pfam06555 consensus 20.0 65 0.0017 13.5 3.2 26 72-97 20-51 (200)
No 1
>TIGR00010 TIGR00010 hydrolase, TatD family; InterPro: IPR015991 Escherichia coli TatD (synonym MttC) has been shown experimentally to be a DNase . On the basis of operon structure, it was originally thought to be involved in the Sec-independent export of protein precursors bearing twin arginine signal peptides by the Tat system . This alternative membrane targeting and translocation system (Mtt), also called twin arginine translocase (Tat) (MttA1A2BC or TatABCD), has been shown to transport fully folded proteins to, or across, the membrane , . However, it was later determined that TatD is not required for this translocation process , . Furthermore, it was noted that no exact correlation exists between the ability of an organism to synthesise a TatD-like protein and whether that organism has a Tat protein transport pathway . Also, with the exception of Escherichia coli , the genetic linkage between TatD and other Tat genes (operon structure) is not maintained. Members of this group may be distantly related to a large 3D fold-based domain superfamily of metalloenzymes . The description of this fold superfamily was based on an analysis of conservation patterns in three dimensions, and the discovery that the same active-site architecture occurs in a large set of enzymes involved primarily in nucleotide metabolism. The group is thought to include urease, dihydroorotase, allantoinase, hydantoinase, AMP-, adenine- and cytosine- deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolase, formylmethanofuran dehydrogenase, and other enzymes ..
Probab=100.00 E-value=0 Score=584.92 Aligned_cols=254 Identities=42% Similarity=0.723 Sum_probs=245.1
Q ss_pred EEEEECCCCCHHHHC---CHHHHHHHHHHCCCCEEEEECCCHHHHH-HHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHH
Q ss_conf 168613888756522---6899999999869989999167987789-99999985572-332112445443344678899
Q gi|254780215|r 2 LIDTHCHLLLPDFDE---DRHDVIMRAHQANVLKMIAIAIKVKDFV-PLIKLCQDYPS-SIFCSVGTHPCHAHEENEVLV 76 (262)
Q Consensus 2 ~iD~H~HL~~~~~~~---d~~~~i~~a~~~gv~~~i~~~~~~~~~~-~~~~l~~~~p~-~i~~a~GiHP~~~~~~~~~~~ 76 (262)
+|||||||+...+.+ |++++++||+..||..++.+|+++.++. ++.+++++||+ +||+|+|+||+.+.+..+.+.
T Consensus 1 ~~D~HcHL~~~~~~~~~~d~~~v~~ra~~~~v~~~v~vg~~l~~~~W~~~~l~~~~~g~~v~~~~G~HP~d~~~~~~~~~ 80 (269)
T TIGR00010 1 LIDAHCHLDLLDFEELHVDVEEVIERAKAEGVTAVVDVGTDLEDLNWRALELAEKYPGDNVYAAVGVHPLDVEDDTKEDI 80 (269)
T ss_pred CCCCEECCCCCCCCHHCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 91100135622221220358999999997499299973467002069999999847997699982268722204208999
Q ss_pred HHHHHHC--CCCCCCEECCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHH--HHCCCC
Q ss_conf 8853100--1333210044677553322111--024678999987664204420330002333579998531--000367
Q gi|254780215|r 77 DELVCLA--SHPRVVAIGETGLDRYHNAHTI--EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEE--MKKGPF 150 (262)
Q Consensus 77 ~~l~~l~--~~~~~~aIGEiGLD~~~~~~~~--e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~--~~~~~~ 150 (262)
+++.+++ ..++|+||||+|||||+..+.. +.|+++|++||+||.+++|||+||+|+|++++++||+++ .+....
T Consensus 81 ~~l~~l~~~~~~~v~AiGE~GLDY~~~~~~~e~~~Q~e~F~~q~~lA~~~~~P~iiH~RdA~~d~~~iL~~~y~~~~~~~ 160 (269)
T TIGR00010 81 KELEKLAKNAHPKVVAIGETGLDYYKADEKKERRRQKEVFRAQLQLAEELNLPVIIHARDAEEDVLDILREYYAEKAPKV 160 (269)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999998506954798510440430687521789999999999999971996899788457999999999984278778
Q ss_pred CCCCEECCCCHHHHHHHHCCC---CEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 533112146402344321035---20202332211333223333210566717983078667877768875882449999
Q gi|254780215|r 151 PFVIHCFSSSQKLADICLELG---GYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNT 227 (262)
Q Consensus 151 ~~i~H~FsG~~~~~~~~l~~g---~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~ 227 (262)
++|||||||+.+++++++++| |||||||.|||++++.+|++|+.+|+||||+|||||||+|.|+||++|+|.++..|
T Consensus 161 ~g~~HCftg~~E~a~~~ld~gd~~~yiSisG~vTFknA~~l~~~v~~iP~e~LL~ETDSPyLaP~P~RGK~N~P~~v~~v 240 (269)
T TIGR00010 161 GGVLHCFTGDAELAKKLLDLGDLLFYISISGIVTFKNAKSLREVVKKIPLERLLVETDSPYLAPVPYRGKRNEPAFVRYV 240 (269)
T ss_pred CEEEEECCCCHHHHHHHHCCCCEEEEEECCCCEEEECCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 75798148888999999606987999972860221062678999974596432320167445788988985674059999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999987289989999999999999842
Q gi|254780215|r 228 AKALAKEKDVSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 228 ~~~iA~i~~~~~eei~~~~~~N~~~~f~ 255 (262)
++.||+||+++++||+++|++|++++|+
T Consensus 241 ~~~iAeik~~~~ee~~~~~t~N~~~lF~ 268 (269)
T TIGR00010 241 VEAIAEIKGIDLEELAQITTKNAKRLFK 268 (269)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999988388999999999999999845
No 2
>PRK10812 putative metallodependent hydrolase; Provisional
Probab=100.00 E-value=0 Score=549.49 Aligned_cols=257 Identities=39% Similarity=0.606 Sum_probs=238.3
Q ss_pred CEEEEECCCCCHH---HHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9168613888756---5226899999999869989999167987789999999855723321124454433446788998
Q gi|254780215|r 1 MLIDTHCHLLLPD---FDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVD 77 (262)
Q Consensus 1 M~iD~H~HL~~~~---~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~ 77 (262)
|||||||||+... +.+|+++++++|.++||.+++++|+++++|.++++++++|| .+++++|+||+++.+.. .++
T Consensus 2 ~liDtHcHLd~~~~~~~~~d~~~vl~~a~~~gV~~~i~~g~~~~~~~~~~~l~~~~~-~i~~a~GiHP~~~~~~~--~~~ 78 (265)
T PRK10812 2 FLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTLPGYLHMRDLVGERD-NVVFSCGVHPLNQDEPY--DVE 78 (265)
T ss_pred EEEEECCCCCCCCCCCHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCHH--HHH
T ss_conf 589953589832154101399999999998699889995399899999999985399-81799504857668631--099
Q ss_pred HHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEEC
Q ss_conf 85310013332100446775533221110246789999876642044203300023335799985310003675331121
Q gi|254780215|r 78 ELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCF 157 (262)
Q Consensus 78 ~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~F 157 (262)
.++.++.+++++|||||||||+++.++++.|+++|++||+||++++|||+||||+|+++++++|+++.. ...++|+|||
T Consensus 79 ~l~~l~~~~~vvAIGEiGLDy~~~~~~~~~Q~~~F~~ql~lA~~~~lPviiH~R~A~~d~~~iLk~~~~-~~~~gv~HcF 157 (265)
T PRK10812 79 DLRRLAAEEGVVAMGETGLDYFYTPETKVRQQASFIHHIQIGRELNKPVIVHTRDARADTLAILREEKV-TDCGGVLHCF 157 (265)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCC-CCCCEEEECC
T ss_conf 999985189938985057999999987999999999999999974798699855434899999998247-7767277607
Q ss_pred CCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 46402344321035202023322113332233332105667179830786678777688758824499999999987289
Q gi|254780215|r 158 SSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDV 237 (262)
Q Consensus 158 sG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~ 237 (262)
||+.+++++++++||||||||.+||++++++|++++.+|+||||+|||||||+|.|+||++|+|++|+.|++++|++|++
T Consensus 158 sGs~e~a~~~l~lG~yis~~g~it~~~a~~lr~~~~~iPldrlLlETDsPyl~P~p~rg~~NeP~~i~~v~~~iA~i~~~ 237 (265)
T PRK10812 158 TEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGV 237 (265)
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 89999999999649966356523310569999999859935579714788778777799989779999999999987598
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9899999999999998425687509
Q gi|254780215|r 238 SYEDLMEETTKNALKLFSKISECVV 262 (262)
Q Consensus 238 ~~eei~~~~~~N~~~~f~~~~~~~~ 262 (262)
+++++++++++|++++|+ ++.+.|
T Consensus 238 ~~eev~~~t~~Na~~lF~-l~~~~~ 261 (265)
T PRK10812 238 AVEELAQVTTDNFARLFH-IDASRL 261 (265)
T ss_pred CHHHHHHHHHHHHHHHHC-CCHHHC
T ss_conf 999999999999999949-986645
No 3
>PRK10425 DNase TatD; Provisional
Probab=100.00 E-value=0 Score=548.30 Aligned_cols=252 Identities=31% Similarity=0.489 Sum_probs=239.9
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 16861388875652268999999998699899991679877899999998557233211244544334467889988531
Q gi|254780215|r 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVC 81 (262)
Q Consensus 2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~ 81 (262)
|||+||||++..|++|++++++||+++||.+++++|+++++|.++++++++||+ +|+++|+|||++.++.+...+.+..
T Consensus 1 liDtH~HL~~~~f~~d~~~vl~rA~~~gV~~ii~~g~~~~~~~~~~~la~~~~~-v~~~~GiHP~~~~~~~~~~~~~l~~ 79 (258)
T PRK10425 1 MFDIGVNLTSSQFAKDRDDVVARAFAAGVNGLLITGTNLRESQQAQKLARQYPS-CWSTAGVHPHDSSQWQAATEEAIIE 79 (258)
T ss_pred CEEEEECCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHCCHHHHHHHHH
T ss_conf 977775889877757899999999987999899946999999999999986887-3598335812332368578999999
Q ss_pred HCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCH
Q ss_conf 00133321004467755332211102467899998766420442033000233357999853100036753311214640
Q gi|254780215|r 82 LASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQ 161 (262)
Q Consensus 82 l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~ 161 (262)
++.+++++|||||||||+++.++.+.|+++|++||+||++++|||+||||+|+++++++|+++.... .++|+|||||+.
T Consensus 80 ~~~~~~~vAIGEiGLDy~~~~~~~~~Q~~~F~~ql~lA~~~~lPviiH~R~A~~~~l~iL~~~~~~~-~~~v~HcFsGs~ 158 (258)
T PRK10425 80 LAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAAELNMPVFMHCRDAHERFLTLLEPWLDKL-PGAVLHCFTGTR 158 (258)
T ss_pred HHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCC-CCCEEEECCCCH
T ss_conf 8548982799612216775689999999999999999999799879996441589999999971668-673343068999
Q ss_pred HHHHHHHCCCCEEECCCCCC-HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHHC
Q ss_conf 23443210352020233221-133322333321056671798307866787776887----5882449999999998728
Q gi|254780215|r 162 KLADICLELGGYISFTGMIT-FPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGK----RNEPAYVVNTAKALAKEKD 236 (262)
Q Consensus 162 ~~~~~~l~~g~y~S~~g~i~-~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~----~n~P~~i~~~~~~iA~i~~ 236 (262)
+++++++++||||||||.+| ++++.++|++++.+|+||||+|||||||+|.|+||+ +|+|++++.|++++|++||
T Consensus 159 e~a~~~l~~G~yis~~G~i~~~~~~~~lr~~v~~iPldrlLlETDsPyl~P~~~~~k~~~~rNeP~~v~~v~~~iA~l~~ 238 (258)
T PRK10425 159 EEMQACVARGLYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWRG 238 (258)
T ss_pred HHHHHHHHCCCEEEECCCEECCCCCHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999997492898636120364306899999849987979835588888867789989998770689999999997759
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 9989999999999999842
Q gi|254780215|r 237 VSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 237 ~~~eei~~~~~~N~~~~f~ 255 (262)
+++++++++|++|+++|||
T Consensus 239 ~~~eela~~t~~Na~~lF~ 257 (258)
T PRK10425 239 EDAAWLAATTDANARTLFG 257 (258)
T ss_pred CCHHHHHHHHHHHHHHHHC
T ss_conf 6999999999999999849
No 4
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=100.00 E-value=0 Score=540.65 Aligned_cols=251 Identities=45% Similarity=0.737 Sum_probs=242.7
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 16861388875652268999999998699899991679877899999998557233211244544334467889988531
Q gi|254780215|r 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVC 81 (262)
Q Consensus 2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~ 81 (262)
|||+||||++..|..|+++++++|.++||.+++++|+++.+|.++++++++|| .+++|+|+|||++.+..+..++.+..
T Consensus 1 lIDsHcHL~~~~~~~d~~~vi~~a~~~gv~~ii~~~~~~~~~~~~~~la~~~~-~i~~~~GiHP~~~~~~~~~~~~~l~~ 79 (251)
T cd01310 1 LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTDLKSSKRALELAKKYD-NVYAAVGLHPHDADEHVDEDLDLLEL 79 (251)
T ss_pred CEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCC-CEEEEECCCHHHHHHCCHHHHHHHHH
T ss_conf 97850488981444699999999998699889996899999999999997599-86898236837651235779999999
Q ss_pred HCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCH
Q ss_conf 00133321004467755332211102467899998766420442033000233357999853100036753311214640
Q gi|254780215|r 82 LASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQ 161 (262)
Q Consensus 82 l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~ 161 (262)
++.+++++|||||||||++..++++.|+++|++||+||++++|||+||||+|+++++++|+++. ...++|+|||||+.
T Consensus 80 ~~~~~~~vaIGEiGLD~~~~~~~~~~Q~~~F~~ql~lA~~~~lPv~iH~R~A~~~~l~iL~~~~--~~~~~v~H~fsG~~ 157 (251)
T cd01310 80 LAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDAHEDVLEILKEYG--PPKRGVFHCFSGSA 157 (251)
T ss_pred HHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC--CCCCEEEEECCCCH
T ss_conf 9728990699850148888899899999999999999987578848986454799999999708--88773888568999
Q ss_pred HHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 23443210352020233221133322333321056671798307866787776887588244999999999872899899
Q gi|254780215|r 162 KLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYED 241 (262)
Q Consensus 162 ~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~ee 241 (262)
+++++++++||||||||.+||++++++|++++.+|+||||+|||||||+|.|+||++|+|++|+.|++.+|++|++++++
T Consensus 158 ~~a~~~l~~G~yisi~g~it~~~~~~~~~~~~~iPldrlllETDsP~l~p~~~~g~~NeP~~i~~v~~~lA~i~~~~~~e 237 (251)
T cd01310 158 EEAKELLDLGFYISISGIVTFKNANELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIAELKGISVEE 237 (251)
T ss_pred HHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99998611890895374111424899999998599522898258977786677999997289999999999884989999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999842
Q gi|254780215|r 242 LMEETTKNALKLFS 255 (262)
Q Consensus 242 i~~~~~~N~~~~f~ 255 (262)
+++++++|+++|||
T Consensus 238 l~~~~~~N~~~lFG 251 (251)
T cd01310 238 VAEVTTENAKRLFG 251 (251)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998659
No 5
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=100.00 E-value=0 Score=539.03 Aligned_cols=251 Identities=29% Similarity=0.500 Sum_probs=237.7
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 16861388875652268999999998699899991679877899999998557233211244544334467889988531
Q gi|254780215|r 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVC 81 (262)
Q Consensus 2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~ 81 (262)
|||+||||++..|+.|+++++++|+++||.+++++|+++++|.++++++++||+ +++|+|+|||++.+..+...+.+..
T Consensus 5 ~iDtH~HL~~~~~~~d~~~vi~~a~~~gv~~i~~~g~~~~~~~~~~~l~~~~~~-i~~~vGiHP~~~~~~~~~~~~~l~~ 83 (258)
T PRK11449 5 FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAANFARVLALAERYQP-LYAALGLHPGMLEKHSDVSLDQLQQ 83 (258)
T ss_pred EEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC-CEEECCCCCCHHHCCCCCCHHHHHH
T ss_conf 798611799815476999999999982999999934999999999999875963-0187058976111057005999999
Q ss_pred HCC-C-CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCC
Q ss_conf 001-3-33210044677553322111024678999987664204420330002333579998531000367533112146
Q gi|254780215|r 82 LAS-H-PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSS 159 (262)
Q Consensus 82 l~~-~-~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG 159 (262)
++. + ++++||||||||||++.++.+.|+++|++||+||.+++|||+||||+|+++++++|+++ ..+.++|+|||||
T Consensus 84 ~l~~~~~~vvaIGEiGLDy~~~~~~~~~Q~~~F~~ql~lA~~~~lPvviH~R~A~~~~~~~l~~~--~~~~~gi~H~FsG 161 (258)
T PRK11449 84 ALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRH--DLPRTGVVHGFSG 161 (258)
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHC--CCCCCCEEEECCC
T ss_conf 99818787899834564778899869999999999999999849975986221379999999855--8885754762789
Q ss_pred CHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 40234432103520202332211333223333210566717983078667877768875882449999999998728998
Q gi|254780215|r 160 SQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSY 239 (262)
Q Consensus 160 ~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~ 239 (262)
+.+++++++++||||||||++||++++++|++++.+|+||||+|||||||+|.|+||++|+|.+++.|+++||++|++++
T Consensus 162 ~~~~a~~~l~~G~yiS~~g~it~~~~~~~~~~v~~iPldrll~ETDsPyl~p~~~rg~~NeP~~i~~v~~~iA~ik~~~~ 241 (258)
T PRK11449 162 SLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDVLCELRPEPA 241 (258)
T ss_pred CHHHHHHHHHCCCEEEECEEEECCCCHHHHHHHHHCCCHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 99999999976982876548634677999999995991568993369999899999998861899999999998869799
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999842
Q gi|254780215|r 240 EDLMEETTKNALKLFS 255 (262)
Q Consensus 240 eei~~~~~~N~~~~f~ 255 (262)
+++++++++|++||||
T Consensus 242 eev~~~~~~N~~~lF~ 257 (258)
T PRK11449 242 DEIAEVLLNNTYTLFR 257 (258)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999999859
No 6
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=536.47 Aligned_cols=253 Identities=47% Similarity=0.782 Sum_probs=241.3
Q ss_pred CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 91686138887565226899999999869989999167987789999999855723321124454433446788998853
Q gi|254780215|r 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELV 80 (262)
Q Consensus 1 M~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~ 80 (262)
||||+||||++..|..|+++++++|.++||..++.+|++.+++..+++++++|| ++|+++|+||++..+..+..++.|.
T Consensus 2 ~liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~-~v~~~~G~HP~~~~~~~~~~~~~l~ 80 (256)
T COG0084 2 MLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYP-NVYAAVGVHPLDADEHSEEDLEELE 80 (256)
T ss_pred CCEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 627850578803326899999999998599379996158888899999998689-8689986688733336788999999
Q ss_pred HHCCC-CCCCEECCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECC
Q ss_conf 10013-332100446775533221-1102467899998766420442033000233357999853100036753311214
Q gi|254780215|r 81 CLASH-PRVVAIGETGLDRYHNAH-TIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFS 158 (262)
Q Consensus 81 ~l~~~-~~~~aIGEiGLD~~~~~~-~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~Fs 158 (262)
.++.. ++++|||||||||++... +++.|+++|++||+||++++|||+||+|+|+++++++|+++.. +.++|+||||
T Consensus 81 ~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~--~~~gi~HcFs 158 (256)
T COG0084 81 QLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGA--PVGGVLHCFS 158 (256)
T ss_pred HHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCC--CCCEEEECCC
T ss_conf 98721898589983346856566644789999999999999973997799867427999999986487--8888998378
Q ss_pred CCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 64023443210352020233221133322333321056671798307866787776887588244999999999872899
Q gi|254780215|r 159 SSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVS 238 (262)
Q Consensus 159 G~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~ 238 (262)
|+.+++++++++||||||||++||++++++|++++.+|+||||+|||||||+|.|+||++|+|.++..|++++|++||++
T Consensus 159 Gs~e~a~~~~d~G~yisisG~itfk~a~~~~ev~~~iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~~v~~~iAelk~~~ 238 (256)
T COG0084 159 GSAEEARKLLDLGFYISISGIVTFKNAEKLREVARELPLDRLLLETDAPYLAPVPYRGKRNEPAYVRHVAEKLAELKGIS 238 (256)
T ss_pred CCHHHHHHHHHCCEEEEECCEEECCCCHHHHHHHHHCCHHHEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 97999999997692899786664178588999999599767686457988888777999999647999999999875979
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999998425
Q gi|254780215|r 239 YEDLMEETTKNALKLFSK 256 (262)
Q Consensus 239 ~eei~~~~~~N~~~~f~~ 256 (262)
.+++++++++|++++|+.
T Consensus 239 ~eeva~~t~~N~~~lf~~ 256 (256)
T COG0084 239 AEEVAEITTENAKRLFGL 256 (256)
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999999999998568
No 7
>pfam01026 TatD_DNase TatD related DNase. This family of proteins are related to a large superfamily of metalloenzymes. TatD, a member of this family has been shown experimentally to be a DNase enzyme.
Probab=100.00 E-value=0 Score=524.97 Aligned_cols=252 Identities=44% Similarity=0.757 Sum_probs=239.7
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 68613888756522689999999986998999916798778999999985572332112445443344678899885310
Q gi|254780215|r 3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCL 82 (262)
Q Consensus 3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l 82 (262)
||+||||+...|..|+++++++|.++||.+++++|+++.+|.++++++++||+.|++++|+|||++.+..+.+.+.+..+
T Consensus 1 iD~H~HL~~~~~~~d~~~vl~~a~~~gv~~ii~~~~~~~~~~~~~~la~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~ 80 (255)
T pfam01026 1 IDAHCHLDFKKFDGDRDEVIERAREAGVTAVVVVGTDLKDFERALELARKYPGKVYAAVGVHPHEADEASEEVLEALEKL 80 (255)
T ss_pred CEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCHHHHHHHHHH
T ss_conf 94313789814356999999999987999899956999999999999976876678995358101151688999999999
Q ss_pred --CCCCCCCEECCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCC
Q ss_conf --013332100446775533-22111024678999987664204420330002333579998531000367533112146
Q gi|254780215|r 83 --ASHPRVVAIGETGLDRYH-NAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSS 159 (262)
Q Consensus 83 --~~~~~~~aIGEiGLD~~~-~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG 159 (262)
...++++|||||||||++ +.++++.|+++|++||+||+++++||+||||+|+++++++|+++... ..++|+|||||
T Consensus 81 ~~~~~~~~vaIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~~~~lPvilH~r~a~~~~~~il~~~~~~-~~~~v~H~fsG 159 (255)
T pfam01026 81 KLAEHPKVVAIGEIGLDYYYVDESPKEAQEEVFRRQLELAKELDLPVVIHTRDAEEDLLEILKEAGAP-GLRVVLHCFTG 159 (255)
T ss_pred HHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCC-CCCEEEEECCC
T ss_conf 74358987999801357765799989999999999999998708974898455399999999982677-88557776789
Q ss_pred CHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 40234432103520202332211333223333210566717983078667877768875882449999999998728998
Q gi|254780215|r 160 SQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSY 239 (262)
Q Consensus 160 ~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~ 239 (262)
+.+++++++++||||||||.+||+++++++++++.+|+||||+||||||++|.|+||++|+|++++.|++++|++++++.
T Consensus 160 ~~~~~~~~~~~g~~~s~~g~i~~~~~~~~~~~~~~iPl~rlllETD~P~l~p~~~rg~~NeP~~v~~v~~~iA~~~~~~~ 239 (255)
T pfam01026 160 SLETAKEILDLGFYISISGIVTFKNAEELREVVAEIPLDRLLVETDAPYLAPVPYRGKRNEPAYVPHVAEKLAELKGISE 239 (255)
T ss_pred CHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 99999999968956986013146047999999974996259983589877877789998887999999999998859899
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999842
Q gi|254780215|r 240 EDLMEETTKNALKLFS 255 (262)
Q Consensus 240 eei~~~~~~N~~~~f~ 255 (262)
+++++++++|+++|||
T Consensus 240 e~v~~~~~~N~~~lFG 255 (255)
T pfam01026 240 EEVAKITTENAKRLFG 255 (255)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999998649
No 8
>KOG3020 consensus
Probab=100.00 E-value=0 Score=413.77 Aligned_cols=253 Identities=37% Similarity=0.576 Sum_probs=236.4
Q ss_pred CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH-----H
Q ss_conf 91686138887565226899999999869989999167987789999999855723321124454433446788-----9
Q gi|254780215|r 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEV-----L 75 (262)
Q Consensus 1 M~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~-----~ 75 (262)
|+.|.|||+.......+.+.++.+|...|+..++.+|++..++..+++++++||+.+++++|+|||++.++.+. .
T Consensus 17 ~~~~~~~~~~~~~~~~d~s~v~~~a~~~~v~~~~v~gt~~~d~~~~~~l~~~y~~~v~~t~G~HP~~~~~~~~~~~~~~~ 96 (296)
T KOG3020 17 MLEDIYCHIQAHPSDSDASQVLERAVQAGVSKLIVTGTSLKDSKEALELAEKYPGSVYPTFGVHPHFSQEFSDQSRKEKF 96 (296)
T ss_pred HHCHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHCCCHHHH
T ss_conf 22103212346887765037888887536337887178822079999998518985564467577743013103321547
Q ss_pred HHHHHHHCCC---CCCCEECCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9885310013---3321004467755332-21110246789999876642044203300023335799985310003675
Q gi|254780215|r 76 VDELVCLASH---PRVVAIGETGLDRYHN-AHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFP 151 (262)
Q Consensus 76 ~~~l~~l~~~---~~~~aIGEiGLD~~~~-~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~ 151 (262)
++.|..++++ ++++|||||||||.|. ..+.+.|+.+|++|++||.+++||++||||.|++++++||++.......+
T Consensus 97 ~~~L~~~~~~~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~a~~d~~eIl~~~~~~~~~~ 176 (296)
T KOG3020 97 LDTLLSIIENGFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRSAHEDLLEILKRFLPECHKK 176 (296)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999888505668757750444455510169767899999999999987069804424655588999999843236775
Q ss_pred CCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-----------------
Q ss_conf 331121464023443210352020233221133322333321056671798307866787776-----------------
Q gi|254780215|r 152 FVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSC----------------- 214 (262)
Q Consensus 152 ~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~----------------- 214 (262)
+++|||+|+.+.++++++.|+||||+|.+++.+ +..+++|.+|+||||+||||||+.|.+.
T Consensus 177 vvvHsFtGs~e~~~~~lk~~~yig~~g~~~k~~--e~~~vlr~iP~erlllETDsP~~~pk~~~~~~~~~~~~~~~~~~~ 254 (296)
T KOG3020 177 VVVHSFTGSAEEAQKLLKLGLYIGFTGCSLKTE--ENLEVLRSIPLERLLLETDSPYCGPKPSSHAGPKYVKTLFSESYP 254 (296)
T ss_pred EEEEECCCCHHHHHHHHHCCEEECCCCEEEECH--HHHHHHHHCCHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 599851698999999997058952464565226--568888618776703215885436775455662233224443213
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88758824499999999987289989999999999999842
Q gi|254780215|r 215 QGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 215 r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~ 255 (262)
...+|+|+++..+++.+|++++++.+++++++++|+.|+|+
T Consensus 255 ~~~~neP~~~~~~~e~va~~k~~~~ee~~~~~~~Nt~rl~~ 295 (296)
T KOG3020 255 LKGRNEPCNVLQVAEVVAEAKDLDLEEVAEATYENTIRLFK 295 (296)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 43467746899999999986269999999999998998745
No 9
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=100.00 E-value=5.9e-32 Score=233.35 Aligned_cols=234 Identities=27% Similarity=0.384 Sum_probs=190.7
Q ss_pred CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHH------H----HHHHHH----HHHHCCCCCCCCCCCCCC
Q ss_conf 91686138887565226899999999869989999167987------7----899999----998557233211244544
Q gi|254780215|r 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVK------D----FVPLIK----LCQDYPSSIFCSVGTHPC 66 (262)
Q Consensus 1 M~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~------~----~~~~~~----l~~~~p~~i~~a~GiHP~ 66 (262)
|+||+|.|++.+.|+ | ++++..+||..++.++.+|. . |.+.+. -++++.-.+++|+|+||-
T Consensus 1 ~~iD~HiH~d~r~~e-D----lekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr 75 (254)
T COG1099 1 MYIDSHIHLDVRGFE-D----LEKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPR 75 (254)
T ss_pred CCCCCCCCCCCCCHH-H----HHHHHHHCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCEEEEEECCCCC
T ss_conf 930442122434477-9----99999838166642036887766688999999999722531688608304677333777
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC-H----HHHHHHHHHH
Q ss_conf 3344678899885310013332100446775533221110246789999876642044203300-0----2333579998
Q gi|254780215|r 67 HAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS-R----SADDDMAAIL 141 (262)
Q Consensus 67 ~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~-r----~a~~~~l~iL 141 (262)
.+.+..+..+..|..++.+..++||||||||+- + +..+++|+.||+||++++.|++||+ | .+...+++++
T Consensus 76 ~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~---t--~~E~evf~~QL~LA~e~dvPviVHTPr~nK~e~t~~ildi~ 150 (254)
T COG1099 76 AIPPELEEVLEELEELLSNEDVVAIGEIGLEEA---T--DEEKEVFREQLELARELDVPVIVHTPRRNKKEATSKILDIL 150 (254)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC---C--HHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 789059999999886516478367640332217---8--88999999999999874996799678776056789999999
Q ss_pred HHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCH
Q ss_conf 53100036753311214640234432103520202332211333223333210566717983078667877768875882
Q gi|254780215|r 142 QEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEP 221 (262)
Q Consensus 142 ~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P 221 (262)
.+...++..-+|-|+ |.+++...++.|||.+++-.-..-...+..++++++.-+||++.||+-|. ..+|
T Consensus 151 ~~~~l~~~lvvIDH~---N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ey~~~r~ilnSD~~s~--------~sd~ 219 (254)
T COG1099 151 IESGLKPSLVVIDHV---NEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYGAERIILNSDAGSA--------ASDP 219 (254)
T ss_pred HHCCCCHHHEEHHCC---CHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCC--------CCCC
T ss_conf 874998012101206---58779999725535778853776888999999998186629983665544--------3662
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 44999999999872899899999999999998425
Q gi|254780215|r 222 AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 222 ~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
..+++|+-.+ +.+|++.+++.+..++|+++||+.
T Consensus 220 lavprtal~m-~~~gv~~~~i~kV~~~NA~~~~~l 253 (254)
T COG1099 220 LAVPRTALEM-EERGVGEEEIEKVVRENALSFYGL 253 (254)
T ss_pred HHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 0215999999-980577999999999989998576
No 10
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=99.68 E-value=4.9e-15 Score=120.79 Aligned_cols=242 Identities=22% Similarity=0.309 Sum_probs=167.6
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC----------CCHHHHHHHH----HHH----HHCCCCCCCCCCC
Q ss_conf 168613888756522689999999986998999916----------7987789999----999----8557233211244
Q gi|254780215|r 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA----------IKVKDFVPLI----KLC----QDYPSSIFCSVGT 63 (262)
Q Consensus 2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~----------~~~~~~~~~~----~l~----~~~p~~i~~a~Gi 63 (262)
++|.|.|++-.. ....+++.+...+|-..++.+. ++.+++.++. .++ +.++...++.+|+
T Consensus 7 v~DnH~H~np~~--gg~~ea~~~F~rAGGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGv 84 (285)
T COG1831 7 VTDNHFHLNPKN--GGALEAARRFHRAGGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGV 84 (285)
T ss_pred EECCEEEECCCC--CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 002504326776--747999999997489579986035200367888688999999999999999987547215788416
Q ss_pred CCCCCCC---C--C--------HHHHHHHHHHCCCCCCCEECCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 5443344---6--7--------889988531001333210044677553322-111024678999987664204420330
Q gi|254780215|r 64 HPCHAHE---E--N--------EVLVDELVCLASHPRVVAIGETGLDRYHNA-HTIEEQKVVFLRHIEASRITGIPLVIH 129 (262)
Q Consensus 64 HP~~~~~---~--~--------~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~-~~~e~Q~~vF~~ql~lA~e~~~pv~iH 129 (262)
||-.+.. . . ..-++...++..+.+++||||+|=..|... +-++.-.++++.-+++|++.+.||++|
T Consensus 85 HPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLH 164 (285)
T COG1831 85 HPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLH 164 (285)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 79999999984468678999999999999999850332331025888898999999999999999999853479837975
Q ss_pred CHHHHHHHHHHHHHHHH---CCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 00233357999853100---036753311214640234432103520202332211333223333210566717983078
Q gi|254780215|r 130 SRSADDDMAAILQEEMK---KGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDS 206 (262)
Q Consensus 130 ~r~a~~~~l~iL~~~~~---~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDs 206 (262)
+-+...+.++-+.++.+ ..+.++|.|--++.. ..+-..|.+=|+.. .| +..++.++. -.|.|+|||
T Consensus 165 tes~~~~~~~~i~~~ak~~G~~~~~VVkHha~p~v---~~~~~~Gi~pSV~a----sr-~~v~~a~~~--g~~FmmETD- 233 (285)
T COG1831 165 TESLDEETYEEIAEMAKEAGIKPYRVVKHHAPPLV---LKCEEVGIFPSVPA----SR-KNVEDAAEL--GPRFMMETD- 233 (285)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC---HHHHHCCCCCCCCC----CH-HHHHHHHHC--CCCEEEECC-
T ss_conf 37788678999999999818996415761478320---02332276776656----56-889999853--875575402-
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 667877768875882449999999998728998999999999999984256
Q gi|254780215|r 207 PYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKI 257 (262)
Q Consensus 207 P~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~ 257 (262)
|+-.-...|..-.|..+++-++.+.+--..+.|.+.++..+|-.++|+..
T Consensus 234 -yIDDp~RpgavL~PktVPrr~~~i~~~g~~~ee~vy~i~~E~pe~VYg~~ 283 (285)
T COG1831 234 -YIDDPRRPGAVLGPKTVPRRTREILEKGDLTEEDVYRIHVENPERVYGIE 283 (285)
T ss_pred -CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf -45786668874796204499999998558838899999876779873856
No 11
>pfam04909 Amidohydro_2 Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.
Probab=99.17 E-value=7.9e-09 Score=79.48 Aligned_cols=233 Identities=16% Similarity=0.154 Sum_probs=138.3
Q ss_pred EEEECCCCCHH---------------HHCCHHHHHHHHHHCCCCEEEEECCCH-HHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 68613888756---------------522689999999986998999916798-77899999998557233211244544
Q gi|254780215|r 3 IDTHCHLLLPD---------------FDEDRHDVIMRAHQANVLKMIAIAIKV-KDFVPLIKLCQDYPSSIFCSVGTHPC 66 (262)
Q Consensus 3 iD~H~HL~~~~---------------~~~d~~~~i~~a~~~gv~~~i~~~~~~-~~~~~~~~l~~~~p~~i~~a~GiHP~ 66 (262)
||+|+|+-... .....+.....+...|+...+.+.... .......+.+.++|+.+...+++-|.
T Consensus 1 ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 80 (270)
T pfam04909 1 IDAHAHLWDPGALDRLPLMDRRGYDPALASPADLLVLGAALGVARAVIVAASCRGANNRVLAEALKRPGRFVGGAALPPP 80 (270)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHCHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 92605643587656688787667788888999999998984983499954874030469899998479975999997389
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH---------HHH-H
Q ss_conf 334467889988531001333210044677553322111024678999987664204420330002---------333-5
Q gi|254780215|r 67 HAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS---------ADD-D 136 (262)
Q Consensus 67 ~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~---------a~~-~ 136 (262)
. .+...+++.+.+.+..++||.-.. . ....... -...+....+.|.++++||.+|+-. ... .
T Consensus 81 ~----~~~a~~el~r~~~~~g~~Gv~l~~-~--~~~~~~~-~~~~~~~~~~~~~e~~~pv~iH~~~~~~~~~~~~~~~~~ 152 (270)
T pfam04909 81 D----PEDAVAELERRLAELGFRGVRLNP-H--PGGGPLL-DPRLDRPIYEALAELGLPVDLHTGTGFAGEDTDASQPLL 152 (270)
T ss_pred C----HHHHHHHHHHHCCCCCEEEEEECC-C--CCCCCCC-CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHH
T ss_conf 7----477999999974838806999768-5--7887776-668899999999986998999458887765646136999
Q ss_pred HHHHHHHHHHCCCCCCCC-EECCCCH---HHHHHHHCC-CCEEECCCCCCH------HHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 799985310003675331-1214640---234432103-520202332211------33322333321056671798307
Q gi|254780215|r 137 MAAILQEEMKKGPFPFVI-HCFSSSQ---KLADICLEL-GGYISFTGMITF------PKYDALRAIARGIPMDRVLVETD 205 (262)
Q Consensus 137 ~l~iL~~~~~~~~~~~i~-H~FsG~~---~~~~~~l~~-g~y~S~~g~i~~------~~~~~~~e~v~~iPldriLlETD 205 (262)
+-.+++++ +..++|+ |+=.+.. +.+..+-+. +.|+-+++.... .....++.++..++.||||.-||
T Consensus 153 ~~~~~~~~---P~l~iv~~H~G~~~~~~~~~~~~~~~~~nv~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~drvmfGSD 229 (270)
T pfam04909 153 LEGLARRF---PDLKIVLDHAGGPWIGWREALALLARRPNVYVKLSGLYRDSPDPPAADPPALAELIEAFGPDRILFGSD 229 (270)
T ss_pred HHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC
T ss_conf 99999978---998599978988856499999999869957985110323467862017999999999879992999579
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 866787776887588244999999999872899899999999999998425
Q gi|254780215|r 206 SPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 206 sP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
-|+..... |. . ....+....+++.++..++..+|+.|||+.
T Consensus 230 ~P~~~~~~-------~~--~-~~~~~~~~~~ls~~~~~~i~~~NA~rl~~l 270 (270)
T pfam04909 230 YPHPPLER-------PL--A-ALDLLDLLDALSEEEREKILGGNAARLYGL 270 (270)
T ss_pred CCCCCCCC-------CH--H-HHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99998656-------87--7-999998622999999999997889998582
No 12
>PRK09875 putative hydrolase; Provisional
Probab=99.01 E-value=7.3e-08 Score=73.03 Aligned_cols=227 Identities=16% Similarity=0.208 Sum_probs=144.9
Q ss_pred HHHHHHCCCCEEEEECCCH--HHHHHHHHHHHHCCCCCCCCCCCCCC-----CCCCCCHHHHH-----HHHHHCCC--CC
Q ss_conf 9999986998999916798--77899999998557233211244544-----33446788998-----85310013--33
Q gi|254780215|r 22 IMRAHQANVLKMIAIAIKV--KDFVPLIKLCQDYPSSIFCSVGTHPC-----HAHEENEVLVD-----ELVCLASH--PR 87 (262)
Q Consensus 22 i~~a~~~gv~~~i~~~~~~--~~~~~~~~l~~~~p~~i~~a~GiHP~-----~~~~~~~~~~~-----~l~~l~~~--~~ 87 (262)
+.+.++.|+..+|-+++-- .+-....+++++-.-+|..+-|+|.. ++.....+.+. ++.+-+.. -+
T Consensus 40 l~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~IV~~TG~y~~~~~p~~~~~~s~e~la~~~i~ei~~Gi~gT~ik 119 (292)
T PRK09875 40 MNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELK 119 (292)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999809997997788776859999999999729909981777877668877761799999999999998045677835
Q ss_pred CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH-H-HHHHHHHHHHHHHHCCCCCCCC-EEC-CCCHHH
Q ss_conf 21004467755332211102467899998766420442033000-2-3335799985310003675331-121-464023
Q gi|254780215|r 88 VVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR-S-ADDDMAAILQEEMKKGPFPFVI-HCF-SSSQKL 163 (262)
Q Consensus 88 ~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r-~-a~~~~l~iL~~~~~~~~~~~i~-H~F-sG~~~~ 163 (262)
.-.|||||-.+.. -++ ..+++|++--..+++.+.||.+|+- + ..-+.+++|++... .+.++++ |+- +.+.+.
T Consensus 120 aG~Igeig~~~~~-it~--~E~k~lrAaA~A~~~TG~pI~~Ht~~g~~g~e~l~il~e~Gv-d~~rVvigH~D~~~D~~~ 195 (292)
T PRK09875 120 AGIIAEIGSSEGK-ITP--LEEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGV-DLSRVTVGHCDLKDNLDN 195 (292)
T ss_pred CEEEEEEECCCCC-CCH--HHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCC-CHHHEEEECCCCCCCHHH
T ss_conf 2155554047898-898--999999999999998799768668888447999999998498-921578965789899899
Q ss_pred HHHHHCCCCEEECCCC--CCH----HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHC
Q ss_conf 4432103520202332--211----3332233332105667179830786678777688758824499-99999998728
Q gi|254780215|r 164 ADICLELGGYISFTGM--ITF----PKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVV-NTAKALAKEKD 236 (262)
Q Consensus 164 ~~~~l~~g~y~S~~g~--i~~----~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~-~~~~~iA~i~~ 236 (262)
..++++.|+|++|-.. ..| .+.+-+.++++.==.||||+=.|.-...+....|...- .+|. ..+-.+ +-+|
T Consensus 196 ~~~la~~G~~l~fD~~G~~~~~pd~~r~~~l~~L~~~G~~drIlLS~Di~~k~~l~~~GG~Gy-~~i~~~~iP~L-~~~G 273 (292)
T PRK09875 196 ILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGY-DYLLTTFIPQL-RQSG 273 (292)
T ss_pred HHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCC-HHHHHHHHHHH-HHCC
T ss_conf 999996597897567873024975999999999996687552785041213667551599970-55898788999-9869
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 998999999999999984
Q gi|254780215|r 237 VSYEDLMEETTKNALKLF 254 (262)
Q Consensus 237 ~~~eei~~~~~~N~~~~f 254 (262)
++.+++.+.+.+|=.|+|
T Consensus 274 vs~~~I~~ilv~NP~r~F 291 (292)
T PRK09875 274 FSQADVDVMLRENPSQFF 291 (292)
T ss_pred CCHHHHHHHHHHCHHHHC
T ss_conf 999999999997869760
No 13
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=98.99 E-value=1.1e-07 Score=71.94 Aligned_cols=226 Identities=19% Similarity=0.198 Sum_probs=146.8
Q ss_pred HHHHHHCCCCEEEEECCC-H-HHHHHHHHHHHHCCCCCCCCCCCCCC-----CCCCCCHHHHHH-----HHHHCCCC--C
Q ss_conf 999998699899991679-8-77899999998557233211244544-----334467889988-----53100133--3
Q gi|254780215|r 22 IMRAHQANVLKMIAIAIK-V-KDFVPLIKLCQDYPSSIFCSVGTHPC-----HAHEENEVLVDE-----LVCLASHP--R 87 (262)
Q Consensus 22 i~~a~~~gv~~~i~~~~~-~-~~~~~~~~l~~~~p~~i~~a~GiHP~-----~~~~~~~~~~~~-----l~~l~~~~--~ 87 (262)
+...++.|+..+|-++.- . .+-....+++++-.-+|..+-|+|.+ ++.....+.+.. +..-+... +
T Consensus 38 l~~~k~~Gg~tiVD~T~~g~GRd~~~L~~is~~tgv~IV~~TG~y~~~~~p~~~~~~s~e~la~~~v~ei~~Gi~gT~ik 117 (293)
T cd00530 38 LKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATGFYKDAFYPEWVRLRSVEELTDMLIREIEEGIEGTGIK 117 (293)
T ss_pred HHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999848987995478666769999999999639828967878877668978870689999999999998404688834
Q ss_pred CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC-HH--HHHHHHHHHHHHHHCCCCCCCC-EECC-CCHH
Q ss_conf 2100446775533221110246789999876642044203300-02--3335799985310003675331-1214-6402
Q gi|254780215|r 88 VVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS-RS--ADDDMAAILQEEMKKGPFPFVI-HCFS-SSQK 162 (262)
Q Consensus 88 ~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~-r~--a~~~~l~iL~~~~~~~~~~~i~-H~Fs-G~~~ 162 (262)
.-.|||+|-. ..-++ ..+++|++--..+++.+.||.+|+ ++ +.-+.+++|.+.. -.+.++++ |+-. -+.+
T Consensus 118 aG~Ik~~~~~--~~it~--~E~k~lrAaA~A~~~TG~pI~~Ht~~g~~~~~e~~~il~~~G-~d~~rvvigH~D~~~D~~ 192 (293)
T cd00530 118 AGIIKEAGGS--PAITP--LEEKVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEEEG-VDPSKVVIGHLDRNDDPD 192 (293)
T ss_pred CCEEEECCCC--CCCCH--HHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHCC-CCHHHEEEECCCCCCCHH
T ss_conf 2068761468--99988--999999999999998798289827988653099999999859-892257896368989999
Q ss_pred HHHHHHCCCCEEECCCC--CC-------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCHHHHH-HHHHHH
Q ss_conf 34432103520202332--21-------1333223333210566717983078667877-7688758824499-999999
Q gi|254780215|r 163 LADICLELGGYISFTGM--IT-------FPKYDALRAIARGIPMDRVLVETDSPYIVPV-SCQGKRNEPAYVV-NTAKAL 231 (262)
Q Consensus 163 ~~~~~l~~g~y~S~~g~--i~-------~~~~~~~~e~v~~iPldriLlETDsP~l~p~-~~r~~~n~P~~i~-~~~~~i 231 (262)
...++++.|+|++|-.. .. ..+.+.+.++++.==.||||+=+|.-+.... ++-|... ..+|. ..+-.+
T Consensus 193 ~~~~la~~G~~l~fD~~G~~~~~~~~~d~~r~~~l~~Li~~G~~d~illS~D~~~~~~~~~~~Gg~G-y~~i~~~~iP~L 271 (293)
T cd00530 193 YLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGGHG-YDYILTRFIPRL 271 (293)
T ss_pred HHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHCCCCC-HHHHHHHHHHHH
T ss_conf 9999997698898777870135789998999999999997787573898544121555654079998-788999899999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 98728998999999999999984
Q gi|254780215|r 232 AKEKDVSYEDLMEETTKNALKLF 254 (262)
Q Consensus 232 A~i~~~~~eei~~~~~~N~~~~f 254 (262)
+-+|++.+.+.+.+..|-.|+|
T Consensus 272 -~~~Gv~~~~i~~ilv~NP~r~L 293 (293)
T cd00530 272 -RERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred -HHCCCCHHHHHHHHHHCHHHHC
T ss_conf -9869999999999986979659
No 14
>pfam02126 PTE Phosphotriesterase family.
Probab=98.99 E-value=1.6e-07 Score=70.76 Aligned_cols=229 Identities=18% Similarity=0.197 Sum_probs=145.8
Q ss_pred HHHHHHCCCCEEEEECCCH--HHHHHHHHHHHHCCCCCCCCCCCCC-----CCCCCCCHHHHH-----HHHHHCCCC--C
Q ss_conf 9999986998999916798--7789999999855723321124454-----433446788998-----853100133--3
Q gi|254780215|r 22 IMRAHQANVLKMIAIAIKV--KDFVPLIKLCQDYPSSIFCSVGTHP-----CHAHEENEVLVD-----ELVCLASHP--R 87 (262)
Q Consensus 22 i~~a~~~gv~~~i~~~~~~--~~~~~~~~l~~~~p~~i~~a~GiHP-----~~~~~~~~~~~~-----~l~~l~~~~--~ 87 (262)
+.+.++.|+..+|-++.-- .+-....+++++-.-+|..+-|+|- .++.....+.+. ++..-+... +
T Consensus 44 l~~fk~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~IV~~TG~y~~~~~p~~~~~~s~e~la~~~i~ei~~Gi~~T~ik 123 (308)
T pfam02126 44 LLYLKARGVRTIVENTTTGLGRDVHTLAWVARATGVHIVAATGLYVDADHPLATRLRSVEELTDVFVREIEHGIDGTGIK 123 (308)
T ss_pred HHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999828987995689776869999999999639839974766678769876662699999999999998436688745
Q ss_pred CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH---HHHHHHHHHHHHHHCCCCCCCC-EECC-CCHH
Q ss_conf 210044677553322111024678999987664204420330002---3335799985310003675331-1214-6402
Q gi|254780215|r 88 VVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS---ADDDMAAILQEEMKKGPFPFVI-HCFS-SSQK 162 (262)
Q Consensus 88 ~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~---a~~~~l~iL~~~~~~~~~~~i~-H~Fs-G~~~ 162 (262)
.--|||+|-. +..++. .+++|++--...++.+.||++|+-. +-.+.+++|++.. -.+.++++ |+-. -+.+
T Consensus 124 aG~Ik~~~~~--~~it~~--E~k~lrAaA~A~~~TG~pI~~H~~~~~~~~~e~l~il~e~G-vd~~rvvigH~D~~~D~~ 198 (308)
T pfam02126 124 AGIIGEIGTS--WKLTPS--EEKVLEAAAHAHAQTGCPVSTHTGASPRAGLQQIRILQEEG-VDLSRVVIGHCDDIDDLK 198 (308)
T ss_pred CEEEEEECCC--CCCCHH--HHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHCC-CCHHHEEEECCCCCCCHH
T ss_conf 2078883058--999878--99999999999997699379707987555199999999859-894467885268889989
Q ss_pred HHHHHHCCCCEEECCCC------------CCH----HHHHHHHHHHHCCCCCCEEEEECCCCC-CCCCCCCCCCCHHHHH
Q ss_conf 34432103520202332------------211----333223333210566717983078667-8777688758824499
Q gi|254780215|r 163 LADICLELGGYISFTGM------------ITF----PKYDALRAIARGIPMDRVLVETDSPYI-VPVSCQGKRNEPAYVV 225 (262)
Q Consensus 163 ~~~~~l~~g~y~S~~g~------------i~~----~~~~~~~e~v~~iPldriLlETDsP~l-~p~~~r~~~n~P~~i~ 225 (262)
..+++++.|+|++|-.. +-+ .+.+.+.++++.==.||||+=.|.-.. .-.++.|...-+.+|.
T Consensus 199 y~~~la~~G~~l~fD~~G~~~~~~~~~~~~~~~~d~~r~~~i~~Li~~Gy~drIlLS~D~~~k~~~~~~gg~g~g~~~i~ 278 (308)
T pfam02126 199 YLLELAALGCYLGYDLFGTELLGYQLSPDIDIPPDQKRIRRVHALVDRGYEDRILLSHDITTKFRSMKYGGHGYSPDLIL 278 (308)
T ss_pred HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEECCCCCCCHHHHH
T ss_conf 99999974978985356621233444555689998999999999997798574897256454002101389886468899
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999987289989999999999999842
Q gi|254780215|r 226 NTAKALAKEKDVSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 226 ~~~~~iA~i~~~~~eei~~~~~~N~~~~f~ 255 (262)
..+--.-+-+|++.+++.+.+..|-.|+|.
T Consensus 279 ~~~iP~L~~~Gv~~~~i~~ilv~NP~r~lt 308 (308)
T pfam02126 279 TNVIPKLRQRGVTQEVLDKILVENPKQFLT 308 (308)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCHHHHCC
T ss_conf 988899998699999999999878697629
No 15
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=98.95 E-value=1.4e-07 Score=71.08 Aligned_cols=234 Identities=19% Similarity=0.181 Sum_probs=133.7
Q ss_pred EEEEECCCCCHHHH--------------------CCHHHHHHHHHHCCCCEEEEECCCHH------HHHHHHHHHHHCCC
Q ss_conf 16861388875652--------------------26899999999869989999167987------78999999985572
Q gi|254780215|r 2 LIDTHCHLLLPDFD--------------------EDRHDVIMRAHQANVLKMIAIAIKVK------DFVPLIKLCQDYPS 55 (262)
Q Consensus 2 ~iD~H~HL~~~~~~--------------------~d~~~~i~~a~~~gv~~~i~~~~~~~------~~~~~~~l~~~~p~ 55 (262)
|||+|+|+....+. ......+.++.++||+.++..+.... ......+.+.....
T Consensus 1 fID~H~H~~~~~~~~~~~~~~~~~~~~~t~e~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG 80 (275)
T ss_pred CEECCCCHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 96067447888786074158705450599999999999999999976962998651358846669999999999725558
Q ss_pred -CCCCCCCCCCCCCCCC---CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
Q ss_conf -3321124454433446---788998853100133321004467755332211102467899998766420442033000
Q gi|254780215|r 56 -SIFCSVGTHPCHAHEE---NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR 131 (262)
Q Consensus 56 -~i~~a~GiHP~~~~~~---~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r 131 (262)
.+..+.+......... .+...+.+..... ....+++-.+.. .......+.+.+.+++|++++.|+.+|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~e~~~~~~~~a~~~~~~i~~H~~ 154 (275)
T cd01292 81 IRVVLGLGIPGVPAAVDEDAEALLLELLRRGLE-LGAVGLKLAGPY-----TATGLSDESLRRVLEEARKLGLPVVIHAG 154 (275)
T ss_pred EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEECCC-----CCCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 689801686777733321047999999997256-567469886687-----78899999999999999976993899736
Q ss_pred HHHHH--HHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH------HHHHHHHHHCCCCCCEEEE
Q ss_conf 23335--799985310003675331121464023443210352020233221133------3223333210566717983
Q gi|254780215|r 132 SADDD--MAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPK------YDALRAIARGIPMDRVLVE 203 (262)
Q Consensus 132 ~a~~~--~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~------~~~~~e~v~~iPldriLlE 203 (262)
....+ .++-+.+....++.-++.||-.-+.+.++.+.+.|..++++|.....- ...++++++. --++-|-
T Consensus 155 e~~~~~~~~~~l~~~~~l~~~~~~~H~~~~~~~~~~~l~~~g~~v~~~P~sn~~l~~~~~~~~~~~~~~~~--G~~v~Lg 232 (275)
T cd01292 155 ELPDPTRALEDLVALLRLGGRVVIGHVSHLDPELLELLKEAGVSLEVCPLSNYLLGRDGEGAEALRRLLEL--GIRVTLG 232 (275)
T ss_pred CCCCCCHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHCCCEEEECCHHHHHHCCCCCCCCCHHHHHHC--CCEEEEE
T ss_conf 87544359999997488899858887540799999999985995998815677744476798778999968--7979983
Q ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH
Q ss_conf 078667877768875882449999999998728--9989999999999999
Q gi|254780215|r 204 TDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKD--VSYEDLMEETTKNALK 252 (262)
Q Consensus 204 TDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~--~~~eei~~~~~~N~~~ 252 (262)
||+|... .+.++....+..+.... ++.+++.+..+.|.-|
T Consensus 233 tD~~~~~---------~~~~~~~~m~~~~~~~~~~~~~~~~l~~aT~n~Ar 274 (275)
T cd01292 233 TDGPPHP---------LGTDLLALLRLLLKVLRLGLSLEEALRLATINPAR 274 (275)
T ss_pred CCCCCCC---------CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 8999889---------98389999999999756489999999998387427
No 16
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=98.74 E-value=2.8e-06 Score=62.51 Aligned_cols=234 Identities=20% Similarity=0.214 Sum_probs=133.6
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCC--C
Q ss_conf 168613888756522689999999986998999916------798778999999985572332112-4454433446--7
Q gi|254780215|r 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYPSSIFCSV-GTHPCHAHEE--N 72 (262)
Q Consensus 2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p~~i~~a~-GiHP~~~~~~--~ 72 (262)
|||+|+|+... .....+..+.+...|++.++.-. .........++-+++.|..++..+ ..-|....+. .
T Consensus 11 fID~HvHiess--~~tP~~~a~~~l~~GtTTvv~Dpheianv~G~~gi~~~l~~~~~~p~~~~~~~ps~vPa~~~e~~Ga 88 (422)
T cd01295 11 FIDAHLHIESS--MLTPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWMLPSCVPATPFETSGA 88 (422)
T ss_pred EEECCCCCCCC--CCCHHHHHHHHHHCCCEEEECCCHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 74312788666--5499999999985682799478789987378999999999861288618997777777588777888
Q ss_pred HHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 88998853100133321004467755332211102467899998766420442033000233357999853100036753
Q gi|254780215|r 73 EVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPF 152 (262)
Q Consensus 73 ~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~ 152 (262)
....+.+.++...+++.+.||+- ||-. ......+++ +-++.|.+.++|+.-|+.++.++.+. .+...+..
T Consensus 89 ~~~~~~~~~~~~~~~v~glgEvm-~~~~---v~~~d~~~~-~~i~~a~~~g~~v~GHapg~~g~~l~---~~i~aGi~-- 158 (422)
T cd01295 89 ELTAEDIKELLEHPEVVGLGEVM-DFPG---VIEGDDEML-AKIQAAKKAGKPVDGHAPGLSGEELN---AYMAAGIS-- 158 (422)
T ss_pred CCCHHHHHHHHHCCCCCCHHHHC-CCCC---CCCCCHHHH-HHHHHHHHCCCEEEEECCCCCHHHHH---HHHHCCCC--
T ss_conf 27999999986184424233313-6511---246878999-99999996798899978999979999---99975998--
Q ss_pred CCE-ECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 311-2146402344321035202023322113332233332105667179830786678777688758824499999999
Q gi|254780215|r 153 VIH-CFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKAL 231 (262)
Q Consensus 153 i~H-~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~i 231 (262)
.-| |+ +.+.+.+.++.|.|+.+-.....++-..+...+...-.+|+.+=||+.....--..| .+...++..
T Consensus 159 ~dHe~~--~~ee~~e~l~~Gm~v~ir~gs~~~nl~~l~~~i~~~~~~~~~l~TDd~~p~~l~~~G------~ld~~vr~A 230 (422)
T cd01295 159 TDHEAM--TGEEALEKLRLGMYVMLREGSIAKNLEALLPAITEKNFRRFMFCTDDVHPDDLLSEG------HLDYIVRRA 230 (422)
T ss_pred CCCCCC--CHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCC------CHHHHHHHH
T ss_conf 675648--799999998688589997785523799999876652558459992899832355369------799999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9872899899999999999998425
Q gi|254780215|r 232 AKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 232 A~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
-+ .|+++++..+..+-|.-+.||.
T Consensus 231 v~-~Gl~p~~Ai~maT~NpA~~~gl 254 (422)
T cd01295 231 IE-AGIPPEDAIQMATINPAECYGL 254 (422)
T ss_pred HH-CCCCHHHHHHHHHHHHHHHCCC
T ss_conf 98-5999999999987519998599
No 17
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=98.58 E-value=3.2e-06 Score=62.14 Aligned_cols=208 Identities=17% Similarity=0.175 Sum_probs=124.1
Q ss_pred HHHHHHCCCCEEEEEC----CCHHH------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf 9999986998999916----79877------8999999985572332112445443344678899885310013332100
Q gi|254780215|r 22 IMRAHQANVLKMIAIA----IKVKD------FVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAI 91 (262)
Q Consensus 22 i~~a~~~gv~~~i~~~----~~~~~------~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aI 91 (262)
+.-+...++...+..+ ....+ .+...+.+++||+.......+-|..- +...+++++...+..++++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~----~~a~~E~er~v~~~gf~g~ 130 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDP----EAAAEELERRVRELGFVGV 130 (293)
T ss_pred HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCH----HHHHHHHHHHHHHCCCEEE
T ss_conf 767520023157640554322225565431269999998758964678776588976----6699999999986385048
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHH------------HHHHHHHHHHHCCCCCCCC-EECC
Q ss_conf 44677553322111024678999987664204420330002333------------5799985310003675331-1214
Q gi|254780215|r 92 GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADD------------DMAAILQEEMKKGPFPFVI-HCFS 158 (262)
Q Consensus 92 GEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~------------~~l~iL~~~~~~~~~~~i~-H~Fs 158 (262)
.--+..- ...+ .. ..+....+.|.++++||+||+=.... .+-++++++ +..++|+ |+ +
T Consensus 131 ~l~p~~~--~~~~-~~--~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~f---P~l~IVl~H~-G 201 (293)
T COG2159 131 KLHPVAQ--GFYP-DD--PRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKF---PELKIVLGHM-G 201 (293)
T ss_pred EECCCCC--CCCC-CC--HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHC---CCCCEEEEEC-C
T ss_conf 9655534--6788-74--57899999999769988997289976666454667868999999868---9988899925-8
Q ss_pred CCHHHHHHHH-----CCCCEEECCCCCCHHHH-HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6402344321-----03520202332211333-22333321056671798307866787776887588244999999999
Q gi|254780215|r 159 SSQKLADICL-----ELGGYISFTGMITFPKY-DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALA 232 (262)
Q Consensus 159 G~~~~~~~~l-----~~g~y~S~~g~i~~~~~-~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA 232 (262)
.+..+....+ ..+.|+-.++...+.-. ..++.+.. .+.||||-=||.|+-.|. .-...+
T Consensus 202 ~~~p~~~~a~~~a~~~~nvy~d~s~~~~~~~~~~~~~~~~~-~~~dkilFGSD~P~~~~~-------------~~l~~~- 266 (293)
T COG2159 202 EDYPWELEAIELAYAHPNVYLDTSGVRPKYFAPPLLEFLKE-LGPDKILFGSDYPAIHPE-------------VWLAEL- 266 (293)
T ss_pred CCCCCHHHHHHHHHHCCCHHEEECCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCCCCHH-------------HHHHHH-
T ss_conf 87753889999887576520011023665573899999986-067708964798886767-------------779999-
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8728998999999999999984256
Q gi|254780215|r 233 KEKDVSYEDLMEETTKNALKLFSKI 257 (262)
Q Consensus 233 ~i~~~~~eei~~~~~~N~~~~f~~~ 257 (262)
...+++.+...+.++.|+.|+|+..
T Consensus 267 ~~l~l~~e~k~kiL~~NA~rll~l~ 291 (293)
T COG2159 267 DELGLSEEVKEKILGENAARLLGLD 291 (293)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 8648999999999987099996868
No 18
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=98.53 E-value=5.7e-06 Score=60.42 Aligned_cols=231 Identities=18% Similarity=0.271 Sum_probs=111.8
Q ss_pred EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEECCC-HHHHHHHHHHHHHCCCCCCCC-----CCCCCCC-CCCCC
Q ss_conf 16861388875--652268999999998699899991679-877899999998557233211-----2445443-34467
Q gi|254780215|r 2 LIDTHCHLLLP--DFDEDRHDVIMRAHQANVLKMIAIAIK-VKDFVPLIKLCQDYPSSIFCS-----VGTHPCH-AHEEN 72 (262)
Q Consensus 2 ~iD~H~HL~~~--~~~~d~~~~i~~a~~~gv~~~i~~~~~-~~~~~~~~~l~~~~p~~i~~a-----~GiHP~~-~~~~~ 72 (262)
|||.|+|+... .+..+.+. -+...||+.++..|+. ..++....+.+++....+|.. +|+-... ..+..
T Consensus 52 lID~H~H~~~~~~~~~~~~d~---~~~~~GvTTvvdaG~~G~~~~~~~~~~~~~~~t~v~a~lni~~~G~~~~~el~d~~ 128 (365)
T TIGR03583 52 WIDDHTHCFPKSALYYDEPDE---IGVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLNISRIGLVAQDELADLS 128 (365)
T ss_pred EEEEEECCCCCCCCCCCCCCH---HHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECHHHCCCCCCCHHCCCH
T ss_conf 437403577898765547422---11125745598579888657999999865235206888500111564552005601
Q ss_pred HHHHHHHHH-HCCCCC-CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCEEECHHH---HHHHHHHHHHHHH
Q ss_conf 889988531-001333-2100446775533221110246789999876642-044203300023---3357999853100
Q gi|254780215|r 73 EVLVDELVC-LASHPR-VVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRI-TGIPLVIHSRSA---DDDMAAILQEEMK 146 (262)
Q Consensus 73 ~~~~~~l~~-l~~~~~-~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e-~~~pv~iH~r~a---~~~~l~iL~~~~~ 146 (262)
.-..+.... ....+. ++++. .-+...... +.-.+-++.-.+++.+ .++|+++|.-.. .+++++.|+
T Consensus 129 ~~~~~~~~~~~~~~~d~ivGiK-~r~s~~~~~---~~g~~~l~~a~~~~~~~~~lPl~vHig~~p~~~~e~~~~l~---- 200 (365)
T TIGR03583 129 NLDASAVKQAVERYPDFIVGLK-ARMSKSVVG---DNGIEPLEIAKQIQQENLELPLMVHIGSAPPELDEILALME---- 200 (365)
T ss_pred HCCHHHHHHHHHHCCCCEEEEE-EECCCCCCC---CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHH----
T ss_conf 1798999999986757559999-810355125---57776899999999861799759983899825899998742----
Q ss_pred CCCCCCCCEECCCCHH-----------HHHHHHCCCCEEECC---CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 0367533112146402-----------344321035202023---32211333223333210566717983078667877
Q gi|254780215|r 147 KGPFPFVIHCFSSSQK-----------LADICLELGGYISFT---GMITFPKYDALRAIARGIPMDRVLVETDSPYIVPV 212 (262)
Q Consensus 147 ~~~~~~i~H~FsG~~~-----------~~~~~l~~g~y~S~~---g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~ 212 (262)
.+ -++-|||+|... .+....+.|..|-++ +..+|..+.+ ..-+.++.+- +.||-
T Consensus 201 ~G--Di~tH~~~~~~~~il~~~g~v~~~v~~A~~rGv~~dvghg~~sfsf~~a~~--a~~~g~~pdt--istD~------ 268 (365)
T TIGR03583 201 KG--DVLTHCFNGKPNGILRETGEVKPSVLEAYNRGVILDVGHGTASFSFHVAEK--AKRAGIFPDT--ISTDI------ 268 (365)
T ss_pred CC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHH--HHHCCCCCCC--CCCCC------
T ss_conf 38--816776647998525778641389999986885999835876557889998--8636988874--06653------
Q ss_pred CCCCCCCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 768875882-44999999999872899899999999999998425
Q gi|254780215|r 213 SCQGKRNEP-AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 213 ~~r~~~n~P-~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
..+++.|-| ..+..+..++-. .|+|++++.+.++.|.-++|+.
T Consensus 269 ~~~~~~~gp~~~l~~~msk~l~-~G~sL~~vI~~~T~nPAk~l~L 312 (365)
T TIGR03583 269 YIRNRINGPVYSLATVMSKFLA-LGYSLEEVIEKVTKNAAEILKL 312 (365)
T ss_pred CCCCCCCCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCC
T ss_conf 3356668761205899999997-4999999999998899998498
No 19
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=98.53 E-value=4.6e-06 Score=61.04 Aligned_cols=233 Identities=15% Similarity=0.138 Sum_probs=115.6
Q ss_pred EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEECCC-HHHHHHHHH-HHHHCCCCCCCC-----CCCCCCCCCCCC
Q ss_conf 168613888756--52268999999998699899991679-877899999-998557233211-----244544334467
Q gi|254780215|r 2 LIDTHCHLLLPD--FDEDRHDVIMRAHQANVLKMIAIAIK-VKDFVPLIK-LCQDYPSSIFCS-----VGTHPCHAHEEN 72 (262)
Q Consensus 2 ~iD~H~HL~~~~--~~~d~~~~i~~a~~~gv~~~i~~~~~-~~~~~~~~~-l~~~~p~~i~~a-----~GiHP~~~~~~~ 72 (262)
|||.|+|+-... +.-+.+. -+...||+.++..|+. ..++....+ ....-.-.++.. .|+-- ......
T Consensus 59 lID~H~H~~~~~~~~g~~pD~---~~~~~GVTTvVDaGsaG~~n~~~f~~~vi~~sktrv~aflni~~~G~~~-~~e~~d 134 (387)
T PRK12394 59 LIDYHAHVFYDATEGGVRPDM---YMPPNGVTTVVDAGSAGTANFDAFYRTVICASKVRIKAFLTVSPPGQTW-SQENYD 134 (387)
T ss_pred EEEEEECCCCCCCCCCCCCCC---CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEHHHHHHHHHCCCC-CHHHCC
T ss_conf 478734014688657638111---0146785658726998751368888752221032212134546530446-633369
Q ss_pred HHHH--HHHHHHC-CCCC-CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCC
Q ss_conf 8899--8853100-1333-2100446775533221110246789999876642044203300023335799985310003
Q gi|254780215|r 73 EVLV--DELVCLA-SHPR-VVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKG 148 (262)
Q Consensus 73 ~~~~--~~l~~l~-~~~~-~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~ 148 (262)
...+ +.....+ +++. +++|- +.. ......+.-.+.+++-.++|++.++|+++|.-+.--.+-+++... +.+
T Consensus 135 ~~~id~~~~~~~~~~~~d~ivGiK-~r~---~~~~v~~~g~~pl~~a~e~a~~~~lplmvH~~~~~~~~~ei~~~l-r~G 209 (387)
T PRK12394 135 PDNIDENKIHALFRQYRNVLQGLK-LKV---QTEDIAEYGLKPLTESLRIANDLRCPVAIHSTHPVVPMKELVSLL-RRG 209 (387)
T ss_pred HHHCCHHHHHHHHHHCHHHEEEEE-EEE---ECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH-CCC
T ss_conf 655789999999986724235569-998---715534357069999999986559818997889998999999874-569
Q ss_pred CCCCCCEECCCCHHH-----------HHHHHCCCCEEECC-C--CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
Q ss_conf 675331121464023-----------44321035202023-3--221133322333321056671798307866787776
Q gi|254780215|r 149 PFPFVIHCFSSSQKL-----------ADICLELGGYISFT-G--MITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSC 214 (262)
Q Consensus 149 ~~~~i~H~FsG~~~~-----------~~~~l~~g~y~S~~-g--~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~ 214 (262)
-++-|||.|.... +++..++|..|-++ | ...|+.+. +.+..-... -.+.||-+ .
T Consensus 210 --DI~tH~f~~~~~~i~~~~g~v~~~v~~A~~rGv~fDvghG~~sFsf~~a~--~al~~G~~P--dtISTDl~------~ 277 (387)
T PRK12394 210 --DIIAHAFHGKGSTILTDEGAVLAEVRQARERGVIFDAANGRSHFSMNTAR--RAIANGFLP--DIISSDLS------T 277 (387)
T ss_pred --CEEEEECCCCCCCEECCCCCCHHHHHHHHCCCEEEEECCCCCCCCHHHHH--HHHHCCCCC--CEEECCCC------C
T ss_conf --88986215888864688874829999875087689935888854689999--999726886--52404652------0
Q ss_pred CCCCCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8875882-44999999999872899899999999999998425
Q gi|254780215|r 215 QGKRNEP-AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 215 r~~~n~P-~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
+.+.|.| ..++.+..+.= ..|+|++++.+.++.|.-++++.
T Consensus 278 ~~~~~~pv~~l~~~msk~l-~lG~~L~evI~~~T~nPA~~lgl 319 (387)
T PRK12394 278 ITKLAWPVYALPWILSKYL-ALGVALTDVINACTHTPAVLMGM 319 (387)
T ss_pred CCCCCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 1015773667788999998-70899999999986889998098
No 20
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=98.51 E-value=2.1e-05 Score=56.71 Aligned_cols=231 Identities=16% Similarity=0.162 Sum_probs=137.5
Q ss_pred CEEEEECCCCCHH--------------HHCCHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHHHCCCCCCCC-CCC
Q ss_conf 9168613888756--------------52268999999998699899991--679877899999998557233211-244
Q gi|254780215|r 1 MLIDTHCHLLLPD--------------FDEDRHDVIMRAHQANVLKMIAI--AIKVKDFVPLIKLCQDYPSSIFCS-VGT 63 (262)
Q Consensus 1 M~iD~H~HL~~~~--------------~~~d~~~~i~~a~~~gv~~~i~~--~~~~~~~~~~~~l~~~~p~~i~~a-~Gi 63 (262)
|+||||.|+-+.. .+-..++....+...||.+.|.+ +.++.|.+.-++..++.++ ...+ +|+
T Consensus 8 ~~IDtH~Hl~~~~~~~~pw~~~~~~~~~d~~~~dY~~~~~~~gv~~~V~vq~~~~~~D~~~e~~~v~~~~~-~~g~~vg~ 86 (279)
T COG3618 8 MIIDTHAHLWDPGALPYPWLADYEALRRDYLFEDYLALLKAHGVSGGVLVQVNVDPRDNEKELAFVAELAE-RHGGIVGV 86 (279)
T ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHH-HHCCEEEE
T ss_conf 54021346535665578887766666789898999999875486406999436676655999999996477-51865999
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH-HHHHHHHHH
Q ss_conf 5443344678899885310013332100446775533221110246789999876642044203300023-335799985
Q gi|254780215|r 64 HPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA-DDDMAAILQ 142 (262)
Q Consensus 64 HP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a-~~~~l~iL~ 142 (262)
+....++..++|.... ++.+++|= .....-.....+ -..|++-++-...+++++-++.-.. -.+.+..++
T Consensus 87 ----id~~~~e~~a~L~~~~-~~~~~GvR--~~l~~~p~~~~~--a~~~r~~~~rL~~~gl~fdl~~~~~ql~~~i~l~~ 157 (279)
T COG3618 87 ----IDECRPEFAAKLERAR-YPFFRGVR--RNLHVVPDGLFE--APAWRANVERLAKLGLHFDLQVDPHQLPDLIPLAL 157 (279)
T ss_pred ----EECCCCHHHHHHHHHC-CCCCCEEE--EHHHCCCCCCHH--HHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHH
T ss_conf ----8357804899999843-65421000--022037752101--38999999999756970899857645377887785
Q ss_pred HHHHCCCCCCCC-EECCCCH------------HHHHHHHCCCCEEECCCCCCHHHH--------HHHHHHHHCCCCCCEE
Q ss_conf 310003675331-1214640------------234432103520202332211333--------2233332105667179
Q gi|254780215|r 143 EEMKKGPFPFVI-HCFSSSQ------------KLADICLELGGYISFTGMITFPKY--------DALRAIARGIPMDRVL 201 (262)
Q Consensus 143 ~~~~~~~~~~i~-H~FsG~~------------~~~~~~l~~g~y~S~~g~i~~~~~--------~~~~e~v~~iPldriL 201 (262)
+ .+.+++|+ || |.. .+++-.-.-++|+-+||..+|... .-.+.++...|.||++
T Consensus 158 ~---~Pd~~~VldH~--G~p~~~~~~~~~w~~~m~~la~~pNv~~KlSG~~~~~~~~w~~~~v~p~~e~~i~~fg~dR~v 232 (279)
T COG3618 158 K---APDVNFVLDHC--GRPDIKINLEDPWKAALARLARRPNVWAKLSGVYAYSDESWTVEDVRPYVEELIELFGWDRFV 232 (279)
T ss_pred H---CCCCCEEECCC--CCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 3---89998885168--888766566678999999998488769998640013667777888999999999866944267
Q ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 830786678777688758824499999999987289989999999999999842
Q gi|254780215|r 202 VETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 202 lETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~ 255 (262)
-=||-|-..-.+ +....+....++.--|..+-.++...|++|+|+
T Consensus 233 fGSdwPv~~l~~---------~~~~~~~~~~~~v~~~~~er~~i~~~NA~rly~ 277 (279)
T COG3618 233 FGSDWPVTSLES---------DFASWVAATRELVPGDAAERARILVDNARRLYR 277 (279)
T ss_pred ECCCCCCCCCCC---------CHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHC
T ss_conf 507997121357---------769999999987389888999997558998847
No 21
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=98.41 E-value=7.9e-05 Score=52.85 Aligned_cols=240 Identities=16% Similarity=0.159 Sum_probs=115.2
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEEC-CC-----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 1686138887565--22689999999986998999916-79-----8778999999985572332112445443344678
Q gi|254780215|r 2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAIA-IK-----VKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE 73 (262)
Q Consensus 2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~~-~~-----~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~ 73 (262)
+||.|+|+..+.+ .++++.--..|...||..++... ++ +.......+.++.. ..+ .+..++........
T Consensus 16 ~ID~H~H~~~pg~~~~e~~~t~t~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~ 92 (374)
T cd01317 16 LVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDV-GIV--RVLPIGALTKGLKG 92 (374)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCC-CCC--CEEEEEEEECCCCH
T ss_conf 685450359999765144999999998399589997889999989799999999970345-883--04789984548633
Q ss_pred HHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-------------------
Q ss_conf 8998853100133321004467755332211102467899998766420442033000233-------------------
Q gi|254780215|r 74 VLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD------------------- 134 (262)
Q Consensus 74 ~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~------------------- 134 (262)
+.+..+..+... .++++..-+ ....+ ...+.+.++.|+.++.|+.+||.+..
T Consensus 93 ~~l~~~~~l~~~-G~~~~~~~~----~~~~~----~~~l~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~~~~~~~~~~~ 163 (374)
T cd01317 93 EELTEIGELLEA-GAVGFSDDG----KPIQD----AELLRRALEYAAMLDLPIIVHPEDPSLAGGGVMNEGKVASRLGLP 163 (374)
T ss_pred HHHHHHHHHHHC-CCEEEECCC----CCCCC----HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCHHHCCCC
T ss_conf 255657889860-854673499----63457----999999999887549859993798678654665058631520899
Q ss_pred -----HHH---HHHHHHHHHCCCCCC-CCEECC-CCHHHHHHHHCCCCEEE---------CC--------------CCCC
Q ss_conf -----357---999853100036753-311214-64023443210352020---------23--------------3221
Q gi|254780215|r 135 -----DDM---AAILQEEMKKGPFPF-VIHCFS-SSQKLADICLELGGYIS---------FT--------------GMIT 181 (262)
Q Consensus 135 -----~~~---l~iL~~~~~~~~~~~-i~H~Fs-G~~~~~~~~l~~g~y~S---------~~--------------g~i~ 181 (262)
.|. -+++ +.......++ +.|.=+ ++.+.++++.+.|.-++ ++ |.+-
T Consensus 164 ~~p~~~E~~ai~~~~-~la~~~g~~vhi~Hiss~~~l~li~~ar~~G~~vt~e~~p~~L~~~~~~~~~~~~~~k~~PPlr 242 (374)
T cd01317 164 GIPPEAETIMVARDL-ELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALESYDTNAKVNPPLR 242 (374)
T ss_pred CCCHHHHHHHHHHHH-HHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHHCCCCCCCCCCCCC
T ss_conf 999999999999999-9999729848973435588999999998748977999725653588878606676524689878
Q ss_pred HH-HHHHHHHHHHCCCCCCEEEEEC-CCCCCCCC---C----CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 13-3322333321056671798307-86678777---6----88758824499999999987289989999999999999
Q gi|254780215|r 182 FP-KYDALRAIARGIPMDRVLVETD-SPYIVPVS---C----QGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALK 252 (262)
Q Consensus 182 ~~-~~~~~~e~v~~iPldriLlETD-sP~l~p~~---~----r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~ 252 (262)
-+ ..+.+.+.++.=-.| .+=|| +|+..... + -|-..--.+++.....+-+-+.++++++.+.+..|--|
T Consensus 243 ~~~d~~~L~~~l~~g~id--~i~sDH~p~~~~~k~~~~~~a~~G~~g~e~~lp~l~~~~v~~~~lsle~~v~~~s~nPAk 320 (374)
T cd01317 243 SEEDREALIEALKDGTID--AIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLVKGGLLTLPDLIRALSTNPAK 320 (374)
T ss_pred CHHHHHHHHHHHHCCCCE--EEEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 556799999999739934--999689888877745776547767865004699999999985999999999999799999
Q ss_pred HHHH
Q ss_conf 8425
Q gi|254780215|r 253 LFSK 256 (262)
Q Consensus 253 ~f~~ 256 (262)
+||.
T Consensus 321 ~lgl 324 (374)
T cd01317 321 ILGL 324 (374)
T ss_pred HHCC
T ss_conf 9699
No 22
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=98.40 E-value=0.00014 Score=51.09 Aligned_cols=239 Identities=19% Similarity=0.224 Sum_probs=119.4
Q ss_pred EEEEECCCCCHH---HHCCHHHHHHHHHHCCCCEEEEECC------CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 168613888756---5226899999999869989999167------9877899999998557233211244544334467
Q gi|254780215|r 2 LIDTHCHLLLPD---FDEDRHDVIMRAHQANVLKMIAIAI------KVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEEN 72 (262)
Q Consensus 2 ~iD~H~HL~~~~---~~~d~~~~i~~a~~~gv~~~i~~~~------~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~ 72 (262)
+||.|+|+..+. ..+|+..--..|...||..++..-. +.+......+.+++ ..+.-+|+|.--.....
T Consensus 7 ~iD~HvH~r~pg~~~~ked~~s~t~AAa~GGvTtv~~mPnt~p~~~~~~~~~~~~~~a~~---~~~vd~~~~~~~~~~~~ 83 (337)
T cd01302 7 FIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEE---SSYVDFSFHAGIGPGDV 83 (337)
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC---CCCEEEEEEEEEECCCC
T ss_conf 787033257899988643599999999848800799898999998989999999998613---68635766888615755
Q ss_pred HHHHHHHHHHCCCCCCCEECCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH---------------
Q ss_conf 88998853100133321004467755332---211102467899998766420442033000233---------------
Q gi|254780215|r 73 EVLVDELVCLASHPRVVAIGETGLDRYHN---AHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD--------------- 134 (262)
Q Consensus 73 ~~~~~~l~~l~~~~~~~aIGEiGLD~~~~---~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~--------------- 134 (262)
.+++..+.. . |-+|+-.|-. ......-...+.+.++-+.+++.++++||..+-
T Consensus 84 ---~~el~~~~~-~-----g~~~~k~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~HaEr~~~la~~~g~~lhi~Hv 154 (337)
T cd01302 84 ---TDELKKLFD-A-----GINSLKVFMNYYFGELFDVDDGTLMRTFLEIASRGGPVMVHAERAAQLAEEAGANVHIAHV 154 (337)
T ss_pred ---HHHHHHHHH-C-----CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCEEEEEC
T ss_conf ---778999887-6-----7320228987337876547999999999988757997997088899999987998999938
Q ss_pred --HHHHHHHHHHHHCCC---CCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH-HHHHHHHHHCCCCCCEEEEEC-CC
Q ss_conf --357999853100036---75331121464023443210352020233221133-322333321056671798307-86
Q gi|254780215|r 135 --DDMAAILQEEMKKGP---FPFVIHCFSSSQKLADICLELGGYISFTGMITFPK-YDALRAIARGIPMDRVLVETD-SP 207 (262)
Q Consensus 135 --~~~l~iL~~~~~~~~---~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~-~~~~~e~v~~iPldriLlETD-sP 207 (262)
.+.++++++....+. .-+..|.+.=+.+. +.+.|.++-++|.+--+. .+.+.+.++.=-.| .+-|| +|
T Consensus 155 St~~sle~I~~ak~~G~~Vt~Ev~phhL~l~~~~---~~~~~~~~k~~PPLR~~~d~~aL~~~l~~G~ID--~i~SDHaP 229 (337)
T cd01302 155 SSGEALELIKFAKNKGVKVTCEVCPHHLFLDESM---LRLNGAWGKVNPPLRSKEDREALWEGVKNGKID--TIASDHAP 229 (337)
T ss_pred CCHHHHHHHHHHHHCCCCEECCCCHHHHCCCHHH---HHCCCCCEECCCCCCCHHHHHHHHHHHHCCCCC--EEEECCCC
T ss_conf 9989999999988729836646435554299878---713586364079989778999999988749955--89858889
Q ss_pred CCCCCC-----C----CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 678777-----6----88758824499999999987289989999999999999842568
Q gi|254780215|r 208 YIVPVS-----C----QGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKIS 258 (262)
Q Consensus 208 ~l~p~~-----~----r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~~ 258 (262)
+..... + .|-..--..++.++..+.+ .+++.+++.+.+..|--|+||..+
T Consensus 230 ~~~~~K~~~~~f~~a~~G~~glet~lpl~l~~~~~-~~lsl~~~v~~~s~nPAki~gl~~ 288 (337)
T cd01302 230 HSKEEKESGKDIWKAPPGFPGLETRLPILLTEGVK-RGLSLETLVEILSENPARIFGLYP 288 (337)
T ss_pred CCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 89888102467464889875277799999999985-499999999999788999959898
No 23
>PRK07369 dihydroorotase; Provisional
Probab=98.34 E-value=0.00017 Score=50.64 Aligned_cols=238 Identities=17% Similarity=0.161 Sum_probs=115.5
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEE-CCCH-----HHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCC
Q ss_conf 1686138887565--2268999999998699899991-6798-----7789999999855723321124454433--446
Q gi|254780215|r 2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAI-AIKV-----KDFVPLIKLCQDYPSSIFCSVGTHPCHA--HEE 71 (262)
Q Consensus 2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~-~~~~-----~~~~~~~~l~~~~p~~i~~a~GiHP~~~--~~~ 71 (262)
+||.|+|+..+.+ .+++..--..|...|+..++.+ .+.+ +.+....+.+.+ ......+|+|.+ ...
T Consensus 59 ~ID~HvH~~~pg~~~ked~~tgt~AAa~GGvTtv~~mPnt~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~ 134 (419)
T PRK07369 59 LVDLYSHSGEPGFEERETLASLAAAAAAGGFTRVAILPDTSPPLDNPATLARLQQQLQG----PSPPPQLLFWGALTLGG 134 (419)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC----CCCCEEEEEEEEEECCC
T ss_conf 99787457999864304298899999818976999898999998859999999999600----69973999971245386
Q ss_pred CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-----------------
Q ss_conf 788998853100133321004467755332211102467899998766420442033000233-----------------
Q gi|254780215|r 72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD----------------- 134 (262)
Q Consensus 72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~----------------- 134 (262)
....+.++..+... .+ +|. .+..+.. -..++.+-++.++.+++|+++||.+..
T Consensus 135 ~~~~l~el~~l~~~-Gv-----~~f---~~~~~~~-~~~~l~~~l~~~~~~~~~v~~h~ed~~l~~~~~~~~g~~~~~~~ 204 (419)
T PRK07369 135 QGKQLTELAELAAA-GV-----VGF---TDGQPLE-NLALLRRLLEYLAPLGKPVALWPCDRQLAGNGVMREGPDALRLG 204 (419)
T ss_pred CHHHHHHHHHHHHC-CC-----EEE---CCCCCCC-CHHHHHHHHHHHHHCCCEEEEECCCHHHHHCHHHHCCCCCHHCC
T ss_conf 24567766667607-96-----890---4896548-99999999999986399189950689887272654486402028
Q ss_pred -------HHH---HHHHHHHHHCCCCCC-CCEECC-CCHHHHHHHHCCCCEE-----------------------ECCCC
Q ss_conf -------357---999853100036753-311214-6402344321035202-----------------------02332
Q gi|254780215|r 135 -------DDM---AAILQEEMKKGPFPF-VIHCFS-SSQKLADICLELGGYI-----------------------SFTGM 179 (262)
Q Consensus 135 -------~~~---l~iL~~~~~~~~~~~-i~H~Fs-G~~~~~~~~l~~g~y~-----------------------S~~g~ 179 (262)
.|. .+.+. .......++ |.|-=+ .+.+.++++...|.-+ -++|.
T Consensus 205 ~~~rP~~~E~~av~r~i~-lA~~~g~~lhi~HvSs~~~~e~i~~ak~~G~~vt~Et~phhL~l~~~~~~~~~~~~k~~PP 283 (419)
T PRK07369 205 LPGIPASAETAALAALLE-LVAAIGTPVHLMRVSTARSVELIAQAKARGLPITASTTWMHLLLNTEALASYDPNLRLDPP 283 (419)
T ss_pred CCCCCHHHHHHHHHHHHH-HHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCEEECCCHHHHHCCHHHHHCCCCCEEEECC
T ss_conf 998844554699999999-9887538489961685899999998886398089646257554789787275775798589
Q ss_pred CCHHHHHHHHHHHHCCCCCCE-EEEEC-CCCCCCCCCC-------CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 211333223333210566717-98307-8667877768-------87588244999999999872899899999999999
Q gi|254780215|r 180 ITFPKYDALRAIARGIPMDRV-LVETD-SPYIVPVSCQ-------GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNA 250 (262)
Q Consensus 180 i~~~~~~~~~e~v~~iPldri-LlETD-sP~l~p~~~r-------~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~ 250 (262)
+--++ ....+.+.+--..| .+-|| +|+...+... |-..--.+++..+..+..-..++++.+.+.+..|-
T Consensus 284 LR~~~--d~~aLw~al~~G~Id~i~SDHaP~~~~eK~~~f~~ap~G~~Gve~~lpll~~~~V~~g~lsl~~~v~~~s~nP 361 (419)
T PRK07369 284 LGNPS--DRQALIEGIRTGIIDAIAIDHTPYTYEEKTVAFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNP 361 (419)
T ss_pred CCCHH--HHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98988--9999987873697679982888999888448853489983438879999999998749989999999977789
Q ss_pred HHHHHH
Q ss_conf 998425
Q gi|254780215|r 251 LKLFSK 256 (262)
Q Consensus 251 ~~~f~~ 256 (262)
-|+||-
T Consensus 362 Aki~gl 367 (419)
T PRK07369 362 ARCLGL 367 (419)
T ss_pred HHHHCC
T ss_conf 998399
No 24
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=98.34 E-value=2.4e-05 Score=56.34 Aligned_cols=219 Identities=21% Similarity=0.289 Sum_probs=119.5
Q ss_pred EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEECC----CHHHHHHHHHHHHHCCCCCCCCCCCCCCC--C-CC-C
Q ss_conf 16861388875--65226899999999869989999167----98778999999985572332112445443--3-44-6
Q gi|254780215|r 2 LIDTHCHLLLP--DFDEDRHDVIMRAHQANVLKMIAIAI----KVKDFVPLIKLCQDYPSSIFCSVGTHPCH--A-HE-E 71 (262)
Q Consensus 2 ~iD~H~HL~~~--~~~~d~~~~i~~a~~~gv~~~i~~~~----~~~~~~~~~~l~~~~p~~i~~a~GiHP~~--~-~~-~ 71 (262)
|||.|.|.-.. ...-+.+.. +...||..++-.|. +...|.+..--+.+ ..|++-+-+-|-- + ++ +
T Consensus 59 ~iDlHvHvy~ggt~~~v~pd~~---ga~~GvTTvVDAGSaGaanf~gF~r~vie~Sr--~RI~Aflnvs~~Gl~a~nE~~ 133 (386)
T COG3964 59 LIDLHVHVYYGGTEGGVRPDMY---GAPNGVTTVVDAGSAGAANFDGFYRTVIEASR--VRIKAFLNVSPPGLTASNELY 133 (386)
T ss_pred EEEEEEEEECCCCCCCCCHHHC---CCCCCCEEEEECCCCCCCCHHHHHHHHHCCHH--HEEEEEEECCCCCEEEEHHHC
T ss_conf 6544567843897567487770---66678348972677675313567887542023--400024522675312021008
Q ss_pred --CHHHHHHHHH-HCCCCCC----------CEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH---HHHH
Q ss_conf --7889988531-0013332----------1004467755332211102467899998766420442033000---2333
Q gi|254780215|r 72 --NEVLVDELVC-LASHPRV----------VAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR---SADD 135 (262)
Q Consensus 72 --~~~~~~~l~~-l~~~~~~----------~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r---~a~~ 135 (262)
..-+.+.+.. +.+++.+ ..+||-|+ .+ .+.-+++|+.+++|+++|.- .-.+
T Consensus 134 d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~g~~Gi------tP-------l~la~~ia~~~klPlmvHigePp~~~d 200 (386)
T COG3964 134 DPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDIGEYGI------TP-------LTLALRIANDLKLPLMVHIGEPPVLMD 200 (386)
T ss_pred CHHHCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCC------CH-------HHHHHHHHHHCCCCEEEECCCCCCCHH
T ss_conf 81238978999999858570787788754001334687------65-------789999986159966996599996288
Q ss_pred HHHHHHHHHHHCCCCCCCCEECCCCHH-----------HHHHHHCCCCEEECC-CCC--CHHHHHHHHHHHHCCCCCCEE
Q ss_conf 579998531000367533112146402-----------344321035202023-322--113332233332105667179
Q gi|254780215|r 136 DMAAILQEEMKKGPFPFVIHCFSSSQK-----------LADICLELGGYISFT-GMI--TFPKYDALRAIARGIPMDRVL 201 (262)
Q Consensus 136 ~~l~iL~~~~~~~~~~~i~H~FsG~~~-----------~~~~~l~~g~y~S~~-g~i--~~~~~~~~~e~v~~iPldriL 201 (262)
|+++.|.. + -+|-|||+|... .++++.+.|.-|-++ |.- .|.-++ +.+..-+-.+ .
T Consensus 201 EvlerL~~----G--DIitHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~asfsf~vAr--~aia~GllP~--~ 270 (386)
T COG3964 201 EVLERLRR----G--DIITHCFNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGRASFSFNVAR--RAIANGLLPD--I 270 (386)
T ss_pred HHHHHCCC----C--CEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCEEEHHHHH--HHHHCCCCCC--E
T ss_conf 89976357----7--65654036999972266255789999987566489724873202479999--9986577864--2
Q ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 830786678777688758824499999999987--2899899999999999998425
Q gi|254780215|r 202 VETDSPYIVPVSCQGKRNEPAYVVNTAKALAKE--KDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 202 lETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i--~~~~~eei~~~~~~N~~~~f~~ 256 (262)
+-||- ..+.+.|-|. ...+-.++++ .||+.+++.+.+++|.-++.+.
T Consensus 271 ISSDl------h~~~~~n~Pv--~dla~~mSKllalgmpl~~Vi~avT~npA~~i~l 319 (386)
T COG3964 271 ISSDL------HTITKLNGPV--YDLAWIMSKLLALGMPLTDVINAVTHNPAVLIGL 319 (386)
T ss_pred EECCC------EEEEECCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHCC
T ss_conf 32231------0353057618--7899999999872896899999985197877383
No 25
>PRK02382 dihydroorotase; Provisional
Probab=98.26 E-value=0.00023 Score=49.74 Aligned_cols=239 Identities=15% Similarity=0.175 Sum_probs=116.0
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 1686138887565--22689999999986998999916------798778999999985572332112445443344678
Q gi|254780215|r 2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE 73 (262)
Q Consensus 2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~ 73 (262)
+||.|+|+..+.+ .+++..-...|...||+.++... .+.+.+....+.++.. .+.-+|+|---.....
T Consensus 55 ~ID~HvH~~~pg~~~~ed~~tgs~aAa~GGvTTvv~~p~t~p~~~~~~~~~~~~~~~~~~---~~vd~~~~~~~t~~~~- 130 (440)
T PRK02382 55 GIDVHVHFREPGMEHKETWYTGSCSAAAGGVTTVVDQPNTDPPTTDAESFKEKLALAARK---SIVDFGINGGVTGNWE- 130 (440)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC---CEEEEEEEEEECCCCC-
T ss_conf 997450669898654355656689998299259935778899947799999999985668---6568988876359978-
Q ss_pred HHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHH------------------
Q ss_conf 89988531001333210044677553322111024678999987664204420330002333------------------
Q gi|254780215|r 74 VLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADD------------------ 135 (262)
Q Consensus 74 ~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~------------------ 135 (262)
.+.+.+ ..+.++|++.+.......... ...|.+-++.|++++.++.+|+-+..-
T Consensus 131 --~~~l~~----~g~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~v~~H~Ed~~~~~~~~~~~~~~~~~~~~~ 202 (440)
T PRK02382 131 --LEELWR----LGLFAFGEIFMAESTGGMGID--EELFAEALKEITRLDALATIHAEDEDMRLELEKLLKGDDSADAHS 202 (440)
T ss_pred --HHHHHH----CCCCCEEEEEEECCCCCCCCC--HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHC
T ss_conf --899975----677723169997389874729--999999999998659869993388789998678756886867703
Q ss_pred -------H---HHHHHHHHHHCCCCCCCC-EECC-CCHHHHHH------------------HHCCCCEEECCCCCCHHHH
Q ss_conf -------5---799985310003675331-1214-64023443------------------2103520202332211333
Q gi|254780215|r 136 -------D---MAAILQEEMKKGPFPFVI-HCFS-SSQKLADI------------------CLELGGYISFTGMITFPKY 185 (262)
Q Consensus 136 -------~---~l~iL~~~~~~~~~~~i~-H~Fs-G~~~~~~~------------------~l~~g~y~S~~g~i~~~~~ 185 (262)
| +.+.+. .......++++ |.=+ .+.+.+++ +.+.|.+.-++|.+..+
T Consensus 203 ~~rp~~~E~~av~r~i~-la~~~g~~vhi~H~st~~~v~~ir~a~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~-- 279 (440)
T PRK02382 203 AYRPNAAEISAVERALE-VARELGARIHICHISTPEGVDLIREPGVTCEVTPHHLFLSRRDWDRLGTFGKMNPPLRSE-- 279 (440)
T ss_pred CCCCHHHHHHHHHHHHH-HHHHCCCCEEEEECCCHHHHHHHHCCEEEEEECCCHHHCCHHHHHHHCCCCCCCCCCCCH--
T ss_conf 66988999999999999-887539935877548689996543554899972135548716666507630137888868--
Q ss_pred HHHHHHHHCCCCCCE-EEEEC-CCCCCCCCCC-------CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 223333210566717-98307-8667877768-------87588244999999999872899899999999999998425
Q gi|254780215|r 186 DALRAIARGIPMDRV-LVETD-SPYIVPVSCQ-------GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 186 ~~~~e~v~~iPldri-LlETD-sP~l~p~~~r-------~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
.....+.+.+....| ++-|| +|+....... |-..--..++.....+ .-..++++++.+.+..|--++||-
T Consensus 280 ~d~~aL~~~l~~G~id~iasDhaP~~~~~K~~~~~~a~~G~~g~et~lp~~~~~v-~~~~lsle~~v~~~s~nPAki~Gl 358 (440)
T PRK02382 280 HRRKALWNRLNDGTIDMVASDHAPHTEAEKDADIWDAPSGVPGVETMLPLMLAAV-RKNELPLERVIDVTSANPADIFGL 358 (440)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 8999999987559921884388887867736780216689863999999999988-728968999999998889998598
No 26
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=98.24 E-value=0.00067 Score=46.64 Aligned_cols=247 Identities=18% Similarity=0.293 Sum_probs=108.0
Q ss_pred EEEEECCCCC----HHHH-CCHHHHHHHHHHCCCCEEEEE-CCC-----HHHHH-HHHHHHHHCCCCCCCCCCC-C-CCC
Q ss_conf 1686138887----5652-268999999998699899991-679-----87789-9999998557233211244-5-443
Q gi|254780215|r 2 LIDTHCHLLL----PDFD-EDRHDVIMRAHQANVLKMIAI-AIK-----VKDFV-PLIKLCQDYPSSIFCSVGT-H-PCH 67 (262)
Q Consensus 2 ~iD~H~HL~~----~~~~-~d~~~~i~~a~~~gv~~~i~~-~~~-----~~~~~-~~~~l~~~~p~~i~~a~Gi-H-P~~ 67 (262)
|||+|+|+.. ..|. ...+.....+...|+..++.+ +++ +++.. +...+... .-..|...|- | |.
T Consensus 57 ~ID~H~Hi~~~gg~~~~~~~~pe~~~~~~~~~GvTTv~~~~~~~~~~~~~~~~~~~~~~~~~~-gi~~~~~~g~~~~~~- 134 (384)
T PRK10657 57 FIDQHVHIIGGGGEGGFTTRTPEVQLSDLTEAGITTVVGLLGTDSITRSPESLLAKARALEEE-GISAYMYTGSYHVPV- 134 (384)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCCCCCCC-
T ss_conf 100424988888887766689069999999759756945778886567999999999998863-963888516656871-
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCC--CEEECHHH---HHHHHHHH
Q ss_conf 3446788998853100133321004467755332211102467899998766420-442--03300023---33579998
Q gi|254780215|r 68 AHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRIT-GIP--LVIHSRSA---DDDMAAIL 141 (262)
Q Consensus 68 ~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~-~~p--v~iH~r~a---~~~~l~iL 141 (262)
........+ .+..-+++.++|++.+-.++...+......-...+..++.-+ +++ +.+|+..+ ...+.+++
T Consensus 135 -~~~~~~~~~---d~~~~~~v~g~g~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~~~~~~~h~~~~~~~~~~~~~~~ 210 (384)
T PRK10657 135 -KTITGSIEK---DIALIDKVIGVGEIAISDHRSSQPTVEELARLAAEARVGGLLSGKPGVVHFHMGDGKKGLQPLFELL 210 (384)
T ss_pred -CCCCHHHHH---HHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf -001036787---8987887506550653135445788999999999988888862887679998257688999999999
Q ss_pred HHHHHCCCCC-C-CCEECCCCH--HHHHHHHCCCCEEECCCCCCHHH----HHHHHH-HHHCCCCCCEEEEECCCCCCCC
Q ss_conf 5310003675-3-311214640--23443210352020233221133----322333-3210566717983078667877
Q gi|254780215|r 142 QEEMKKGPFP-F-VIHCFSSSQ--KLADICLELGGYISFTGMITFPK----YDALRA-IARGIPMDRVLVETDSPYIVPV 212 (262)
Q Consensus 142 ~~~~~~~~~~-~-i~H~FsG~~--~~~~~~l~~g~y~S~~g~i~~~~----~~~~~e-~v~~iPldriLlETDsP~l~p~ 212 (262)
.+. .-+.. . ..|...... +..-++.+.|.++.++....... .+.++. .-+.++.+++.+-||+.-..|.
T Consensus 211 ~~~--~~~~~~~~~~H~~~~~~l~~~~~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~~~~gi~~~~i~~~sD~~~~~~~ 288 (384)
T PRK10657 211 ENT--DIPISQFLPTHVNRNEPLFEQGLEFAKKGGVIDLTTSIDEEGEVAPAEAIKRALEAGIPLERITLSSDGNGSLPK 288 (384)
T ss_pred HHC--CCCEEEEECCHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 835--984168754032275779999999998288378985666667657499999999818994358996279888654
Q ss_pred CC-CC-----CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 76-88-----7588244999999999872899899999999999998425
Q gi|254780215|r 213 SC-QG-----KRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 213 ~~-r~-----~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
-. .+ ....+..+...+..+..-.++|++++.+.++.|.-+.||.
T Consensus 289 ~~~~~~~~~~g~~~~~t~~~~~~~~v~~~glsl~~av~~~T~nPAk~lgl 338 (384)
T PRK10657 289 FDEDGNLTGLGVASVESLLETLRELVKDYGLSLEDALRPLTSNVARVLKL 338 (384)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 13356615678887888999999999986999999999999999998299
No 27
>PRK09357 pyrC dihydroorotase; Validated
Probab=98.20 E-value=0.00064 Score=46.82 Aligned_cols=239 Identities=18% Similarity=0.203 Sum_probs=111.2
Q ss_pred EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEEC-C-----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCC
Q ss_conf 168613888756--522689999999986998999916-7-----987789999999855723321124454433--446
Q gi|254780215|r 2 LIDTHCHLLLPD--FDEDRHDVIMRAHQANVLKMIAIA-I-----KVKDFVPLIKLCQDYPSSIFCSVGTHPCHA--HEE 71 (262)
Q Consensus 2 ~iD~H~HL~~~~--~~~d~~~~i~~a~~~gv~~~i~~~-~-----~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~--~~~ 71 (262)
|||+|||+..+. ..+++..-...|...||..++... + +.+......+.+++.+ .+ -++|+.+ ...
T Consensus 57 fID~H~H~~~pg~~~~~~~~~g~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~t~~~ 131 (425)
T PRK09357 57 LVDLHVHLREPGQEYKETIETGTRAAAAGGFTTVVAMPNTNPVIDTPEVVEYVLDLAKEAG-VV----DVLPVGAITKGL 131 (425)
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC-CC----EEEEEECCCCCC
T ss_conf 8977716788997630036676899985780589616898777785999999998642048-51----146752135776
Q ss_pred CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-----------------
Q ss_conf 788998853100133321004467755332211102467899998766420442033000233-----------------
Q gi|254780215|r 72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD----------------- 134 (262)
Q Consensus 72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~----------------- 134 (262)
....+..+..+.. ..+.++..-|. + .. . -..+++-++.|++++.|+.+|+.+..
T Consensus 132 ~~~~l~~~~~l~~-~g~~~~s~~~~-~---~~--~--~~~l~~~~~~a~~~~~~~~~h~e~~~l~~~~~~~~g~~~~~~~ 202 (425)
T PRK09357 132 AGEELTEFGALAE-AGVVAFSDDGI-P---VQ--D--ARLMRRALEYAKKLDLLIAQHCEDPSLTEGGVMNEGIVAARLG 202 (425)
T ss_pred CHHHHHHHHHHHH-CCEEEEECCCC-E---EC--C--HHHHHHHHHHHHHCCCEEEECCCCHHHHHCHHHCCCCCHHHCC
T ss_conf 5045677776542-57479813992-3---04--5--8999999988864595699742523344220224686312038
Q ss_pred -------HHHHHHHH--HHHHCCCCCCCC-EECC-CCHHHHHHHHCCCCEEE---------C--------------CCCC
Q ss_conf -------35799985--310003675331-1214-64023443210352020---------2--------------3322
Q gi|254780215|r 135 -------DDMAAILQ--EEMKKGPFPFVI-HCFS-SSQKLADICLELGGYIS---------F--------------TGMI 180 (262)
Q Consensus 135 -------~~~l~iL~--~~~~~~~~~~i~-H~Fs-G~~~~~~~~l~~g~y~S---------~--------------~g~i 180 (262)
.|...+-+ ........++++ |.-+ ++.+.++.+.+.|.-++ + +|.+
T Consensus 203 ~~~~p~~~E~~~i~r~~~la~~~g~~~hi~H~ss~~~le~i~~ak~~G~~vt~e~~p~~l~~t~~~~~~~~~~~k~~PpL 282 (425)
T PRK09357 203 LPGIPEVAEEVAIARDVLLAEETGARYHICHVSTAGSVELIRFAKALGIKVTAEVTPHHLLLTDEDLLTYDGNYKVNPPL 282 (425)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEECHHHHHCCHHHHHCCCCCEEECCCC
T ss_conf 99997678898999999988761992687514616589999999983897523414556528985762368632207986
Q ss_pred CH-HHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 11-33322333321056671798307-866787776-------8875882449999999998728998999999999999
Q gi|254780215|r 181 TF-PKYDALRAIARGIPMDRVLVETD-SPYIVPVSC-------QGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNAL 251 (262)
Q Consensus 181 ~~-~~~~~~~e~v~~iPldriLlETD-sP~l~p~~~-------r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~ 251 (262)
.- .....+.+.++.=-. -.+=|| +|+..-... -|-.+-...++.++..+.+-..++++++.+.++.|.-
T Consensus 283 r~~~~~~~l~~~l~~g~i--~~i~tDh~P~~~~~k~~~~~~~~~G~~g~e~~~~~~~~~~v~~~~lsle~~v~~~T~nPA 360 (425)
T PRK09357 283 RSKEDREALIEALKDGTI--DAIATDHAPHAEEEKECEFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKLSINPA 360 (425)
T ss_pred CCHHHHHHHHHHHHCCCE--EEEEECCCCCCHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 525569999999966988--999968888886773445000778987477689999999987599999999999979999
Q ss_pred HHHHH
Q ss_conf 98425
Q gi|254780215|r 252 KLFSK 256 (262)
Q Consensus 252 ~~f~~ 256 (262)
+.||.
T Consensus 361 k~lGl 365 (425)
T PRK09357 361 RILGL 365 (425)
T ss_pred HHHCC
T ss_conf 99599
No 28
>PRK07575 dihydroorotase; Provisional
Probab=98.13 E-value=0.00046 Score=47.76 Aligned_cols=244 Identities=14% Similarity=0.154 Sum_probs=116.9
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEE-CCC-----HHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCC
Q ss_conf 1686138887565--2268999999998699899991-679-----877899999998557233--21124454433446
Q gi|254780215|r 2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAI-AIK-----VKDFVPLIKLCQDYPSSI--FCSVGTHPCHAHEE 71 (262)
Q Consensus 2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~-~~~-----~~~~~~~~~l~~~~p~~i--~~a~GiHP~~~~~~ 71 (262)
+||.|+|+..+.+ .+|+..-...|...||..++.+ .++ ........+.+++-. .+ ...+|..|....+.
T Consensus 57 ~ID~HvH~~~pg~~~ked~~tgs~AAa~GGvTtv~~mpnt~P~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~~~el 135 (439)
T PRK07575 57 VIDPQVHFREPGLEHKEDLFTASRACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKC-LVNYGFFIGATPDNLPDL 135 (439)
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC-EECCCEEEECCCCCHHHH
T ss_conf 8976525589987522047665899984987899965788877554899999999860167-233423541158568999
Q ss_pred -----------------------CHHHHHHHHHHCCCCCCCEE----------------CCCCCCCCCCCCCCHHHHHHH
Q ss_conf -----------------------78899885310013332100----------------446775533221110246789
Q gi|254780215|r 72 -----------------------NEVLVDELVCLASHPRVVAI----------------GETGLDRYHNAHTIEEQKVVF 112 (262)
Q Consensus 72 -----------------------~~~~~~~l~~l~~~~~~~aI----------------GEiGLD~~~~~~~~e~Q~~vF 112 (262)
....++.+. ......+++ |..+...+-...+.+......
T Consensus 136 ~~~~~~~g~k~f~~~~~~~~~~~~~~~l~~i~--~~~~~~i~~H~Ed~~~i~~~~~~~~g~~~~~~~~~~~~~~~e~~ai 213 (439)
T PRK07575 136 LTANPTCGIKIFMGSSHGPLLVDDEAALERIF--AEGRRLIAVHAEDQARIRARRELFAGITDPAIHSQIQDEEAALLAT 213 (439)
T ss_pred HHHCCCCCEEEEECCCCCCEECCHHHHHHHHH--HHCCCEEEEECCCHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHH
T ss_conf 97422374678612577862036599999999--7479718983466579997788747988856705558899999999
Q ss_pred HHHHHHHHHCCCCCEE-ECHHHHHHHHHHHHHHHHCCC-CCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHH
Q ss_conf 9998766420442033-000233357999853100036-75331121464023443210352020233221133322333
Q gi|254780215|r 113 LRHIEASRITGIPLVI-HSRSADDDMAAILQEEMKKGP-FPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRA 190 (262)
Q Consensus 113 ~~ql~lA~e~~~pv~i-H~r~a~~~~l~iL~~~~~~~~-~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e 190 (262)
.+-+++|+.++.|+-| |.-. .+.++++++...... .-+..|...-+.+. +.+.|.++-++|.+--+. ....
T Consensus 214 ~~~~~la~~~~~~~hi~hiSs--~~s~~~i~~ak~~~Vt~ev~phhL~l~~~~---~~~~~~~~k~~PPLRs~~--d~~a 286 (439)
T PRK07575 214 RLALKLSKKYQRRLHILHLST--GDEAELLRQDKPAWVTAEVTPQHLLLNTDA---YAKIGSLAQMNPPLRSPE--DNEV 286 (439)
T ss_pred HHHHHHHHHHCCEEEEEECCC--HHHHHHHHHHCCCCCEEEECHHHHHCCHHH---HCCCCCEEEECCCCCCHH--HHHH
T ss_conf 999999998498189995174--899999876435881112321021068657---444684599889999979--9999
Q ss_pred HHHCCCCCCE-EEEEC-CCCCCCCCCCCCCCCH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3210566717-98307-8667877768875882-------44999999999872899899999999999998425
Q gi|254780215|r 191 IARGIPMDRV-LVETD-SPYIVPVSCQGKRNEP-------AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 191 ~v~~iPldri-LlETD-sP~l~p~~~r~~~n~P-------~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
+.+.+--.-| .+-|| +|+-......+-.+.| .+++.++..+-+ ..++++++.+.+..|--++||-
T Consensus 287 L~~~l~~G~Id~i~sDH~P~~~~~K~~~~~~a~~G~~g~e~~lpl~~~~~~~-~~i~l~~~v~~~s~nPAkilgl 360 (439)
T PRK07575 287 LWQALLDGVIDFIATDHAPHTLEEKAQPYPNSPSGMPGVETSLPLMLTAAMA-GKCTVAQVVRWMSTAVARAYGI 360 (439)
T ss_pred HHHHHHCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHCHHHHHCC
T ss_conf 9988608976899949998897882479876776732188899999999982-8802999999972354986497
No 29
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=98.12 E-value=0.00066 Score=46.69 Aligned_cols=213 Identities=12% Similarity=0.060 Sum_probs=115.7
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHC---CCCCCCEECCCCC
Q ss_conf 999986998999916798778999999985572332112445443344678899885---3100---1333210044677
Q gi|254780215|r 23 MRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDEL---VCLA---SHPRVVAIGETGL 96 (262)
Q Consensus 23 ~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l---~~l~---~~~~~~aIGEiGL 96 (262)
.++.++|++.++......+...++ +.+.+-..+.++|.......+.......+. .+.. .++++. ++ +|.
T Consensus 104 ~e~l~~G~Tt~~D~~~~~~~~~~a---~~~~GiR~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-~~p 178 (419)
T PRK08393 104 LEMARSGTTTFVDMYFHMEEVAKA---TLEVGLRGYLGYGMVDLEDPEKTEKEIKETEKLYEFITKLNSPLVN-FV-LAP 178 (419)
T ss_pred HHHHHCCCEEEEEECCCHHHHHHH---HHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE-EE-EEC
T ss_conf 999868976999860549999999---9970980797541167898266777799999999998646898536-99-957
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHH-----------HHHHHHHCCCCCCCCEECCCCHHHHH
Q ss_conf 5533221110246789999876642044203300023335799-----------98531000367533112146402344
Q gi|254780215|r 97 DRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAA-----------ILQEEMKKGPFPFVIHCFSSSQKLAD 165 (262)
Q Consensus 97 D~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~-----------iL~~~~~~~~~~~i~H~FsG~~~~~~ 165 (262)
..+.....+.+++..++|+++++|+.+|.-....|+-. .|.+...-++.-++.||--=+.+.++
T Consensus 179 -----~~~~~~s~e~l~~~~~~a~~~~~~~~~Hl~E~~~e~~~~~~~~G~~p~~~l~~~GlL~~~~i~~H~~~l~~~d~~ 253 (419)
T PRK08393 179 -----HAPYTCSLACLKWVSKKANEWNKLVTIHLSETMAEIGQIREKYGKSPVVLLDDVGLLNEKLIAAHGVWLSSEDIR 253 (419)
T ss_pred -----CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEECCCCCCCHHHHH
T ss_conf -----876759999999999999975991897402768899999987288889998750667875353245537879999
Q ss_pred HHHCCCCEEECCCCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHC---
Q ss_conf 321035202023322113332---23333210566717983078667877768875882449999---999998728---
Q gi|254780215|r 166 ICLELGGYISFTGMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNT---AKALAKEKD--- 236 (262)
Q Consensus 166 ~~l~~g~y~S~~g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~---~~~iA~i~~--- 236 (262)
.+.+.|..++.+|.....-.. .++++++. -=++-|=||+.- .|.+..+... +..+.+...
T Consensus 254 lla~~g~~v~~cP~Sn~~lg~g~~p~~~~~~~--Gv~v~LGTD~~~---------~n~~~dm~~emr~a~l~~~~~~~~~ 322 (419)
T PRK08393 254 MLASAGVTVAHCPASNMKLGSGVFPLRKALDA--GVNVALGTDGAA---------SNNTLDMLREMRLASLLQKVHHLDP 322 (419)
T ss_pred HHHHCCCCEEECCCHHHHCCCCCCCHHHHHHC--CCCEEEECCCCC---------CCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99984993787723386617888779999847--997589678777---------7886899999999999978745898
Q ss_pred --CCHHHHHHHHHHHHHHHHHH
Q ss_conf --99899999999999998425
Q gi|254780215|r 237 --VSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 237 --~~~eei~~~~~~N~~~~f~~ 256 (262)
++.+++.+..+.|.-+.+|.
T Consensus 323 ~~~~~~~vl~maT~~gA~alg~ 344 (419)
T PRK08393 323 AIVKSEEIFRMATVNGAKALGL 344 (419)
T ss_pred CCCCHHHHHHHHHHHHHHHHCC
T ss_conf 8789999999999999998589
No 30
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=98.12 E-value=0.0012 Score=45.09 Aligned_cols=234 Identities=15% Similarity=0.166 Sum_probs=124.3
Q ss_pred EEEEECCCCC-HHHH--------CCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHHCCCC-CCCCCCCC---CC
Q ss_conf 1686138887-5652--------2689999999986998999916--7987789999999855723-32112445---44
Q gi|254780215|r 2 LIDTHCHLLL-PDFD--------EDRHDVIMRAHQANVLKMIAIA--IKVKDFVPLIKLCQDYPSS-IFCSVGTH---PC 66 (262)
Q Consensus 2 ~iD~H~HL~~-~~~~--------~d~~~~i~~a~~~gv~~~i~~~--~~~~~~~~~~~l~~~~p~~-i~~a~GiH---P~ 66 (262)
|||.|+|=.. ..|. +.+..+.+...+.|+..++... .+.+...++++..+.+.+. --..+|+| |+
T Consensus 55 fIDihihG~~G~~f~d~~~~~t~e~l~~~~~~~~~~GvTs~lpT~iT~~~e~i~~~l~~~~~~~~~~~~~~lGiHlEGPf 134 (381)
T PRK11170 55 FIDLQLNGCGGVQFNDTAEAISVETLEIMQKANLKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQALGLHLEGPY 134 (381)
T ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 98873078888476788644569999999998771687899356568999999999999999975177655689752585
Q ss_pred CCC------------CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE-ECHHH
Q ss_conf 334------------46788998853100133321004467755332211102467899998766420442033-00023
Q gi|254780215|r 67 HAH------------EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVI-HSRSA 133 (262)
Q Consensus 67 ~~~------------~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~i-H~r~a 133 (262)
... ..+.+.++.+ ......+.+ .+..| |. .. . +.++...+.+..+++ ||--.
T Consensus 135 is~~k~Gah~~~~i~~p~~e~~~~l---~~~~~~i~~--------vTlAP-E~-~~-~-e~i~~l~~~GI~vs~GHS~A~ 199 (381)
T PRK11170 135 LNLVKKGTHNPEFIRKPDAEMVDFL---CENADVITK--------VTLAP-EM-VD-A-EVISKLVKAGIVVSAGHSNAT 199 (381)
T ss_pred CCCCCCCCCCHHHCCCCCHHHHHHH---HHCCCCEEE--------EEECC-CC-CC-H-HHHHHHHHCCCEEEEECCCCC
T ss_conf 6855578899788379899999999---851697579--------99788-88-88-8-999999988998988558899
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEECCCCHHHHH-------HHHCC-CCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 33579998531000367533112146402344-------32103-52020233221133322333321056671798307
Q gi|254780215|r 134 DDDMAAILQEEMKKGPFPFVIHCFSSSQKLAD-------ICLEL-GGYISFTGMITFPKYDALRAIARGIPMDRVLVETD 205 (262)
Q Consensus 134 ~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~-------~~l~~-g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETD 205 (262)
++++.+-+.. + .+.+-|.|+|=...-. ..++. +.|.++=..-..-...-++-+.|..+ ||+.+-||
T Consensus 200 y~~~~~A~~~----G-a~~~THlfNaM~~l~hRepG~vga~l~~~~~~~elI~DG~Hv~p~~~~l~~~~kg-~~~~lVTD 273 (381)
T PRK11170 200 YKEAKAGFRA----G-ITFATHLYNAMPYITGREPGVVGAILDEPDVYCGIIADGLHVDYANIRNAKRLKG-DKLCLVTD 273 (381)
T ss_pred HHHHHHHHHC----C-CCEEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCC-CCEEEEEC
T ss_conf 9999999986----9-9861148768899788998889999748984478860467089999999998578-83899968
Q ss_pred CCCCC---CCCCC--CC---------C-------CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 86678---77768--87---------5-------88244999999999872899899999999999998425
Q gi|254780215|r 206 SPYIV---PVSCQ--GK---------R-------NEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 206 sP~l~---p~~~r--~~---------~-------n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
|=..+ +..|+ |+ + ..-..+...++.+-+.-+++.++..+....|--|++|.
T Consensus 274 am~a~G~~~g~y~lgg~~v~v~~g~~~~~~GtLAGS~ltm~~~vrnlv~~~g~~l~eAv~mas~nPA~~lGl 345 (381)
T PRK11170 274 ATAPAGANIEQFIFAGKTIYYRDGLCVDENGTLSGSALTMIEAVRNLVEHVGIALDEALRMATLYPARAIGV 345 (381)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCEEECCCCCEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 876668999851127857998799898899924201246999999999984999999999999999998099
No 31
>PRK06189 allantoinase; Provisional
Probab=98.11 E-value=0.0012 Score=44.91 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=42.3
Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHCCCCCCE-EEEEC-CCCCCCCCC--------CCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 03520202332211333223333210566717-98307-866787776--------887588244999999999872899
Q gi|254780215|r 169 ELGGYISFTGMITFPKYDALRAIARGIPMDRV-LVETD-SPYIVPVSC--------QGKRNEPAYVVNTAKALAKEKDVS 238 (262)
Q Consensus 169 ~~g~y~S~~g~i~~~~~~~~~e~v~~iPldri-LlETD-sP~l~p~~~--------r~~~n~P~~i~~~~~~iA~i~~~~ 238 (262)
+.|..+-++|.+.-+ .....+++.+....| .+-|| +|...-... .|-..-...++...... .-++++
T Consensus 277 ~~~~~~k~~PpLr~~--~~~~~L~~~l~~g~id~i~sDh~p~~~~~k~~~~~~~~~~G~~g~e~~l~~l~~~~-~~~~l~ 353 (433)
T PRK06189 277 RIGAVAKCAPPLRDR--QEVEELWDGLMAGHIDTVSSDHSPSLPDLKTEDDFFEVWGGISGGQSTLLVMLTEG-HERGLP 353 (433)
T ss_pred HCCCCEEECCCCCCH--HHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCHHHCCCCCCCHHHHHHHHHHHH-HHCCCC
T ss_conf 169623877888997--89999998761696469973899999778447775542477763566899999999-866999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999998425
Q gi|254780215|r 239 YEDLMEETTKNALKLFSK 256 (262)
Q Consensus 239 ~eei~~~~~~N~~~~f~~ 256 (262)
++++.+.+..|.-++||.
T Consensus 354 l~~~v~~~s~nPA~~~gL 371 (433)
T PRK06189 354 LEQIARLLATAPAKRFGL 371 (433)
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999997889998298
No 32
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=98.10 E-value=0.00014 Score=51.20 Aligned_cols=227 Identities=17% Similarity=0.143 Sum_probs=135.0
Q ss_pred HHHHCCCCEEEEECCCH--HHHHHHHHHHHHCCCCCCCCCCCC-----CCCCCCCC-HHHHHHH----HHHCCCC--CCC
Q ss_conf 99986998999916798--778999999985572332112445-----44334467-8899885----3100133--321
Q gi|254780215|r 24 RAHQANVLKMIAIAIKV--KDFVPLIKLCQDYPSSIFCSVGTH-----PCHAHEEN-EVLVDEL----VCLASHP--RVV 89 (262)
Q Consensus 24 ~a~~~gv~~~i~~~~~~--~~~~~~~~l~~~~p~~i~~a~GiH-----P~~~~~~~-~~~~~~l----~~l~~~~--~~~ 89 (262)
+....|+..+|-++..- .+-.+..+.++.-.-+|..+-|+| |.+.+... ++..+.+ +.-+... +.-
T Consensus 56 ~~~a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p~~~~~~~i~~~ae~~v~ei~~Gi~gT~ikAG 135 (316)
T COG1735 56 RLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAATGFYKAAFHPEYFALRPIEELAEFVVKEIEEGIAGTGIKAG 135 (316)
T ss_pred HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99974897686077645474889999999971985897045331343516775078999999999998703467763351
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH--HHHHHHHHHHHHHCCCCCCCC-EEC-CC-CHHHH
Q ss_conf 00446775533221110246789999876642044203300023--335799985310003675331-121-46-40234
Q gi|254780215|r 90 AIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA--DDDMAAILQEEMKKGPFPFVI-HCF-SS-SQKLA 164 (262)
Q Consensus 90 aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a--~~~~l~iL~~~~~~~~~~~i~-H~F-sG-~~~~~ 164 (262)
-|||+|- +...++.| +++|+.--..+++.+.|+++|+-.. .-|.+++|.+.. ..+.++++ |+= +. +....
T Consensus 136 iIk~~~~--~~~iTp~E--ek~lrAaA~A~~~Tg~Pi~tHt~~gt~g~eq~~il~~eg-vdl~~v~igH~d~n~dd~~y~ 210 (316)
T COG1735 136 IIKEAGG--SPAITPLE--EKSLRAAARAHKETGAPISTHTPAGTMGLEQLRILAEEG-VDLRKVSIGHMDPNTDDVYYQ 210 (316)
T ss_pred EEEECCC--CCCCCHHH--HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC-CCHHHEEEECCCCCCCHHHHH
T ss_conf 4664257--66679899--999999999864118971773440030199999999729-986673673258999739999
Q ss_pred HHHHCCCCEEECCC--C-CCHHHHHH---HHHHHHCCCCCCEEEE-------ECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 43210352020233--2-21133322---3333210566717983-------0786678777688758824499999999
Q gi|254780215|r 165 DICLELGGYISFTG--M-ITFPKYDA---LRAIARGIPMDRVLVE-------TDSPYIVPVSCQGKRNEPAYVVNTAKAL 231 (262)
Q Consensus 165 ~~~l~~g~y~S~~g--~-i~~~~~~~---~~e~v~~iPldriLlE-------TDsP~l~p~~~r~~~n~P~~i~~~~~~i 231 (262)
+++.++|.|++|-+ . ..|+..+. +-+.+..==.|+|++- +|-| ..-.+.+...+.+.+|....---
T Consensus 211 ~~l~~~Ga~l~fD~iG~d~y~pd~~r~~~~~~l~~~gy~d~i~ls~d~~~~~~~~~-~~~~~~~~~~~g~~~I~~~fIP~ 289 (316)
T COG1735 211 KKLADRGAFLEFDRIGKDKYYPDEDRIAPLLELVARGYADLILLSHDDICLSDDVF-LKSMLKANGGWGYGYILNDFIPR 289 (316)
T ss_pred HHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHH-HHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99984585687324574232757776515999998667665000333233310477-87665405886614206756799
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9872899899999999999998425
Q gi|254780215|r 232 AKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 232 A~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
.+-+|++.+.+...+.+|-.|+|..
T Consensus 290 Lk~~Gvde~~i~~mlvdNP~r~f~~ 314 (316)
T COG1735 290 LKRHGVDEETIDTMLVDNPARLFTA 314 (316)
T ss_pred HHHCCCCHHHHHHHHHHCHHHHHCC
T ss_conf 9874998999999986198988355
No 33
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=98.05 E-value=0.00075 Score=46.32 Aligned_cols=211 Identities=14% Similarity=0.085 Sum_probs=111.8
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCC-CEECCCCC
Q ss_conf 9999869989999167987789999999855723---3211244544334467889988531001--3332-10044677
Q gi|254780215|r 23 MRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSS---IFCSVGTHPCHAHEENEVLVDELVCLAS--HPRV-VAIGETGL 96 (262)
Q Consensus 23 ~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~---i~~a~GiHP~~~~~~~~~~~~~l~~l~~--~~~~-~aIGEiGL 96 (262)
.++.++|++.+...+....... + + +.-+-. .+..+|.+|.......+...+.+.+... .+++ .+| +.
T Consensus 82 ~e~l~~G~Ttv~d~~~~~~~~~-~--~-~~~glr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~p 154 (381)
T cd01312 82 RQMLESGTTSIGAISSDGSLLP-A--L-ASSGLRGVFFNEVIGSNPSAIDFKGETFLERFKRSKSFESQLFIPAI---SP 154 (381)
T ss_pred HHHHHCCCCEEEECCCCHHHHH-H--H-HHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE---EC
T ss_conf 9999859616651246574899-9--9-97699679985144899002112389999999998614699567999---66
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHH-----------------------------HHHHHHHHHHC
Q ss_conf 5533221110246789999876642044203300023335-----------------------------79998531000
Q gi|254780215|r 97 DRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDD-----------------------------MAAILQEEMKK 147 (262)
Q Consensus 97 D~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~-----------------------------~l~iL~~~~~~ 147 (262)
- .+...-.+.+++-.++|+++++|+.+|+-....| .++.|.+...-
T Consensus 155 ~-----~~~~~s~e~~~~~~~~a~~~~~~~~~HlaE~~~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~pv~~l~~~G~L 229 (381)
T cd01312 155 H-----APYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLGGL 229 (381)
T ss_pred C-----CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCC
T ss_conf 8-----88875999999999999853991776025878899999985063135666641000112578989999983998
Q ss_pred CCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 367533112146402344321035202023322113332---23333210566717983078667877768875882449
Q gi|254780215|r 148 GPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYV 224 (262)
Q Consensus 148 ~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i 224 (262)
++.-.+.||=--+.+.++.+.+.|..++.+|.....-.. .++++++. -=++-|=||++-- |...++
T Consensus 230 ~~~~~~aH~~~l~~~di~~la~~g~~v~~cP~Sn~~lg~G~~pi~~~~~~--Gv~v~LGTDg~~~---------n~~~d~ 298 (381)
T cd01312 230 GTRVSFVHCVYANLEEAEILASRGASIALCPRSNRLLNGGKLDVSELKKA--GIPVSLGTDGLSS---------NISLSL 298 (381)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCEEEECHHHHHHHCCCCCCHHHHHHC--CCEEEEECCCCCC---------CCCCCH
T ss_conf 99879995258998999999976985887767788746897369999978--8909994899877---------886239
Q ss_pred HHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999872-----899899999999999998425
Q gi|254780215|r 225 VNTAKALAKEK-----DVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 225 ~~~~~~iA~i~-----~~~~eei~~~~~~N~~~~f~~ 256 (262)
....+...... ..+..++.+..+.|.-|.+|.
T Consensus 299 ~~~mr~~~~~~~~~~~~~~~~~~l~~aT~~gA~aLgl 335 (381)
T cd01312 299 LDELRALLDLHPEEDLLELASELLLMATLGGARALGL 335 (381)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9999999997245899889999999999999999588
No 34
>PRK10027 cryptic adenine deaminase; Provisional
Probab=98.04 E-value=0.00044 Score=47.91 Aligned_cols=233 Identities=13% Similarity=0.147 Sum_probs=137.1
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCCCCCCC-CCCCCC---CCC
Q ss_conf 168613888756522689999999986998999916------7987789999999855723321124-454433---446
Q gi|254780215|r 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYPSSIFCSVG-THPCHA---HEE 71 (262)
Q Consensus 2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p~~i~~a~G-iHP~~~---~~~ 71 (262)
|||+|+|+.+.- -...+..+.+...|.+.+++=. ...+..+..++.++.-|-.+|..+. +-|.-. ...
T Consensus 86 ~ID~H~HIESsm--ltP~efA~~vlp~GTTtvv~DpHEiaNV~G~~Gi~~ml~~~~~~pl~~~~~~pScVPat~~~E~~G 163 (588)
T PRK10027 86 FIDAHLHIESSM--MTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCDVNG 163 (588)
T ss_pred CCCCCCCCCCCC--CCHHHHHHHHHCCCCEEEECCCHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 024740560423--299999999873587699728789987438899999998502077405754565688888543577
Q ss_pred CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 78899885310013332100446775533221110246789999876642044203300023335799985310003675
Q gi|254780215|r 72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFP 151 (262)
Q Consensus 72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~ 151 (262)
..-..+.+..+++.+++++.||+ +||-.-. ........+ |+.+ .++++-=|+-+.-++.+.-. ..-+..
T Consensus 164 a~~~~~~~~~~l~~~~V~gLgEv-Mn~pgV~---~gd~~~l~k-i~~~--~~~~idGHaPglsg~~L~ay---~aaGi~- 232 (588)
T PRK10027 164 ASFTLEQMLAWRDHPQVTGLAEM-MDYPGVI---SGQNALLDK-LDAF--RHLTLDGHCPGLGGKELNAY---IAAGIE- 232 (588)
T ss_pred CCCCHHHHHHHHCCCCCCEEEEE-CCCCCEE---CCCHHHHHH-HHHC--CCCCCCCCCCCCCHHHHHHH---HHCCCC-
T ss_conf 82799999998638984356751-3776422---598889999-9973--69951367898887889999---861887-
Q ss_pred CCCEECCCCHHHHHHHHCCCCEEECC-CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 33112146402344321035202023-32211333223333210566717983078667877768875882449999999
Q gi|254780215|r 152 FVIHCFSSSQKLADICLELGGYISFT-GMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKA 230 (262)
Q Consensus 152 ~i~H~FsG~~~~~~~~l~~g~y~S~~-g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~ 230 (262)
--|-. -+.+.+.+-+++|+|+.+- |.+. +.-+.+..++...+..|+++=||... |.... +=..+-++++.
T Consensus 233 -sDHE~-~t~eEa~eklr~Gm~v~iRegS~~-~~l~~l~~~i~~~~~~~~~~~TDD~~--p~dl~----~~Ghid~~vr~ 303 (588)
T PRK10027 233 -NCHES-YQLEEGRRKLQLGMSLMIREGSAA-RNLNALAPLINEFNSPQCMLCTDDRN--PWEIA----HEGHIDALIRR 303 (588)
T ss_pred -CCCCC-CCHHHHHHHHHCCCEEEECCCCCH-HHHHHHHHHHHCCCCCCEEEECCCCC--HHHHH----HCCCHHHHHHH
T ss_conf -32211-779999999968997986278742-54999998862368655379849999--78998----66879999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99872899899999999999998425
Q gi|254780215|r 231 LAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 231 iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
.-+.-+.+++...+-.+-|.-+-|+.
T Consensus 304 AI~~gg~p~~~Ai~mATlN~A~~y~L 329 (588)
T PRK10027 304 LIEQHNVPLHVAYRVASWSTARHFGL 329 (588)
T ss_pred HHHHCCCCHHHHHHHHHCCHHHHCCC
T ss_conf 99974999899998620259987498
No 35
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=98.04 E-value=0.0016 Score=44.15 Aligned_cols=138 Identities=18% Similarity=0.171 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHH--HHHHHHHHHHHHHHC----CCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCH
Q ss_conf 678999987664204420330002--333579998531000----36753311214640234432103520202332211
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRS--ADDDMAAILQEEMKK----GPFPFVIHCFSSSQKLADICLELGGYISFTGMITF 182 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~----~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~ 182 (262)
.+-|.+.++.|.+++.|+.+|+.+ +.+.+++.+.+.... .....+.||-.-+.+.++++.++|...++.+....
T Consensus 294 ~e~~~~~~~~a~~~g~~v~~Ha~gd~~~~~~l~~~e~~~~~~~~~~~r~~i~H~~~~~~~~~~~~~~~g~~~~~~p~~~~ 373 (479)
T cd01300 294 PEELEELVRAADEAGLQVAIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKLGVIASVQPNHLY 373 (479)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHCCCCHHHHHHHHHCCCEEEECHHHHH
T ss_conf 99999999999983983678523627999999999999986688777503300113799999999973975998537764
Q ss_pred HHH-------------H---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH-HHH--------HHHHCC
Q ss_conf 333-------------2---233332105667179830786678777688758824499999-999--------987289
Q gi|254780215|r 183 PKY-------------D---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTA-KAL--------AKEKDV 237 (262)
Q Consensus 183 ~~~-------------~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~-~~i--------A~i~~~ 237 (262)
... . .++++.+ -. =++-+=||+|.... .|....+.+ ... ..-.++
T Consensus 374 ~~~~~~~~~~~g~~~~~~~~p~~~l~~-aG-v~v~lgtD~~~~~~--------~~~~~~~~av~~~~~~~~~~~~~~~~l 443 (479)
T cd01300 374 SDGDAAEDRRLGEERAKRSYPFRSLLD-AG-VPVALGSDAPVAPP--------DPLLGIWAAVTRKTPGGGVLGNPEERL 443 (479)
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHH-CC-CEEEEECCCCCCCC--------CHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 341676650106878752379999998-89-95998279999887--------889999999845685677465845799
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 9899999999999998425
Q gi|254780215|r 238 SYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 238 ~~eei~~~~~~N~~~~f~~ 256 (262)
+.++..+..+.|.-+.+|.
T Consensus 444 t~~eaL~~aT~~~A~~lg~ 462 (479)
T cd01300 444 SLEEALRAYTIGAAYAIGE 462 (479)
T ss_pred CHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999687
No 36
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=98.02 E-value=0.0018 Score=43.81 Aligned_cols=138 Identities=13% Similarity=0.157 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHH-----------HHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf 67899998766420442033000233357-----------9998531000367533112146402344321035202023
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRSADDDM-----------AAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT 177 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~-----------l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~ 177 (262)
.+.+++-.++|+++++|+.+|+-....+. .+.|.+...-++.-.+.||---+.+.++.+.+.|..++.+
T Consensus 217 ~~ll~~~~~~A~~~~~~~~~H~~E~~~e~~~~~~~~G~~pv~~l~~~G~L~~~~~~~H~~~l~~~di~~la~~g~~v~~~ 296 (456)
T PRK08203 217 RELMRESAALARRLGVRLHTHLAETVDEIAFCLEKFGMRPVDYLEDLGWLGPDVWLAHCVHLDDAEIARLARTGTGVAHC 296 (456)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEC
T ss_conf 99999999999867993797026764689999998498789999982887888167512249999999999849957878
Q ss_pred CCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHH----CCCHHHHHHHHHH
Q ss_conf 322113332---23333210566717983078667877768875882449--99999999872----8998999999999
Q gi|254780215|r 178 GMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYV--VNTAKALAKEK----DVSYEDLMEETTK 248 (262)
Q Consensus 178 g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i--~~~~~~iA~i~----~~~~eei~~~~~~ 248 (262)
|.....-.. .++++.+. -=++-+=||++-.. +.+.+. .+.+..+++.+ .++.+++.+-.+.
T Consensus 297 P~Sn~~l~~g~~p~~~l~~a--Gv~v~lGTDg~~sn--------~~~d~~~emr~a~~~~r~~~~~~~l~~~e~l~~AT~ 366 (456)
T PRK08203 297 PCSNMRLASGIAPVRELRAA--GVPVGLGVDGSASN--------DGSNMIGEARQALLLQRLRYGPDAMTAREALEIATL 366 (456)
T ss_pred CHHHHHCCCCCCCHHHHHHC--CCCEEEECCCCCCC--------CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 21220057788889999878--99689832777668--------975799999999999987469977899999999999
Q ss_pred HHHHHHHH
Q ss_conf 99998425
Q gi|254780215|r 249 NALKLFSK 256 (262)
Q Consensus 249 N~~~~f~~ 256 (262)
|.-+.+|+
T Consensus 367 ~gA~aLg~ 374 (456)
T PRK08203 367 GGARVLGR 374 (456)
T ss_pred HHHHHHCC
T ss_conf 99998199
No 37
>PRK13404 dihydropyrimidinase; Provisional
Probab=97.97 E-value=0.0023 Score=43.10 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 4999999999872899899999999999998425
Q gi|254780215|r 223 YVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 223 ~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
.++.+....-.-..++++++.+.+..|--|+||-
T Consensus 351 ~lp~l~~~~v~~g~lsl~~~v~~~s~nPAki~Gl 384 (476)
T PRK13404 351 RLPLLFSEGVVKGRISLNQFVALTSTNPAKLYGL 384 (476)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 8999989999829986999999998889998398
No 38
>PRK09059 dihydroorotase; Validated
Probab=97.94 E-value=0.0025 Score=42.82 Aligned_cols=237 Identities=15% Similarity=0.152 Sum_probs=104.6
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEEC-CC-----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--
Q ss_conf 1686138887565--22689999999986998999916-79-----87789999999855723321124454433446--
Q gi|254780215|r 2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAIA-IK-----VKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEE-- 71 (262)
Q Consensus 2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~~-~~-----~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~-- 71 (262)
+||+|+|+..+-. .++++.--..|...||..++..- +. ....+...+.++.. ..+.+||+.+-..
T Consensus 62 ~ID~HvH~~~pg~~~~e~~~t~s~AA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~~~ 136 (429)
T PRK09059 62 LVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIMMPDTDPVIDNVALVEFVKRTARDT-----AIVNIHPAAAITKGL 136 (429)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH-----CCCCCCEEEEEECCC
T ss_conf 898862569988544344888999998289079997579988888499999999860321-----553401378852488
Q ss_pred CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-----------------
Q ss_conf 788998853100133321004467755332211102467899998766420442033000233-----------------
Q gi|254780215|r 72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD----------------- 134 (262)
Q Consensus 72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~----------------- 134 (262)
..+.+..+..+. ...+++.. |+.....+ ..++++-++.+++++.|+++||-+..
T Consensus 137 ~~~~l~e~~~l~-~~g~~~f~----~~~~~~~~----~~~l~~~~~~~~~~~~~~~~h~Ed~~l~~~~~~~eg~~~~~~~ 207 (429)
T PRK09059 137 AGEEMTEFGLLR-AAGAVAFT----DGRRSVAN----AQVMRRALTYARDFDAVIVHETEDPDLGGNGVMNEGLFASWLG 207 (429)
T ss_pred CCCHHHHHHHHH-HCCEEEEC----CCCCCCCC----HHHHHHHHHHHHHCCCEEEECCCCHHHHHCHHHCCCCCCCCCC
T ss_conf 722345567898-66906750----48635689----9999999999986698479888898888442432542000138
Q ss_pred -------HHHH---HHHHHHHHCCCCCC-CCEECC-CCHHHHHHHHCCCC-----------------------EEECCCC
Q ss_conf -------3579---99853100036753-311214-64023443210352-----------------------0202332
Q gi|254780215|r 135 -------DDMA---AILQEEMKKGPFPF-VIHCFS-SSQKLADICLELGG-----------------------YISFTGM 179 (262)
Q Consensus 135 -------~~~l---~iL~~~~~~~~~~~-i~H~Fs-G~~~~~~~~l~~g~-----------------------y~S~~g~ 179 (262)
.|.. +.+. .......++ +.|.=+ .+.+.++++.+.|. ++-++|.
T Consensus 208 ~~~~P~~~E~~av~r~i~-la~~~~~~vhi~HiSs~~~~~~I~~ak~~G~~vt~ev~phhL~l~~~~~~~~~~~~k~~PP 286 (429)
T PRK09059 208 LSGIPREAEVIPLERDLR-LAALTRGRYHAAQISCAESADALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPP 286 (429)
T ss_pred CCCCCHHHHHHHHHHHHH-HHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCCHHHHCCCCCCCCCCCC
T ss_conf 999998999999999999-9998598589863172677999999997399689996057522885574423672234899
Q ss_pred CCHHHHHHHHHHHHCCCCCCE-EEEEC-CCCCCCCC-------CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 211333223333210566717-98307-86678777-------6887588244999999999872899899999999999
Q gi|254780215|r 180 ITFPKYDALRAIARGIPMDRV-LVETD-SPYIVPVS-------CQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNA 250 (262)
Q Consensus 180 i~~~~~~~~~e~v~~iPldri-LlETD-sP~l~p~~-------~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~ 250 (262)
+--++ .-..+++.+-...| .+-|| +|.-.... ..|-..-...++.....+ .-.+++++.+.+.+..|-
T Consensus 287 LR~~~--d~~~L~~~l~~G~Id~i~SDHaP~~~~~K~~~f~~a~~G~~gve~~lp~~~~~v-~~~~isl~~~v~~~s~nP 363 (429)
T PRK09059 287 LRTEE--DRLAMVEAVASGTIDVIVSDHDPQDVDTKRLPFAEAAAGAIGLETLLAAALRLY-HNGEVPLLRLIEALSTRP 363 (429)
T ss_pred CCCHH--HHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHH
T ss_conf 99989--999999999779970999699999977765986323678560765999999999-859999999999996999
Q ss_pred HHHHHH
Q ss_conf 998425
Q gi|254780215|r 251 LKLFSK 256 (262)
Q Consensus 251 ~~~f~~ 256 (262)
-++||-
T Consensus 364 Aki~Gl 369 (429)
T PRK09059 364 AELFGL 369 (429)
T ss_pred HHHHCC
T ss_conf 999699
No 39
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.91 E-value=0.0022 Score=43.26 Aligned_cols=134 Identities=17% Similarity=0.236 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHH-----------HHHHHHCCCCEEECC
Q ss_conf 678999987664204420330002333579998531000367533112146402-----------344321035202023
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQK-----------LADICLELGGYISFT 177 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~-----------~~~~~l~~g~y~S~~ 177 (262)
.+.+....++|++.+.|+.+|.-......-+++... ..+ .++.|||++... .+....+.|..+.++
T Consensus 148 ~~~~~~a~~~a~~~~~~~~vH~~~~~~~~~~~~~~~-~~~--~~~~h~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~ 224 (338)
T cd01307 148 IKPLELAKKIAKEADLPLMVHIGSPPPILDEVVPLL-RRG--DVLTHCFNGKPNGIVDEEGEVLPLVRRARERGVIFDVG 224 (338)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH-HCC--CEEEEEECCCCCCEECCCHHHHHHHHHHHHCCCEEEEC
T ss_conf 479999999998649957999689826499999986-448--87999744788731367426789999999759689975
Q ss_pred C-C--CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 3-2--2113332233332105667179830786678777688758824-4999999999872899899999999999998
Q gi|254780215|r 178 G-M--ITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPA-YVVNTAKALAKEKDVSYEDLMEETTKNALKL 253 (262)
Q Consensus 178 g-~--i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~-~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~ 253 (262)
. . ..+..+ +..+. ..+---.+.||.+.. + ..+-|. .+....+.+-. .|++.+++.+.++.|.-++
T Consensus 225 ~~~~~~~~~~~---~~~~~-~g~~~~~i~~d~~~~----~--~~~~~~~~~~~~~~~~~~-~Glsl~~~v~~~T~npA~~ 293 (338)
T cd01307 225 HGTASFSFRVA---RAAIA-AGLLPDTISSDIHGR----N--RTNGPVYALATTLSKLLA-LGMPLEEVIEAVTANPARM 293 (338)
T ss_pred CCCCCCCHHHH---HHHHH-CCCCCCEECCCCCCC----C--CCCCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
T ss_conf 77776687999---99985-599885752676655----6--778540122778999998-4998999999998999998
Q ss_pred HHH
Q ss_conf 425
Q gi|254780215|r 254 FSK 256 (262)
Q Consensus 254 f~~ 256 (262)
||.
T Consensus 294 lGl 296 (338)
T cd01307 294 LGL 296 (338)
T ss_pred HCC
T ss_conf 199
No 40
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=97.91 E-value=0.0028 Score=42.56 Aligned_cols=140 Identities=19% Similarity=0.169 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH-----------HHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf 678999987664204420330002333579998-----------531000367533112146402344321035202023
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAIL-----------QEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT 177 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL-----------~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~ 177 (262)
.+.+.+.+++|.+.+.|+.+|+-....++..+. .+.......-.+.||.--+.+.++.+.+.|..++..
T Consensus 193 ~~~~~~~~~~a~~~~~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~H~~~~~~~~~~~l~~~~~~~~~~ 272 (411)
T cd01298 193 DELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRPVEYLEELGLLGPDVVLAHCVWLTDEEIELLAETGTGVAHN 272 (411)
T ss_pred HHHHHHHHHHHHHCCCEEEEEHHCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHCCCEEEEC
T ss_conf 99999999999975994998422459999999999598699999873656876441046732366999998559705546
Q ss_pred CCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHH
Q ss_conf 32211333---223333210566717983078667877768875882449999999998-----7289989999999999
Q gi|254780215|r 178 GMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAK-----EKDVSYEDLMEETTKN 249 (262)
Q Consensus 178 g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~-----i~~~~~eei~~~~~~N 249 (262)
+.-.++-+ ..++++.+. -=++.+-||+|...+. . .+....+....+.+ -.+++.+++.+..+.|
T Consensus 273 p~~~~~l~~~~~~~~~l~~~--Gv~v~igTD~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~s~~eal~~~T~n 344 (411)
T cd01298 273 PASNMKLASGIAPVPEMLEA--GVNVGLGTDGAASNNN-----L-DMFEEMRLAALLQKLAHGDPTALPAEEALEMATIG 344 (411)
T ss_pred CCCCCCCCCCCCHHHHHHHC--CCCEEEECCCCCCCCC-----C-CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 64100134578539999875--9957995688988997-----4-68999999999999752677789999999999999
Q ss_pred HHHHHHH
Q ss_conf 9998425
Q gi|254780215|r 250 ALKLFSK 256 (262)
Q Consensus 250 ~~~~f~~ 256 (262)
.-++||.
T Consensus 345 ~A~~lgl 351 (411)
T cd01298 345 GAKALGL 351 (411)
T ss_pred HHHHHCC
T ss_conf 9999498
No 41
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=97.90 E-value=0.003 Score=42.31 Aligned_cols=237 Identities=15% Similarity=0.205 Sum_probs=111.3
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEE-CCCHH--HHHHHHHH----HHHCC-CCCCCCCCCCCCCCCCCCH
Q ss_conf 16861388875652268999999998699899991-67987--78999999----98557-2332112445443344678
Q gi|254780215|r 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAI-AIKVK--DFVPLIKL----CQDYP-SSIFCSVGTHPCHAHEENE 73 (262)
Q Consensus 2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~-~~~~~--~~~~~~~l----~~~~p-~~i~~a~GiHP~~~~~~~~ 73 (262)
+||.|+||-. .+...-...+...|+..++++ .|+|. +...++++ ++.-+ ..+.+..++.- ......
T Consensus 6 ~iD~HVHlRe----g~~~~~~~~a~a~G~t~v~~MPNT~Ppi~~~~~~~~y~~~i~~~~~~~~~~~~~~~~l--t~~~~~ 79 (335)
T cd01294 6 PDDMHLHLRD----GAMLKLVLPYTARGFSRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMTLYL--TENTTP 79 (335)
T ss_pred CCEEEEECCC----CHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEE--CCCCCH
T ss_conf 8661443789----6258889999837786999899999998999999999999997388983657888860--589999
Q ss_pred HHHHHHHHHCCCCCCCEE-----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH---------HHHHHHHH
Q ss_conf 899885310013332100-----4467755332211102467899998766420442033000---------23335799
Q gi|254780215|r 74 VLVDELVCLASHPRVVAI-----GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR---------SADDDMAA 139 (262)
Q Consensus 74 ~~~~~l~~l~~~~~~~aI-----GEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r---------~a~~~~l~ 139 (262)
+. +.+......+.|| |-++-+ .+. . .....+.+-++.+.++++|+++||- +++...+.
T Consensus 80 ~e---l~~~~~~~~v~giK~y~~gattns--~~G--v-~~~~~~~~~~e~~~~~~~~l~~H~E~~~~~~~~~~~E~~~i~ 151 (335)
T cd01294 80 EE---LREAKKKGGIRGVKLYPAGATTNS--QGG--V-TDLEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIP 151 (335)
T ss_pred HH---HHHHHHCCCCCEEEECCCCCCCCC--CCC--C-CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 99---997665278554662146860046--557--6-558999999999986699677747658875660367887678
Q ss_pred HHHHHHHC-CCCCCCC-EECC-CCHHHHHHHHCC-C-----CEEEC----------------CCCCCHHH-HHHHHHHHH
Q ss_conf 98531000-3675331-1214-640234432103-5-----20202----------------33221133-322333321
Q gi|254780215|r 140 ILQEEMKK-GPFPFVI-HCFS-SSQKLADICLEL-G-----GYISF----------------TGMITFPK-YDALRAIAR 193 (262)
Q Consensus 140 iL~~~~~~-~~~~~i~-H~Fs-G~~~~~~~~l~~-g-----~y~S~----------------~g~i~~~~-~~~~~e~v~ 193 (262)
.+.....+ ...++++ |.=| .+.+.+++.-.. . -++.+ +|.+-.++ .+.+++.++
T Consensus 152 ~~~~l~~~~~~l~ihi~HIST~~~ve~ik~~~~~VtaEVTPHHL~lt~~d~~~~~~~~~~kcnPplR~~~Dr~AL~~al~ 231 (335)
T cd01294 152 VLEPLAQRFPKLKIVLEHITTADAVEYVKSCNENVAATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAAT 231 (335)
T ss_pred HHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCEEEEEHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 78999986888769998438599999999589970488733215751678744485800032999899899999999997
Q ss_pred CCCCCCEEEEECC-CCCCC-----CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0566717983078-66787-----77688758824499999999987289989999999999999842
Q gi|254780215|r 194 GIPMDRVLVETDS-PYIVP-----VSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 194 ~iPldriLlETDs-P~l~p-----~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~ 255 (262)
. ..-.+.+=||. |-... -+.-|-.+.|..++..++..-+ ..+++.+.+-+..|-.+|||
T Consensus 232 ~-G~id~~iaTDHAPH~~~eKe~~~~~AGi~~~~~al~~l~~~f~~--~~~l~~l~~f~s~n~a~~~g 296 (335)
T cd01294 232 S-GHPKFFLGSDSAPHPKSNKESSCGCAGIFSAPIALPYLAEVFEE--HNALDKLEAFASDNGPNFYG 296 (335)
T ss_pred C-CCCCEEEECCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHC
T ss_conf 4-99848984799998645524889999815788899999999980--48499999998465798809
No 42
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=97.88 E-value=0.0031 Score=42.26 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=57.0
Q ss_pred EEEEECCCCCHH----HHCCHHHHHHHHHHCCCCEEEEECCC------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 168613888756----52268999999998699899991679------87789999999855723321124454433446
Q gi|254780215|r 2 LIDTHCHLLLPD----FDEDRHDVIMRAHQANVLKMIAIAIK------VKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEE 71 (262)
Q Consensus 2 ~iD~H~HL~~~~----~~~d~~~~i~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~ 71 (262)
|||+|+|+..+. ..++...-...|...|++.++..... .+......+.+. ...+.-+|+|.-.. ..
T Consensus 53 fID~H~H~~~~~~~~~~~e~~~~g~~aa~~gGvTtv~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~-~~ 128 (447)
T cd01314 53 GIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKAD---GKSVIDYGFHMIIT-DW 128 (447)
T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHC---CCCEEEEEEEEEEE-CC
T ss_conf 898772578887886450228899999996891699516889999878999999999853---78635554689995-48
Q ss_pred CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH
Q ss_conf 7889988531001333210044677553322111024678999987664204420330002
Q gi|254780215|r 72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS 132 (262)
Q Consensus 72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~ 132 (262)
.....+++..+... .+.++ .+.+.|.. . .. .-...+.+-++.|++++.++.+|+.+
T Consensus 129 ~~~~~~~~~~l~~~-G~~~~-k~~~~~~~-~-~~-~~~~~l~~~~~~a~~~~~~~~~h~e~ 184 (447)
T cd01314 129 TDSVIEELPELVKK-GISSF-KVFMAYKG-L-LM-VDDEELLDVLKRAKELGALVMVHAEN 184 (447)
T ss_pred CHHHHHHHHHHHHC-CCCEE-EEEECCCC-C-CC-CCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 87799999999983-87867-78740379-6-23-58799999999998639979992588
No 43
>PRK09237 dihydroorotase; Provisional
Probab=97.88 E-value=0.00071 Score=46.49 Aligned_cols=230 Identities=17% Similarity=0.256 Sum_probs=106.6
Q ss_pred EEEEECCCCC--HHHHCCHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHC-CCCCCC-----CCCCCCCC-CCCC
Q ss_conf 1686138887--565226899999999869989999167-987789999999855-723321-----12445443-3446
Q gi|254780215|r 2 LIDTHCHLLL--PDFDEDRHDVIMRAHQANVLKMIAIAI-KVKDFVPLIKLCQDY-PSSIFC-----SVGTHPCH-AHEE 71 (262)
Q Consensus 2 ~iD~H~HL~~--~~~~~d~~~~i~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~-p~~i~~-----a~GiHP~~-~~~~ 71 (262)
|||+|+|+.. ..+..+.+. .+...||+.++..+. .+.++.....+.... ...++. ..|+.+.. ..+.
T Consensus 59 ~ID~HvH~~~~~~~~~~~~~~---~a~~~GvTTvvd~g~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~g~~~~~~~~~~ 135 (384)
T PRK09237 59 WIDLHVHVYPGSTIYGDEPDE---VGVKSGVTTVVDAGSAGADNIDDFRELTIEASKTRVLAFLNISRIGLLAQDELANL 135 (384)
T ss_pred EEEECCCCCCCCCCCCCCHHH---HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCH
T ss_conf 827233888888766768668---78755851786069998553899999985421441787631100046467553433
Q ss_pred CH-HHHHHHHHHCCCCCCCEECCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH---HHHHHHHHHHHHH
Q ss_conf 78-899885310013332100446775533-221110246789999876642044203300023---3357999853100
Q gi|254780215|r 72 NE-VLVDELVCLASHPRVVAIGETGLDRYH-NAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA---DDDMAAILQEEMK 146 (262)
Q Consensus 72 ~~-~~~~~l~~l~~~~~~~aIGEiGLD~~~-~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a---~~~~l~iL~~~~~ 146 (262)
.. ............+..+ +| +--.. .....+.....++...+++.+.++|+.+|+-.. .+++.+.++
T Consensus 136 ~~~~~~~~~~~~~~~~~~v-~g---~k~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~vH~~~~~~~~~~~~~~~~---- 207 (384)
T PRK09237 136 RDIDADAVAEAVEKNPDFI-VG---IKARMSKSVVGDNGITPLELAKEIARENNLPLMVHIGNNPPDLDEVVELLR---- 207 (384)
T ss_pred HHCCHHHHHHHHHHCCCCE-EE---EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH----
T ss_conf 2269899999998671556-76---777521563365544899999999987599679982897233999999874----
Q ss_pred CCCCCCCCEECCCCH-----------HHHHHHHCCCCEEECC---CCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCC
Q ss_conf 036753311214640-----------2344321035202023---3221133322333321-056671798307866787
Q gi|254780215|r 147 KGPFPFVIHCFSSSQ-----------KLADICLELGGYISFT---GMITFPKYDALRAIAR-GIPMDRVLVETDSPYIVP 211 (262)
Q Consensus 147 ~~~~~~i~H~FsG~~-----------~~~~~~l~~g~y~S~~---g~i~~~~~~~~~e~v~-~iPldriLlETDsP~l~p 211 (262)
.+ ..+-|||++.. +.+....+.|..+.++ ....|+.+. ..++ -+..+ .+.||...
T Consensus 208 ~g--~~~~H~~~~~~~~~~~~~~~~~~~i~~a~~~G~~~~vghg~~~~~~~~a~---~~~~~G~~p~--~i~tD~~~--- 277 (384)
T PRK09237 208 PG--DILTHCFNGKPNGILTEDGELRPSVRRALERGVRLDVGHGTASFSFKVAR---AAIAAGILPD--TISTDIYC--- 277 (384)
T ss_pred CC--CEEEEEECCCCCCEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH---HHHHCCCCCC--EECCCCCC---
T ss_conf 69--88999704778841146512889999999749789982687656899999---9986698663--64156565---
Q ss_pred CCCCCCCCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7768875882-44999999999872899899999999999998425
Q gi|254780215|r 212 VSCQGKRNEP-AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 212 ~~~r~~~n~P-~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
+...+.| ..+..+...+-. .|++++++.+.++.|.-+.||.
T Consensus 278 ---~~~~~g~~~~l~~~~~~~~~-~Glsl~eav~~~T~nPA~~lGL 319 (384)
T PRK09237 278 ---RNRINGPVYSLATTMSKFLA-LGMPLEEVIAAVTKNAADALKL 319 (384)
T ss_pred ---CCCCCCCEEHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCC
T ss_conf ---56678750019999999998-3999999999997899997199
No 44
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=97.87 E-value=0.0026 Score=42.79 Aligned_cols=137 Identities=20% Similarity=0.179 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHH-----------HHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf 67899998766420442033000233357999-----------8531000367533112146402344321035202023
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAI-----------LQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT 177 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~i-----------L~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~ 177 (262)
.+.+.+..++|.+.+.|+.+|+-....++..+ |.+....++.....||..-+.+.++.+.+.|..++.+
T Consensus 191 ~e~l~~~~~~a~~~~~~~~~H~~e~~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~aH~~~l~~~di~~la~~g~~v~~~ 270 (432)
T PRK06038 191 EEFLSKVKELANKDGLGIHIHVLETEAELNAMKERYGKCSVEYLDDIGFLGPDVLAAHCVWLSDGDIEILAERGVNVSHN 270 (432)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEECEEECCHHHHHHHHHCCCEEEEC
T ss_conf 99999999999866990789732418899999997099889999862787865102040507879999998539879988
Q ss_pred CCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH---HHHHHHHHHH-----CCCHHHHHHHH
Q ss_conf 32211333---2233332105667179830786678777688758824499---9999999872-----89989999999
Q gi|254780215|r 178 GMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVV---NTAKALAKEK-----DVSYEDLMEET 246 (262)
Q Consensus 178 g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~---~~~~~iA~i~-----~~~~eei~~~~ 246 (262)
|...+.-. ..++++++. . =++-+-||++-. |...++. +.+..+.+.. .++.+++.+..
T Consensus 271 P~sn~~l~~g~~p~~~~~~~-G-v~v~lgtDg~~~---------~~~~d~~~em~~a~~~~~~~~~~~~~l~~~~~l~~a 339 (432)
T PRK06038 271 PSSNMKLASGIAPVYKMLEK-G-VNVSLGTDGCAS---------NNNLDMFEEMKTAALLQKVNTMNPTALPARQVLEMA 339 (432)
T ss_pred CHHHHCCCCCCCCHHHHHHC-C-CCEEEECCCCCC---------CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 01220057788679999868-9-978884687666---------885559999999999998845898768999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998425
Q gi|254780215|r 247 TKNALKLFSK 256 (262)
Q Consensus 247 ~~N~~~~f~~ 256 (262)
+.|.-|.+|.
T Consensus 340 T~ngA~aLg~ 349 (432)
T PRK06038 340 TVNGAKALGI 349 (432)
T ss_pred HHHHHHHHCC
T ss_conf 9999999688
No 45
>PRK08418 chlorohydrolase; Provisional
Probab=97.85 E-value=0.0015 Score=44.43 Aligned_cols=212 Identities=14% Similarity=0.145 Sum_probs=106.7
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHC--CCCCCCEECCCCCC
Q ss_conf 99998699899991679877899999998557233---21124454433446788998853100--13332100446775
Q gi|254780215|r 23 MRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSI---FCSVGTHPCHAHEENEVLVDELVCLA--SHPRVVAIGETGLD 97 (262)
Q Consensus 23 ~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i---~~a~GiHP~~~~~~~~~~~~~l~~l~--~~~~~~aIGEiGLD 97 (262)
.++.++|+..+..++....+ .+.+.+-+-.. ...+|-.|..+.+......+.+.... ..+++. .-+++.
T Consensus 109 ~eml~sGtTt~~~~~~~~~~----~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h 182 (407)
T PRK08418 109 NKMLKSGVGTIGAISSFGID----LEICAKSPLRVVFFNEILGSNASMVDELLADFLARFKNSKKFKSDKFI--PAIAIH 182 (407)
T ss_pred HHHHHCCCCCCCHHHCCHHH----HHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE--EEEECC
T ss_conf 99997298661403235878----999996499399986240788567778899999999987524688457--998678
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHH----------HHHHHHHHHH---------------CCCCCC
Q ss_conf 533221110246789999876642044203300023335----------7999853100---------------036753
Q gi|254780215|r 98 RYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDD----------MAAILQEEMK---------------KGPFPF 152 (262)
Q Consensus 98 ~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~----------~l~iL~~~~~---------------~~~~~~ 152 (262)
.+.-...+.+++-.++|++++.|+.+|.-....| +.+.+.++.. .+....
T Consensus 183 -----~~~t~s~~~l~~~~~~A~~~~~~i~~H~~Es~~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~i 257 (407)
T PRK08418 183 -----SPYSVHPILAKKALDLAKKSNLLVSTHFLESKAEREWLEESKGWFKKFFERFLKHPKPLYTPKDFLDLFKGLRTL 257 (407)
T ss_pred -----CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEE
T ss_conf -----888778999999999986369859999789889999999723707678987356864225767788614678839
Q ss_pred CCEECCCCHHHHHHHHCCCCEEECCCCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 311214640234432103520202332211333---22333321056671798307866787776887588244999999
Q gi|254780215|r 153 VIHCFSSSQKLADICLELGGYISFTGMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAK 229 (262)
Q Consensus 153 i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~ 229 (262)
..||---+.+.++.+.+.|..++..|.....-+ ..++++++. -=++-|=||++-. |...++....+
T Consensus 258 ~aH~v~l~d~ei~lla~~g~~VahcP~SN~~lg~G~~pv~~~~~~--Gv~V~LGTDg~~s---------n~~~dm~~emr 326 (407)
T PRK08418 258 FTHCVYASEEELEKIKSLGHSIIHCPFSNRLLSNKALDLEKIKKA--GIPLSIATDGLSS---------NISLSLLDELR 326 (407)
T ss_pred EEEECCCCHHHHHHHHHCCCEEEECHHHHHHCCCCCCCHHHHHHC--CCCEEEECCCCCC---------CCCCCHHHHHH
T ss_conf 997477899999999971996999878898626899889999868--9968996899877---------89738999999
Q ss_pred HHHH-HHCCC----HHHHHHHHHHHHHHHHHH
Q ss_conf 9998-72899----899999999999998425
Q gi|254780215|r 230 ALAK-EKDVS----YEDLMEETTKNALKLFSK 256 (262)
Q Consensus 230 ~iA~-i~~~~----~eei~~~~~~N~~~~f~~ 256 (262)
...- -++.+ .+++.+-.+.|.-|.+|.
T Consensus 327 ~a~~~~~~~~~~~~a~~~l~maT~~GA~aLgl 358 (407)
T PRK08418 327 AALLTHKNMPLLELAKILLLSATKYGAKALGL 358 (407)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99996058998741999999999999999689
No 46
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=97.84 E-value=0.0021 Score=43.38 Aligned_cols=229 Identities=17% Similarity=0.195 Sum_probs=143.1
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEE------CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------
Q ss_conf 16861388875652268999999998699899991------679877899999998557233211244544334------
Q gi|254780215|r 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAI------AIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAH------ 69 (262)
Q Consensus 2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~------~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~------ 69 (262)
|||+|.|+.+.-+ ...+...-....|++.+++= -...+.....++-+++.|-.+|..+ |..++
T Consensus 79 fID~H~HIESSm~--tP~~FA~~Vlp~GtTtvV~DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~~~~---pScVPat~~Et 153 (584)
T COG1001 79 FIDAHLHIESSML--TPSEFARAVLPHGTTTVVSDPHEIANVLGEDGIRFMLDEAKETPLKVYVML---PSCVPATPFET 153 (584)
T ss_pred EECCCEECCCCCC--CHHHHHHHHHCCCCEEEEECCHHHHHHCCHHHHHHHHHHHHHCCEEEEEEC---CCCCCCCCCCC
T ss_conf 1103210100366--899999886517855896172898761368899999987752976899966---66766775346
Q ss_pred CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC
Q ss_conf 46788998853100133321004467755332211102467899998766420442033000233357999853100036
Q gi|254780215|r 70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGP 149 (262)
Q Consensus 70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~ 149 (262)
....-..+.+++++..|+++++||+= || . .-.+...+++ .-|+.|++.+|||-=|+.+.-+..+.- |...+.
T Consensus 154 ~Ga~l~a~~i~e~~~~p~Vigl~E~M-n~-p--gVi~~D~~~l-~kl~a~~~~~k~VdGHapgl~g~~Ln~---Y~aaGi 225 (584)
T COG1001 154 SGAELTAEDIKELLEHPEVIGLGEMM-NF-P--GVIEGDPDML-AKLEAARKAGKPVDGHAPGLSGKELNA---YIAAGI 225 (584)
T ss_pred CCCEECHHHHHHHHHCCCCCCHHHHC-CC-C--HHCCCCHHHH-HHHHHHHHCCCEECCCCCCCCHHHHHH---HHHCCC
T ss_conf 78460399999986287714235532-77-1--0215988899-999999874985346489998078888---985388
Q ss_pred CCCCCEECCCCHHHHHHHHCCCCEEECC-CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCCCCHHHHHH
Q ss_conf 7533112146402344321035202023-32211333223333210566717983078667877--76887588244999
Q gi|254780215|r 150 FPFVIHCFSSSQKLADICLELGGYISFT-GMITFPKYDALRAIARGIPMDRVLVETDSPYIVPV--SCQGKRNEPAYVVN 226 (262)
Q Consensus 150 ~~~i~H~FsG~~~~~~~~l~~g~y~S~~-g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~--~~r~~~n~P~~i~~ 226 (262)
. --|=. -+.+.+.+-+++|+|+.+- |.+.. .-..+-.++...+..|+++=||-- .|. -.. ..+-.
T Consensus 226 ~--tDHE~-~t~EEa~~klr~Gm~i~iReGS~a~-dl~~l~~~i~e~~~~~~~lcTDD~--~p~dl~~e------Ghld~ 293 (584)
T COG1001 226 S--TDHES-TTAEEALEKLRLGMKIMIREGSAAK-DLAALLPAITELGSRRVMLCTDDR--HPDDLLEE------GHLDR 293 (584)
T ss_pred C--CCCCC-CCHHHHHHHHHCCCEEEEECCCHHH-HHHHHHHHHHHCCCCEEEEECCCC--CHHHHHHC------CCHHH
T ss_conf 8--67654-9999999999578689998574155-099999997614886189987999--85676652------77999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999872899899999999999998425
Q gi|254780215|r 227 TAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 227 ~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
+++..=+ .|++.....+..+-|.-+-||.
T Consensus 294 ~vR~Ai~-~Gv~p~~a~qmAtiN~A~~~gl 322 (584)
T COG1001 294 LVRRAIE-EGVDPLDAYQMATINPAEHYGL 322 (584)
T ss_pred HHHHHHH-CCCCHHHHHHHHHCCHHHHCCC
T ss_conf 9999998-2999899998875079987197
No 47
>PRK09356 imidazolonepropionase; Validated
Probab=97.84 E-value=0.00086 Score=45.94 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=80.5
Q ss_pred HHHHHHHHHHCCCCCEEECHHHHH-HHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHH-HHH---
Q ss_conf 999987664204420330002333-579998531000367533112146402344321035202023322113-332---
Q gi|254780215|r 112 FLRHIEASRITGIPLVIHSRSADD-DMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFP-KYD--- 186 (262)
Q Consensus 112 F~~ql~lA~e~~~pv~iH~r~a~~-~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~-~~~--- 186 (262)
.++.++.|.++++|+.+|+..... .-.++..++ ....+-||---+.+.++.+.+.|...+..|...+. +..
T Consensus 223 ~~~~~~~a~~~g~~v~~Ha~~~~~~~~~~l~~~~----g~~~~~H~~~~~~e~i~~la~~g~~~~~~P~s~~~l~~~~~~ 298 (401)
T PRK09356 223 SERVFEAAKALGLPVKLHAEQLSNLGGAELAARY----GALSADHLEYLDEAGIAAMAEAGTVAVLLPGAFYFLRETQYP 298 (401)
T ss_pred HHHHHHHHHHCCCCEEEHHHHHCCCCHHHHHHHH----CCCCHHHHHHCCHHHHHHHHHCCCEEEECCCHHHHHCCCCCC
T ss_conf 9999999998699727717644445479999980----997415887618999999986497079885047674577664
Q ss_pred HHHHHHHCCCCCCEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 23333210566717983078-667877768875882449999999998728998999999999999984256
Q gi|254780215|r 187 ALRAIARGIPMDRVLVETDS-PYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKI 257 (262)
Q Consensus 187 ~~~e~v~~iPldriLlETDs-P~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~ 257 (262)
.++++.+. -=++-+=||+ |...| -.++.......+...+++.+++.+..+.|.-|.+|.-
T Consensus 299 ~~~~l~~a--Gv~v~lGTD~~pg~~~---------~~~~~~~~~~a~~~~glt~~eaL~~aT~~~Aralg~~ 359 (401)
T PRK09356 299 PARLLRDA--GVPVALATDFNPGTSP---------TTSLLLMMNMACTLFRLTPEEALAGVTRNAARALGRQ 359 (401)
T ss_pred HHHHHHHC--CCCEEEEECCCCCCCC---------CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 49999978--9965997469876683---------2119999999999749999999999999999997899
No 48
>PRK08323 dihydropyrimidinase; Validated
Probab=97.79 E-value=0.0046 Score=41.11 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999872899899999999999998425
Q gi|254780215|r 224 VVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 224 i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
++......-.-..++++++.+.+..|--++||-
T Consensus 347 l~~l~~~~V~~g~lsl~~~v~~~s~nPA~~lGL 379 (463)
T PRK08323 347 MPLLFSEGVMTGRITLNRFVELTSTNPAKIFGL 379 (463)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 999999999839999999999986629998397
No 49
>PRK06380 metal-dependent hydrolase; Provisional
Probab=97.78 E-value=0.0046 Score=41.08 Aligned_cols=137 Identities=13% Similarity=0.148 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHH-----------HHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf 678999987664204420330002333579998531-----------000367533112146402344321035202023
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEE-----------MKKGPFPFVIHCFSSSQKLADICLELGGYISFT 177 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~-----------~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~ 177 (262)
.+.+++-.++|++++.|+-+|.-....|+....+.+ ..-++.-...||---+.+.++.+.+.|..++++
T Consensus 185 ~e~~~~~~~lA~~~~~~~~~H~~E~~~e~~~~~~~~G~~pv~~l~~~glL~~~~~~~H~~~~~~~e~~~la~~g~~v~~~ 264 (418)
T PRK06380 185 DETYMRALDLAEKYNTIMHMHLSETRKEVYDTVKKYGERPIEHLNKIGFLSDRVIAAHCVWATYHEIKLLSKNGVNVSWN 264 (418)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCEEEC
T ss_conf 99999999999972983786400206789999999599889999854888887166555328989999999759836878
Q ss_pred CCCCHHHHH----HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---H-----CCCHHHHHHH
Q ss_conf 322113332----233332105667179830786678777688758824499999999987---2-----8998999999
Q gi|254780215|r 178 GMITFPKYD----ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKE---K-----DVSYEDLMEE 245 (262)
Q Consensus 178 g~i~~~~~~----~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i---~-----~~~~eei~~~ 245 (262)
|...++-+. .++++++. . =++-+=||++- .|...++....+..+-. . .++.+++.+-
T Consensus 265 P~sn~~l~~gg~~pi~~~~~~-G-v~v~lGTD~~~---------s~~~~dm~~~mr~~~l~~~~~~~d~~~~~~~~~l~m 333 (418)
T PRK06380 265 SVSNFKLATGGNPPIPEMLNN-N-VNVTIGTDSNG---------SNNSLDMFQAMKFSALSVKNERWDASIIKSQDILDM 333 (418)
T ss_pred CHHHHHCCCCCCCCHHHHHHC-C-CCEEEECCCCC---------CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 346765057888769999976-9-90899168655---------565189999999999998763479876799999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999998425
Q gi|254780215|r 246 TTKNALKLFSK 256 (262)
Q Consensus 246 ~~~N~~~~f~~ 256 (262)
.+.|.-|.++.
T Consensus 334 AT~~gAkaLg~ 344 (418)
T PRK06380 334 ATLNAASALNL 344 (418)
T ss_pred HHHHHHHHHCC
T ss_conf 99999998499
No 50
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=97.75 E-value=0.0036 Score=41.83 Aligned_cols=140 Identities=13% Similarity=0.113 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHHH-----------HHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf 678999987664204420330002333579-----------998531000367533112146402344321035202023
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRSADDDMA-----------AILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT 177 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l-----------~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~ 177 (262)
.+.+++-.++|++++.|+.+|.-....++- +.|.+....++.-.+.||.--+.+.++.+.+.|.+++.+
T Consensus 198 ~e~l~~~~~~A~~~~~~~~~H~~e~~~e~~~~~~~~g~~~i~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~ 277 (445)
T PRK07228 198 EELLREVRDLAREYGVRIHTHASENQGEIELVEQETGMRNIHYLDHVGLTGEDLILAHCIWLDEEERDILAETGTHVTHC 277 (445)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHCCEEEEC
T ss_conf 99999999999974982898545874699999998599889999854777898513012448889999999839837978
Q ss_pred CCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHH
Q ss_conf 32211333---22333321056671798307866787776887588244999999999872-----89989999999999
Q gi|254780215|r 178 GMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEK-----DVSYEDLMEETTKN 249 (262)
Q Consensus 178 g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~-----~~~~eei~~~~~~N 249 (262)
|...+.-. ..++++++. --++-+=||++..... ..+-.-.+.+..+.+.. .++.+++.+..+.|
T Consensus 278 P~sn~~l~~g~~~~~~l~~~--Gv~v~lGTDg~~~n~~------~d~~~emr~a~l~~~~~~~~~~~l~~~~~l~~aTi~ 349 (445)
T PRK07228 278 PSSNLKLASGIAPIPDLLER--GINVSLGADGAPCNNN------LDAFTEMRQAALIQKPDLLGPTAMPARQVFEMATLG 349 (445)
T ss_pred CHHHHHCCCCCCCHHHHHHC--CCEEEEECCCCCCCCC------HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 57765246788579999976--9908996788755786------249999999999999864598768999999998688
Q ss_pred HHHHHHH
Q ss_conf 9998425
Q gi|254780215|r 250 ALKLFSK 256 (262)
Q Consensus 250 ~~~~f~~ 256 (262)
.-+.+|.
T Consensus 350 gA~alG~ 356 (445)
T PRK07228 350 GAKAMGM 356 (445)
T ss_pred HHHHCCC
T ss_conf 9998198
No 51
>PRK08044 allantoinase; Provisional
Probab=97.75 E-value=0.0053 Score=40.70 Aligned_cols=240 Identities=15% Similarity=0.134 Sum_probs=105.2
Q ss_pred EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEEC--CCH-----HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 168613888756--522689999999986998999916--798-----77899999998557233211244544334467
Q gi|254780215|r 2 LIDTHCHLLLPD--FDEDRHDVIMRAHQANVLKMIAIA--IKV-----KDFVPLIKLCQDYPSSIFCSVGTHPCHAHEEN 72 (262)
Q Consensus 2 ~iD~H~HL~~~~--~~~d~~~~i~~a~~~gv~~~i~~~--~~~-----~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~ 72 (262)
+||.|+|+..+. ..++++.--..|...||+.++..- +.+ +......+.++. ..+.-++.|.-.. ...
T Consensus 55 ~ID~HvH~~~pg~~~~e~~~t~s~AA~~GGvTtv~~mP~n~~p~~~~~~~~~~~~~~~~~---~~~vd~~~~~g~~-~~~ 130 (449)
T PRK08044 55 MVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRESIELKFDAAKG---KLTIDAAQLGGLV-SYN 130 (449)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHC---CCCCCEEEEECCC-CCC
T ss_conf 897750569998643104888889997468557997878999875529999999998636---7543289981204-787
Q ss_pred HHHHHHHHHHCCCCCCCEE-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-----------
Q ss_conf 8899885310013332100-------4467755332211102467899998766420442033000233-----------
Q gi|254780215|r 73 EVLVDELVCLASHPRVVAI-------GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD----------- 134 (262)
Q Consensus 73 ~~~~~~l~~l~~~~~~~aI-------GEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~----------- 134 (262)
.+.+.++.+. .++++ |.-|++- +. ...+-..+.+-++-+.+++.|+++||.+..
T Consensus 131 ~~~i~~l~~~----g~~~~k~f~~~~g~~~i~~--~~--~~~~d~~l~~~~~~~~~~g~~v~~H~E~~~i~~~~~~~~~~ 202 (449)
T PRK08044 131 LDRLHELDEV----GVVGFKCFVATCGDRGIDN--DF--RDVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEAKR 202 (449)
T ss_pred HHHHHHHHHC----CCCEEEEEEECCCCCCCCC--CC--CCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 7889988762----6652567630357632247--76--66798999999999985399699979987999999999987
Q ss_pred ----------------HHHH---HHHHHHHHCCCCCCC-CEECC-CCHHHHHHHHCCC----------------------
Q ss_conf ----------------3579---998531000367533-11214-6402344321035----------------------
Q gi|254780215|r 135 ----------------DDMA---AILQEEMKKGPFPFV-IHCFS-SSQKLADICLELG---------------------- 171 (262)
Q Consensus 135 ----------------~~~l---~iL~~~~~~~~~~~i-~H~Fs-G~~~~~~~~l~~g---------------------- 171 (262)
.|+. +++ ........+++ .|-=+ .+.+.++++.+.|
T Consensus 203 ~g~~~~~~~~~~rP~~aE~~av~r~~-~la~~~g~~~hi~HiSs~~~~~~I~~ak~~G~~vt~Ev~ph~L~l~~~~~~~~ 281 (449)
T PRK08044 203 EGRVTAHDYVASRPVFTEVEAIRRVL-YLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEI 281 (449)
T ss_pred CCCCCHHHCCCCCCHHHHHHHHHHHH-HHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEECHHHHCCCHHHHHHC
T ss_conf 69965334447798899999999999-98887198388445354778999999997699840120355561899898426
Q ss_pred -CEEECCCCCCHHHHHHHHHHHHCCCCCCE-EEEEC-CCCCCCCC---C----CCCCCCHHHHHHHHHHHHHHHCCCHHH
Q ss_conf -20202332211333223333210566717-98307-86678777---6----887588244999999999872899899
Q gi|254780215|r 172 -GYISFTGMITFPKYDALRAIARGIPMDRV-LVETD-SPYIVPVS---C----QGKRNEPAYVVNTAKALAKEKDVSYED 241 (262)
Q Consensus 172 -~y~S~~g~i~~~~~~~~~e~v~~iPldri-LlETD-sP~l~p~~---~----r~~~n~P~~i~~~~~~iA~i~~~~~ee 241 (262)
.++=++|.+--+ .....+++.+-...| .+=|| +|.-.... + .|-..--.+++.....+-.-++++++.
T Consensus 282 ~~~~k~~PPLR~~--~d~~aL~~al~~G~Id~i~SDHaP~~~~~K~~~~~~a~~Gi~g~et~l~ll~~~~v~~~~lsl~~ 359 (449)
T PRK08044 282 GTLAKCSPPIRDQ--ENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPM 359 (449)
T ss_pred CCEEEECCCCCCH--HHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 9548888999997--89999999985799509985999999789188766488986515447999999999749989999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999998425
Q gi|254780215|r 242 LMEETTKNALKLFSK 256 (262)
Q Consensus 242 i~~~~~~N~~~~f~~ 256 (262)
+.+.+..|--++||-
T Consensus 360 ~v~~~s~nPAki~gl 374 (449)
T PRK08044 360 FGKLMATNAADIFGL 374 (449)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999981639998598
No 52
>PRK08204 hypothetical protein; Provisional
Probab=97.74 E-value=0.004 Score=41.51 Aligned_cols=139 Identities=16% Similarity=0.081 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEECH----HHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH
Q ss_conf 67899998766420442033000----23335799985310003675331121464023443210352020233221133
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSR----SADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPK 184 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r----~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~ 184 (262)
.+.+...+++|++++.|+.+|.- ......++.+.+...-++.-.+.||---+.+.++.+.+.|..++++|......
T Consensus 202 ~e~~~~~~~~a~~~g~~~~~H~~~~~~~~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~e~~~la~~g~~v~~~p~s~~~~ 281 (451)
T PRK08204 202 WEVVRADFRLARELGLPASMHIGFGPWGATPRGVEQLHDAGLLGPDLNIVHCNAISDDELRLLADSGASFSVTPEIEMMM 281 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEECCHHHHHH
T ss_conf 99999999999967994888223664456886899999769878990899512688899999887399679674057652
Q ss_pred H---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH----------------HHHHCCCHHHHHHH
Q ss_conf 3---2233332105667179830786678777688758824499999999----------------98728998999999
Q gi|254780215|r 185 Y---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKAL----------------AKEKDVSYEDLMEE 245 (262)
Q Consensus 185 ~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~i----------------A~i~~~~~eei~~~ 245 (262)
. ...+++++. -=++-+-||++-..+. ....-.+.+-.. ..-.+++.+++.+.
T Consensus 282 ~~g~~~~~~~~~~--Gv~v~lgtD~~~~~~~-------d~~~~~r~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~eal~~ 352 (451)
T PRK08204 282 GHGYPVTGRLLKH--GVRPSLGVDVVTSTGG-------DMFTQMRFALQAERALDNAELLREGIMPPPTLTLSARQVLEW 352 (451)
T ss_pred CCCCCCHHHHHHC--CCCEEEECCCCCCCCC-------CHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 4798609999974--9966664675566783-------799999999986666501145542022255568899999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999998425
Q gi|254780215|r 246 TTKNALKLFSK 256 (262)
Q Consensus 246 ~~~N~~~~f~~ 256 (262)
.+.|.-+.+|.
T Consensus 353 aT~~gA~alG~ 363 (451)
T PRK08204 353 ATIEGARALGL 363 (451)
T ss_pred HHHHHHHHCCC
T ss_conf 99999998099
No 53
>PRK08392 hypothetical protein; Provisional
Probab=97.73 E-value=0.00082 Score=46.07 Aligned_cols=150 Identities=13% Similarity=0.116 Sum_probs=83.3
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECC----CHHHHHH----HHHHHHHCC-------------------C
Q ss_conf 686138887565226899999999869989999167----9877899----999998557-------------------2
Q gi|254780215|r 3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAI----KVKDFVP----LIKLCQDYP-------------------S 55 (262)
Q Consensus 3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~----~~~~~~~----~~~l~~~~p-------------------~ 55 (262)
||.|+|-....-...+++.++.|.+.|.+.+.++-. ......+ ...+.+..+ +
T Consensus 1 iDlHtHT~~Sdg~~ti~E~~~aA~~~Gl~~i~ITDH~~~~~~~~~~~~~~~i~~~~~~~~i~iL~GiE~nIl~g~lD~~~ 80 (215)
T PRK08392 1 MDLHTHTVYSDGIGSVRDNVAWAEKRGLKLLGISDHIHYFTPSKFNRYINEIRRWGEESEIVVLAGIEANITENGPDITD 80 (215)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCH
T ss_conf 96655878446778799999999987994899806999888289999999999854406977999776350489878679
Q ss_pred C-----CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf 3-----32112445443344678899885310013332100446775533221110246789999876642044203300
Q gi|254780215|r 56 S-----IFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS 130 (262)
Q Consensus 56 ~-----i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~ 130 (262)
. =|.-.|+|.|+..+..+...+.+...+.++.+-.||-.|..+-....+. ..-+++.+++|++.|..+-|-+
T Consensus 81 ~~l~~lD~vIasvH~~~~~~~~e~~~~~~~~A~~n~~v~iigHp~~~~~~~~~p~---~~~~~~v~~~a~~~~~~lEIns 157 (215)
T PRK08392 81 DFAKKLDYVIASVHEWFGRDTPHEYIELVKLALMDENVDIIGHFGNSFPWIGYPT---EEEIREVLELAEAYGKAFEISS 157 (215)
T ss_pred HHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCH---HHHHHHHHHHHHHHCCEEECCC
T ss_conf 9998699799998737889988999999999996799889958998767777755---8899999999999698774159
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCC
Q ss_conf 0233357999853100036753311214640234432103520202332
Q gi|254780215|r 131 RSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGM 179 (262)
Q Consensus 131 r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~ 179 (262)
+... .+.+.++.+.+.|..|++|..
T Consensus 158 ~~~~------------------------~~~~~~~~a~~~Gv~i~i~SD 182 (215)
T PRK08392 158 RYKV------------------------PDLEFIRECIKRGIKLTFASD 182 (215)
T ss_pred CCCC------------------------CCHHHHHHHHHCCCEEEEECC
T ss_conf 8889------------------------989999999984996999789
No 54
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=97.68 E-value=0.0061 Score=40.29 Aligned_cols=137 Identities=16% Similarity=0.117 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHH-----------HHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf 67899998766420442033000233357999-----------8531000367533112146402344321035202023
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAI-----------LQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT 177 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~i-----------L~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~ 177 (262)
.+.|++..++|++++.|+.+|+-....+.-.. |.+...-++.-...||--=+.+.++.+.+.|..++.+
T Consensus 202 ~~~l~~~~~~A~~~~~~v~~H~~E~~~e~~~~~~~~G~~pv~~l~~~G~L~~~~~~~H~~~l~~~di~~la~~g~~v~~~ 281 (444)
T PRK09045 202 DENLERIRVLAEQLDAPIHIHLHETAQEIEDSLKQHGQRPLARLDRLGLLGPRLIAVHMTQLTDAEIALLAETGCSVVHC 281 (444)
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCEEEEC
T ss_conf 89999999999866991886013458899999988499889999972689976325544741847999999809979988
Q ss_pred CCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH---HHHHHHHH-----HCCCHHHHHHHH
Q ss_conf 322113332---2333321056671798307866787776887588244999---99999987-----289989999999
Q gi|254780215|r 178 GMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVN---TAKALAKE-----KDVSYEDLMEET 246 (262)
Q Consensus 178 g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~---~~~~iA~i-----~~~~~eei~~~~ 246 (262)
|.....-.. .++++.+ -. =++-+=||++.. |...++.. ++..+++. ..++..++.+..
T Consensus 282 P~sn~~l~~g~~p~~~l~~-~G-v~v~lGtDg~~s---------n~~~d~~~emr~a~~~~r~~~~~~~~l~~~e~l~~a 350 (444)
T PRK09045 282 PESNLKLASGFCPVAKLWR-AG-VNVAIGTDGAAS---------NNDLDLFGEMRTAALLAKAVAGDATALPAHTALRMA 350 (444)
T ss_pred CCCCHHCCCCCCCHHHHHH-CC-CCEEEECCCCCC---------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 2110003678888999987-79-937986798867---------885119999999999999864899889999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998425
Q gi|254780215|r 247 TKNALKLFSK 256 (262)
Q Consensus 247 ~~N~~~~f~~ 256 (262)
+.|.-+..|.
T Consensus 351 T~~gA~aLg~ 360 (444)
T PRK09045 351 TLNGARALGL 360 (444)
T ss_pred HHHHHHHHCC
T ss_conf 9999999589
No 55
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=97.67 E-value=0.0067 Score=40.00 Aligned_cols=217 Identities=14% Similarity=0.112 Sum_probs=95.5
Q ss_pred HHHHHHHCCCCEEEE-----ECCCHHHHHHHHHHHHHCCCCCCC---CCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCEE
Q ss_conf 999999869989999-----167987789999999855723321---12445443344678899885310013-332100
Q gi|254780215|r 21 VIMRAHQANVLKMIA-----IAIKVKDFVPLIKLCQDYPSSIFC---SVGTHPCHAHEENEVLVDELVCLASH-PRVVAI 91 (262)
Q Consensus 21 ~i~~a~~~gv~~~i~-----~~~~~~~~~~~~~l~~~~p~~i~~---a~GiHP~~~~~~~~~~~~~l~~l~~~-~~~~aI 91 (262)
.+.++...|+..+.. .......++...++.+.+.+.+-. ++.-++.+.. ....+.+++.... ..+ +
T Consensus 101 ~~~~~l~~G~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~g~~~--~ 175 (398)
T cd01293 101 ALELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGLLST---PGGEELMREALKMGADV--V 175 (398)
T ss_pred HHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC---HHHHHHHHHHHHHCCCE--E
T ss_conf 999999659618876433145221569999999999846443401364477312466---41899999999824600--6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-------HHHHHHHHHHHHCCCCCCCCEECCCC----
Q ss_conf 4467755332211102467899998766420442033000233-------35799985310003675331121464----
Q gi|254780215|r 92 GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD-------DDMAAILQEEMKKGPFPFVIHCFSSS---- 160 (262)
Q Consensus 92 GEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~-------~~~l~iL~~~~~~~~~~~i~H~FsG~---- 160 (262)
| |+++...... -.+.+++-+++|+++++|+.+|+-... +.+.+.+.+....+ .-.+-||+.-+
T Consensus 176 g--~~~~~~~~~~---~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~g~~~-~~~~~H~~~l~~~~~ 249 (398)
T cd01293 176 G--GIPPAEIDED---GEESLDTLFELAQEHGLDIDLHLDETDDPGSRTLEELAEEAERRGMQG-RVTCSHATALGSLPE 249 (398)
T ss_pred E--ECCCCCCCCC---HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCC-CEEHHHHHHCCCCCH
T ss_conf 4--1266567887---799999999999984998799545644403669999999999829976-455654321537998
Q ss_pred ---HHHHHHHHCCCCEEECCCCCCHHHHH------------HHHHHHHCCCCCCEEEEECCCCCCC-CCCCCCCCCHHHH
Q ss_conf ---02344321035202023322113332------------2333321056671798307866787-7768875882449
Q gi|254780215|r 161 ---QKLADICLELGGYISFTGMITFPKYD------------ALRAIARGIPMDRVLVETDSPYIVP-VSCQGKRNEPAYV 224 (262)
Q Consensus 161 ---~~~~~~~l~~g~y~S~~g~i~~~~~~------------~~~e~v~~iPldriLlETDsP~l~p-~~~r~~~n~P~~i 224 (262)
.+.++.+.+.|..++..|........ .++++.+. -=++.+=||+.. .| .|. +.+ ++
T Consensus 250 ~~~~~~~~~la~~gv~v~~~p~~~~~l~~~~~~~~~~~g~~~v~~l~~a--Gv~v~lGtD~~~-~~~~p~----g~~-~~ 321 (398)
T cd01293 250 AEVSRLADLLAEAGISVVSLPPINLYLQGREDTTPKRRGVTPVKELRAA--GVNVALGSDNVR-DPWYPF----GSG-DM 321 (398)
T ss_pred HHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCCCCCCCCCCHHHHHHC--CCEEEECCCCCC-CCCCCC----CCH-HH
T ss_conf 8999999999873987998750456534432134444588889999977--993996588887-888888----865-49
Q ss_pred HHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHHH
Q ss_conf 99999999872899----899999999999998425
Q gi|254780215|r 225 VNTAKALAKEKDVS----YEDLMEETTKNALKLFSK 256 (262)
Q Consensus 225 ~~~~~~iA~i~~~~----~eei~~~~~~N~~~~f~~ 256 (262)
.......+...+++ ..+..+..+.|.-+.+|.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lGl 357 (398)
T cd01293 322 LEVANLAAHIAQLGTPEDLALALDLITGNAARALGL 357 (398)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999958997778999999993999997199
No 56
>PRK07627 dihydroorotase; Provisional
Probab=97.65 E-value=0.0072 Score=39.82 Aligned_cols=237 Identities=14% Similarity=0.124 Sum_probs=103.8
Q ss_pred EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEEC-CC-----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CC
Q ss_conf 168613888756--522689999999986998999916-79-----877899999998557233211244544334--46
Q gi|254780215|r 2 LIDTHCHLLLPD--FDEDRHDVIMRAHQANVLKMIAIA-IK-----VKDFVPLIKLCQDYPSSIFCSVGTHPCHAH--EE 71 (262)
Q Consensus 2 ~iD~H~HL~~~~--~~~d~~~~i~~a~~~gv~~~i~~~-~~-----~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~--~~ 71 (262)
+||.|+|+..+- +.++++.-...|...||..++... ++ +...+.....++..+.. .++|+.+. ..
T Consensus 57 ~ID~HvH~~~pg~~~~e~~~s~~~AA~~GGvTtv~~~p~t~p~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 131 (425)
T PRK07627 57 LVDLSARLREPGYEYKATLESEMAAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQA-----HVYPLGALTVGL 131 (425)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC-----CEEEECCEECCC
T ss_conf 997775568898541010552789997188789985798888888789999999999855898-----799855434588
Q ss_pred CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-----------------
Q ss_conf 788998853100133321004467755332211102467899998766420442033000233-----------------
Q gi|254780215|r 72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD----------------- 134 (262)
Q Consensus 72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~----------------- 134 (262)
..+.+.++..+... .+++.+.-+. +.. -...+.+-++.|..++.++.+|+-+..
T Consensus 132 ~~~~l~e~~~l~~~-G~~~f~~~~~-------~~~-d~~~l~~~~~~a~~~g~~~~~h~ed~~~~~~~~~~~g~~~~~~g 202 (425)
T PRK07627 132 KGEVLTEMVELTEA-GCVGFSQANV-------PVV-DTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVAASGAVASRLG 202 (425)
T ss_pred CCCHHHHHHHHHHC-CCEEEECCCC-------CCC-CHHHHHHHHHHHCCCCCEEEEECCCHHHHCCCCCCCCCCHHHCC
T ss_conf 82024307889864-8647603663-------357-99999998876403695799715657886187554664033228
Q ss_pred -------HH---HHHHHHHHHHCCCCCC-CCEECC-CCHHHHHHHHCCCCE-----------------------EECCCC
Q ss_conf -------35---7999853100036753-311214-640234432103520-----------------------202332
Q gi|254780215|r 135 -------DD---MAAILQEEMKKGPFPF-VIHCFS-SSQKLADICLELGGY-----------------------ISFTGM 179 (262)
Q Consensus 135 -------~~---~l~iL~~~~~~~~~~~-i~H~Fs-G~~~~~~~~l~~g~y-----------------------~S~~g~ 179 (262)
.| +-+++. .......++ +.|.=+ ++.+.++++...|.. +-++|.
T Consensus 203 l~~~p~~aE~~ai~~~~~-la~~~g~~~hi~Hiss~~~l~~I~~ak~~G~~vt~Et~ph~L~l~~~~~~~~~~~~k~~PP 281 (425)
T PRK07627 203 LSGVPVAAETIALHTIFE-LMRVTGARVHLARLSSAAGLALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPP 281 (425)
T ss_pred CCCCCHHHHHHHHHHHHH-HHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHCCCHHHHCCCCCCEECCCC
T ss_conf 988983440345889999-9987299689970587999999998987799579997175302776785656762432488
Q ss_pred CCHHHHHHHHHHHHCCCCCCE-EEEEC-CCCCCCC---CC----CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 211333223333210566717-98307-8667877---76----887588244999999999872899899999999999
Q gi|254780215|r 180 ITFPKYDALRAIARGIPMDRV-LVETD-SPYIVPV---SC----QGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNA 250 (262)
Q Consensus 180 i~~~~~~~~~e~v~~iPldri-LlETD-sP~l~p~---~~----r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~ 250 (262)
+-.+.. -..+.+.+....| .+-|| +|+-... ++ .|-..-...++...+.+ .-.+++++++.+.+..|-
T Consensus 282 LR~~~d--~eaL~~~l~~G~Id~i~SDH~p~~~~~K~~~~~~~~~G~~G~e~~lpl~l~~~-~~~~lsL~~~v~~~s~nP 358 (425)
T PRK07627 282 LRSQRD--RDAIRAALADGTIDAICSDHTPVDDDEKLLPFAEATPGATGLELLLPLTLKWA-DEARVPLARALARITSAP 358 (425)
T ss_pred CCCHHH--HHHHHHHHHCCCEEEEECCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHH
T ss_conf 797788--99998786469878996488888976765870328797480765999999999-816989999999997999
Q ss_pred HHHHHH
Q ss_conf 998425
Q gi|254780215|r 251 LKLFSK 256 (262)
Q Consensus 251 ~~~f~~ 256 (262)
-++||-
T Consensus 359 Ak~~Gl 364 (425)
T PRK07627 359 ARVLGL 364 (425)
T ss_pred HHHHCC
T ss_conf 999699
No 57
>PRK06886 hypothetical protein; Validated
Probab=97.65 E-value=0.0074 Score=39.73 Aligned_cols=217 Identities=14% Similarity=0.086 Sum_probs=107.2
Q ss_pred HHHHHHCCCCEE---EEE--CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCC
Q ss_conf 999998699899---991--679877899999998557233211244544334467889988531001333210044677
Q gi|254780215|r 22 IMRAHQANVLKM---IAI--AIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGL 96 (262)
Q Consensus 22 i~~a~~~gv~~~---i~~--~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGL 96 (262)
++.+...|+.++ +.+ ......++-++++.+.|.+.+-.-+..-|..--- .+...+.+...... +-.|| |+
T Consensus 75 l~~~ia~Gt~aiRTHVDvDp~~gl~~l~a~~~lre~~~~~idlQivafpq~G~~-~~~~~~~l~~~~~~--vDvVG--Gi 149 (328)
T PRK06886 75 IELMISQGVTAFGTFVDIDPVCEDRAIIAAHKAREVYKSDIILKFANQTLKGVI-EPTAKKWFDIGSEM--VDMIG--GL 149 (328)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC-CCHHHHHHHHHHHH--CCCCC--CC
T ss_conf 999998195315755513654344789999999998627746999567631225-81699999999875--57448--87
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH---HHHHHHHHHH----HHHCCCCCCCCEECCCC---HH----
Q ss_conf 5533221110246789999876642044203300023---3357999853----10003675331121464---02----
Q gi|254780215|r 97 DRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA---DDDMAAILQE----EMKKGPFPFVIHCFSSS---QK---- 162 (262)
Q Consensus 97 D~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a---~~~~l~iL~~----~~~~~~~~~i~H~FsG~---~~---- 162 (262)
.++ +..+.+...+....-+++|+++|+||=+||=.. ....++.|-+ +.-.+ .-.+-||++=. .+
T Consensus 150 P~~-d~~~~~~~~~~ld~lf~lA~~~g~~vD~H~De~~dp~~~~le~la~~t~~~G~~G-RVt~sH~~sL~~~~~~~~~~ 227 (328)
T PRK06886 150 PYR-DELDYGRGLEAMDILLDKAKSLGIMCHVHVDQFNTPKEKETEQLCDKTIEHGMQG-RVVAIHGISIGAHSKEYRYK 227 (328)
T ss_pred CCC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCC-CEEEEEHHHHHCCCHHHHHH
T ss_conf 677-8666101699999999999984997476018999911768999999999957799-77753301464389999999
Q ss_pred HHHHHHCCCCEEECCCCC-C--------HHHH---HHHHHHHHCCCCCCEEEEECC---CCCCCCCCCCCCCCHHHHHHH
Q ss_conf 344321035202023322-1--------1333---223333210566717983078---667877768875882449999
Q gi|254780215|r 163 LADICLELGGYISFTGMI-T--------FPKY---DALRAIARGIPMDRVLVETDS---PYIVPVSCQGKRNEPAYVVNT 227 (262)
Q Consensus 163 ~~~~~l~~g~y~S~~g~i-~--------~~~~---~~~~e~v~~iPldriLlETDs---P~l~p~~~r~~~n~P~~i~~~ 227 (262)
.++.+.+.|.-+--+|.. . +++. ..++++.+. -=++-+=||. ||. |+. -.++..+
T Consensus 228 l~~~la~agi~vis~P~~nl~l~gr~d~~P~~RgvtpV~eL~~~--GV~Va~G~Dni~Dpw~---P~G-----~gDmL~~ 297 (328)
T PRK06886 228 LYEKMRDAQMMMIACPMAWIDSNRKEDLMPFHNALTPADEMIPE--GITVAIGTDNICDYMV---PLC-----EGDMWQE 297 (328)
T ss_pred HHHHHHHCCCCEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHC--CCEEEEECCCCCCCCC---CCC-----CCCHHHH
T ss_conf 99999984996998812575506877878877888889999977--9959981578878886---997-----7649999
Q ss_pred HHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 999998728-9989999999999999842
Q gi|254780215|r 228 AKALAKEKD-VSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 228 ~~~iA~i~~-~~~eei~~~~~~N~~~~f~ 255 (262)
+..++..-. -+.|++.+.++.|..|..|
T Consensus 298 ~~l~~~~~~~~~~e~~~~~~T~n~ak~lg 326 (328)
T PRK06886 298 LSLLAAGCRFPNLEEMVNIASINGRKVLG 326 (328)
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHC
T ss_conf 99999983658899998886032888738
No 58
>PRK01211 dihydroorotase; Provisional
Probab=97.62 E-value=0.0079 Score=39.53 Aligned_cols=231 Identities=14% Similarity=0.183 Sum_probs=111.8
Q ss_pred EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEECC------CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 168613888756--5226899999999869989999167------98778999999985572332112445443344678
Q gi|254780215|r 2 LIDTHCHLLLPD--FDEDRHDVIMRAHQANVLKMIAIAI------KVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE 73 (262)
Q Consensus 2 ~iD~H~HL~~~~--~~~d~~~~i~~a~~~gv~~~i~~~~------~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~ 73 (262)
+||.|+|+..+- ..+++..--..|...|++.++.... +.+.+...++.+++ ..+.-+|+|+....+..
T Consensus 50 ~ID~HvH~rePG~~~kEd~~tgs~AAa~GGvTtv~~mPnt~ppi~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~- 125 (413)
T PRK01211 50 ATDIHVHFRTPGETYKEDFSTGSLSAIFGGTTTVMDMPNNKIPIDDYNAFSDKLGIISR---TSYCDFGLYSMETGDNS- 125 (413)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC---CCEEEEEEEEEECCCCH-
T ss_conf 77996026999943032099999999829918999889999996779999999997404---75467887871237425-
Q ss_pred HHHHHHHHHCCCCCCCEECCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCEEECHHHH------------------
Q ss_conf 8998853100133321004467755332211-102467899998766420442033000233------------------
Q gi|254780215|r 74 VLVDELVCLASHPRVVAIGETGLDRYHNAHT-IEEQKVVFLRHIEASRITGIPLVIHSRSAD------------------ 134 (262)
Q Consensus 74 ~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~-~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~------------------ 134 (262)
.+.. -|.+|+-.|...+. ...-..+....++.+++++.|+++||-+..
T Consensus 126 ----~~~~---------~~~~g~k~f~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~HaEd~~~~~~~~~~~~~~~~~~~~ 192 (413)
T PRK01211 126 ----LIID---------KRSIGLKVYLGGSTNTNGTDVITNEEISKINELNVPVFFHGEDEECLKKHQFEAKNLREHNLS 192 (413)
T ss_pred ----HHHH---------HHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCHHHCCCC
T ss_conf ----5443---------131031441056555564045459999999867992898535878876433045686563155
Q ss_pred ----HHH--HHHHHHHHHCCCCCCCCEECCCCHHHHHHH--------------HCCCCEEECCCCCCHHH-HHHHHHHHH
Q ss_conf ----357--999853100036753311214640234432--------------10352020233221133-322333321
Q gi|254780215|r 135 ----DDM--AAILQEEMKKGPFPFVIHCFSSSQKLADIC--------------LELGGYISFTGMITFPK-YDALRAIAR 193 (262)
Q Consensus 135 ----~~~--l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~--------------l~~g~y~S~~g~i~~~~-~~~~~e~v~ 193 (262)
.++ .+.+..... ..+.+.|-= +.+....+ .+.|.++=++|.+--++ .+.+.+.++
T Consensus 193 rp~~~e~~av~~~~~~~~--~~~~~~h~s--s~e~~~~i~~Et~pHhL~l~de~~~g~~~k~nPPLRs~~d~~aL~~al~ 268 (413)
T PRK01211 193 RPIECEILAAEYVKNLDL--KTKIMAHVS--SPDVIGEFLREVTPHHLLLNDEMPLGSYGKVNPPLRDRSTQSRLLNSYI 268 (413)
T ss_pred CCHHHHHHHHHHHHHHHH--HCCEEEEEE--CHHHHHHHHHEECCEEEECCCCCCCCCCCEECCCCCCHHHHHHHHHHHH
T ss_conf 759999999999998764--338799994--6889877874204504871552016876166899989799999999874
Q ss_pred CCCCCCEEEEEC-CCCCCCCC--CC----CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 056671798307-86678777--68----87588244999999999872899899999999999998425
Q gi|254780215|r 194 GIPMDRVLVETD-SPYIVPVS--CQ----GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 194 ~iPldriLlETD-sP~l~p~~--~r----~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
.=-.|-| =|| +|+..... +. |-..--..++..... ..-..++.+.+.+.+..|-.++||-
T Consensus 269 dG~ID~I--aSDHaPh~~~eK~~f~~a~~G~~GlEt~lpl~l~~-v~~g~l~l~~lv~~~s~nPAki~gl 335 (413)
T PRK01211 269 SGNFDIL--SSDHAPHTENDKTEFEYAKSGIIGVETRIPLMLAL-VSKKILPLDVLYKTAIENPPSIFGI 335 (413)
T ss_pred CCCCCEE--EECCCCCCHHHCCCHHHCCCCCCCCCCHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 3998889--63788989466188645888987614389999999-8748979999999999999999599
No 59
>PRK07213 chlorohydrolase; Provisional
Probab=97.59 E-value=0.0088 Score=39.23 Aligned_cols=135 Identities=13% Similarity=0.050 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHH---------CCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCC
Q ss_conf 7899998766420442033000233357999853100---------0367533112146402344321035202023322
Q gi|254780215|r 110 VVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMK---------KGPFPFVIHCFSSSQKLADICLELGGYISFTGMI 180 (262)
Q Consensus 110 ~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~---------~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i 180 (262)
+.+....++|++.++|+.+|.-....+.-..++.+.. ......+.||---+.+.++.+.+.|..++..|..
T Consensus 181 e~l~~~~~~a~~~~~~~~~H~aE~~~e~~~~~~~~g~~~ve~l~~~g~~~~~lvH~v~l~d~ei~lla~~g~~v~hcP~S 260 (378)
T PRK07213 181 EELKFICKECRKAGKIASIHAAEHKGSVEYSLEKYGITEIERLIDLKFKPDFLVHATHPSSDDLSLLKENNIPVVVCPRA 260 (378)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEECHHH
T ss_conf 99999999999769937996179778999999984998789998579998828983579999999999759957988376
Q ss_pred CHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 11333---22333321056671798307866787776887588244999999999872899899999999999998425
Q gi|254780215|r 181 TFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 181 ~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
...-+ ..++++++. -=++-|=||++- -|.+ ++....+.+.++..++.+++.+-.+.|.-+.+|.
T Consensus 261 N~~L~~G~~pv~~~~~~--Gv~V~LGTD~~~---------sn~~-dm~~em~~~~~~~~~~~~e~L~mAT~~GA~aLg~ 327 (378)
T PRK07213 261 NASFNVGIPPISEMLEY--NIKLGLGTDNFM---------ANSP-SIFKEMDFIYKIYHIDPKEILKMATINGAEILGL 327 (378)
T ss_pred HHHHCCCCCCHHHHHHC--CCCEEEECCCCC---------CCCH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 87634799889999978--995899748886---------6886-5999999999873999999999999999998099
No 60
>PRK12393 amidohydrolase; Provisional
Probab=97.58 E-value=0.009 Score=39.15 Aligned_cols=137 Identities=16% Similarity=0.133 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHH-----------HHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf 67899998766420442033000233357-----------9998531000367533112146402344321035202023
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRSADDDM-----------AAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT 177 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~-----------l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~ 177 (262)
.+.+.+..++|++++.|+.+|.-....++ ++.|.++..-++.-...||--=+.+.++.+.+.|..++.+
T Consensus 219 ~e~l~~~~~~A~~~~~~~~~H~~E~~~e~~~~~~~~g~~pv~~l~~~G~Lg~~~~~aH~v~l~~~ei~lla~~g~~v~h~ 298 (459)
T PRK12393 219 PELLREVARAARGMGLRLHSHLSETVDYVDFCRERYGMSPVQFVAEHDWLGPDVWFAHLVHLDAEEIALLAQTGTGIAHC 298 (459)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEC
T ss_conf 99999999999864991787414435799999988099989999971888876276612268879999999729748976
Q ss_pred CCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH---HHHHHH----CCCHHHHHHHHH
Q ss_conf 322113332---2333321056671798307866787776887588244999999---999872----899899999999
Q gi|254780215|r 178 GMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAK---ALAKEK----DVSYEDLMEETT 247 (262)
Q Consensus 178 g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~---~iA~i~----~~~~eei~~~~~ 247 (262)
|.....-.. .++++.+. . =++-|=||++-. |...++....+ .+.+.. .++.+++.+-.+
T Consensus 299 P~Sn~~lg~G~~p~~~~~~~-G-v~v~LGtDg~~s---------n~~~dm~~~mr~a~l~~r~~~~~~~~~~~~~l~~AT 367 (459)
T PRK12393 299 PQSNARLGSGIAPVLAMAAA-G-VPISLGVDGAAS---------NESASMLSEAHFAWLVHRAEGGASATTVEDVIHWGT 367 (459)
T ss_pred HHHHHHHCCCCCCHHHHHHC-C-CCEEEECCCCCC---------CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 14476616898889999867-9-968996899877---------885249999999999977607987789999999998
Q ss_pred HHHHHHHHH
Q ss_conf 999998425
Q gi|254780215|r 248 KNALKLFSK 256 (262)
Q Consensus 248 ~N~~~~f~~ 256 (262)
.|.-+.+|.
T Consensus 368 ~~gA~aLg~ 376 (459)
T PRK12393 368 AGGAQVLGL 376 (459)
T ss_pred HHHHHHHCC
T ss_conf 888998399
No 61
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=97.57 E-value=0.0092 Score=39.08 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 44999999999872899899999999999998425
Q gi|254780215|r 222 AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 222 ~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
..++......-+-.+++++++.+.++.|.-|+||-
T Consensus 338 ~~l~~~~~~~~~~~~l~le~~v~~~T~nPA~~lgl 372 (447)
T cd01315 338 LGLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGL 372 (447)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 78999999999829999999999997889998498
No 62
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=97.56 E-value=0.0042 Score=41.37 Aligned_cols=130 Identities=18% Similarity=0.112 Sum_probs=81.3
Q ss_pred HHHHHHHHHHCCCCCEEECHHHH-HHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHH---H
Q ss_conf 99998766420442033000233-3579998531000367533112146402344321035202023322113332---2
Q gi|254780215|r 112 FLRHIEASRITGIPLVIHSRSAD-DDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYD---A 187 (262)
Q Consensus 112 F~~ql~lA~e~~~pv~iH~r~a~-~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~---~ 187 (262)
.++.++.|.+.++|+.+|+..-. ....+...+. ....+-||..-+.+.++.+.+.|...++.|...+.-.. .
T Consensus 195 ~~~~~~~a~~~g~~~~~H~~~~~~~~~~~~~~~~----g~~~~~H~~~~~~~~i~~l~~~g~~~~~~P~~~~~l~~~~~~ 270 (371)
T cd01296 195 SRRILEAAKEAGLPVKIHADELSNIGGAELAAEL----GALSADHLEHTSDEGIAALAEAGTVAVLLPGTAFSLRETYPP 270 (371)
T ss_pred HHHHHHHHHHCCCCEEEEHHHHCCCCHHHHHHHC----CCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCC
T ss_conf 9999999998599469863540553189999980----997210788863999999997398089875147765688767
Q ss_pred HHHHHHCCCCCCEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3333210566717983078-66787776887588244999999999872899899999999999998425
Q gi|254780215|r 188 LRAIARGIPMDRVLVETDS-PYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 188 ~~e~v~~iPldriLlETDs-P~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
.+++++. -=++.+=||+ |...+ . .++.......+...+++.++..+..+.|.-+.+|.
T Consensus 271 ~~~l~~a--Gv~v~lGtD~~p~~~~--------~-~~~~~~~~~a~~~~~l~~~eaL~~aT~n~A~~lg~ 329 (371)
T cd01296 271 ARKLIDA--GVPVALGTDFNPGSSP--------T-SSMPLVMHLACRLMRMTPEEALTAATINAAAALGL 329 (371)
T ss_pred HHHHHHC--CCCEEEEECCCCCCCC--------H-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 8999876--9976776479988770--------3-37999999999985999999999999999999589
No 63
>PRK08417 dihydroorotase; Provisional
Probab=97.54 E-value=0.01 Score=38.82 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 44999999999872899899999999999998425
Q gi|254780215|r 222 AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 222 ~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
..++.....+-.-+.++++.+.+.+..|--|+||.
T Consensus 300 ~~lpll~~~~v~~g~isl~~~v~~~s~nPAki~gl 334 (387)
T PRK08417 300 EYFSLCYTKLIKSGFINMSELSRFTSKNPAEFLGL 334 (387)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999869989999999997889999598
No 64
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=97.52 E-value=0.011 Score=38.62 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 4999999999872899899999999999998425
Q gi|254780215|r 223 YVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 223 ~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
.++.+... +.-++++++++.+.++.|.-++||.
T Consensus 336 ~l~~~~~~-~~~~glsl~~av~~~s~nPA~~lGL 368 (442)
T TIGR03178 336 TLPVMWDE-ARQRGLPLEDIARLMATNPAKRFGL 368 (442)
T ss_pred HHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999999-9856877999999997879998598
No 65
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=97.52 E-value=0.011 Score=38.60 Aligned_cols=143 Identities=14% Similarity=0.151 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCE-EECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH
Q ss_conf 0246789999876642044203-300023335799985310003675331121464023443210352020233221133
Q gi|254780215|r 106 EEQKVVFLRHIEASRITGIPLV-IHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPK 184 (262)
Q Consensus 106 e~Q~~vF~~ql~lA~e~~~pv~-iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~ 184 (262)
........+-+.+|+..+-++- .|.-- .+.++++++....-..-+..|...=+.+.. .+.|.++-++|.+--+.
T Consensus 154 ~aE~~av~r~l~la~~~g~~~hi~hvSt--~~~l~~i~~a~~~vt~et~ph~L~l~~~~~---~~~~~~~k~~PPLR~~~ 228 (361)
T cd01318 154 EAAAVATARALKLARRHGARLHICHVST--PEELKLIKKAKPGVTVEVTPHHLFLDVEDY---DRLGTLGKVNPPLRSRE 228 (361)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCC--HHHHHHHHHCCCCCEEEECHHHHCCCHHHH---CCCCCCEEECCCCCCHH
T ss_conf 9999999999999998599689994088--999999997599965885236542781343---15687166359989778
Q ss_pred HHHHHHHHHCCCCCCE-EEEEC-CCCCCCCC---CC----CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3223333210566717-98307-86678777---68----8758824499999999987289989999999999999842
Q gi|254780215|r 185 YDALRAIARGIPMDRV-LVETD-SPYIVPVS---CQ----GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 185 ~~~~~e~v~~iPldri-LlETD-sP~l~p~~---~r----~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~ 255 (262)
. -..+++.+-...| .+-|| +|+-.... +. |-..--..++...+ +..-.+++++++.+.+..|-.++||
T Consensus 229 d--r~aL~~~l~~G~Id~i~SDH~P~~~~~K~~~f~~a~~Gi~g~e~~l~l~~~-lv~~g~l~l~~~v~~~s~nPAki~g 305 (361)
T cd01318 229 D--RKALLQALADGRIDVIASDHAPHTLEEKRKGYPAAPSGIPGVETALPLMLT-LVNKGILSLSRVVRLTSHNPARIFG 305 (361)
T ss_pred H--HHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCCCCEEHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9--999999986599649972898889898368977577875109889999999-9872881499999999688999949
Q ss_pred H
Q ss_conf 5
Q gi|254780215|r 256 K 256 (262)
Q Consensus 256 ~ 256 (262)
.
T Consensus 306 l 306 (361)
T cd01318 306 I 306 (361)
T ss_pred C
T ss_conf 8
No 66
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=97.50 E-value=0.012 Score=38.42 Aligned_cols=221 Identities=13% Similarity=0.066 Sum_probs=116.6
Q ss_pred HHHHHHHCCCCEEEEEC-CCHHHHHHHHHHHHHCCCCCCCCCCCCC----CCCCCCCH--H-HHHHHHHHCCCCCCCEEC
Q ss_conf 99999986998999916-7987789999999855723321124454----43344678--8-998853100133321004
Q gi|254780215|r 21 VIMRAHQANVLKMIAIA-IKVKDFVPLIKLCQDYPSSIFCSVGTHP----CHAHEENE--V-LVDELVCLASHPRVVAIG 92 (262)
Q Consensus 21 ~i~~a~~~gv~~~i~~~-~~~~~~~~~~~l~~~~p~~i~~a~GiHP----~~~~~~~~--~-~~~~l~~l~~~~~~~aIG 92 (262)
.+.++...|+..+..-. ........+.+.+.+.....+.+.++-. .......+ . ..+.+++..... -.
T Consensus 108 ~~~e~l~~G~t~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~ 183 (421)
T COG0402 108 ALLEMLRNGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQDVAFPDPGAETDEELEETEELLREAHGLG----RD 183 (421)
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC----CC
T ss_conf 99999966976897425433255778999999828732763200036778643333444668999999986269----86
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHH-----------HHHHCCCCCCCCEECCCCH
Q ss_conf 46775533221110246789999876642044203300023335799985-----------3100036753311214640
Q gi|254780215|r 93 ETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQ-----------EEMKKGPFPFVIHCFSSSQ 161 (262)
Q Consensus 93 EiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~-----------~~~~~~~~~~i~H~FsG~~ 161 (262)
-+|+.-+...+..+ +.++.-.++|.++|+|+-+|+-...++.-..+. .+....+.-+..||...+.
T Consensus 184 ~~~~~p~~~~~~~~---~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~ 260 (421)
T COG0402 184 VVGLAPHFPYTVSP---ELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSE 260 (421)
T ss_pred EEEECCCCCCCCCH---HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEECCCCCH
T ss_conf 37762777667798---999999999972799379981687327889998750248888864486578749996687998
Q ss_pred HHHHHHHCCCCEEECCCCCCHHHHHH---HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-C
Q ss_conf 23443210352020233221133322---3333210566717983078667877768875882449999999998728-9
Q gi|254780215|r 162 KLADICLELGGYISFTGMITFPKYDA---LRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKD-V 237 (262)
Q Consensus 162 ~~~~~~l~~g~y~S~~g~i~~~~~~~---~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~-~ 237 (262)
+..+...+.|.-++..|.....-+.. .++.++.. =++.+=||+--. .....|..-...+..+.+... .
T Consensus 261 ~e~~~l~~~g~~v~~cP~sN~~L~sG~~p~~~~~~~g--v~v~~gTD~~~~------~~~~d~l~~~~~a~~l~~~~~~~ 332 (421)
T COG0402 261 EELELLAESGASVVHCPRSNLKLGSGIAPVRRLLERG--VNVALGTDGAAS------NNVLDMLREMRTADLLQKLAGGL 332 (421)
T ss_pred HHHHHHHHCCCEEEECHHHHHHCCCCCCCHHHHHHCC--CEEEEEEECCCC------CCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9999998669859988466643477788889998546--828999724676------78635689999999998763456
Q ss_pred CHH----HHHHHHHHHHHHHHHH
Q ss_conf 989----9999999999998425
Q gi|254780215|r 238 SYE----DLMEETTKNALKLFSK 256 (262)
Q Consensus 238 ~~e----ei~~~~~~N~~~~f~~ 256 (262)
... ++.+..+.|.-+.+|+
T Consensus 333 ~~~~~~~~~l~~aT~~gA~alg~ 355 (421)
T COG0402 333 LAAQLPGEALDMATLGGAKALGL 355 (421)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 54310378999982789998089
No 67
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=97.44 E-value=0.014 Score=37.90 Aligned_cols=215 Identities=10% Similarity=0.013 Sum_probs=113.3
Q ss_pred HHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHCCCCCCCCCCC------CCCCCCCCCHHHHHHHHHHCCC-----CCCC
Q ss_conf 99999869989999167-9877899999998557233211244------5443344678899885310013-----3321
Q gi|254780215|r 22 IMRAHQANVLKMIAIAI-KVKDFVPLIKLCQDYPSSIFCSVGT------HPCHAHEENEVLVDELVCLASH-----PRVV 89 (262)
Q Consensus 22 i~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~p~~i~~a~Gi------HP~~~~~~~~~~~~~l~~l~~~-----~~~~ 89 (262)
+.++..+|++.+...++ .+.......+.+...+-. ..+|. .|....+..+..++....++.. +++.
T Consensus 117 ~~e~l~~G~TTv~~~~~~~~~~~~~~~~a~~~~GiR--~~~g~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (429)
T cd01303 117 LDELLRNGTTTACYFATIHPESTEALFEEAAKRGQR--AIAGKVCMDRNAPEYYRDTAESSYRDTKRLIERWHGKSGRVK 194 (429)
T ss_pred HHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCE--EEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 999986791699971577868999999999982995--999863047788421026999999999999998338888447
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCEEECHHHHHHH-------------HHHHHHHHHCCCCCCCCE
Q ss_conf 004467755332211102467899998766420-442033000233357-------------999853100036753311
Q gi|254780215|r 90 AIGETGLDRYHNAHTIEEQKVVFLRHIEASRIT-GIPLVIHSRSADDDM-------------AAILQEEMKKGPFPFVIH 155 (262)
Q Consensus 90 aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~-~~pv~iH~r~a~~~~-------------l~iL~~~~~~~~~~~i~H 155 (262)
..++.-+ ....-.+.+++..++|.++ ++|+.+|+-....|+ ++.+.+...-++.-...|
T Consensus 195 --~~v~p~~-----~~~~s~e~l~~~~~la~~~~~~~i~~H~~E~~~e~~~~~~~~~~~~~~~~~l~~~GlL~~~~~~aH 267 (429)
T cd01303 195 --PAITPRF-----APSCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDYLDVYDKYGLLTEKTVLAH 267 (429)
T ss_pred --EEEECCC-----CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEE
T ss_conf --9982566-----887889999999999987799869972206567999999982799966678875699767559985
Q ss_pred ECCCCHHHHHHHHCCCCEEECCCCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH--HHHHHH
Q ss_conf 214640234432103520202332211333---223333210566717983078667877768875882449--999999
Q gi|254780215|r 156 CFSSSQKLADICLELGGYISFTGMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYV--VNTAKA 230 (262)
Q Consensus 156 ~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i--~~~~~~ 230 (262)
|---+.+.++.+.+.|..++++|...+.-. ..++++++. -=++-+=||+.- -|.|.++ ...+..
T Consensus 268 ~v~l~d~ei~~la~~g~~v~~~P~sn~~lg~g~~p~~~l~~~--Gv~v~LGTD~~~---------~~s~~m~~~mr~a~~ 336 (429)
T cd01303 268 CVHLSEEEFNLLKERGASVAHCPTSNLFLGSGLFDVRKLLDA--GIKVGLGTDVGG---------GTSFSMLDTLRQAYK 336 (429)
T ss_pred ECCCCHHHHHHHHHCCCEEEECCHHHHHHCCCCCCHHHHHHC--CCEEEECCCCCC---------CCCCCHHHHHHHHHH
T ss_conf 214887999999955982776730587725888779999856--985997368888---------999479999999999
Q ss_pred HHHHH--------CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99872--------899899999999999998425
Q gi|254780215|r 231 LAKEK--------DVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 231 iA~i~--------~~~~eei~~~~~~N~~~~f~~ 256 (262)
+++++ .++.+|+.+..+.|.-|..|+
T Consensus 337 ~~~~~~~~~~~~~~~t~~e~l~~ATi~GArALgl 370 (429)
T cd01303 337 VSRLLGYELGGHAKLSPAEAFYLATLGGAEALGL 370 (429)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9998751468999899999999999999998399
No 68
>PRK07328 histidinol-phosphatase; Provisional
Probab=97.39 E-value=0.016 Score=37.56 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=63.6
Q ss_pred CEEEEECCCCC-HHHHCCHHHHHHHHHHCCCCEEEEECCCH---------------------HHHHHHHHHHHHCCCCCC
Q ss_conf 91686138887-56522689999999986998999916798---------------------778999999985572332
Q gi|254780215|r 1 MLIDTHCHLLL-PDFDEDRHDVIMRAHQANVLKMIAIAIKV---------------------KDFVPLIKLCQDYPSSIF 58 (262)
Q Consensus 1 M~iD~H~HL~~-~~~~~d~~~~i~~a~~~gv~~~i~~~~~~---------------------~~~~~~~~l~~~~p~~i~ 58 (262)
|++|.|+|-.. ..-...+++.+++|.+.|+..+..+...+ .-+..+.++.++|++ +-
T Consensus 1 M~~D~H~HT~~s~~a~~~~ee~v~~Ai~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~-i~ 79 (268)
T PRK07328 1 MLVDSHLHTPLCGHATGTPEEYVEEARAKGLAEIGFTDHLPMYWLPPEWYDPPWAMRLEELPAYVSEVLRVRERFPD-LP 79 (268)
T ss_pred CCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CC
T ss_conf 98474547998899888199999999987999899727999777874445854345688899999999999987259-93
Q ss_pred CCCCCCCCCCCCCCHHHHHHH-HHHCCCC----CCCEECCCCCCCCC------CCCCCHHHHHHHHHHHHHHHHCCCC-C
Q ss_conf 112445443344678899885-3100133----32100446775533------2211102467899998766420442-0
Q gi|254780215|r 59 CSVGTHPCHAHEENEVLVDEL-VCLASHP----RVVAIGETGLDRYH------NAHTIEEQKVVFLRHIEASRITGIP-L 126 (262)
Q Consensus 59 ~a~GiHP~~~~~~~~~~~~~l-~~l~~~~----~~~aIGEiGLD~~~------~~~~~e~Q~~vF~~ql~lA~e~~~p-v 126 (262)
.-+|+==.+... .++....+ ... .-+ .+=.++..|.|... .....+..+..|+.+.++.+. +.+ +
T Consensus 80 I~~GiE~d~~~~-~~~~~~~~l~~~-~~D~vigSvH~i~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~-~~fdv 156 (268)
T PRK07328 80 VRLGLEADFHPG-TEEFLARLLRRY-PFDYVIGSVHYLGAWGFDNPDLVAEYARRDLDELYRRYFALVEQAARS-GLFDA 156 (268)
T ss_pred EEECCCCCCCCC-HHHHHHHHHHHC-CCCEEEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-CCCCE
T ss_conf 675553466755-399999999748-997488877514887777877888873058999999999999999865-89888
Q ss_pred EEEC
Q ss_conf 3300
Q gi|254780215|r 127 VIHS 130 (262)
Q Consensus 127 ~iH~ 130 (262)
+=|-
T Consensus 157 lgH~ 160 (268)
T PRK07328 157 IGHL 160 (268)
T ss_pred ECCC
T ss_conf 2553
No 69
>PRK06687 chlorohydrolase; Validated
Probab=97.39 E-value=0.016 Score=37.54 Aligned_cols=137 Identities=13% Similarity=0.046 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHH-----------HHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf 678999987664204420330002333579998531-----------000367533112146402344321035202023
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEE-----------MKKGPFPFVIHCFSSSQKLADICLELGGYISFT 177 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~-----------~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~ 177 (262)
.+.++.-.++|+++++|+.+|+-....+.-.+++++ ..-++...+.||---+.+.++.+.+.|..++.+
T Consensus 195 ~~~l~~~~~~a~~~~~~~~~H~~e~~~e~~~~~~~~G~~p~~~l~~~G~l~~~~~~aH~~~~~~~e~~~la~~g~~v~~~ 274 (422)
T PRK06687 195 TELLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRPVEYLASCGLFKRPTVIAHGVVLNENERAFLAEHDVRVAHN 274 (422)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHCCCEEEEC
T ss_conf 99999999999971984999964525689999998398858999867987865203103523506779999759717867
Q ss_pred CCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH---HHHHHHHHH-----CCCHHHHHHHH
Q ss_conf 322113332---2333321056671798307866787776887588244999---999999872-----89989999999
Q gi|254780215|r 178 GMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVN---TAKALAKEK-----DVSYEDLMEET 246 (262)
Q Consensus 178 g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~---~~~~iA~i~-----~~~~eei~~~~ 246 (262)
|...+.-.. .++++++. . =++-+=||++-. |.+.++.. .+..+.+.+ .++.+++.+..
T Consensus 275 P~sn~~l~~g~~pv~~l~~~-G-v~v~LGtD~~~~---------~~~~d~~~~mr~a~~~~~~~~~~~~~~~~~~~l~~A 343 (422)
T PRK06687 275 PNSNLKLGSGIANVKAMLEA-G-VKVGIATDSVAS---------NNNLDMFEEMRIATLLQKGIHQDATALPVETALKLA 343 (422)
T ss_pred CCCHHHCCCCCCCHHHHHHC-C-CCEEEECCCCCC---------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 52065427788779999876-9-948984688778---------986679999999999998751898678999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998425
Q gi|254780215|r 247 TKNALKLFSK 256 (262)
Q Consensus 247 ~~N~~~~f~~ 256 (262)
+.|.-+.+|.
T Consensus 344 T~~gA~alg~ 353 (422)
T PRK06687 344 TKGAAEVIGM 353 (422)
T ss_pred HHHHHHHHCC
T ss_conf 9999998499
No 70
>PRK09230 cytosine deaminase; Provisional
Probab=97.38 E-value=0.016 Score=37.43 Aligned_cols=220 Identities=7% Similarity=0.053 Sum_probs=100.0
Q ss_pred HHHHHHHCCCCEE---EEE-CCCHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCEEC
Q ss_conf 9999998699899---991-6798778999999985572332---112445443344678899885310013-3321004
Q gi|254780215|r 21 VIMRAHQANVLKM---IAI-AIKVKDFVPLIKLCQDYPSSIF---CSVGTHPCHAHEENEVLVDELVCLASH-PRVVAIG 92 (262)
Q Consensus 21 ~i~~a~~~gv~~~---i~~-~~~~~~~~~~~~l~~~~p~~i~---~a~GiHP~~~~~~~~~~~~~l~~l~~~-~~~~aIG 92 (262)
.++.+...|+.++ +.+ ......++..+++.+++.+.+- .+|--|.........+.+ ++-+.. ..+ ||
T Consensus 107 ~l~~~ia~Gtt~iRtHvDv~dp~l~~leal~~~re~~~~~idlQiVAFPQ~Gl~~~~~~~~Ll---~eAl~~Gadv--vG 181 (426)
T PRK09230 107 TLKWQIANGIQHVRTHVDVSDPTLTALKAMLEVKEEVAPWVDLQIVAFPQEGILSYPNGEALL---EEALRLGADV--VG 181 (426)
T ss_pred HHHHHHHHCHHHEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHH---HHHHHHCCCE--EE
T ss_conf 999999818244013345377035169999999998435201688830365424688779999---9999808988--84
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH---HHHHHHHHHHHHHHC--CCCCC-CCEECCC---CHHH
Q ss_conf 4677553322111024678999987664204420330002---333579998531000--36753-3112146---4023
Q gi|254780215|r 93 ETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS---ADDDMAAILQEEMKK--GPFPF-VIHCFSS---SQKL 163 (262)
Q Consensus 93 EiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~---a~~~~l~iL~~~~~~--~~~~~-i~H~FsG---~~~~ 163 (262)
|+|+.. .+.+...+-+..-++||.+++++|=+|+=. .....++.+-+.... ..-++ +=|||+- +.+.
T Consensus 182 --Gvp~~~--~~~~~~~~~L~~vf~LA~~~~~~vDiHldE~~d~~~~~l~~ia~~t~~~g~~grVt~sH~~sL~~~~~~~ 257 (426)
T PRK09230 182 --AIPHFE--FTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHREGMGARVTASHTTAMHSYNGAY 257 (426)
T ss_pred --CCCCCC--CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCHHH
T ss_conf --789977--7804579999999999998299858877788883378999999999983899865630005453399999
Q ss_pred HHHHH----CCCCEEECCCCC-CHHHH-----------HHHHHHHHCCCCCCEEEEECC---CCCCCCCCCCCCCCHHHH
Q ss_conf 44321----035202023322-11333-----------223333210566717983078---667877768875882449
Q gi|254780215|r 164 ADICL----ELGGYISFTGMI-TFPKY-----------DALRAIARGIPMDRVLVETDS---PYIVPVSCQGKRNEPAYV 224 (262)
Q Consensus 164 ~~~~l----~~g~y~S~~g~i-~~~~~-----------~~~~e~v~~iPldriLlETDs---P~l~p~~~r~~~n~P~~i 224 (262)
+.+.+ +.|.-+--.|.. .|-.. ..++++... -=++.+=||+ ||- || ....|..+
T Consensus 258 ~~~~~~~laeagi~vvslP~tNl~LqgR~~~~p~~Rgvtpv~eL~~a--GV~V~~GsDnvrD~w~---P~--G~~D~Le~ 330 (426)
T PRK09230 258 TSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRGITRVKEMLEA--GINVCFGHDDVFDPWY---PL--GTANMLQV 330 (426)
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHC--CCEEEEECCCCCCCCC---CC--CCCCHHHH
T ss_conf 99999999982985785254332135656778888887789999976--9869980788877874---89--99889999
Q ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999998728-99899999999999998425
Q gi|254780215|r 225 VNTAKALAKEKD-VSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 225 ~~~~~~iA~i~~-~~~eei~~~~~~N~~~~f~~ 256 (262)
...+-.++.+.+ -+++...+.++.|.-++.|.
T Consensus 331 a~l~~~~~~l~~~~~l~~~~~~vT~~~A~~lgl 363 (426)
T PRK09230 331 LHMGLHVCQLMGYGQINDGLNLITTHSARTLNL 363 (426)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999970488778999999974258886199
No 71
>PRK05451 dihydroorotase; Provisional
Probab=97.35 E-value=0.018 Score=37.23 Aligned_cols=234 Identities=16% Similarity=0.154 Sum_probs=109.1
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEE-EEECCCH--HHHHHHHHHHHHCCCCCCCCCCCCCC---CCCCCCHHHH
Q ss_conf 6861388875652268999999998699899-9916798--77899999998557233211244544---3344678899
Q gi|254780215|r 3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKM-IAIAIKV--KDFVPLIKLCQDYPSSIFCSVGTHPC---HAHEENEVLV 76 (262)
Q Consensus 3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~-i~~~~~~--~~~~~~~~l~~~~p~~i~~a~GiHP~---~~~~~~~~~~ 76 (262)
-|-|+||-+ ...+..++.-... +..++ +++.+.+ .+...+.++.++.-..+-....+.|. +..+... .
T Consensus 11 dD~HvHlRd---G~~l~~v~~~~a~-~f~raivMPNl~PPi~t~~~a~~Yr~rI~~~~p~~~~f~PLMtlYLt~~~~--~ 84 (345)
T PRK05451 11 DDWHLHLRD---GAMLKAVVPYTAR-QFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLYLTDNTD--P 84 (345)
T ss_pred CEEEEECCC---CHHHHHHHHHHHH-HCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCC--H
T ss_conf 504666538---5578989999997-679899899999998999999999999997577888740214565427799--9
Q ss_pred HHHHHHCCCCCCCEECCCCCCCCC----CCCCCH-HHHHHHHHHHHHHHHCCCCCEEECHH---------HHHHHH-HHH
Q ss_conf 885310013332100446775533----221110-24678999987664204420330002---------333579-998
Q gi|254780215|r 77 DELVCLASHPRVVAIGETGLDRYH----NAHTIE-EQKVVFLRHIEASRITGIPLVIHSRS---------ADDDMA-AIL 141 (262)
Q Consensus 77 ~~l~~l~~~~~~~aIGEiGLD~~~----~~~~~e-~Q~~vF~~ql~lA~e~~~pv~iH~r~---------a~~~~l-~iL 141 (262)
+.+.......-+.|+ -+|. +.++.- ...+.+...++.+.++++|+.+|+-. .+...+ .+|
T Consensus 85 ~ei~~~~~~~~v~a~-----KlYPaGaTTNS~~GV~~~~~~~~~le~m~~~g~pLliHGEv~~~~idifdrE~~Fi~~~l 159 (345)
T PRK05451 85 DELERAKASGVVTAA-----KLYPAGATTNSDAGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDFDIDIFDREAVFIDRVL 159 (345)
T ss_pred HHHHHHHHCCCEEEE-----EECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999998747967886-----302477535674214239999999999997599045214546776671105877669999
Q ss_pred HHHHHC-CCCCCCC-EECCCCHHHHHHHHC-C--CCEEEC-----------------C------CCCCHHH-HHHHHHHH
Q ss_conf 531000-3675331-121464023443210-3--520202-----------------3------3221133-32233332
Q gi|254780215|r 142 QEEMKK-GPFPFVI-HCFSSSQKLADICLE-L--GGYISF-----------------T------GMITFPK-YDALRAIA 192 (262)
Q Consensus 142 ~~~~~~-~~~~~i~-H~FsG~~~~~~~~l~-~--g~y~S~-----------------~------g~i~~~~-~~~~~e~v 192 (262)
...... +..++++ |. +-..+=++++ . +..-+| . |.+-.++ .+.+++++
T Consensus 160 ~~l~~~fP~LkIvlEHI---STk~aV~~V~~~~~nv~atITpHHLlln~nd~~~~gi~Ph~~C~PvlK~~~dr~AL~~aa 236 (345)
T PRK05451 160 EPLRRRFPKLKIVFEHI---TTKDAVDYVREANDNLAATITPHHLLINRNDMLVGGIRPHLYCLPILKRETHQQALREAA 236 (345)
T ss_pred HHHHHHCCCCEEEEEEC---CHHHHHHHHHHCCCCCCEEECCCCEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99998687876898743---579999999957998632750411243067774257786630078879988999999997
Q ss_pred HCCCCCCEEEEECCCCCCCCCCC---------CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 10566717983078667877768---------87588244999999999872899899999999999998425
Q gi|254780215|r 193 RGIPMDRVLVETDSPYIVPVSCQ---------GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 193 ~~iPldriLlETDsP~l~p~~~r---------~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
.. .-.++.+=||| +|.+-. |--+.|..+...++...+. -.++.+..=+..|..+|||.
T Consensus 237 ~s-G~~kfflGTDs---APH~~~~Ke~~cgcAGiftap~al~~~a~~Fe~~--~aLd~le~F~S~ng~~fY~l 303 (345)
T PRK05451 237 TS-GNPKFFLGTDS---APHARHAKESACGCAGCFSAPAALELYAEVFEEA--GALDKLEAFASLNGPDFYGL 303 (345)
T ss_pred HC-CCCCEEEECCC---CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHCC
T ss_conf 27-99866873699---9874443368878887565387999999999865--82988999985607988199
No 72
>PRK06846 deaminase; Validated
Probab=97.33 E-value=0.0023 Score=43.11 Aligned_cols=198 Identities=15% Similarity=0.056 Sum_probs=93.2
Q ss_pred HHHHHHHHCCCCEE---EE--ECCCHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf 99999998699899---99--16798778999999985572332---112445443344678899885310013332100
Q gi|254780215|r 20 DVIMRAHQANVLKM---IA--IAIKVKDFVPLIKLCQDYPSSIF---CSVGTHPCHAHEENEVLVDELVCLASHPRVVAI 91 (262)
Q Consensus 20 ~~i~~a~~~gv~~~---i~--~~~~~~~~~~~~~l~~~~p~~i~---~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aI 91 (262)
..++.+...|...+ +. +......++-.+++.+++.+.+- .++--|...- ... .+.+++.+... .-.|
T Consensus 118 ~~l~~~~a~Gtt~iRTHvDvdp~~gl~~lea~~~~~e~~~~~i~lqiVAFPQ~Gll~-~~~---~~Ll~eAl~~G-ad~v 192 (410)
T PRK06846 118 KLIELLLSNGATIIRSHCNIDPVIGLKNLENTQAALERYQDGFEYEIVAFPQHGLLR-SNS---EPLMREAMQMG-AHLV 192 (410)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCC-CCH---HHHHHHHHHHC-CCEE
T ss_conf 999999973906187655447751135899999999984422106689710467567-447---99999999858-9679
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHH---HHHHHHHHHHH--CCCCCCC-CEECCC---CHH
Q ss_conf 44677553322111024678999987664204420330002333---57999853100--0367533-112146---402
Q gi|254780215|r 92 GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADD---DMAAILQEEMK--KGPFPFV-IHCFSS---SQK 162 (262)
Q Consensus 92 GEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~---~~l~iL~~~~~--~~~~~~i-~H~FsG---~~~ 162 (262)
| |+|-.....+.+ +.+..-++||.+++++|=+|+-...+ .+++.|-+... ...-++. =|||+= +.+
T Consensus 193 G--GvdP~~~d~d~~---~~L~~~f~LA~~~~~~vD~HldE~~d~~~~~l~~la~~t~~~g~~grVt~sH~~sL~~~~~~ 267 (410)
T PRK06846 193 G--GVDPATVDGAIE---KSLDTMFQIAVEFNKGVDIHLHDTNPLGVATIKKLVETTEEAQWKGRVTISHAFALGDLNEE 267 (410)
T ss_pred E--EECCCCCCCCHH---HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHCCCHH
T ss_conf 8--437766785799---99999999999809992363158898477899999999998299898883734446439999
Q ss_pred HHHHHHC----CCCEEECCCCCCHHHH---HHHHHHHHCCCCCCEEEEECC---CCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 3443210----3520202332211333---223333210566717983078---66787776887588244999999999
Q gi|254780215|r 163 LADICLE----LGGYISFTGMITFPKY---DALRAIARGIPMDRVLVETDS---PYIVPVSCQGKRNEPAYVVNTAKALA 232 (262)
Q Consensus 163 ~~~~~l~----~g~y~S~~g~i~~~~~---~~~~e~v~~iPldriLlETDs---P~l~p~~~r~~~n~P~~i~~~~~~iA 232 (262)
.+++.++ .|.-+ .. +.++. ..++++.+ .. =++.+=+|. ||- ||. . .++..++..+|
T Consensus 268 ~~~~~~~~la~agI~v--vs--t~P~~r~v~pv~eL~~-aG-V~V~~g~Dni~Dpw~---P~G--~---gD~Le~a~~~a 333 (410)
T PRK06846 268 EVEELAERLAAQQISI--TS--TVPIGRLHMPLPLLHE-KG-VKVSLGTDSVTDHWS---PFG--T---GDMLEKANLYA 333 (410)
T ss_pred HHHHHHHHHHHCCCEE--EE--ECCCCCCCCCHHHHHH-CC-CEEEEECCCCCCCCC---CCC--C---CCHHHHHHHHH
T ss_conf 9999999999859939--98--5899899787999997-69-919982688868987---888--8---88999999999
Q ss_pred HHHCCCHHH
Q ss_conf 872899899
Q gi|254780215|r 233 KEKDVSYED 241 (262)
Q Consensus 233 ~i~~~~~ee 241 (262)
.+.++.-++
T Consensus 334 ~~~~~~~~~ 342 (410)
T PRK06846 334 ERYRWIDEQ 342 (410)
T ss_pred HHHCCCCHH
T ss_conf 986899889
No 73
>PRK09060 dihydroorotase; Validated
Probab=97.26 E-value=0.022 Score=36.57 Aligned_cols=244 Identities=17% Similarity=0.193 Sum_probs=107.2
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 1686138887565--22689999999986998999916------798778999999985572332112445443344678
Q gi|254780215|r 2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE 73 (262)
Q Consensus 2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~ 73 (262)
+||.|+|+..+-+ .+|+..--..|...|+..++... .+.+.+....+.++. ..++-+|+|.--..+ ..
T Consensus 58 ~ID~HvH~~ePG~~~ked~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~---~~~vd~~~~~g~~~~-~~ 133 (444)
T PRK09060 58 VIDSQVHFREPGLEHKEDLETGSRAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARH---RMHCDFAFYVGGTRD-NA 133 (444)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC---CCCCEEEEEEEECCC-CH
T ss_conf 89755057999976524465534989809937999777889996889999999998742---654115677743278-77
Q ss_pred HHHHHHHHHCCC-----------------------------CCCCEE--------CC-CCC----CC--CCCCCCCHHHH
Q ss_conf 899885310013-----------------------------332100--------44-677----55--33221110246
Q gi|254780215|r 74 VLVDELVCLASH-----------------------------PRVVAI--------GE-TGL----DR--YHNAHTIEEQK 109 (262)
Q Consensus 74 ~~~~~l~~l~~~-----------------------------~~~~aI--------GE-iGL----D~--~~~~~~~e~Q~ 109 (262)
..+..+..+..- .+.+++ .| -|+ |. +....+.+.-.
T Consensus 134 ~~l~el~~~~g~~~~k~f~~~s~g~~~~~d~~~l~~~~~~~~~~~~~H~Ed~~~l~~~~~~~~~g~~~~~~~~r~~~~e~ 213 (444)
T PRK09060 134 DELAELERLPGCAGVKVFMGSSTGDLLVEDDEGLRRILRNGRRRAAFHSEDEYRLRERKGLRVEGDPRSHPVWRDEEAAL 213 (444)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHHHHHHCCCCEEEECCCHHHHHHCHHHCCCCCHHHCCCCCCHHHHH
T ss_conf 89999985103654899841777861006999999999854873387347889986222321279976745558889999
Q ss_pred HHHHHHHHHHHHCCCCCEE-ECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH-HHH
Q ss_conf 7899998766420442033-00023335799985310003675331121464023443210352020233221133-322
Q gi|254780215|r 110 VVFLRHIEASRITGIPLVI-HSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPK-YDA 187 (262)
Q Consensus 110 ~vF~~ql~lA~e~~~pv~i-H~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~-~~~ 187 (262)
....+-+.+|++.+.++-| |.- -.+.++++++.......-+.-|-++=+.+. -+-..|-++-++|.+--+. .+.
T Consensus 214 ~ai~r~i~la~~tg~~lhi~HvS--t~~~~~~i~~ak~~vt~E~~ph~L~l~~~d--~~~~~g~~~k~~PPLR~~~d~~a 289 (444)
T PRK09060 214 LATRRLVRLARETGRRIHVLHVS--TAEEIDFLADHKDVATVEVTPHHLTLAAPD--CYERLGTLAQMNPPVRDARHRDA 289 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHCCCCEEEEECHHHCCCHHH--HHHCCCCEEEECCCCCCHHHHHH
T ss_conf 99999999999879937999558--699999999708875899962052085166--65144963997489899799999
Q ss_pred HHHHHHCCCCCCEEEEEC-CCCCCCCCCC-------CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 333321056671798307-8667877768-------87588244999999999872899899999999999998425
Q gi|254780215|r 188 LRAIARGIPMDRVLVETD-SPYIVPVSCQ-------GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 188 ~~e~v~~iPldriLlETD-sP~l~p~~~r-------~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
+.+.++.=-.| .+=|| +|+-....-+ |-..-=..++..+..+.+ ..++++.+.+.+..|--|+||-
T Consensus 290 L~~~l~~G~ID--~I~SDH~P~~~~~K~~~f~~a~~G~~glEt~lplll~~v~~-g~lsl~~~v~~~s~nPAki~GL 363 (444)
T PRK09060 290 LWRGVRQGIVD--VLGSDHAPHTLEEKAKPYPASPSGMTGVQTLVPVMLDHVNA-GRLSLERFVDLTSAGPARIFGI 363 (444)
T ss_pred HHHHHHCCCCC--EEECCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99998669960--99708978897885787641138973088799999999982-9832999999971749998498
No 74
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=97.15 E-value=0.028 Score=35.85 Aligned_cols=215 Identities=15% Similarity=0.146 Sum_probs=113.0
Q ss_pred HHHHHCCCCEEEEECC--------CHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCC---------CCCHHHHHHHHH
Q ss_conf 9999869989999167--------9877899999998557233211244----544334---------467889988531
Q gi|254780215|r 23 MRAHQANVLKMIAIAI--------KVKDFVPLIKLCQDYPSSIFCSVGT----HPCHAH---------EENEVLVDELVC 81 (262)
Q Consensus 23 ~~a~~~gv~~~i~~~~--------~~~~~~~~~~l~~~~p~~i~~a~Gi----HP~~~~---------~~~~~~~~~l~~ 81 (262)
.++..+|++.++.++. .+.....+.+.+++.+-..+.+-++ +..... ......+++...
T Consensus 114 ~E~l~sG~TT~~d~~~~~~~~~~~~~~~~~~~~~a~~e~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (480)
T PRK06151 114 AQLLRNGITTAAPIASLFYRQWAETVAEFAAAAEAAGELGLRVYLGPAYRSGGSVLEADGRLRPVFDEARGLAGLDEAIA 193 (480)
T ss_pred HHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99996598887522332235655445549999999998098699952422776200368877886414558889999999
Q ss_pred HCC------CCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHH-----------HHHHHHH
Q ss_conf 001------33321004467755332211102467899998766420442033000233357-----------9998531
Q gi|254780215|r 82 LAS------HPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDM-----------AAILQEE 144 (262)
Q Consensus 82 l~~------~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~-----------l~iL~~~ 144 (262)
+.. ++.+. +-++...-..- -.+.+++..++|+++++|+.+|+-....|. ++.|.+.
T Consensus 194 ~~~~~~~~~~~~v~--~~~ap~~~~t~-----s~e~l~~~~~~A~e~g~~i~~Hl~E~~~E~~~~~~~~G~~pv~~l~~l 266 (480)
T PRK06151 194 FIKRVDGAHNDLVR--GMLAPDRVETC-----TVDLLRRTAAAARELGVPVRLHCCQSVIEVETVRRLHGTTPLEWLHSV 266 (480)
T ss_pred HHHHHHCCCCCEEE--EEEECCCCCCC-----CHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHC
T ss_conf 99985145898278--99837877778-----999999999999976996898603671589999998599989999970
Q ss_pred HHCCCCCCCCEECCCCH-HHHHHHHCCCCEEECCCCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 00036753311214640-2344321035202023322113332---2333321056671798307866787776887588
Q gi|254780215|r 145 MKKGPFPFVIHCFSSSQ-KLADICLELGGYISFTGMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNE 220 (262)
Q Consensus 145 ~~~~~~~~i~H~FsG~~-~~~~~~l~~g~y~S~~g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~ 220 (262)
.--++.-...||---+. +.++.+.+.|..++.+|...++.+. .++++.+ ... ++-|=||+. |. .
T Consensus 267 GlL~~~~~~aH~v~ltde~di~lla~~g~~vah~P~Sn~~lg~g~~pv~~~~~-~Gv-~v~LGTD~~---~~-------d 334 (480)
T PRK06151 267 GLLSPRLIIPHGTYISGEPDLALYAEHGVSIVHCPLVSARRGSALNSFGRYRE-AGI-NLAMGTDTW---PP-------D 334 (480)
T ss_pred CCCCCCEEEEEEEEECCHHHHHHHHHCCCEEEECHHHHHHCCCCCCCHHHHHH-CCC-CEEECCCCC---CC-------C
T ss_conf 87667647888754087699999986397599885778744899865999985-599-666616999---98-------7
Q ss_pred HHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 244999999999872-----899899999999999998425
Q gi|254780215|r 221 PAYVVNTAKALAKEK-----DVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 221 P~~i~~~~~~iA~i~-----~~~~eei~~~~~~N~~~~f~~ 256 (262)
...-.+.+-.+++.. .++.+++.+..+.|.-|.+|+
T Consensus 335 m~~~mr~a~~~~r~~~~~~~~~~~~~~l~mAT~~GArALg~ 375 (480)
T PRK06151 335 MLMNMRVGLYLGRVMEGDLDAASSADLFDAATLGGARALGR 375 (480)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 79999999999999739999899999999999999998289
No 75
>PRK09236 dihydroorotase; Reviewed
Probab=97.12 E-value=0.03 Score=35.68 Aligned_cols=84 Identities=24% Similarity=0.305 Sum_probs=45.4
Q ss_pred CCCCEEECCCCCCHHH-HHHHHHHHHCCCCCCE-EEEEC-CCCCCCCC-------CCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 0352020233221133-3223333210566717-98307-86678777-------6887588244999999999872899
Q gi|254780215|r 169 ELGGYISFTGMITFPK-YDALRAIARGIPMDRV-LVETD-SPYIVPVS-------CQGKRNEPAYVVNTAKALAKEKDVS 238 (262)
Q Consensus 169 ~~g~y~S~~g~i~~~~-~~~~~e~v~~iPldri-LlETD-sP~l~p~~-------~r~~~n~P~~i~~~~~~iA~i~~~~ 238 (262)
..|..+-++|.+-... .+.+.+.++. ..| .+-|| +|+..... ..|-..-...++.+.+.+ .-..++
T Consensus 274 ~~~~~~k~~Pplr~~~d~~aL~~al~~---g~id~I~sDHaP~~~~~K~~~~~~a~~G~~gle~~lp~~l~~v-~~g~ls 349 (444)
T PRK09236 274 RLGNLIKCNPAIKTASDREALRQALAN---GRIDVIATDHAPHTWEEKQGPYFQAPSGLPLVQHALVALLELV-HEGKLS 349 (444)
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCCCHHHCCCCHHHCCCCCCCHHHHHHHHHHHH-HHCCCC
T ss_conf 449710136875856779999999747---9679997688776776724884019998416999999999999-808746
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999998425
Q gi|254780215|r 239 YEDLMEETTKNALKLFSK 256 (262)
Q Consensus 239 ~eei~~~~~~N~~~~f~~ 256 (262)
++++.+.+..|.-++||-
T Consensus 350 l~~~v~~~s~nPA~i~GL 367 (444)
T PRK09236 350 LEQVVEKTAHAPAELFAI 367 (444)
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999985769998498
No 76
>PRK07583 cytosine deaminase; Validated
Probab=97.01 E-value=0.01 Score=38.81 Aligned_cols=216 Identities=14% Similarity=0.129 Sum_probs=100.1
Q ss_pred HHHHHHCCCCEEEE---E--CCCHHHHHHHHHHHHHCCCCCCC-CCCCCCCCC--CCCCHHHHHHHHHHCCCCCCCEECC
Q ss_conf 99999869989999---1--67987789999999855723321-124454433--4467889988531001333210044
Q gi|254780215|r 22 IMRAHQANVLKMIA---I--AIKVKDFVPLIKLCQDYPSSIFC-SVGTHPCHA--HEENEVLVDELVCLASHPRVVAIGE 93 (262)
Q Consensus 22 i~~a~~~gv~~~i~---~--~~~~~~~~~~~~l~~~~p~~i~~-a~GiHP~~~--~~~~~~~~~~l~~l~~~~~~~aIGE 93 (262)
++.+...|+..+=. + ......|+-.+++.++|.+.+-. .+.+=|... ........+. ......+ +|
T Consensus 128 l~~a~a~Gtt~iRTHvDv~~~~~~~~~e~~~~lr~~~~~~i~lq~VA~~p~~~~~~~~~~~L~~~---~~~~g~v--vG- 201 (437)
T PRK07583 128 LRCAYAHGTAAIRTHLDSFGPQAAISWEVFAELREAWAGRITLQAVSLVPLDYYLTDAGERLADL---VAEAGGL--LG- 201 (437)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHH---HHHHCCE--EC-
T ss_conf 99999708747999842558840458999999999832660454564207533478279999999---9971984--73-
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH---HHHHHHHHHHHHC--CCCCC-CCEECC-CC--HHHH
Q ss_conf 67755332211102467899998766420442033000233---3579998531000--36753-311214-64--0234
Q gi|254780215|r 94 TGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD---DDMAAILQEEMKK--GPFPF-VIHCFS-SS--QKLA 164 (262)
Q Consensus 94 iGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~---~~~l~iL~~~~~~--~~~~~-i~H~Fs-G~--~~~~ 164 (262)
|+++.. .+.+. ....-++||.++|++|=+|+=... ...++.+-+.... ..-++ +=|||+ |. .+.+
T Consensus 202 -Gv~~~~--~d~~~---~l~~vf~lA~~~g~~vDiHlde~~d~~~~~l~~la~~t~~~g~~grVt~sH~~sL~~~~~~~~ 275 (437)
T PRK07583 202 -GVTYMN--PDLDA---QLDRLFALAAERGLDLDLHVDETGDPASRTLKAVAEAALRNGFEGKVTCGHCCSLAVQPEEQA 275 (437)
T ss_pred -CCCCCC--CCHHH---HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHCCCHHHH
T ss_conf -878988--57999---999999999980999532357888717999999999999809998655202345532999999
Q ss_pred ----HHHHCCCCEEECCCCCC-HH--H----HH------HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ----43210352020233221-13--3----32------23333210566717983078667877768875882449999
Q gi|254780215|r 165 ----DICLELGGYISFTGMIT-FP--K----YD------ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNT 227 (262)
Q Consensus 165 ----~~~l~~g~y~S~~g~i~-~~--~----~~------~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~ 227 (262)
..+.+.|.-+--.|... |- + .. .++++... -=++-+=||+-.=.-.||. ...|. .+
T Consensus 276 ~~~~~~lA~agi~vvslP~~nl~Lq~R~~~~~P~~Rgv~pv~eL~~a--GV~Valg~Dni~Dpw~P~G--~gDmL---e~ 348 (437)
T PRK07583 276 QETLALVAEAGIAIVSLPMCNLYLQDRQPGRTPRWRGVTLVHELKAA--GIPVAFASDNCRDPFYAYG--DHDML---EV 348 (437)
T ss_pred HHHHHHHHHCCCCEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHHC--CCEEEEECCCCCCCCCCCC--CCCHH---HH
T ss_conf 99999999839948975652200036677778876887786999978--9818993798878877688--98899---99
Q ss_pred HHHHHHHH--CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999872--899899999999999998425
Q gi|254780215|r 228 AKALAKEK--DVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 228 ~~~iA~i~--~~~~eei~~~~~~N~~~~f~~ 256 (262)
+.....+- +.+.++....++.|.-+..|.
T Consensus 349 ~~~a~~~~~ld~~~~~al~~iT~~~A~~lgl 379 (437)
T PRK07583 349 FREAVRILHLDHPYDDWPAAVTTTPADIMGL 379 (437)
T ss_pred HHHHHHHHCCCCCHHHHHHHHCHHHHHHCCC
T ss_conf 9999999744811999999854239987599
No 77
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=96.96 E-value=0.042 Score=34.73 Aligned_cols=238 Identities=18% Similarity=0.183 Sum_probs=102.0
Q ss_pred EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 16861388875--6522689999999986998999916------798778999999985572332112445443344678
Q gi|254780215|r 2 LIDTHCHLLLP--DFDEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE 73 (262)
Q Consensus 2 ~iD~H~HL~~~--~~~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~ 73 (262)
+||.|+|+..+ ...+|++.--..|...|+..++.+- .+.+.+....+.++.. .++-+|+|.--. ..+.
T Consensus 8 ~iD~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~---~~~d~~~~~~~~-~~~~ 83 (344)
T cd01316 8 LIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAK---ARCDYAFSIGAT-STNA 83 (344)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCC---CCCCEEEEEEEC-CCCH
T ss_conf 880057779999877464999999998479779977999989979999999999974317---732112688852-6767
Q ss_pred HHHHHHHHHCCCCCCCEECCCC----CCC----------CCCCCC--CHHHHHHHHHHHHHHHHCCCCC-EEECHHHHHH
Q ss_conf 8998853100133321004467----755----------332211--1024678999987664204420-3300023335
Q gi|254780215|r 74 VLVDELVCLASHPRVVAIGETG----LDR----------YHNAHT--IEEQKVVFLRHIEASRITGIPL-VIHSRSADDD 136 (262)
Q Consensus 74 ~~~~~l~~l~~~~~~~aIGEiG----LD~----------~~~~~~--~e~Q~~vF~~ql~lA~e~~~pv-~iH~r~a~~~ 136 (262)
..+.++......-.+. ..+.. +|. +....+ .+.......+-+.+|+..+.++ +.|. +-.+
T Consensus 84 ~~l~~l~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~aE~~~~~~~l~la~~~~~~lHi~Hi--St~~ 160 (344)
T cd01316 84 ATVGELASEAVGLKFY-LNETFSTLILDKITAWASHFNAWPSTKPIVTHAKSQTLAAVLLLASLHNRSIHICHV--SSKE 160 (344)
T ss_pred HHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC--CCHH
T ss_conf 8999987546838999-635563577779999999986364569731422389999999999987998999946--8877
Q ss_pred HHHHHHHHHHCCC---CCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH-HHHHHHHHHCCCCCCEEEEEC-CCCCCC
Q ss_conf 7999853100036---75331121464023443210352020233221133-322333321056671798307-866787
Q gi|254780215|r 137 MAAILQEEMKKGP---FPFVIHCFSSSQKLADICLELGGYISFTGMITFPK-YDALRAIARGIPMDRVLVETD-SPYIVP 211 (262)
Q Consensus 137 ~l~iL~~~~~~~~---~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~-~~~~~e~v~~iPldriLlETD-sP~l~p 211 (262)
.++++++...++. .-+..|-..-+.+... +.++ -++|.+.-+. .+.+.+.+.. .| .+-|| +|+-..
T Consensus 161 ~v~lI~~ak~~G~~Vt~Et~ph~L~l~~~~~~---~~~~--k~~PPLR~~~d~~aL~~~l~~--ID--~IaSDHaP~~~~ 231 (344)
T cd01316 161 EINLIRLAKARGLKVTCEVSPHHLFLSQDDLP---RGQY--EVRPFLPTREDQEALWENLDY--ID--CFATDHAPHTLA 231 (344)
T ss_pred HHHHHHHHHHCCCCEEEEECHHHHCCCHHHHH---CCCC--CCCCCCCCHHHHHHHHHHHHC--CC--EEECCCCCCCHH
T ss_conf 99999999872897478634554208775763---3598--728899997899999975422--77--897167765765
Q ss_pred CCCC-----CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7768-----87588244999999999872899899999999999998425
Q gi|254780215|r 212 VSCQ-----GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 212 ~~~r-----~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
.... |-..--..++.....+ .-..++++.+.+.+..|--|+||-
T Consensus 232 ~K~~~~~~~G~~GlEt~lp~~~~~v-~~g~lsl~~lv~~~s~nPAki~gl 280 (344)
T cd01316 232 EKTGNKPPPGFPGVETSLPLLLTAV-HEGRLTIEDIVDRLHTNPKRIFNL 280 (344)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 5022469998562776899999999-839978999999994989997288
No 78
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=96.95 E-value=0.043 Score=34.63 Aligned_cols=137 Identities=18% Similarity=0.184 Sum_probs=70.6
Q ss_pred HHHHHHHCCCCCEE-ECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHH-------HH-HHCCCCEEECCCCCCHHHH
Q ss_conf 98766420442033-000233357999853100036753311214640234-------43-2103520202332211333
Q gi|254780215|r 115 HIEASRITGIPLVI-HSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLA-------DI-CLELGGYISFTGMITFPKY 185 (262)
Q Consensus 115 ql~lA~e~~~pv~i-H~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~-------~~-~l~~g~y~S~~g~i~~~~~ 185 (262)
.++.+.+.+..+.+ |+....+++.+.+. .+ .+.+.|+|++-...- .. +.....|..+-..-.+-..
T Consensus 177 ~i~~~~~~g~~~~~gh~~~~~~~~~~a~~----~g-~~~~~H~~~~~~~~~~r~~~~~~~~~~~~~~~~e~i~dg~h~~~ 251 (374)
T cd00854 177 LIRYLVERGIIVSIGHSDATYEQAVAAFE----AG-ATHVTHLFNAMSPLHHREPGVVGAALSDDDVYAELIADGIHVHP 251 (374)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHH----CC-CCEEEEECCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf 99999976996750555477999999998----49-97898603355722345753677876089833889605526699
Q ss_pred HHHHHHHHCCCCCCEEEEECCCC---CCCCCCC--CC------------C----CCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22333321056671798307866---7877768--87------------5----88244999999999872899899999
Q gi|254780215|r 186 DALRAIARGIPMDRVLVETDSPY---IVPVSCQ--GK------------R----NEPAYVVNTAKALAKEKDVSYEDLME 244 (262)
Q Consensus 186 ~~~~e~v~~iPldriLlETDsP~---l~p~~~r--~~------------~----n~P~~i~~~~~~iA~i~~~~~eei~~ 244 (262)
..++.+.+..|.+++.+-||+.. +.+..+. +. . .....+...++.+.+.-+++.+++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~td~~~a~g~~~~~~~~~~~~~~~~~~~~~l~~g~~ag~~~~l~~~~~~~v~~~gl~~~~al~ 331 (374)
T cd00854 252 AAVRLAYRAKGADKIVLVTDAMAAAGLPDGEYELGGQTVTVKDGVARLADGTLAGSTLTMDQAVRNMVKWGGCPLEEAVR 331 (374)
T ss_pred HHHHHHHHHCCCCCEEEEECCHHHCCCCCCEEEECCCEEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999997368774899704444348998716506816798768677158970352310999999999970999999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999998425
Q gi|254780215|r 245 ETTKNALKLFSK 256 (262)
Q Consensus 245 ~~~~N~~~~f~~ 256 (262)
..+.|.-|+||.
T Consensus 332 ~aT~npAk~lgl 343 (374)
T cd00854 332 MASLNPAKLLGL 343 (374)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999699
No 79
>PRK09248 putative hydrolase; Validated
Probab=96.85 E-value=0.031 Score=35.56 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=27.6
Q ss_pred CEEEEECCCCCH-HHHCCHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 916861388875-652268999999998699899991679
Q gi|254780215|r 1 MLIDTHCHLLLP-DFDEDRHDVIMRAHQANVLKMIAIAIK 39 (262)
Q Consensus 1 M~iD~H~HL~~~-~~~~d~~~~i~~a~~~gv~~~i~~~~~ 39 (262)
+++|.|+|-... .-.+.+++.++.|.+.|++.+...-..
T Consensus 3 ~~~DlH~HT~~S~ha~~ti~E~~~aA~~~Gl~~i~iTDH~ 42 (246)
T PRK09248 3 YLVDTHTHTIASGHAYSTLHENAAEAKQKGIKLFAITDHG 42 (246)
T ss_pred CCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf 4558577888768997969999999998699689989899
No 80
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=96.75 E-value=0.061 Score=33.64 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=42.4
Q ss_pred HHCCCCCCEEEEECCCCCCCCCCCCC------CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 21056671798307866787776887------588244999999999872899899999999999998425
Q gi|254780215|r 192 ARGIPMDRVLVETDSPYIVPVSCQGK------RNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 192 v~~iPldriLlETDsP~l~p~~~r~~------~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
...+|.+++.+=||+--..|.-.+.. ......+...+..+.+.-++|++++.+.++.|.-++||-
T Consensus 271 ~~~i~~~~~~~~~d~~~~~~~~~~~g~~~~~~~g~~~t~~~~~~~~v~~g~l~le~av~~~T~NPAk~lgl 341 (387)
T cd01308 271 EQGVPLERITFSSDGNGSLPKFDENGNLVGLGVGSVDTLLREVREAVKCGDIPLEVALRVITSNVARILKL 341 (387)
T ss_pred HCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 74998643999946999866410148551367675888999999999976999999999985899997499
No 81
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.076 Score=33.00 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=59.5
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEE------CCCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 1686138887565--2268999999998699899991------6798778999999985572-33211244544334467
Q gi|254780215|r 2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAI------AIKVKDFVPLIKLCQDYPS-SIFCSVGTHPCHAHEEN 72 (262)
Q Consensus 2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~------~~~~~~~~~~~~l~~~~p~-~i~~a~GiHP~~~~~~~ 72 (262)
+||.|.|+..+-+ .++++.--..|...|+..++.. .++++.+...++.+++..- .+.+..|+=.++.
T Consensus 55 ~ID~HVH~repg~~~ke~~~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~---- 130 (430)
T COG0044 55 LVDLHVHFREPGFEHKETFETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNL---- 130 (430)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCC----
T ss_conf 7566773389984135568769999975892699977789999887999999998640375478999876412651----
Q ss_pred HHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH
Q ss_conf 8899885310013332100446775533221110246789999876642044203300023
Q gi|254780215|r 73 EVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA 133 (262)
Q Consensus 73 ~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a 133 (262)
... ++..... ++|.=-|-+.........++++-++.|++++.++++||-+.
T Consensus 131 -~~~-~~~~~~~--------~~g~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~ 181 (430)
T COG0044 131 -GKL-ELTERGV--------EAGFKGFMDDSTGALDDDVLEEALEYAAELGALILVHAEDD 181 (430)
T ss_pred -HHH-HHHHHHH--------CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf -047-7664211--------15469995698765688999999999985598699971780
No 82
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type; InterPro: IPR004722 Dihydroorotase belongs to MEROPS peptidase family M38 (clan MJ), where it is classified as a non-peptidase homologue. DHOase catalyses the third step in the de novo biosynthesis of pyrimidine, the conversion of ureidosuccinic acid (N-carbamoyl-L-aspartate) into dihydroorotate. Dihydroorotase binds a zinc ion which is required for its catalytic activity . In bacteria, DHOase is a dimer of identical chains of about 400 amino-acid residues (gene pyrC). In higher eukaryotes, DHOase is part of a large multi-functional protein known as 'rudimentary' in Drosophila melanogaster and CAD in mammals and which catalyzes the first three steps of pyrimidine biosynthesis . The DHOase domain is located in the central part of this polyprotein. In yeasts, DHOase is encoded by a monofunctional protein (gene URA4). However, a defective DHOase domain is found in a multifunctional protein (gene URA2) that catalyzes the first two steps of pyrimidine biosynthesis. The comparison of DHOase sequences from various sources shows that there are two highly conserved regions. The first located in the N-terminal extremity contains two histidine residues suggested to be involved in binding the zinc ion. The second is found in the C-terminal part. Members of this family of proteins are predicted to adopt a TIM barrel fold . Dihydroorotase 'multifunctional complex type' 3.5.2.3 from EC, in contrast to the homodimeric type of dihydroorotase found in Escherichia coli, tends to appear in a large multifunctional complex with aspartate transcarbamoylase. Homologous domains appear in multifunctional proteins of higher eukaryotes. In some species, including Pseudomonas putida and Pseudomonas aeruginosa, this protein is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase (ATCase). In these species, a second, active dihydroorotase is also present..
Probab=96.57 E-value=0.0087 Score=39.26 Aligned_cols=249 Identities=16% Similarity=0.158 Sum_probs=133.2
Q ss_pred EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCC----------------CCC
Q ss_conf 16861388875--6522689999999986998999916------79877899999998557----------------233
Q gi|254780215|r 2 LIDTHCHLLLP--DFDEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYP----------------SSI 57 (262)
Q Consensus 2 ~iD~H~HL~~~--~~~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p----------------~~i 57 (262)
+||.|.||-.+ ++-+|++.=-.-|..-|+..++.+- .+.+.+.+.++-+++-. ..=
T Consensus 47 ~iD~HVHlRdpg~eyKEdi~~G~~AA~~GG~t~V~dMPNT~PP~d~~~~~~~~~~~~~~~~GvnahhqPPGdPqaenrPd 126 (459)
T TIGR00857 47 LIDLHVHLRDPGEEYKEDIESGSKAAIHGGFTTVADMPNTKPPIDTPETLERKLQRLKKKSGVNAHHQPPGDPQAENRPD 126 (459)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 04777621889874113188999997558715899857431377898999999997410146423468555875355888
Q ss_pred CCCCCCCCCCCCCCCHHHHHH---HHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH-
Q ss_conf 211244544334467889988---5310013332100446775533221110246789999876642044203300023-
Q gi|254780215|r 58 FCSVGTHPCHAHEENEVLVDE---LVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA- 133 (262)
Q Consensus 58 ~~a~GiHP~~~~~~~~~~~~~---l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a- 133 (262)
-..+=+|||..-..... .++ +.+.-.-..+-++|++=. +......+.....+-|+.|.+.++|+.+||-+-
T Consensus 127 sa~vd~~~~~~vt~~~~-gk~~~~~~~~~~~~~~~~~G~~F~----~d~~~~~~~~~~~~~le~a~~~Gv~~~~HaE~~~ 201 (459)
T TIGR00857 127 SALVDVLLYAGVTKGNK-GKEIVRLTEAYELKEAGAVGEVFI----DDGSEVLDILSMRKALEYAAELGVLIVLHAEDPD 201 (459)
T ss_pred CCEEEEEEEEEEECCCC-CCCEEEECCHHHHHCCCEEEEEEE----ECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 52554578645704445-551011125056510643689876----4552342034567899988557936998258867
Q ss_pred --------------------------H----HHHHHHHHHHHHC-CCCCCCC-EECC-CCHHHHHHHHCC--CCE--EEC
Q ss_conf --------------------------3----3579998531000-3675331-1214-640234432103--520--202
Q gi|254780215|r 134 --------------------------D----DDMAAILQEEMKK-GPFPFVI-HCFS-SSQKLADICLEL--GGY--ISF 176 (262)
Q Consensus 134 --------------------------~----~~~l~iL~~~~~~-~~~~~i~-H~Fs-G~~~~~~~~l~~--g~y--~S~ 176 (262)
+ .++++.++.+... ....++| |-=| .+.+.++++-+. |.. +.+
T Consensus 202 l~~~~~~~~~~~~~~~~gl~~rp~~aE~~~va~~~~l~~~~g~~nkkPhvHicHiSTk~~~~~i~~~k~~~~Gi~~T~EV 281 (459)
T TIGR00857 202 LIAGGLVEYEGRSAAALGLKARPPEAEEVAVARLLELAKHAGCPNKKPHVHICHISTKESLELIKKAKKQLKGIKITAEV 281 (459)
T ss_pred HHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 73267421223324753678882033799999999999861888888843699865001588999876400462389984
Q ss_pred CCC-CCHHH--HHH--------HHHHHHCCCC-----CCE------------EEEEC-CCCCCCCCCCCCCCC-H-----
Q ss_conf 332-21133--322--------3333210566-----717------------98307-866787776887588-2-----
Q gi|254780215|r 177 TGM-ITFPK--YDA--------LRAIARGIPM-----DRV------------LVETD-SPYIVPVSCQGKRNE-P----- 221 (262)
Q Consensus 177 ~g~-i~~~~--~~~--------~~e~v~~iPl-----dri------------LlETD-sP~l~p~~~r~~~n~-P----- 221 (262)
||- +...+ -.. +-..+|.-|. ||+ .+=|| ||....+....-.+- |
T Consensus 282 tPHHLlL~~~~~~~GlPPhtP~~~~~~kvNPPLR~~eDr~aL~~~~~~G~ID~iAsDHAPH~~eEK~~~~~~appG~pgl 361 (459)
T TIGR00857 282 TPHHLLLSEEDVARGLPPHTPPLDTNLKVNPPLREEEDRLALIEGLKDGIIDIIASDHAPHTLEEKLKEVAAAPPGIPGL 361 (459)
T ss_pred CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHCCHHHCCCCCCHH
T ss_conf 67300178688826887888888885013779888535999977663472017855786421265502155467887338
Q ss_pred -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf -4499999999987289989999999999999842
Q gi|254780215|r 222 -AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 222 -~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~ 255 (262)
..++.+++.+.+=.=+|...+.+.+..|=.|.||
T Consensus 362 e~~~p~~l~~~~kg~lis~~~~~~~~s~nParIfg 396 (459)
T TIGR00857 362 ETVLPLLLQLLVKGNLISLKDLVRMLSINPARIFG 396 (459)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHCC
T ss_conf 88999999997548732689999998526551122
No 83
>PRK04250 dihydroorotase; Provisional
Probab=96.56 E-value=0.082 Score=32.78 Aligned_cols=241 Identities=15% Similarity=0.133 Sum_probs=117.6
Q ss_pred EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 168613888756--522689999999986998999916------798778999999985572332112445443344678
Q gi|254780215|r 2 LIDTHCHLLLPD--FDEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE 73 (262)
Q Consensus 2 ~iD~H~HL~~~~--~~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~ 73 (262)
+||.|+|+..+. ..+++..--..|...|+..++... .+++.+....+.++. ..+.-+++|........+
T Consensus 54 ~ID~hvH~~~pg~~~ke~~~sgs~AAa~GGvTtv~~mPnt~p~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~ 130 (408)
T PRK04250 54 LIDVHVHLRDFEEKYKETIETGTKAALHGGITTVFDMPNTKPPIMDEKTLKLREGIFEK---KSYADYALGFLLAGNCGE 130 (408)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC---CCEEEEEEEEEEECCCCH
T ss_conf 89645067888853034688789999838935997678899986879999999998476---975788307996077303
Q ss_pred --HHHHHHHH------------------HCCCCCCCEECCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCCCE-EEC
Q ss_conf --89988531------------------001333210044677553--3221110246789999876642044203-300
Q gi|254780215|r 74 --VLVDELVC------------------LASHPRVVAIGETGLDRY--HNAHTIEEQKVVFLRHIEASRITGIPLV-IHS 130 (262)
Q Consensus 74 --~~~~~l~~------------------l~~~~~~~aIGEiGLD~~--~~~~~~e~Q~~vF~~ql~lA~e~~~pv~-iH~ 130 (262)
.....+.+ +.....++++-.=.-+.. ....+.+.......+-+.||+..+-|+- .|.
T Consensus 131 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~vHaEd~~l~~~~~~rP~~aE~~ai~r~~~la~~tg~~lhi~Hv 210 (408)
T PRK04250 131 AKPVKADFYKIFMGASTGGIYSENFEEDYACAPDIVSVHAEDPEIIRRYPERPPEAEVRAIKKALEAAKKLKKPLHICHV 210 (408)
T ss_pred HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 67888877632303466506578799999865997899579978884489999999999999999999984996999945
Q ss_pred HHHHHHHHHHHHHHHHCCC-CCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHH-HHHHHHHHHCCCCCCEEEEEC-CC
Q ss_conf 0233357999853100036-75331121464023443210352020233221133-322333321056671798307-86
Q gi|254780215|r 131 RSADDDMAAILQEEMKKGP-FPFVIHCFSSSQKLADICLELGGYISFTGMITFPK-YDALRAIARGIPMDRVLVETD-SP 207 (262)
Q Consensus 131 r~a~~~~l~iL~~~~~~~~-~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~-~~~~~e~v~~iPldriLlETD-sP 207 (262)
--+ +.++++.+....+. .-+..|...=+.+.. +.|-++-++|.+--+. .+.+.+.++. .| .+=|| +|
T Consensus 211 Ss~--~~l~~I~~a~~~~vt~Et~ph~L~l~~~~~----~~~~~~k~~PPLRs~~dr~aL~~~l~~--Id--~i~SDH~P 280 (408)
T PRK04250 211 STK--DGLKEILKSNLPWVSFEVTPHHLFLTRKDY----ERNPLLKVYPPLRSEEDRRALWENFSR--IP--IIASDHAP 280 (408)
T ss_pred CCH--HHHHHHHHHCCCCEEEEEEHHHHHCCHHHH----CCCCCEEECCCCCCHHHHHHHHHHHCC--CC--EEEECCCC
T ss_conf 889--999999984179839998122644783775----756874978999978889999986268--88--89836888
Q ss_pred CCCCCCCCCCC---CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 67877768875---88244999999999872899899999999999998425
Q gi|254780215|r 208 YIVPVSCQGKR---NEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 208 ~l~p~~~r~~~---n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
+.....-.+.. .--..++...+ +..-..++.+++.+.+..|--++||.
T Consensus 281 ~~~e~K~~~~~G~~glEt~lpl~~~-~v~~g~isl~~lv~~~s~nPAki~gl 331 (408)
T PRK04250 281 HTLEDKEAGAAGLPGLETEVALLLD-AANKGMITLKDIVEKMHINPARIFGI 331 (408)
T ss_pred CCHHHHCCCCCCCCHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHCHHHHHCC
T ss_conf 8978834477898708889999999-99817988999999974275996497
No 84
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=96.53 E-value=0.02 Score=36.83 Aligned_cols=136 Identities=15% Similarity=0.089 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHH-----------HHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf 67899998766420442033000233357999-----------8531000367533112146402344321035202023
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAI-----------LQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT 177 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~i-----------L~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~ 177 (262)
.+.++...++|.++++|+.+|.-....|+-.. |.+..--++.-...||---+.+.++.+.+.|..++.+
T Consensus 204 ~~~l~~~~~~a~~~~~~~~~HlaE~~~e~~~~~~~~g~~~v~~l~~~GlL~~~~~~aH~v~l~d~ei~~la~~g~~v~hc 283 (442)
T PRK07203 204 DAGLEKCREAVKGTGRGLHIHVAEGLYDVSDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSKDEIDLLNETDTFVVHN 283 (442)
T ss_pred HHHHHHHHHHHHHCCCCEEEEHHCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEC
T ss_conf 99999999999864994775030370889999987199999999844888999688725169999999999839847988
Q ss_pred CCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHH
Q ss_conf 32211333---22333321056671798307866787776887588244999999999872899----899999999999
Q gi|254780215|r 178 GMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVS----YEDLMEETTKNA 250 (262)
Q Consensus 178 g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~----~eei~~~~~~N~ 250 (262)
|.....-+ ..++++++. -=++-|=||++- . ..-.-.+++..+.+....+ ..++....+.|.
T Consensus 284 P~Sn~~lg~G~~p~~~~~~~--Gv~vgLGTDg~~--~--------dm~~emr~a~~~~r~~~~d~~~~~~~~~~~at~~g 351 (442)
T PRK07203 284 PESNMGNAVGYNPVLSMIKN--GILLGLGTDGYT--S--------DMFESMKVANFKHKHALKDGGPLWPESFAMLFENN 351 (442)
T ss_pred CHHHHHCCCCCCCHHHHHHC--CCCEEEECCCCC--C--------CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 10264267788889999977--997899689987--6--------79999999999975523798878099999999999
Q ss_pred HHHHHH
Q ss_conf 998425
Q gi|254780215|r 251 LKLFSK 256 (262)
Q Consensus 251 ~~~f~~ 256 (262)
-+..++
T Consensus 352 a~~~~~ 357 (442)
T PRK07203 352 NEIASR 357 (442)
T ss_pred HHHHHH
T ss_conf 999976
No 85
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=96.48 E-value=0.084 Score=32.71 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=83.5
Q ss_pred CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHH--------HH----HHHHHHHHHCCCCCCC--CCCCCCC
Q ss_conf 91686138887565226899999999869989999167987--------78----9999999855723321--1244544
Q gi|254780215|r 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVK--------DF----VPLIKLCQDYPSSIFC--SVGTHPC 66 (262)
Q Consensus 1 M~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~--------~~----~~~~~l~~~~p~~i~~--a~GiHP~ 66 (262)
|.+|.|.|.....-..+..+.+++|.+.|...+..+-..+. .. .....+.+.|.-.|+. -+++.|-
T Consensus 1 ~~~D~H~HT~~sdg~~~~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~G~E~~~~~~ 80 (237)
T COG1387 1 MKIDLHTHTVFSDGEATPEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYDIKILIGIEVDILPD 80 (237)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
T ss_conf 98432125664367789999999999739965999636644345776889999999999998644840476567875178
Q ss_pred CCCC-----------------------C-CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 3344-----------------------6-788998853100133321004467755332211102467899998766420
Q gi|254780215|r 67 HAHE-----------------------E-NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRIT 122 (262)
Q Consensus 67 ~~~~-----------------------~-~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~ 122 (262)
.--+ . .....+.+.....++.+-.||=.|+.... ......-....++.+++|.+.
T Consensus 81 ~~~d~~~~~~~~lD~vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 159 (237)
T COG1387 81 GSLDFLDEILKELDYVIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLG-RIDRGAYKEDIEELIELAEKN 159 (237)
T ss_pred CCCCCCHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCEEE-EECCCCCHHHHHHHHHHHHHH
T ss_conf 7756445467436959999715876663699999999999738875477268875132-322452057899999999985
Q ss_pred CCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCC
Q ss_conf 442033000233357999853100036753311214640234432103520202332
Q gi|254780215|r 123 GIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGM 179 (262)
Q Consensus 123 ~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~ 179 (262)
+..+-|++|... ...+.+.++.+.+.|++|+++..
T Consensus 160 g~aleins~~~~----------------------~~~~~~~~~~~~e~G~~~~i~tD 194 (237)
T COG1387 160 GKALEINSRPGR----------------------LDPNSEILRLARELGVKLAIGTD 194 (237)
T ss_pred CCEEEECCCCCC----------------------CCCCHHHHHHHHHCCCEEEEECC
T ss_conf 968985388566----------------------67609999999971957997355
No 86
>PRK09228 guanine deaminase; Provisional
Probab=96.35 E-value=0.11 Score=31.96 Aligned_cols=138 Identities=15% Similarity=0.042 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHC-CCCCEEECHHHHHHH-------------HHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEE
Q ss_conf 7899998766420-442033000233357-------------99985310003675331121464023443210352020
Q gi|254780215|r 110 VVFLRHIEASRIT-GIPLVIHSRSADDDM-------------AAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYIS 175 (262)
Q Consensus 110 ~vF~~ql~lA~e~-~~pv~iH~r~a~~~~-------------l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S 175 (262)
+.++..-++|.++ +.++..|+-....|+ ++++.+..--.+.-...||---+.+.++.+.+.|..++
T Consensus 210 e~l~~~~~la~~~~~~~i~~HlaE~~~E~~~~~~l~~~~~~~l~~~~~~GlL~~~~~~aH~v~l~d~ei~~la~~g~~v~ 289 (429)
T PRK09228 210 EQLEAAGALAREHPDVYVQTHLSENLDEIAWVKELFPEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAETGAAIA 289 (429)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
T ss_conf 99999999998779977883304676799999997278875102677628877880576466067799999874397510
Q ss_pred CCCCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
Q ss_conf 23322113332---2333321056671798307866787776887588244999999999872--899899999999999
Q gi|254780215|r 176 FTGMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEK--DVSYEDLMEETTKNA 250 (262)
Q Consensus 176 ~~g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~--~~~~eei~~~~~~N~ 250 (262)
.+|.....-.. .++++.+. -=++-+=||++--. ...+......+..+++.. .++..++.+..+.|.
T Consensus 290 ~~P~Sn~~lg~g~~p~~~l~~~--Gv~v~LGTD~~~~~-------s~~~~~~m~~a~~~~~~~~~~lt~~eaL~~ATi~G 360 (429)
T PRK09228 290 FCPTSNLFLGSGLFDLKRAWAA--GVRVGLATDVGGGT-------SFSMLQTMNEAYKVAQLQGYRLSPFQAFYLATLGG 360 (429)
T ss_pred ECHHHHHHHCCCCCCHHHHHHC--CCCEEEECCCCCCC-------CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 1632688745888878999746--99379963789999-------81699999999999712699999999999999999
Q ss_pred HHHHHH
Q ss_conf 998425
Q gi|254780215|r 251 LKLFSK 256 (262)
Q Consensus 251 ~~~f~~ 256 (262)
-+..|.
T Consensus 361 AraLGl 366 (429)
T PRK09228 361 ARALGL 366 (429)
T ss_pred HHHHCC
T ss_conf 998489
No 87
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.27 E-value=0.053 Score=34.03 Aligned_cols=207 Identities=19% Similarity=0.237 Sum_probs=90.0
Q ss_pred EEEEECCCC----C-HHHHCCHHHHHHHHHHCCCCEEEEECCCHH-----HHHH----HHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 168613888----7-565226899999999869989999167987-----7899----9999985572332112445443
Q gi|254780215|r 2 LIDTHCHLL----L-PDFDEDRHDVIMRAHQANVLKMIAIAIKVK-----DFVP----LIKLCQDYPSSIFCSVGTHPCH 67 (262)
Q Consensus 2 ~iD~H~HL~----~-~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~-----~~~~----~~~l~~~~p~~i~~a~GiHP~~ 67 (262)
|||.|||+- + +...+.--.++..|..+||..+|+++.... .... +.++-... ...-.-+-+-|-.
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~-~~~aidl~v~pGQ 79 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEIL-KKEAIDLKVLPGQ 79 (254)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHCCCCEECCCC
T ss_conf 945013466787889875899999999999757607951333247766891999999999999888-8626782661686
Q ss_pred CCCCCHHHHHHHHHH----CCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC-HHHHHHHHHHHH
Q ss_conf 344678899885310----013332100446775533221110246789999876642044203300-023335799985
Q gi|254780215|r 68 AHEENEVLVDELVCL----ASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS-RSADDDMAAILQ 142 (262)
Q Consensus 68 ~~~~~~~~~~~l~~l----~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~-r~a~~~~l~iL~ 142 (262)
--..+++.++.+.+- +++.+..-| |--. +..+...-.-+|+-|+. -=.|++.|- |.
T Consensus 80 EIrIt~~vl~~l~~g~I~tindskYlLI-EF~~----~~v~~ya~~lf~elq~k----Gi~PIIAHPERn---------- 140 (254)
T COG4464 80 EIRITGDVLDDLDKGIILTINDSKYLLI-EFPM----NHVPRYADQLFFELQSK----GIIPIIAHPERN---------- 140 (254)
T ss_pred EEEECHHHHHHHHCCCCCCCCCCCEEEE-ECCC----CCCHHHHHHHHHHHHHC----CCEEEEECHHHH----------
T ss_conf 6897508887876284340336634999-7468----86224599999999977----950366462567----------
Q ss_pred HHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCC-CCC--HHHHHHHHHHHHC---CCCCCEEEEECCCCCCCCCCCC
Q ss_conf 310003675331121464023443210352020233-221--1333223333210---5667179830786678777688
Q gi|254780215|r 143 EEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTG-MIT--FPKYDALRAIARG---IPMDRVLVETDSPYIVPVSCQG 216 (262)
Q Consensus 143 ~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g-~i~--~~~~~~~~e~v~~---iPldriLlETDsP~l~p~~~r~ 216 (262)
+.+.-++..+..+++.|+|+-++. .+. |-| ++++..-. ..|-. .+-+|+-.. +
T Consensus 141 ------------~~i~kn~~~lyeLid~ga~sQvts~Sl~GlfGK--~ikK~a~~~iE~~L~h-FiASDAHn~------~ 199 (254)
T COG4464 141 ------------RAIQKNPYLLYELIDKGAYSQVTSSSLAGLFGK--KIKKFALQLIEANLVH-FIASDAHNV------D 199 (254)
T ss_pred ------------HHHHHCHHHHHHHHHCCCCEEECHHHHHHHHHH--HHHHHHHHHHHCCCCE-EEECCCCCC------C
T ss_conf ------------888859699999985562214225767766658--8999999999746312-540334335------7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 75882449999999998728998999999999999984
Q gi|254780215|r 217 KRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254 (262)
Q Consensus 217 ~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f 254 (262)
++ |-........+.+ ..-.+..+...+|+..+.
T Consensus 200 ~R--~f~~~ea~~~~~k---~~gs~~~~~fi~Na~llv 232 (254)
T COG4464 200 KR--PFHMQEAFHLVTK---KDGSELPEKFIENAELLV 232 (254)
T ss_pred CC--CCCHHHHHHHHHH---HHHHHHHHHHHHCHHHHH
T ss_conf 88--9338999999987---663433899875789874
No 88
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=96.26 E-value=0.12 Score=31.65 Aligned_cols=232 Identities=16% Similarity=0.170 Sum_probs=126.1
Q ss_pred EEEEECCCCC----H--HHHCCHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHHHCCC-CCCCCCCCC---CCCCC
Q ss_conf 1686138887----5--652268999999998699899991--6798778999999985572-332112445---44334
Q gi|254780215|r 2 LIDTHCHLLL----P--DFDEDRHDVIMRAHQANVLKMIAI--AIKVKDFVPLIKLCQDYPS-SIFCSVGTH---PCHAH 69 (262)
Q Consensus 2 ~iD~H~HL~~----~--~~~~d~~~~i~~a~~~gv~~~i~~--~~~~~~~~~~~~l~~~~p~-~i~~a~GiH---P~~~~ 69 (262)
|||.|.|=.. . ...+.+..+.+...+.|+..++.. +.+.+.-.++++-...+-. ..--.+|+| ||...
T Consensus 54 fID~hihG~gG~~~~D~~~~~~l~~i~~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP~ls~ 133 (380)
T COG1820 54 FIDLHIHGGGGADFMDAGSVETLETMAEAHLRHGTTSFLPTLITASLEKIKAALRAIREAIAKGGAQILGIHLEGPFLSP 133 (380)
T ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCH
T ss_conf 78975337674133676478999999998662174224201035999999999999999985468836899841675687
Q ss_pred ------------CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE-ECHHHHHH
Q ss_conf ------------46788998853100133321004467755332211102467899998766420442033-00023335
Q gi|254780215|r 70 ------------EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVI-HSRSADDD 136 (262)
Q Consensus 70 ------------~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~i-H~r~a~~~ 136 (262)
..+.+.++++...... -+.- +- ..|-..+ -..++....+.+-.+++ |+--.+++
T Consensus 134 ~kkGAh~~~~ir~~~~~~~~~~~~~a~g-~i~~---vT------lAPE~~~---~~e~i~~l~~~giivs~GHS~Atye~ 200 (380)
T COG1820 134 EKKGAHNPEYIRPPDPEELEQLIAAADG-LIKL---VT------LAPELDG---TKELIRLLANAGIVVSIGHSNATYEQ 200 (380)
T ss_pred HHCCCCCHHHCCCCCHHHHHHHHHHCCC-CEEE---EE------ECCCCCC---CHHHHHHHHHCCEEEEECCCCCCHHH
T ss_conf 5546998899079899999999874468-4699---99------8878888---89999999868939971575254999
Q ss_pred HHHHHHHHHHCCCCCCCCEECCCCHHHHHH-------HHCC-CCEEECC--CCCCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 799985310003675331121464023443-------2103-5202023--32211333223333210566717983078
Q gi|254780215|r 137 MAAILQEEMKKGPFPFVIHCFSSSQKLADI-------CLEL-GGYISFT--GMITFPKYDALRAIARGIPMDRVLVETDS 206 (262)
Q Consensus 137 ~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~-------~l~~-g~y~S~~--g~i~~~~~~~~~e~v~~iPldriLlETDs 206 (262)
+.+-++. + ...+-|.|++-...--+ .++. +.|.++= |.=.. ..-++-+.|.-+.|||++=|||
T Consensus 201 ~~~a~~~----G-a~~~THlfNaMs~l~hREPGvvGA~L~~~~~~~eiIaDG~HVh--P~~~~ia~~~kg~~~i~LVTDa 273 (380)
T COG1820 201 ARAAFEA----G-ATFVTHLFNAMSGLHHREPGVVGAALDNPDVYAEIIADGVHVH--PAAIRLALKAKGGDKIVLVTDA 273 (380)
T ss_pred HHHHHHC----C-CCEEEEECCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCC--HHHHHHHHHCCCCCEEEEEECC
T ss_conf 9999970----8-6369860147888788898610434227974899982675069--9999999861588649999715
Q ss_pred CCCCCCCC--------------CCC--C-------CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 66787776--------------887--5-------8824499999999987289989999999999999842
Q gi|254780215|r 207 PYIVPVSC--------------QGK--R-------NEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 207 P~l~p~~~--------------r~~--~-------n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~ 255 (262)
|.+... ++. + ..-..+..-++.+-+.-+++.+|..+-...|--+.+|
T Consensus 274 --m~a~G~~dg~y~lgg~~V~v~~g~~~~~~GtLAGS~Ltm~~avrn~v~~~~~~~~eAv~maS~~PA~~lg 343 (380)
T COG1820 274 --MAAAGLPDGEYILGGQTVTVADGARRLEDGTLAGSTLTMDEAVRNLVEWGGISLAEAVRMASLNPAKALG 343 (380)
T ss_pred --CCCCCCCCCCEEECCEEEEEECCEEECCCCCEEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf --5647898851887887899978978878996642225699999999997489999999884134798809
No 89
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=96.22 E-value=0.068 Score=33.30 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHH-----------HHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf 67899998766420442033000233357-----------9998531000367533112146402344321035202023
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRSADDDM-----------AAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT 177 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~-----------l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~ 177 (262)
.+.++..-++|.++++|+.+|+-....|+ ++.|.+..--++.-...||---+.+.++.+.+.|..++.+
T Consensus 203 ~~~l~~~~~~a~~~~~~~~~Hl~E~~~e~~~~~~~~G~~pv~~l~~~GlL~~~~~~aH~v~l~~~ei~lla~~G~~vahc 282 (441)
T TIGR03314 203 DAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELLNETDTFVVHN 282 (441)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHCCCEEEEC
T ss_conf 99999999998755991886311441889999987099889999852888999567447669999999999829828877
Q ss_pred CCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHH
Q ss_conf 32211333---22333321056671798307866787776887588244999999999872899----899999999999
Q gi|254780215|r 178 GMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVS----YEDLMEETTKNA 250 (262)
Q Consensus 178 g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~----~eei~~~~~~N~ 250 (262)
|....+-. ..++++++. -=++=|=||++- . ..-.-.+.+..+.+....+ ..++....+.|.
T Consensus 283 P~Sn~~lg~G~~p~~~~l~~--Gv~v~LGTDg~~--~--------dm~~~mr~a~~~~r~~~~~~~~~~~~~~~~~~~~g 350 (441)
T TIGR03314 283 PESNMGNAVGYNPVLRMFKN--GILLGLGTDGYT--S--------DMFESLKFANFKHKDAGGDLNAAWPESPAMLFENN 350 (441)
T ss_pred HHHHHHCCCCCCCHHHHHHC--CCCEEEECCCCC--C--------CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 35564257899988999978--998899898986--1--------69999999999977636997667479999999999
Q ss_pred HHHHHH
Q ss_conf 998425
Q gi|254780215|r 251 LKLFSK 256 (262)
Q Consensus 251 ~~~f~~ 256 (262)
-+..++
T Consensus 351 ~~~~~~ 356 (441)
T TIGR03314 351 NEIAER 356 (441)
T ss_pred HHHHHH
T ss_conf 999975
No 90
>TIGR03179 gua_deam guanine deaminase. This enzyme converts guanine to xanthine in the catabolism of guanine. Seed members were included by virtue of their proximity to other genes of the guanine/xanthine/urate/allantoate catabolic pathway. The guanine deaminase in E. coli has been characterized. Eukaryotic sequences were not included in the seed and fall below trusted to this model.
Probab=96.18 E-value=0.13 Score=31.37 Aligned_cols=215 Identities=13% Similarity=0.034 Sum_probs=107.7
Q ss_pred HHHHHCCCCEEEEECCCH-HHHHHHHHHHHHCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHH----CCCCCCC-EEC
Q ss_conf 999986998999916798-778999999985572332112445----443344678899885310----0133321-004
Q gi|254780215|r 23 MRAHQANVLKMIAIAIKV-KDFVPLIKLCQDYPSSIFCSVGTH----PCHAHEENEVLVDELVCL----ASHPRVV-AIG 92 (262)
Q Consensus 23 ~~a~~~gv~~~i~~~~~~-~~~~~~~~l~~~~p~~i~~a~GiH----P~~~~~~~~~~~~~l~~l----~~~~~~~-aIG 92 (262)
.++.+.|+..+...+... ...+...+-+....-....+.++- |....+..+..++....+ ...+++. +++
T Consensus 120 ~e~l~~G~TT~~~~~~~~~~~~d~~~~aa~~~g~R~v~g~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 199 (427)
T TIGR03179 120 DELLRNGTTTALVFGSVHKQSVDAFFEEAEARNLRMIAGKVMMDRNAPDYLRDTAESGYDDSKALIARWHGKGRLHYAVT 199 (427)
T ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99997697568763144756678999999981970897544415799803205899999999999998548885268984
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCEEECHHHHHHH-------------HHHHHHHHHCCCCCCCCEECC
Q ss_conf 467755332211102467899998766420-442033000233357-------------999853100036753311214
Q gi|254780215|r 93 ETGLDRYHNAHTIEEQKVVFLRHIEASRIT-GIPLVIHSRSADDDM-------------AAILQEEMKKGPFPFVIHCFS 158 (262)
Q Consensus 93 EiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~-~~pv~iH~r~a~~~~-------------l~iL~~~~~~~~~~~i~H~Fs 158 (262)
.-+ ..+..+ +.++.--++|+++ +.++-+|+.....++ ++.+.+...-++.-...||--
T Consensus 200 ---p~~--~~~~s~---e~l~~~~~~a~~~~~~~~~~H~ae~~~e~~~~~~~~~~~~~~~~~~~~~GlLg~~~~~aH~v~ 271 (427)
T TIGR03179 200 ---PRF--APTSTP---EQLEAAGELLREHPDVFMQTHLSENLDEIAWVRELFPEARDYLDVYDRYGLLGPRSVLAHAIH 271 (427)
T ss_pred ---CCC--CCCCCH---HHHHHHHHHHHHCCCCEEEEHHHCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHEEEC
T ss_conf ---675--885789---999999999986689757742523521689999973999502335776098766422010032
Q ss_pred CCHHHHHHHHCCCCEEECCCCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH--HHHHHHHH
Q ss_conf 6402344321035202023322113332---233332105667179830786678777688758824499--99999998
Q gi|254780215|r 159 SSQKLADICLELGGYISFTGMITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVV--NTAKALAK 233 (262)
Q Consensus 159 G~~~~~~~~l~~g~y~S~~g~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~--~~~~~iA~ 233 (262)
-+.+.++.+.+.|..++.+|.....-.. .++++.+. . =++-|=||+.- . +...++. ..+.+++.
T Consensus 272 l~d~ei~~la~~g~~v~~~P~sn~~lg~g~~p~~~l~~a-G-V~v~LGTD~~~---~------~~~~~~~~m~~a~~~~~ 340 (427)
T TIGR03179 272 LSDRELRRLAETGSSVAFCPTSNLFLGSGLFPLRKAEEH-G-VRVALGTDVGG---G------TSFSMLRTMNEAYKVQQ 340 (427)
T ss_pred CCHHHHHHHHHCCCEEEECHHHHHHHCCCCCCHHHHHHC-C-CEEEEECCCCC---C------CCHHHHHHHHHHHHHHH
T ss_conf 788899999875980887542688846788469999865-9-86999407888---9------98799999999999986
Q ss_pred HH--CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 72--899899999999999998425
Q gi|254780215|r 234 EK--DVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 234 i~--~~~~eei~~~~~~N~~~~f~~ 256 (262)
.. .++..++.+..+.|.-|.+|.
T Consensus 341 ~~~~~l~~~e~L~~ATi~gAraLGl 365 (427)
T TIGR03179 341 LQGEALSPFQSLYLATLGGARALDL 365 (427)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 2789999999999999999998499
No 91
>pfam01979 Amidohydro_1 Amidohydrolase family. This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyse the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <= D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included.
Probab=95.88 E-value=0.18 Score=30.46 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=65.6
Q ss_pred HHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHH--H
Q ss_conf 87664204420330002333579998531000367533112146402344321035202023322113332233332--1
Q gi|254780215|r 116 IEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIA--R 193 (262)
Q Consensus 116 l~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v--~ 193 (262)
...+...++++.+|...+......+.. ....+.||...+.+.+..+...+.+.+..+..........+... .
T Consensus 149 ~~~~~~~~~~~~~h~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (307)
T pfam01979 149 TEEAEKLGLLVHIHAAEASGEVNAILG------GVDLLAHCLHLDDEAIELLKEAGSGIAHCPLSNESILHRGGRFSLMS 222 (307)
T ss_pred HHHHHCCCCEEEEEECCCCHHHHHHHC------CCEEEEEEEECCHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCCCCC
T ss_conf 776541695799997576146788750------65057655311267999999739946323443133332332012321
Q ss_pred CCCC-CCEEEEECCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0566-71798307866787776887---58824499999999987289989999999999999842568
Q gi|254780215|r 194 GIPM-DRVLVETDSPYIVPVSCQGK---RNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKIS 258 (262)
Q Consensus 194 ~iPl-driLlETDsP~l~p~~~r~~---~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~~ 258 (262)
..+. ...+-++..+... ...++. ...+............-.+++.+++.+..+.|.-+.+|.-+
T Consensus 223 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~aT~n~A~~lgl~~ 290 (307)
T pfam01979 223 GDAQGIGELGSGGARLAR-LADKGGVVGLGTDGAGLNGKDFYLDPDGLSPIEALRMATINPAKALGLDD 290 (307)
T ss_pred CCCCCCCCCCCCCCCCHH-HHHHCCCCEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 111122313445443378-99845773203212667899874425799999999999999999968999
No 92
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=95.74 E-value=0.21 Score=30.11 Aligned_cols=137 Identities=9% Similarity=0.005 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHHH-----------HHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf 678999987664204420330002333579-----------998531000367533112146402344321035202023
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRSADDDMA-----------AILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT 177 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l-----------~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~ 177 (262)
.+.++.-.++|++++.|+.+|+-....|+- +.|.+...-++.-.+.||--=+.+.++.+.+.|..++.+
T Consensus 215 ~e~l~~~~~~A~~~~~~ih~HlaE~~~E~~~~~~~~G~~pv~~L~~~GlL~~~~~~aH~v~l~d~di~lLa~~G~~Vahc 294 (457)
T PRK09229 215 PDQLAAVLALADADDGPVHIHIAEQQKEVDDCLAWSGARPVEWLLDHAPVDARWCLVHATHLTDAETAALARSGAVAGLC 294 (457)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEC
T ss_conf 99999999999844996145405987899999999689848889747767888589986349989999999539938978
Q ss_pred CCCCHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH---HHHHHH---------HCCCHHHH
Q ss_conf 32211333---2233332105667179830786678777688758824499999---999987---------28998999
Q gi|254780215|r 178 GMITFPKY---DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTA---KALAKE---------KDVSYEDL 242 (262)
Q Consensus 178 g~i~~~~~---~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~---~~iA~i---------~~~~~eei 242 (262)
|....+-+ -.+.++++. -=++=|=|||... +....-.+.+ ++++.. ..++.+++
T Consensus 295 P~SN~~LgsGiaPv~~~l~a--Gv~vgLGTDsn~~---------~d~~~emr~~~~~~rl~~~~~~~~~~~~~~~~a~~~ 363 (457)
T PRK09229 295 PTTEANLGDGIFPAVDYLAA--GGRFGIGSDSHVS---------IDLAEELRLLEYGQRLRDRRRNVLAAAAQGSVGRRL 363 (457)
T ss_pred CHHHHHCCCCCCCHHHHHHC--CCCEEEECCCCCC---------CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 25476505888889999877--9968997688866---------798999999999999983222356787655749999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999998425
Q gi|254780215|r 243 MEETTKNALKLFSK 256 (262)
Q Consensus 243 ~~~~~~N~~~~f~~ 256 (262)
.+.-+.|.-+.+|+
T Consensus 364 l~mAT~~GAraLG~ 377 (457)
T PRK09229 364 FDAALAGGAQALGR 377 (457)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998298
No 93
>PRK05588 histidinol-phosphatase; Provisional
Probab=95.72 E-value=0.21 Score=30.05 Aligned_cols=123 Identities=16% Similarity=0.166 Sum_probs=62.8
Q ss_pred CEEEEECCCCC-HHHHCCHHHHHHHHHHCCCCEEEEECCCH-----------HHHHHHHHHHHHCCC-CCCC--CCCCCC
Q ss_conf 91686138887-56522689999999986998999916798-----------778999999985572-3321--124454
Q gi|254780215|r 1 MLIDTHCHLLL-PDFDEDRHDVIMRAHQANVLKMIAIAIKV-----------KDFVPLIKLCQDYPS-SIFC--SVGTHP 65 (262)
Q Consensus 1 M~iD~H~HL~~-~~~~~d~~~~i~~a~~~gv~~~i~~~~~~-----------~~~~~~~~l~~~~p~-~i~~--a~GiHP 65 (262)
|++|.|+|... ..-....++.+++|.+.|+.-+ . +... .+.....+..+++.+ .+.. -+|+-|
T Consensus 1 M~~D~H~HT~~s~da~~~~ee~v~~Ai~~Gl~~i-~-TdH~d~~~~~~~~~~~d~~~y~~~~~~~~~~~i~~GiE~g~~~ 78 (256)
T PRK05588 1 MMFDTHIHTEFSTDSKMKIEEAIKKAKKNNLGII-I-TEHMDLNLPDKNKFCFDIPSYFKEYSKYRNNKLLLGIELGMEK 78 (256)
T ss_pred CCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEE-E-ECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 9747636899989987769999999998699889-9-6688889998543456999999999998547864579968377
Q ss_pred CCCCCCCHHHHHHHHHHCCCCC----CCEECCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHCCC-CCEEEC
Q ss_conf 4334467889988531001333----21004467755---33221110246789999876642044-203300
Q gi|254780215|r 66 CHAHEENEVLVDELVCLASHPR----VVAIGETGLDR---YHNAHTIEEQKVVFLRHIEASRITGI-PLVIHS 130 (262)
Q Consensus 66 ~~~~~~~~~~~~~l~~l~~~~~----~~aIGEiGLD~---~~~~~~~e~Q~~vF~~ql~lA~e~~~-pv~iH~ 130 (262)
... +...+.+... .-+- +=.|+.++.++ +...+..+...+.|+..++.+...++ -|+=|-
T Consensus 79 ~~~----~~~~~~l~~~-~fDyvIGSvH~i~~~d~~~~~~~~~~~~~~~~~~Yf~~~~~~~~~~~~fdvlgHl 146 (256)
T PRK05588 79 DLI----EENKEIINKY-EFDYIIGSIHLINGVDLYLEEKYKDRSKEEAYHIYFENMLKCLEKYDFIDSLGHI 146 (256)
T ss_pred CCH----HHHHHHHHCC-CCCEEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 858----9999987348-9887998677627868514666548999999999999999999835998663252
No 94
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=95.66 E-value=0.11 Score=31.90 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=69.1
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECC-----------CHHH--HHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 686138887565226899999999869989999167-----------9877--899999998557233211244544334
Q gi|254780215|r 3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAI-----------KVKD--FVPLIKLCQDYPSSIFCSVGTHPCHAH 69 (262)
Q Consensus 3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~-----------~~~~--~~~~~~l~~~~p~~i~~a~GiHP~~~~ 69 (262)
||+|.|+-.++ .++.|..+|+..++--|+ ++.. ..+.++-++.+|-++ |+.=.--.
T Consensus 138 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGPa~Gt~atT~TpG~~~i~~ml~a~d~~P~N~----g~lGKGn~ 206 (573)
T PRK13206 138 IDCHVHLICPQ-------IVDEALGAGITTIIGGGTGPAEGSKATTVTPGAWHLARMLEALDGWPVNI----ALLGKGNT 206 (573)
T ss_pred EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEE----EEEECCCC
T ss_conf 36889844888-------89999866970674587678777775101797789999998503178105----56423667
Q ss_pred CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH-----HHHHHHHHH
Q ss_conf 467889988531001333210044677553322111024678999987664204420330002-----333579998
Q gi|254780215|r 70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS-----ADDDMAAIL 141 (262)
Q Consensus 70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~-----a~~~~l~iL 141 (262)
...+...++++ -|-+||--+ +++-.--.+...-|..|.+++..|.||+-. --+++++-+
T Consensus 207 s~~~~l~Eqi~----------AGa~GlKiH---EDWGaTpa~Id~~L~vAde~DvQvaiHTDtLNEsGfvedTi~Ai 270 (573)
T PRK13206 207 VSPEAMWEQLR----------GGAAGFKLH---EDWGTTPAAIDACLTVADAAGVQVALHSDTLNEAGFVEDTLAAI 270 (573)
T ss_pred CCHHHHHHHHH----------HCCCEEECC---CCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 88178999997----------252332102---21378878999887777863926897448765444136678875
No 95
>PRK07572 cytosine deaminase; Validated
Probab=95.62 E-value=0.23 Score=29.82 Aligned_cols=218 Identities=13% Similarity=0.090 Sum_probs=95.6
Q ss_pred HHHCCCCEEE---EE-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCC
Q ss_conf 9986998999---91-6798778999999985572332112445443344678899885310013332100446775533
Q gi|254780215|r 25 AHQANVLKMI---AI-AIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYH 100 (262)
Q Consensus 25 a~~~gv~~~i---~~-~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~ 100 (262)
+...|...+- .+ ...+..++..+++.+++.+.+-.-+---|...--..+...+.+.+.+... +-.|| |++++.
T Consensus 106 a~a~Gtt~iRtHvdv~d~~l~~~ea~~~~r~~~~~~~~lqiVAfpq~g~~~~~~~~~ll~~al~~G-ad~vG--G~p~~~ 182 (425)
T PRK07572 106 AVARGLLAIRSHVDVCDPRLLAVEALLEVRERVAPYLDLQLVAFPQDGVLRSPGALANLKRALDMG-VDVVG--GIPHFE 182 (425)
T ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHCC-CCEEE--CCCCCC
T ss_conf 997596525513625797313899999999972432212046526643335845899999999628-97884--546876
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHH---HHHHHHH----HHHHCCCCCCCCEECCCCHH-------HHH
Q ss_conf -22111024678999987664204420330002333---5799985----31000367533112146402-------344
Q gi|254780215|r 101 -NAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADD---DMAAILQ----EEMKKGPFPFVIHCFSSSQK-------LAD 165 (262)
Q Consensus 101 -~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~---~~l~iL~----~~~~~~~~~~i~H~FsG~~~-------~~~ 165 (262)
...+. .+....-.+||.++++||-+|+-...+ ..++.+- +..-.+ .-.+=|||+-+.. .+.
T Consensus 183 ~t~~d~---~~~l~~~f~lA~~~g~~iDiHldE~~d~~~~~l~~la~~t~~~G~~g-rVt~sH~~~L~~~~~~~~~~~i~ 258 (425)
T PRK07572 183 RTMADG---AASVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLGLQG-RVAGSHLTSMHSMDNYYVSKLIP 258 (425)
T ss_pred CCCHHH---HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-CEEECCCCCCCCCCHHHHHHHHH
T ss_conf 661438---99999999999974997587346877715789999999999828988-55613631113499999999999
Q ss_pred HHHCCCCEEECCCCCC-HHHH-----------HHHHHHHHCCCCCCEEEEECC---CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 3210352020233221-1333-----------223333210566717983078---667877768875882449999999
Q gi|254780215|r 166 ICLELGGYISFTGMIT-FPKY-----------DALRAIARGIPMDRVLVETDS---PYIVPVSCQGKRNEPAYVVNTAKA 230 (262)
Q Consensus 166 ~~l~~g~y~S~~g~i~-~~~~-----------~~~~e~v~~iPldriLlETDs---P~l~p~~~r~~~n~P~~i~~~~~~ 230 (262)
.+.+.|.-+--.|... |-.+ ..++++.+ - -=++-+=||+ ||- ||. ...|..+...+-.
T Consensus 259 ~lAeagi~vv~~P~~Nl~L~gR~~~~p~~RGvtpv~eL~~-a-GV~ValGtDnv~D~~~---p~G--~~DmLe~a~l~~~ 331 (425)
T PRK07572 259 LMAEAGVAAIANPLINITLQGRHDTYPKRRGMTRVPELMA-A-GINVAFGHDCVMDPWY---SLG--SGDMLEVAHMGLH 331 (425)
T ss_pred HHHHCCCCEEECCCCCCEECCCCCCCCCCCCCCCHHHHHH-C-CCEEEEECCCCCCCCC---CCC--CCCHHHHHHHHHH
T ss_conf 9998299555256555230366788898888889999997-6-9859990688878775---678--8768999999999
Q ss_pred HHHHHCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 9987289-9899999999999998425
Q gi|254780215|r 231 LAKEKDV-SYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 231 iA~i~~~-~~eei~~~~~~N~~~~f~~ 256 (262)
++.+..- +.+...+.++.|.-+..|.
T Consensus 332 ~~~l~~~~~~~~~~~~vT~~~A~~lGl 358 (425)
T PRK07572 332 VAQMTGQDAMRACFDAVTVNPARIMGL 358 (425)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 874688899999999973378885199
No 96
>PRK13985 UreB urease subunit beta; Provisional
Probab=95.51 E-value=0.12 Score=31.77 Aligned_cols=115 Identities=19% Similarity=0.304 Sum_probs=69.0
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC-----------CCHHH--HHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 68613888756522689999999986998999916-----------79877--899999998557233211244544334
Q gi|254780215|r 3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA-----------IKVKD--FVPLIKLCQDYPSSIFCSVGTHPCHAH 69 (262)
Q Consensus 3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~-----------~~~~~--~~~~~~l~~~~p~~i~~a~GiHP~~~~ 69 (262)
||+|.|+-.++ .++.|..+|+..++--| +++.. ..+.++.++.+|-++ |+.-.--.
T Consensus 132 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGPa~Gt~att~TpG~~~i~~ml~a~d~~P~N~----g~~gKGn~ 200 (568)
T PRK13985 132 IDTHIHFISPQ-------QIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNL----GFLAKGNA 200 (568)
T ss_pred EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE----EEEECCCC
T ss_conf 26576643888-------89999864865774487578777677676897789999997500487015----77532666
Q ss_pred CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH-----HHHHHHHHHH
Q ss_conf 46788998853100133321004467755332211102467899998766420442033000-----2333579998
Q gi|254780215|r 70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR-----SADDDMAAIL 141 (262)
Q Consensus 70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r-----~a~~~~l~iL 141 (262)
...+...++++ -|-+||--+ +++-.--.+...-|..|.+++..|.||+- +.-+++++-+
T Consensus 201 s~~~~L~Eqi~----------AGa~GlKiH---EDWGaTpa~Id~~L~vAde~DvQvaiHTDtLNEsGfvEdT~~Ai 264 (568)
T PRK13985 201 SNDASLADQIE----------AGAIGFKIH---EDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAI 264 (568)
T ss_pred CCHHHHHHHHH----------HCCCCCCCC---CCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 88077999997----------242513343---11378878999998888874926897458866544036578875
No 97
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=95.41 E-value=0.27 Score=29.33 Aligned_cols=221 Identities=14% Similarity=0.091 Sum_probs=124.5
Q ss_pred HHHHHHHCCCCEEEEECC---CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC-------CC-
Q ss_conf 999999869989999167---9877899999998557233211244544334467889988531001333-------21-
Q gi|254780215|r 21 VIMRAHQANVLKMIAIAI---KVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPR-------VV- 89 (262)
Q Consensus 21 ~i~~a~~~gv~~~i~~~~---~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~-------~~- 89 (262)
.++...+.||+.+...+. ...++....++.....-.++..+.+|.....+ ...+.+..-..... +.
T Consensus 215 a~~~l~s~GiT~v~d~~~~~~~~~~~~~~r~~~~~~~l~~rv~~~l~~~~~~~---~~~~~~~~~~~~~~~~~g~~K~f~ 291 (535)
T COG1574 215 AARELNSLGITGVHDMAGYQGYYADYEAYRALAAGGELPVRVALLLFTEDLKE---ERLDLLRQTGAKGLLQGGGVKLFA 291 (535)
T ss_pred HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHH---HHHHHCCCCCCCCEEECCCEEEEE
T ss_conf 99999856972887451013535379999998745861489985225641336---777513557775546427658998
Q ss_pred --EECCCCCCC---CCCCC----CCHHHHHHHHHHHHHHHHCCCCCEEECH--HHHHHHHHHHHHHHHCC----CCCCCC
Q ss_conf --004467755---33221----1102467899998766420442033000--23335799985310003----675331
Q gi|254780215|r 90 --AIGETGLDR---YHNAH----TIEEQKVVFLRHIEASRITGIPLVIHSR--SADDDMAAILQEEMKKG----PFPFVI 154 (262)
Q Consensus 90 --aIGEiGLD~---~~~~~----~~e~Q~~vF~~ql~lA~e~~~pv~iH~r--~a~~~~l~iL~~~~~~~----~~~~i~ 154 (262)
+.||--..- |.+.. ......+-|++.++-|.+.++|+.+|+- .|-+.+++.+.+..+.. ...-|.
T Consensus 292 Dgslg~rtA~l~~~y~d~~~~~G~~l~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~LdafE~~~~~~~~~~~r~rie 371 (535)
T COG1574 292 DGSLGERTALLAAPYADGPGPSGELLLTEEELEELVRAADERGLPVAVHAIGDGAVDAALDAFEKARKKNGLKGLRHRIE 371 (535)
T ss_pred ECCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 57877411201586557889888635499999999999997799179998166999999999998765357766776154
Q ss_pred EECCCCHHHHHHHHCCCCEEECCCCCCHHH------HHHHHHHHHCCCCCC-------EEEEECCCCCCCCCCC------
Q ss_conf 121464023443210352020233221133------322333321056671-------7983078667877768------
Q gi|254780215|r 155 HCFSSSQKLADICLELGGYISFTGMITFPK------YDALRAIARGIPMDR-------VLVETDSPYIVPVSCQ------ 215 (262)
Q Consensus 155 H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~------~~~~~e~v~~iPldr-------iLlETDsP~l~p~~~r------ 215 (262)
|.=.-+.++++++.++|.-+|+.+...+.- .---...-...|... +-.=||+|-.++.|..
T Consensus 372 H~~~v~~~~i~R~~~Lgv~~svQP~f~~~~~~~~~~rlG~~r~~~~~p~~~ll~~G~~la~gSD~Pv~~~dP~~~i~~AV 451 (535)
T COG1574 372 HAELVSPDQIERFAKLGVIASVQPNFLFSDGEWYVDRLGEERASRSYPFRSLLKAGVPLAGGSDAPVEPYDPWLGIYAAV 451 (535)
T ss_pred EEEECCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 65406876789999639458613630025226889765056553177199999789867326889998887389999998
Q ss_pred ------CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf ------87588244999999999872899899999999999998425
Q gi|254780215|r 216 ------GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 216 ------~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
|..+.|.. .+++++....-+.|+-.+-+.
T Consensus 452 tr~~~~g~~~~~~~------------~L~~~eAL~~yT~~~A~a~~~ 486 (535)
T COG1574 452 TRKTPGGRVLGPEE------------RLTREEALRAYTEGGAYASGA 486 (535)
T ss_pred CCCCCCCCCCCCCC------------CCCHHHHHHHHHHHHHHHHHC
T ss_conf 28887787776002------------567999999986304786204
No 98
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=95.39 E-value=0.27 Score=29.29 Aligned_cols=96 Identities=16% Similarity=0.121 Sum_probs=59.1
Q ss_pred CCCCCEECCCCHH------HHHHHHCCCCEEECC--CCCCH---HHH------HHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 7533112146402------344321035202023--32211---333------223333210566717983078667877
Q gi|254780215|r 150 FPFVIHCFSSSQK------LADICLELGGYISFT--GMITF---PKY------DALRAIARGIPMDRVLVETDSPYIVPV 212 (262)
Q Consensus 150 ~~~i~H~FsG~~~------~~~~~l~~g~y~S~~--g~i~~---~~~------~~~~e~v~~iPldriLlETDsP~l~p~ 212 (262)
.-++-|=+++... .++.+.++|.+|-|+ +.+.- .|+ .++..+.|... =.+++-||+=. |.
T Consensus 107 VDIL~~p~~~r~~~~~~hv~ak~A~e~gV~lEI~~~~~l~~~~~~R~~~i~n~~~l~~l~r~yg-~pivisS~A~s--~l 183 (237)
T PRK00912 107 VDILNHPYLNRKDSGLNHVLAKLAAENNVAIEIILRDILHSRGGRRARTLSQIRANLALHRKYD-FPLVLSSGAMS--CY 183 (237)
T ss_pred CCEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHCC-CCEEEECCCCC--HH
T ss_conf 8788465434688663389999999749079996524433672168999987999999998669-98899679998--44
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 76887588244999999999872899899999999999998425
Q gi|254780215|r 213 SCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 213 ~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
..| -++-+-.++...|++.+++.+.+..|.+++.-+
T Consensus 184 dlR--------~p~d~~~l~~~~Gl~~~~a~~als~~p~~il~~ 219 (237)
T PRK00912 184 DLR--------SPKEMIALAEVFGLEEDEALEALTSVPEKIIEK 219 (237)
T ss_pred HHC--------CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 417--------999999999985999999999999989999984
No 99
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=95.23 E-value=0.13 Score=31.38 Aligned_cols=115 Identities=15% Similarity=0.227 Sum_probs=68.5
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECC-----------CHHHH--HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 686138887565226899999999869989999167-----------98778--99999998557233211244544334
Q gi|254780215|r 3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAI-----------KVKDF--VPLIKLCQDYPSSIFCSVGTHPCHAH 69 (262)
Q Consensus 3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~-----------~~~~~--~~~~~l~~~~p~~i~~a~GiHP~~~~ 69 (262)
||+|.|+-.++ .++.|..+|+..++--|+ ++..| .+.++-.+.+|-++ |+.=.--.
T Consensus 136 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGPa~Gt~att~TpG~~~i~~ml~a~d~~P~N~----g~~gKGn~ 204 (572)
T PRK13309 136 IDSHIHLISPQ-------QAYHALSNGVATFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEGLPVNV----GILGKGNS 204 (572)
T ss_pred CCCEEECCCHH-------HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE----EEEECCCC
T ss_conf 32100004778-------89999856876875686678767666324797799999997401277104----56313667
Q ss_pred CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH-----HHHHHHHHHH
Q ss_conf 46788998853100133321004467755332211102467899998766420442033000-----2333579998
Q gi|254780215|r 70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR-----SADDDMAAIL 141 (262)
Q Consensus 70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r-----~a~~~~l~iL 141 (262)
...+...++++ -|-+||--+ +++-.--.+...-|..|.+++..|.||+- +.-+++++-+
T Consensus 205 s~~~~L~eqi~----------AGa~GlKiH---EDWGaTPa~Id~~L~vAde~DvQvaiHTDTLNE~GfvEdTi~Ai 268 (572)
T PRK13309 205 YGRGPLLEQAI----------AGVVGYKVH---EDWGATANALRHALRMADEVDIQVSVHTDSLNECGYVEDTIDAF 268 (572)
T ss_pred CCHHHHHHHHH----------HCCCCCCCC---CCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 88077999997----------242545454---43479889999887778863926897458766545004358873
No 100
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=95.22 E-value=0.16 Score=30.86 Aligned_cols=115 Identities=20% Similarity=0.268 Sum_probs=69.9
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC-----------CCHHH--HHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 68613888756522689999999986998999916-----------79877--899999998557233211244544334
Q gi|254780215|r 3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA-----------IKVKD--FVPLIKLCQDYPSSIFCSVGTHPCHAH 69 (262)
Q Consensus 3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~-----------~~~~~--~~~~~~l~~~~p~~i~~a~GiHP~~~~ 69 (262)
||+|.|+-.++ .++.|..+|+..++--| +++.. ..+.++-++.+|-++ |+.=.--.
T Consensus 132 iDtHvHfi~Pq-------q~~~Al~sGiTT~iGGGtGPa~Gt~att~tpG~~~i~~ml~a~d~~P~N~----g~~gKGn~ 200 (568)
T PRK13207 132 IDTHIHFICPQ-------QIEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAADAFPVNI----GFLGKGNA 200 (568)
T ss_pred EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE----EEEECCCC
T ss_conf 16655305887-------89999855866874587688766656666897799999998654077213----56633667
Q ss_pred CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH-----HHHHHHHHH
Q ss_conf 467889988531001333210044677553322111024678999987664204420330002-----333579998
Q gi|254780215|r 70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS-----ADDDMAAIL 141 (262)
Q Consensus 70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~-----a~~~~l~iL 141 (262)
...+...++++ -|-+||-- .+++-.--.+...-|..|.+++..|.||+-. .-+++++-+
T Consensus 201 s~~~~l~eqi~----------AGa~GlKi---HEDwGatpa~Id~~L~vad~~DvQvaiHTDtLNEsGfvEdT~~Ai 264 (568)
T PRK13207 201 SLPEALEEQIE----------AGAIGLKL---HEDWGATPAAIDNCLSVADEYDVQVAIHTDTLNESGFVEDTIAAF 264 (568)
T ss_pred CCCHHHHHHHH----------HCCEEEEE---ECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCEECCHHHHH
T ss_conf 88278999986----------18257885---000378888998786541224736999706665566031236662
No 101
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=95.12 E-value=0.33 Score=28.75 Aligned_cols=226 Identities=14% Similarity=0.115 Sum_probs=114.2
Q ss_pred EEEEECCCCCHHH------------HCCHHHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 1686138887565------------2268999999998699899991679--8778999999985572332112445443
Q gi|254780215|r 2 LIDTHCHLLLPDF------------DEDRHDVIMRAHQANVLKMIAIAIK--VKDFVPLIKLCQDYPSSIFCSVGTHPCH 67 (262)
Q Consensus 2 ~iD~H~HL~~~~~------------~~d~~~~i~~a~~~gv~~~i~~~~~--~~~~~~~~~l~~~~p~~i~~a~GiHP~~ 67 (262)
-||+|+|+-.+.+ +...++........||.+.|.|-.+ -.+..-.++..++++.. ...+++=|-.
T Consensus 2 aiD~H~Hv~dp~~~~~~~~~~~~p~~~~~~dl~~~~~~~Gi~r~VlVQ~s~~g~Dn~~ll~al~~~~~~-~~~v~v~~~~ 80 (263)
T cd01311 2 AVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIYGADNSNLLDALASNGKA-RGGATVDPRT 80 (263)
T ss_pred CEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCC-EEEEEEECCC
T ss_conf 785512456899888888677899998999999999980996599978887745389999999856994-7999980798
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH-HHHHHHHHHHHHH
Q ss_conf 344678899885310013332100446775533221110246789999876642044203300023-3357999853100
Q gi|254780215|r 68 AHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA-DDDMAAILQEEMK 146 (262)
Q Consensus 68 ~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a-~~~~l~iL~~~~~ 146 (262)
+ .+..++.+... .+++|- +........ . ..-+.+..+-+.+++..+-+|.... ..++.+.+++.
T Consensus 81 ~---~d~~l~~l~~~----GvrGvR---~n~~~~~~~-~--~~~~~~~~~ri~~~gw~~~l~~~~~~l~~~~~~l~~~-- 145 (263)
T cd01311 81 T---TDAELKEMHDA----GVRGVR---FNFLFGGVD-N--KDELDEIAKRAAELGWHVQVYFDAVDLPALLPFLQKL-- 145 (263)
T ss_pred C---CHHHHHHHHHC----CCCCEE---EECCCCCCC-C--HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC--
T ss_conf 9---97999998765----897137---725677778-9--8999999999987498645203711069999999978--
Q ss_pred CCCCCCCC-EECCCC---------HHHHHHHHCC-CCEEECCCCCCHHH--------HHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 03675331-121464---------0234432103-52020233221133--------32233332105667179830786
Q gi|254780215|r 147 KGPFPFVI-HCFSSS---------QKLADICLEL-GGYISFTGMITFPK--------YDALRAIARGIPMDRVLVETDSP 207 (262)
Q Consensus 147 ~~~~~~i~-H~FsG~---------~~~~~~~l~~-g~y~S~~g~i~~~~--------~~~~~e~v~~iPldriLlETDsP 207 (262)
+.++|+ |+=.-. .+.+.++++. ++|+=+||.-+... ..-.+.++.. ..+|+|-=||-|
T Consensus 146 --p~~vViDH~g~p~~~~g~~~~~~~~l~~L~~~~~v~vKlSg~~r~s~~~~~~~d~~p~~~~l~~~-gp~RlmWGSDWP 222 (263)
T cd01311 146 --PVAVVIDHFGRPDVTKGVDGAEFAALLKLIEEGNVWVKVSGPYRLSVKQEAYADVIAFARQIVAA-APDRLVWGTDWP 222 (263)
T ss_pred --CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCCC
T ss_conf --99899856778898878779889999999966986999645455158898866899999999986-999489979999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHH
Q ss_conf 678777688758824499999999987289989999-999999999
Q gi|254780215|r 208 YIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLM-EETTKNALK 252 (262)
Q Consensus 208 ~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~-~~~~~N~~~ 252 (262)
... +......| +....++.+.+. .+-+++. +++..|-.|
T Consensus 223 h~~---~~~~~~~p-d~~~ll~~~~~w--~~d~~~~~~ilv~NP~r 262 (263)
T cd01311 223 HPR---LREPDPMP-DDGALLRLIPSW--APDAQLQRKNLVDNPAR 262 (263)
T ss_pred CCC---CCCCCCCC-CHHHHHHHHHHH--CCCHHHHHHHHHHCHHH
T ss_conf 999---87678999-989999999988--69999999998539421
No 102
>pfam01244 Peptidase_M19 Membrane dipeptidase (Peptidase family M19).
Probab=95.06 E-value=0.34 Score=28.64 Aligned_cols=144 Identities=15% Similarity=0.077 Sum_probs=90.0
Q ss_pred HHHHHHH-HHHHHHCCCCCEE-EC-HHHHHHHHHHHHH--HHHCCCCCC-CCEECCCCHHHHHHHHCCCCEEECCCCCCH
Q ss_conf 6789999-8766420442033-00-0233357999853--100036753-311214640234432103520202332211
Q gi|254780215|r 109 KVVFLRH-IEASRITGIPLVI-HS-RSADDDMAAILQE--EMKKGPFPF-VIHCFSSSQKLADICLELGGYISFTGMITF 182 (262)
Q Consensus 109 ~~vF~~q-l~lA~e~~~pv~i-H~-r~a~~~~l~iL~~--~~~~~~~~~-i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~ 182 (262)
..-|-++ ++-..+++..|=+ |+ .++..+++++-+. ...+...+. .=|.=+=+-++++.+.+.|-.++++....|
T Consensus 156 Lt~~G~~~v~~mn~lGmivDlSH~s~~~~~d~~~~s~~PviaSHSn~ral~~h~RNl~De~i~aia~~gGviGi~~~~~f 235 (316)
T pfam01244 156 LTRFGKEVVREMNRLGILIDLSHLSERTFWDVLELSKAPVVASHSNARALCDHPRNLTDEQLKAIAESGGVIGVNFYPAF 235 (316)
T ss_pred CCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHCCCCEEEECCCHHHCCCCCCCCCHHHHHHHHHCCCEEEEEECHHH
T ss_conf 88779999999997696776487988999999997099989978785540588888889999999864987999600643
Q ss_pred HH----------HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 33----------32233332105667179830786678777688758824499999999987289989999999999999
Q gi|254780215|r 183 PK----------YDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALK 252 (262)
Q Consensus 183 ~~----------~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~ 252 (262)
-+ .+.+.-+++.+..|.+=+=||-= .....-.....|+.++.+++.+.+ +|.+.+++.++...|+.|
T Consensus 236 l~~~~~~~i~~~~~Hi~~i~~l~G~dhVgiGsDfd--g~~~~~~gl~~~~~~~~l~~~L~~-rG~se~~i~ki~g~N~lR 312 (316)
T pfam01244 236 LKKDANATIDDVVDHIDYIVDLAGIDHVGLGSDFD--GIGENPEGLEDVSKLPNLTAELLR-RGYSEAEIEKILGGNWLR 312 (316)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCC--CCCCCCCCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHH
T ss_conf 28999999999999999999970987179884578--999997776898889999999998-698999999998563999
Q ss_pred HHH
Q ss_conf 842
Q gi|254780215|r 253 LFS 255 (262)
Q Consensus 253 ~f~ 255 (262)
+|.
T Consensus 313 vl~ 315 (316)
T pfam01244 313 VLR 315 (316)
T ss_pred HHC
T ss_conf 842
No 103
>TIGR01792 urease_alph urease, alpha subunit; InterPro: IPR005848 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies , but each holoenzyme consists of four structural domains : three structural domains and a nickel-binding catalytic domain common to amidohydrolases . Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organization as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organization (IPR008221 from INTERPRO). This entry describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Urease (3.5.1.5 from EC) belongs to MEROPS peptidase family M38 (clan MJ). ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process.
Probab=95.03 E-value=0.1 Score=32.09 Aligned_cols=115 Identities=15% Similarity=0.222 Sum_probs=70.3
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEE-----------ECCCHHHH--HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 686138887565226899999999869989999-----------16798778--99999998557233211244544334
Q gi|254780215|r 3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIA-----------IAIKVKDF--VPLIKLCQDYPSSIFCSVGTHPCHAH 69 (262)
Q Consensus 3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~-----------~~~~~~~~--~~~~~l~~~~p~~i~~a~GiHP~~~~ 69 (262)
||+|.|--. .+.++.|.++||+.++- ++|++..| .+.++-.+..|-+ +|+-=
T Consensus 140 iDtHVHyi~-------P~~~~~AL~~GITT~~GGGTGpadGt~atT~tpG~w~~~~ml~a~dglPiN----~G~~g---- 204 (605)
T TIGR01792 140 IDTHVHYIS-------PQQVQAALDSGITTLIGGGTGPADGTKATTCTPGPWYLHRMLQAADGLPIN----IGFTG---- 204 (605)
T ss_pred CEEEEEEEC-------CCHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCC----CCEEE----
T ss_conf 404678606-------437889852898799727435467875454277379999999975467510----12352----
Q ss_pred CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC--HH---HHHHHHHHH
Q ss_conf 4678899885310013332100446775533221110246789999876642044203300--02---333579998
Q gi|254780215|r 70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS--RS---ADDDMAAIL 141 (262)
Q Consensus 70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~--r~---a~~~~l~iL 141 (262)
+......+.|.+.+. =|=|||= -+++|=.==.+.+.=|..|.+|+.-|.||+ -+ --++|+.-+
T Consensus 205 KG~~s~~~al~E~i~------AGA~GlK---vHEDWGATp~aId~aL~vAd~yDVqvA~HtDTLNE~GfVE~TiaA~ 272 (605)
T TIGR01792 205 KGSASGPEALVEQIE------AGACGLK---VHEDWGATPAAIDNALSVADEYDVQVAVHTDTLNESGFVEDTIAAF 272 (605)
T ss_pred ECCCCCHHHHHHHHH------HHHCEEC---CCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 045453237999998------6100002---1236577688999999875306802888234225533167799871
No 104
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=94.96 E-value=0.19 Score=30.38 Aligned_cols=105 Identities=14% Similarity=0.203 Sum_probs=64.3
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECC-------CH--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 686138887565226899999999869989999167-------98--778999999985572332112445443344678
Q gi|254780215|r 3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAI-------KV--KDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE 73 (262)
Q Consensus 3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~-------~~--~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~ 73 (262)
||+|.|+-.++ .++.|..+|+..++--|+ ++ ....+.++-++.+|-++ |+.=.--....+
T Consensus 136 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGp~att~Tpg~~~i~~ml~a~d~~P~N~----g~lgKGn~s~~~ 204 (569)
T PRK13308 136 IDVHVHFDSAG-------LVDHALASGITTMIGGGLGPTVGIDSGGPFNTGRFLQAAEAWPVNF----GFLGRGNSSDPA 204 (569)
T ss_pred EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE----EEEECCCCCCCH
T ss_conf 04566633877-------8999986186232578757876566898899999997644177314----551036668807
Q ss_pred HHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
Q ss_conf 8998853100133321004467755332211102467899998766420442033000
Q gi|254780215|r 74 VLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR 131 (262)
Q Consensus 74 ~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r 131 (262)
...++++ -|-+||--+. ++-.--.+...-|..|.+++..|.||+-
T Consensus 205 ~L~eqi~----------AGa~GlKiHE---DWGaTPaaId~~L~vAd~~DvQvaiHTD 249 (569)
T PRK13308 205 ALIEQVE----------AGVMGLKIHE---DWGAMPAAIDTCLGAADEYDFQVQLHTD 249 (569)
T ss_pred HHHHHHH----------HHHCCCCCCC---CCCCCHHHHHHHHHHHHHHCEEEEEECC
T ss_conf 8999998----------5433133346---5578736666776777763816898517
No 105
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=94.95 E-value=0.37 Score=28.43 Aligned_cols=133 Identities=16% Similarity=0.172 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCC--H----
Q ss_conf 6789999876642044203300023335799985310003675331121464023443210352020233221--1----
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMIT--F---- 182 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~--~---- 182 (262)
.+.+...++.|.+++.++.+|+..... +.... + . ....+.|++.-+.+..+.+.+.|.+++-+.... .
T Consensus 159 ~~~~~~~~~~a~~~g~~v~~H~~~~~~-~~~~~-~---~-G~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 232 (342)
T cd01299 159 EEELRAIVDEAHKAGLYVAAHAYGAEA-IRRAI-R---A-GVDTIEHGFLIDDETIELMKEKGIFLVPTLATYEALAAEG 232 (342)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCHHH-HHHHH-H---H-CCCHHHHHCCCCHHHHHHHHHCCCEEECCHHHHHHHHHHC
T ss_conf 999999999999819946774166389-99999-9---1-9962676504889999999977918945647878877502
Q ss_pred ----------HH----HHHHHHHHHCCC--CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf ----------33----322333321056--67179830786678777688758824499999999987289989999999
Q gi|254780215|r 183 ----------PK----YDALRAIARGIP--MDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEET 246 (262)
Q Consensus 183 ----------~~----~~~~~e~v~~iP--ldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~ 246 (262)
.+ .......++.+- --++.+=||+.... +...+...-+..+.+ .+++..+..+-.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGv~v~lgtD~~~~~--------~~~~~~~~~~~~~~~-~gl~~~eal~~a 303 (342)
T cd01299 233 AAPGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTDAGFPV--------PPHGWNARELELLVK-AGGTPAEALRAA 303 (342)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC--------CCHHHHHHHHHHHHH-CCCCHHHHHHHH
T ss_conf 44577667888888766645799999997799499867888887--------726799999999998-399999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998425
Q gi|254780215|r 247 TKNALKLFSK 256 (262)
Q Consensus 247 ~~N~~~~f~~ 256 (262)
+.|.-+.+|.
T Consensus 304 T~n~A~~lgl 313 (342)
T cd01299 304 TANAAELLGL 313 (342)
T ss_pred HHHHHHHHCC
T ss_conf 9999999689
No 106
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=94.94 E-value=0.21 Score=30.10 Aligned_cols=105 Identities=18% Similarity=0.276 Sum_probs=65.1
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC-----------CCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 68613888756522689999999986998999916-----------7987--7899999998557233211244544334
Q gi|254780215|r 3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA-----------IKVK--DFVPLIKLCQDYPSSIFCSVGTHPCHAH 69 (262)
Q Consensus 3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~-----------~~~~--~~~~~~~l~~~~p~~i~~a~GiHP~~~~ 69 (262)
||+|.|+-.++ .++.|..+||..++--| +++. ...+.++-++.+|-++- -+| .--.
T Consensus 132 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGPa~Gt~atT~TpG~~~i~~ml~a~d~~P~N~g-~lg---KGn~ 200 (567)
T cd00375 132 IDTHVHFICPQ-------QIEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADGLPVNIG-FLG---KGNG 200 (567)
T ss_pred EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE-EEE---CCCC
T ss_conf 16788843888-------899998658767635866787777764468977999999986552772135-631---3666
Q ss_pred CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
Q ss_conf 46788998853100133321004467755332211102467899998766420442033000
Q gi|254780215|r 70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR 131 (262)
Q Consensus 70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r 131 (262)
...+...++++ -|-+||--+ ++|-.--.+...-|..|.+++..|.||+-
T Consensus 201 s~~~~l~eqi~----------AGa~GlKiH---EDWGaTpa~Id~~L~vAd~~DvQvaiHTD 249 (567)
T cd00375 201 SSPDALAEQIE----------AGACGLKLH---EDWGATPAAIDTCLSVADEYDVQVAIHTD 249 (567)
T ss_pred CCHHHHHHHHH----------HHHCCCCCC---CCCCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 88578999998----------653401112---22478777888876666650860454305
No 107
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=94.72 E-value=0.42 Score=28.06 Aligned_cols=120 Identities=23% Similarity=0.249 Sum_probs=65.0
Q ss_pred CCCCCEEECHHHH--HHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHH-HHHHHH-------HH
Q ss_conf 0442033000233--3579998531000367533112146402344321035202023322113-332233-------33
Q gi|254780215|r 122 TGIPLVIHSRSAD--DDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFP-KYDALR-------AI 191 (262)
Q Consensus 122 ~~~pv~iH~r~a~--~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~-~~~~~~-------e~ 191 (262)
-..|+.+|+-.+. ...++...++ +....+.|+..+ ....+.+.+.|...+.++..... +....+ .+
T Consensus 191 ~~~~~~~h~~~~~~~~~~~~~~~~~---~~~~~~~h~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (359)
T cd01309 191 GEIPVRIHAHRADDILTAIRIAKEF---GIKITIEHGAEG-YKLADELAKHGIPVIYGPTLTLPKKVEEVNDAIDTNAYL 266 (359)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHC---CCCEEEEECCHH-HHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9972999967678999999999864---984799733018-779999997499689684201331136554004558999
Q ss_pred HHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 210566717983078667877768875882449999999998728998999999999999984256
Q gi|254780215|r 192 ARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKI 257 (262)
Q Consensus 192 v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~ 257 (262)
++. .--++.+=||.|... . ..+...+..+.+ .+++.++..+..+.|.-+++|.-
T Consensus 267 ~~~-~gv~~~~~tD~~~~~-~---------~~~~~~~~~~~~-~Gl~~~eal~~aT~n~A~~lgl~ 320 (359)
T cd01309 267 LKK-GGVAFAISSDHPVLN-I---------RNLNLEAAKAVK-YGLSYEEALKAITINPAKILGIE 320 (359)
T ss_pred HHH-CCCEEEEECCCCCCH-H---------HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 981-995499966887541-7---------599999999998-09999999999999999994998
No 108
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.64 E-value=0.44 Score=27.93 Aligned_cols=127 Identities=17% Similarity=0.105 Sum_probs=80.3
Q ss_pred HHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHC--CCCE-EECCCCCCHHHHHH--
Q ss_conf 999876642044203300023335799985310003675331121464023443210--3520-20233221133322--
Q gi|254780215|r 113 LRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLE--LGGY-ISFTGMITFPKYDA-- 187 (262)
Q Consensus 113 ~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~--~g~y-~S~~g~i~~~~~~~-- 187 (262)
++.++-|.+.++||-+|.-++.+ +.-..+ . ....+-|..--+.+.+..+.+ .|-. -...+.-.|.-...
T Consensus 223 ~~~l~~a~~~g~~v~~HA~~~~g-~~~A~~-~----g~~s~~H~~~ld~~~~~~~a~~~~g~~~~~l~p~~~~~l~e~~~ 296 (406)
T COG1228 223 RAVLAAALKAGIPVKAHAHGADG-IKLAIR-L----GAKSAEHGTLLDHETAALLAEKGAGTPVPVLLPRTKFELRELDY 296 (406)
T ss_pred HHHHHHHHHCCCCEEEEECCCCH-HHHHHH-H----CCCEEHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCCH
T ss_conf 99999999779935999726536-999998-2----78766233105612098886513698664436303455432110
Q ss_pred --HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf --3333210566717983078667877768875882449999999998728998999999999999984256
Q gi|254780215|r 188 --LRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKI 257 (262)
Q Consensus 188 --~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~ 257 (262)
.+.+.+. -=++-+=||.|..+. ..++.......++.- ++.+|..+.++-|+-+..|.-
T Consensus 297 ~~~~~l~~~--GV~vai~TD~~~~~~---------~~~l~~~m~l~~~~g-mtp~EaL~a~T~naA~alG~~ 356 (406)
T COG1228 297 KPARKLIDA--GVKVAIGTDHNPGTS---------HGSLALEMALAVRLG-MTPEEALKAATINAAKALGLA 356 (406)
T ss_pred HHHHHHHHC--CCEEEEECCCCCCCC---------HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCC
T ss_conf 669999986--996999778997640---------446999999999829-999999999999999981986
No 109
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=94.43 E-value=0.49 Score=27.62 Aligned_cols=135 Identities=19% Similarity=0.171 Sum_probs=91.2
Q ss_pred HHHHHHHHHCCCCCEE-EC-HHHHHHHHHHHHHHHHCCCCCCCC----------EECCCCHHHHHHHHCCCCEEECCCCC
Q ss_conf 9998766420442033-00-023335799985310003675331----------12146402344321035202023322
Q gi|254780215|r 113 LRHIEASRITGIPLVI-HS-RSADDDMAAILQEEMKKGPFPFVI----------HCFSSSQKLADICLELGGYISFTGMI 180 (262)
Q Consensus 113 ~~ql~lA~e~~~pv~i-H~-r~a~~~~l~iL~~~~~~~~~~~i~----------H~FsG~~~~~~~~l~~g~y~S~~g~i 180 (262)
+.-++.+++++.+|=+ |+ -+...|++++= + .+++. |-=+=+-++++.+.+.|-.++++...
T Consensus 152 k~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s-----~--~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvIgv~~~~ 224 (313)
T COG2355 152 KELVREMNELGIIIDLSHLSDKTFWDVLDLS-----K--APVVASHSNARALVDHPRNLSDEQLKAIAETGGVIGVNFIP 224 (313)
T ss_pred HHHHHHHHHCCCEEEECCCCCCCHHHHHHCC-----C--CCEEEECCCCHHCCCCCCCCCHHHHHHHHHCCCEEEEEEEH
T ss_conf 9999999865977872235872299998545-----8--86687437724105888898899999999649979998645
Q ss_pred CHHHH---H--HHH-------HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 11333---2--233-------33210566717983078667877768875882449999999998728998999999999
Q gi|254780215|r 181 TFPKY---D--ALR-------AIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTK 248 (262)
Q Consensus 181 ~~~~~---~--~~~-------e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~ 248 (262)
.|-+. . .+. -++..+..|.+-+=||-=+. +.+..|-. .+..++.....+.+ +|.+.+++.++.++
T Consensus 225 ~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~-~~~p~gle-d~~~l~~l~~~L~~-~G~~e~~i~~i~~~ 301 (313)
T COG2355 225 AFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGG-TGPPDGLE-DVGKLPNLTAALIE-RGYSEEEIEKIAGE 301 (313)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC-CCCCHHHC-CHHHHHHHHHHHHH-CCCCHHHHHHHHHH
T ss_conf 22368877899989999999999985384216864465678-88861012-75677999999997-69999999999987
Q ss_pred HHHHHHHHH
Q ss_conf 999984256
Q gi|254780215|r 249 NALKLFSKI 257 (262)
Q Consensus 249 N~~~~f~~~ 257 (262)
|+.|+|.+.
T Consensus 302 N~lRV~~~~ 310 (313)
T COG2355 302 NWLRVLKEV 310 (313)
T ss_pred HHHHHHHHH
T ss_conf 699999997
No 110
>PTZ00124 adenosine deaminase; Provisional
Probab=94.19 E-value=0.55 Score=27.29 Aligned_cols=127 Identities=18% Similarity=0.183 Sum_probs=80.1
Q ss_pred HHHHHHHHHHCCCCCEEECHHH-----HHHHHHHHHHHHHCCCCCCCCEECC--CCHHHHHHHHCCCCEEECCCCCCHHH
Q ss_conf 9999876642044203300023-----3357999853100036753311214--64023443210352020233221133
Q gi|254780215|r 112 FLRHIEASRITGIPLVIHSRSA-----DDDMAAILQEEMKKGPFPFVIHCFS--SSQKLADICLELGGYISFTGMITFPK 184 (262)
Q Consensus 112 F~~ql~lA~e~~~pv~iH~r~a-----~~~~l~iL~~~~~~~~~~~i~H~Fs--G~~~~~~~~l~~g~y~S~~g~i~~~~ 184 (262)
|..-.+.|++.++++.+|+=.+ .+++.+.+... +. .=|=|+.. .+.+.++.+.+.+.-+-+-++.....
T Consensus 208 f~~af~~Ar~~Gl~~T~HAGE~~~p~~i~~v~~ai~~l--~a--~RIGHGv~~~~Dp~L~~~l~e~~I~LEvCPtSNv~t 283 (362)
T PTZ00124 208 FKDIFDRLREAGVNLSVHAGEDVTPPNLNELYAAILDL--GV--KRIGHGIRVAESQELIDRVKEKDILLEVCPISNVLL 283 (362)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH--CC--CCCCCCEECCCCHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 89999999986995435567557854599999999980--97--043575340779899999986595489867655334
Q ss_pred -------HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf -------3223333210566717983078667877768875882449999999998728998999999999999984
Q gi|254780215|r 185 -------YDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254 (262)
Q Consensus 185 -------~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f 254 (262)
.-.++.+.+. -=++-+.||-|-++. .++..=+..+++..|.+.+++.+....-...-|
T Consensus 284 ~~v~~~~~HPi~~l~~~--G~~vtiNTDDp~vf~----------t~L~~Ey~~~~~~fgls~~d~~~l~~nai~asF 348 (362)
T PTZ00124 284 NNSKSMDTHPIRKLYDA--GVKVSVNSDDPGMFL----------TNIHDEYEELYTHLNFTLADFMKMNTWALEKSF 348 (362)
T ss_pred CCCCCCCCCHHHHHHHC--CCEEEEECCCCCCCC----------CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 56698321719999978--996999489930208----------988999999999819599999999999999876
No 111
>PRK00369 pyrC dihydroorotase; Provisional
Probab=94.07 E-value=0.58 Score=27.12 Aligned_cols=221 Identities=16% Similarity=0.094 Sum_probs=103.1
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEECC------CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 1686138887565--226899999999869989999167------98778999999985572332112445443344678
Q gi|254780215|r 2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAIAI------KVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENE 73 (262)
Q Consensus 2 ~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~~~------~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~ 73 (262)
+||.|+|+..+.+ .+|+..--..|...|++.++.+.. +++.+...++.+++. .+.-+|+|.--. +
T Consensus 50 ~ID~HvH~rePG~~~kEd~~sgt~AAaaGGvTtv~~mPnt~P~~~~~~~~~~~~~~~~~~---s~vd~~~~~~v~-~--- 122 (393)
T PRK00369 50 VIDMHVHLRGLKLSYKEDVASATSEAAYGGITLVADMPNTVPPLNTPEAIKEKLAELENY---SRVDYGVYSGVT-K--- 122 (393)
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC---CCCCEEEEEECC-C---
T ss_conf 888044469999876575999999998099489998999999989899999999985648---724689994216-7---
Q ss_pred HHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH-------------HHHHHHH
Q ss_conf 899885310013332100446775533221110246789999876642044203300023-------------3357999
Q gi|254780215|r 74 VLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA-------------DDDMAAI 140 (262)
Q Consensus 74 ~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a-------------~~~~l~i 140 (262)
.++++..+ |..|.-.|.+ +.+. ..+ +++....+..+++|+-+. +.++..+
T Consensus 123 -~~~~l~~l---------g~~g~k~f~~--d~~~-~~~----~~~~~~~~~l~~~HaE~~~~~~~~~~~~r~~~~E~~ai 185 (393)
T PRK00369 123 -EYEEVDKL---------PIAGYKIYPE--DLER-EET----KRVLEKSKKLKILHPEIPLALKGLRRLRRNCWAEIAAL 185 (393)
T ss_pred -CHHHHHHC---------CCCEEEEECC--CCCH-HHH----HHHHHHCCCCEEECCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf -45557646---------6975999888--8878-999----99998679970994788777635255207458999999
Q ss_pred HHHHHHCCCCCCCC-EECCCCHHHHHHHHCCCCEEEC-----------------CCCCCHH-HHHHHHHHHHCCCCCCEE
Q ss_conf 85310003675331-1214640234432103520202-----------------3322113-332233332105667179
Q gi|254780215|r 141 LQEEMKKGPFPFVI-HCFSSSQKLADICLELGGYISF-----------------TGMITFP-KYDALRAIARGIPMDRVL 201 (262)
Q Consensus 141 L~~~~~~~~~~~i~-H~FsG~~~~~~~~l~~g~y~S~-----------------~g~i~~~-~~~~~~e~v~~iPldriL 201 (262)
... .. ..++++ |- .+.+.++.+.+.|...-+ +|.+--+ ..+.+.+.+.. .| .
T Consensus 186 ~~~--~~-~ar~Hi~h~--Ss~e~ir~AK~~G~t~Ev~phhL~l~~e~~~~~kv~PPLR~~~D~~aL~~~l~d--ID--~ 256 (393)
T PRK00369 186 ELV--KG-AANVHITHA--SNPETVRIAKKLGFTVDITPHHLLVDGERDCLSKVNPPIRDYGERLKLLKALFE--VD--A 256 (393)
T ss_pred HHH--HH-CCCEEEEEC--CCHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--CC--E
T ss_conf 998--61-496999936--849999999866990799756840255356673138998997899999987447--78--8
Q ss_pred EEEC-CCCCCCCC---CC----CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8307-86678777---68----87588244999999999872899899999999999998425
Q gi|254780215|r 202 VETD-SPYIVPVS---CQ----GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 202 lETD-sP~l~p~~---~r----~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
+=|| +|+-..+. +. |-..--..++.++..+ .-..++.+.+.+.+..|--++||.
T Consensus 257 IaSDHaPh~~eeK~~~f~~ap~Gi~GlEt~lplll~~V-~~g~lsl~~lv~l~s~nPAki~GL 318 (393)
T PRK00369 257 VASDHAPHSSWEKWMPFEICPPGIAALSFTPPFIYTLV-FKGLLSIERAVSLTSTNPSRILGI 318 (393)
T ss_pred EEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 98178889978815654354687040788999999999-838899999999998879999598
No 112
>TIGR00674 dapA dihydrodipicolinate synthase; InterPro: IPR005263 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue . Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC, IPR005264 from INTERPRO) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Sinorhizobium meliloti protein mosA , which is involved in the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry . Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel. This family represents a subclass of dihydrodipicolinate synthase. ; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process.
Probab=93.15 E-value=0.82 Score=26.11 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCH-------HHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 689999999986998999916798-------778999999985572---3321124454433446788998853100133
Q gi|254780215|r 17 DRHDVIMRAHQANVLKMIAIAIKV-------KDFVPLIKLCQDYPS---SIFCSVGTHPCHAHEENEVLVDELVCLASHP 86 (262)
Q Consensus 17 d~~~~i~~a~~~gv~~~i~~~~~~-------~~~~~~~~l~~~~p~---~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~ 86 (262)
-++.+|+.-..+|+.++|.+||+= ++-.++++.+-+.-+ .|++..| ...+.+.++.. ..+
T Consensus 20 ~Le~li~~~~~~G~da~V~~GTTGEs~TLs~EE~~~~i~~~~~~~~~R~pvIaG~G------sN~T~Eai~l~-~~a--- 89 (288)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVVGTTGESATLSHEEHKKVIEFVVDLVKGRVPVIAGTG------SNATEEAIELT-KFA--- 89 (288)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCC------CCHHHHHHHHH-HHH---
T ss_conf 99999998997079858971355886446888889999999877628778985377------32589999999-999---
Q ss_pred CCCEECCCCCCC------CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE---CHHHH---HHHHHHHHHHHHC-------
Q ss_conf 321004467755------3322111024678999987664204420330---00233---3579998531000-------
Q gi|254780215|r 87 RVVAIGETGLDR------YHNAHTIEEQKVVFLRHIEASRITGIPLVIH---SRSAD---DDMAAILQEEMKK------- 147 (262)
Q Consensus 87 ~~~aIGEiGLD~------~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH---~r~a~---~~~l~iL~~~~~~------- 147 (262)
=++|.|- ||+..+.+-|.+-|++ +|.+-++|++|= +|-+- .|++.-|.+....
T Consensus 90 -----~~~G~dg~L~vtPyYNKP~q~Gl~~HFka---ia~~~~lPiiLYNvPsRTg~~l~peTv~rLA~~~~NI~aiKEa 161 (288)
T TIGR00674 90 -----EKLGVDGFLVVTPYYNKPTQEGLYQHFKA---IAEEVDLPIILYNVPSRTGVSLEPETVKRLAEEPNNIVAIKEA 161 (288)
T ss_pred -----HHCCCCEEECCCCCCCCCCCCHHHHHHHH---HHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEEC
T ss_conf -----86895688458875518882138999999---9987169889842876410178628999973016770688726
Q ss_pred -----------CCCC-CCCEECCCCHHHHHHHHCCCC--EEECCCCCCHHHHHHHHHHHHC
Q ss_conf -----------3675-331121464023443210352--0202332211333223333210
Q gi|254780215|r 148 -----------GPFP-FVIHCFSSSQKLADICLELGG--YISFTGMITFPKYDALRAIARG 194 (262)
Q Consensus 148 -----------~~~~-~i~H~FsG~~~~~~~~l~~g~--y~S~~g~i~~~~~~~~~e~v~~ 194 (262)
...+ --|-=|||+=+..-.++..|. .+|+...+. .+..+|+++.
T Consensus 162 ~g~l~~~~~i~~~~p~~dF~vlsGDD~l~l~~~~~Gg~GVISV~~N~~---P~~~~emv~~ 219 (288)
T TIGR00674 162 TGNLERISEIKAITPDDDFVVLSGDDALTLPILALGGKGVISVTSNVA---PKLMKEMVEN 219 (288)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCEEEEHHHHHH---HHHHHHHHHH
T ss_conf 888899999998668985388847861136999818961673005556---8999999999
No 113
>TIGR01430 aden_deam adenosine deaminase; InterPro: IPR006330 This family includes the experimentally verified adenosine deaminases of mammals and Escherichia coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. ; GO: 0004000 adenosine deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process.
Probab=93.15 E-value=0.82 Score=26.11 Aligned_cols=145 Identities=18% Similarity=0.239 Sum_probs=92.8
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HCCCCCEEECH--HH--H---HHHHHHHHHHHHCCCCCCC
Q ss_conf 01333210044677553322111024678999987664--20442033000--23--3---3579998531000367533
Q gi|254780215|r 83 ASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASR--ITGIPLVIHSR--SA--D---DDMAAILQEEMKKGPFPFV 153 (262)
Q Consensus 83 ~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~--e~~~pv~iH~r--~a--~---~~~l~iL~~~~~~~~~~~i 153 (262)
..+..|+|| |||-.....+- - -.-|.+-.+.|+ +.++++.+|+= .. . .+.++.|+--+ |
T Consensus 165 ~~~~~ivg~---gLagdE~~~ps-~-~~~F~~~f~~Arsl~~Gl~~T~HAGlhE~~g~~~v~~Ald~l~~~R-------I 232 (346)
T TIGR01430 165 YKEQGIVGF---GLAGDERGGPS-S-PEKFVRAFAIARSLELGLKLTVHAGLHELGGPESVREALDDLGATR-------I 232 (346)
T ss_pred HCCCCEEEE---ECCCCCCCCCC-C-HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCC-------C
T ss_conf 347856898---52654668898-8-7789999999876516983563037534577467999998538851-------0
Q ss_pred CEECC--CCHHHHHH-HHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCE-------EEEECCCCCCCCCCCCCCCCHH-
Q ss_conf 11214--64023443-2103520202332211333223333210566717-------9830786678777688758824-
Q gi|254780215|r 154 IHCFS--SSQKLADI-CLELGGYISFTGMITFPKYDALRAIARGIPMDRV-------LVETDSPYIVPVSCQGKRNEPA- 222 (262)
Q Consensus 154 ~H~Fs--G~~~~~~~-~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldri-------LlETDsP~l~p~~~r~~~n~P~- 222 (262)
=|... -+++.+++ +.+.+..|-+=|...+. -..-+-....|+-|+ -|.||-|-.. | +
T Consensus 233 gHG~~~~eDp~L~~rlL~~~~i~le~CP~SN~~--l~~v~~~~~~Pl~~f~~~G~~~~lNsDDPa~f-----~-----~f 300 (346)
T TIGR01430 233 GHGVRALEDPELLKRLLAEEQITLEVCPLSNLA--LGVVKSLAEHPLKRFLEAGVKVTLNSDDPAYF-----G-----SF 300 (346)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHH--CCCCCCCCCHHHHHHHHCCCCEEECCCCCCHH-----H-----HE
T ss_conf 024000148789999998679558875211111--01358865237899886568577448771101-----0-----02
Q ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
Q ss_conf 4999999999872-89989999999999999
Q gi|254780215|r 223 YVVNTAKALAKEK-DVSYEDLMEETTKNALK 252 (262)
Q Consensus 223 ~i~~~~~~iA~i~-~~~~eei~~~~~~N~~~ 252 (262)
+|..-++..++-. +++.+++.+.. +|+.+
T Consensus 301 ~L~~~Y~~~~~~~P~l~~~~~~~l~-~Na~~ 330 (346)
T TIGR01430 301 YLTEEYEIAAKDAPGLTEEELKQLA-RNALE 330 (346)
T ss_pred ECHHHHHHHHHHCCCCCHHHHHHHH-HHHHH
T ss_conf 3078999998745788888999999-98887
No 114
>PRK05985 cytosine deaminase; Provisional
Probab=92.76 E-value=0.93 Score=25.75 Aligned_cols=138 Identities=12% Similarity=0.024 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHCCCCCEEECHHHH-------HHHHHHHHHHHHCCCCCCCCEECCC---CHHHHHHHHCCCCEEECCCCC
Q ss_conf 899998766420442033000233-------3579998531000367533112146---402344321035202023322
Q gi|254780215|r 111 VFLRHIEASRITGIPLVIHSRSAD-------DDMAAILQEEMKKGPFPFVIHCFSS---SQKLADICLELGGYISFTGMI 180 (262)
Q Consensus 111 vF~~ql~lA~e~~~pv~iH~r~a~-------~~~l~iL~~~~~~~~~~~i~H~FsG---~~~~~~~~l~~g~y~S~~g~i 180 (262)
.++.-.++|+++++|+-+|+-... +.+.+........ ..-.+-||+.- +.+.+.+..+.....+++...
T Consensus 193 ~l~~~~~lA~~~g~~i~iH~~e~~~~~~~~~~~~~~~~~~~gl~-g~v~~~H~~~l~~l~~~~~~~~~~~~a~~~v~~~~ 271 (398)
T PRK05985 193 QLDIVFGLAERHGVGIDIHLHEPGELGAFQLELIAARTRALGMQ-GRVAVSHAFCLGDLPERELDRLAARLAEAGVAIMT 271 (398)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEHHHHCCCCCHHHHHHHHHHHHCCCCCEEC
T ss_conf 99999999998599868987577771077999999999982999-99897755541269999999999998529955012
Q ss_pred CHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHH
Q ss_conf 113332---2333321056671798307866787776887588244999999999872899899----999999999998
Q gi|254780215|r 181 TFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYED----LMEETTKNALKL 253 (262)
Q Consensus 181 ~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~ee----i~~~~~~N~~~~ 253 (262)
+.+... .++++.+ -. =++-+=||+.--.-.|+ |.+.+ ...+..++...+...++ ..+..+.|.-|.
T Consensus 272 ~~~~~~~~~pv~~l~~-aG-V~V~LGtDg~~~~~~p~----~~~d~-l~~a~~~~~~~~~~~~~~~~~al~maT~~gAra 344 (398)
T PRK05985 272 NAPGSRPVPPVAALRE-AG-VTVFGGNDGIRDTWWPY----GNGDM-LERAMLIGYRSGFRTDDELEVALDCVTHGGARA 344 (398)
T ss_pred CCCCCCCCCCHHHHHH-CC-CCEEECCCCCCCCCCCC----CCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6876789874999997-69-96896378788877877----88789-999999997528998799999999998999997
Q ss_pred HHH
Q ss_conf 425
Q gi|254780215|r 254 FSK 256 (262)
Q Consensus 254 f~~ 256 (262)
+|.
T Consensus 345 LGl 347 (398)
T PRK05985 345 LGL 347 (398)
T ss_pred CCC
T ss_conf 599
No 115
>PRK08123 histidinol-phosphatase; Reviewed
Probab=92.22 E-value=1.1 Score=25.30 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=43.7
Q ss_pred CEEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEECCC------------------HHH----HHHHHHHHHHCCCC
Q ss_conf 91686138887565--2268999999998699899991679------------------877----89999999855723
Q gi|254780215|r 1 MLIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAIAIK------------------VKD----FVPLIKLCQDYPSS 56 (262)
Q Consensus 1 M~iD~H~HL~~~~~--~~d~~~~i~~a~~~gv~~~i~~~~~------------------~~~----~~~~~~l~~~~p~~ 56 (262)
|..|.|+|-..-.. .+.+++.+++|.+.|+..+..+... ..+ +..+.+|.++|++.
T Consensus 1 m~~D~H~HT~~s~h~~~~~lee~v~~Ai~~Gl~~ig~TdH~p~~~~~~~~~~~~~~~m~~~~~~~Y~~~i~~lkekY~~~ 80 (266)
T PRK08123 1 MKRDGHTHTPFCPHGSKDSLEAYIERAIELGFTEITFTEHAPLPPGFIDPTPRQDSAMAMEQLERYIKELNELKKKYKGQ 80 (266)
T ss_pred CCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99544558899999888759999999998799989974799886433576511023478889999999999999982678
Q ss_pred CCCCCCCCCCCC
Q ss_conf 321124454433
Q gi|254780215|r 57 IFCSVGTHPCHA 68 (262)
Q Consensus 57 i~~a~GiHP~~~ 68 (262)
+-.-+|+==-+.
T Consensus 81 I~I~~GiE~dy~ 92 (266)
T PRK08123 81 IKIRIGLEVDYI 92 (266)
T ss_pred CEEEEEEEECCC
T ss_conf 818998874446
No 116
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=92.22 E-value=0.9 Score=25.85 Aligned_cols=105 Identities=18% Similarity=0.285 Sum_probs=64.3
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC-----------CCHHHH--HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 68613888756522689999999986998999916-----------798778--99999998557233211244544334
Q gi|254780215|r 3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA-----------IKVKDF--VPLIKLCQDYPSSIFCSVGTHPCHAH 69 (262)
Q Consensus 3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~-----------~~~~~~--~~~~~l~~~~p~~i~~a~GiHP~~~~ 69 (262)
||+|.|+-.+ +.++.|..+||..++--| +++..| .+.++-++.+|-++ .-+|= --.
T Consensus 132 iDtHiHfI~P-------qqi~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d~~p~N~-g~lgK---Gn~ 200 (568)
T COG0804 132 IDTHIHFICP-------QQIEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAADGLPMNI-GFLGK---GNA 200 (568)
T ss_pred CCCEEEEECH-------HHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE-EEEEC---CCC
T ss_conf 3212688667-------889999863867886486687777654011587879999998622485356-77624---777
Q ss_pred CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
Q ss_conf 46788998853100133321004467755332211102467899998766420442033000
Q gi|254780215|r 70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR 131 (262)
Q Consensus 70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r 131 (262)
.......++++ -|-|||-.+. +|-.--.+...-|..|.+++.-|.||+-
T Consensus 201 s~~~~L~Eqi~----------aGa~GlKlHE---DWG~TpaaI~~~L~VAD~~DvqVaiHtD 249 (568)
T COG0804 201 SNPAPLAEQIE----------AGAIGLKLHE---DWGATPAAIDTCLSVADEYDVQVAIHTD 249 (568)
T ss_pred CCCHHHHHHHH----------HCCCEEEEEC---CCCCCHHHHHHHHHHHHHHCEEEEEEEC
T ss_conf 89566899986----------0541357611---1489879999887643311637999606
No 117
>PRK09061 D-glutamate deacylase; Validated
Probab=91.94 E-value=1.2 Score=25.09 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=21.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999987289989999999999999842
Q gi|254780215|r 229 KALAKEKDVSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 229 ~~iA~i~~~~~eei~~~~~~N~~~~f~ 255 (262)
.++-+-+.++++++.+.++.|.-++|+
T Consensus 394 ~~vr~~~~lsLe~aV~~~T~~pA~~~~ 420 (496)
T PRK09061 394 EYVRERKAVSLLEALRKCTLMPAQILE 420 (496)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 986636854899999999899999885
No 118
>pfam07969 Amidohydro_3 Amidohydrolase family.
Probab=91.74 E-value=1.2 Score=24.95 Aligned_cols=135 Identities=14% Similarity=0.127 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHH-
Q ss_conf 78999987664204420330002--333579998531000367533112146402344321035202023322113332-
Q gi|254780215|r 110 VVFLRHIEASRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYD- 186 (262)
Q Consensus 110 ~vF~~ql~lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~- 186 (262)
+-+++.++.|.+.+.++-+|+-+ +-+.+++.+...... ...+.||..-+.+.++++.++|...|+.+.-.+....
T Consensus 213 ~~~~~~v~~a~~~G~~v~~Ha~gd~ai~~~l~a~~~~~~~--~~~i~H~~~~~~~~~~~~~~lg~~~~~~p~~~~~~~~~ 290 (392)
T pfam07969 213 EELEELVAAAHAAGLQVRVHASGDAAIDAVLNAYEAVLAD--LGRLIHAGVATTDTIDRAAELGLRADTQPHFLAYDGYW 290 (392)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHH--CCEEEECCCCCHHHHHHHHHCCCCEEECCCEECCCCHH
T ss_conf 9999999999986994799855426799999999997654--68763013389889999998298156113410353046
Q ss_pred --------------HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH-----------HHHHHHCCCHHH
Q ss_conf --------------2333321056671798307866787776887588244999999-----------999872899899
Q gi|254780215|r 187 --------------ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAK-----------ALAKEKDVSYED 241 (262)
Q Consensus 187 --------------~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~-----------~iA~i~~~~~ee 241 (262)
..+.+++ -. =++-+=||+|-..+.|+ .....+- .+..-..+|++|
T Consensus 291 ~~~~~~~~r~~~~~p~~~l~~-~G-v~v~~gsD~pv~~~~P~--------~~~~~a~~r~~~~~~~~~~~~~~~~ls~~e 360 (392)
T pfam07969 291 DRSRLGPERARGSLPIKLLLN-AG-VKVALGSDAPVATYDPW--------SGIGAAVMRRTAEMLEGRVLKPDERLSLEE 360 (392)
T ss_pred HHHCCCHHHHHCCCHHHHHHH-CC-CEEEEECCCCCCCCCHH--------HHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 652242777641344999997-59-88997378988886779--------999998515776678876658256879999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999998425
Q gi|254780215|r 242 LMEETTKNALKLFSK 256 (262)
Q Consensus 242 i~~~~~~N~~~~f~~ 256 (262)
..+..+.|.-+.++.
T Consensus 361 Al~~~T~~~A~~~g~ 375 (392)
T pfam07969 361 ALALYTRGPAYALGL 375 (392)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999999487
No 119
>KOG3968 consensus
Probab=91.40 E-value=1.3 Score=24.72 Aligned_cols=223 Identities=13% Similarity=0.049 Sum_probs=112.5
Q ss_pred HHHHHHHHHHCCCCEEEE-ECCCHHHHHHHHHHHHHCCCCCCCCCCCC--------CCCCCCCCHHHHHHHHHHCC----
Q ss_conf 899999999869989999-16798778999999985572332112445--------44334467889988531001----
Q gi|254780215|r 18 RHDVIMRAHQANVLKMIA-IAIKVKDFVPLIKLCQDYPSSIFCSVGTH--------PCHAHEENEVLVDELVCLAS---- 84 (262)
Q Consensus 18 ~~~~i~~a~~~gv~~~i~-~~~~~~~~~~~~~l~~~~p~~i~~a~GiH--------P~~~~~~~~~~~~~l~~l~~---- 84 (262)
...+++++.++|.+.+.. .+.+.+.....++.+.++..++ .+|.- |....+..+...+.-..+.+
T Consensus 122 ~~~vv~~mL~~GTTt~~~f~~~~~~s~~ll~~~~~~~G~R~--~igkv~m~~~~~~~p~~~~~~E~si~~t~~~i~~~~~ 199 (439)
T KOG3968 122 YQRVVKEMLRAGTTTVEYFSTLHLDSELLLARAAIRAGQRA--LIGKVCMDCNAHAVPKGVETTEESIESTEDLIPKLEK 199 (439)
T ss_pred HHHHHHHHHHCCCEEHHHHHCCCCHHHHHHHHHHHHHCCCE--EEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999975954066664057316789999999727721--5321012168889876613379999999999898876
Q ss_pred --CCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHH---HHHHHH----------HHHCCC
Q ss_conf --33321004467755332211102467899998766420442033000233357---999853----------100036
Q gi|254780215|r 85 --HPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDM---AAILQE----------EMKKGP 149 (262)
Q Consensus 85 --~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~---l~iL~~----------~~~~~~ 149 (262)
.+.+.-+=+++.+- .. -+.+|+.--+||+..++|+.+|--.--+|+ .++..+ +..-.+
T Consensus 200 ~~~~~~~~~vt~~fa~----~c---~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~~~y~~~yd~~~lL~~ 272 (439)
T KOG3968 200 LKREKVNPIVTPRFAA----SC---SKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEKLSYTDVYDKGGLLTE 272 (439)
T ss_pred HCCCCCCCCCCCCCCC----CC---CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHCCCCH
T ss_conf 3347778732655357----77---4046788889988631145556553678899999852201361678987466136
Q ss_pred CCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHH-H--HHHHHHHHHCCCCCCEEEEECC-CCCCCCCCCCCCCCHHHHH
Q ss_conf 7533112146402344321035202023322113-3--3223333210566717983078-6678777688758824499
Q gi|254780215|r 150 FPFVIHCFSSSQKLADICLELGGYISFTGMITFP-K--YDALRAIARGIPMDRVLVETDS-PYIVPVSCQGKRNEPAYVV 225 (262)
Q Consensus 150 ~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~-~--~~~~~e~v~~iPldriLlETDs-P~l~p~~~r~~~n~P~~i~ 225 (262)
..++.|+---+-+.++-+-++|+-+|.=|.-.+. + -..+|++++. -=.+=+-||. |+-.|..+| .-.
T Consensus 273 ktvlaH~~hl~d~ei~~l~k~g~svshCP~Sn~~L~sG~~~vr~lL~~--~v~VgLGtDv~~~s~l~a~r-------~A~ 343 (439)
T KOG3968 273 KTVLAHLEHLSDEEIELLAKRGCSVSHCPTSNSILGSGIPRVRELLDI--GVIVGLGTDVSGCSILNALR-------QAM 343 (439)
T ss_pred HHHHHHHEECCCHHHHHHHHCCCCEEECCCCHHHHCCCCCCHHHHHHC--CCEEEECCCCCCCCCHHHHH-------HHH
T ss_conf 767664110471167899862874477776403430688458999751--81673168766641089999-------998
Q ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999987---289989999999999999842568
Q gi|254780215|r 226 NTAKALAKE---KDVSYEDLMEETTKNALKLFSKIS 258 (262)
Q Consensus 226 ~~~~~iA~i---~~~~~eei~~~~~~N~~~~f~~~~ 258 (262)
.+.+.++.. .++|++|+....+-|.-+..|+-+
T Consensus 344 ~~s~hL~~~~~~~~Ls~~e~L~lATi~GA~aLg~d~ 379 (439)
T KOG3968 344 PMSMHLACVLDVMKLSMEEALYLATIGGAKALGRDD 379 (439)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHCCCCC
T ss_conf 999888742673248999999998505165406777
No 120
>TIGR03473 HpnK hopanoid biosynthesis associated protein HpnK. The sequences represented by this model are members of the pfam04794 "YdjC-like" family of uncharacterized proteins. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0976) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnK) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopanoid biosynthesis locus was described consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a ph
Probab=90.81 E-value=0.51 Score=27.51 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=41.9
Q ss_pred CCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 875652268999999998699899991679877899999998557233211244544334
Q gi|254780215|r 10 LLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAH 69 (262)
Q Consensus 10 ~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~ 69 (262)
|+--+......-+.++.+.|+..-..+-++-..|..+.++++.+|+ ..+|+|=....
T Consensus 9 DDfGl~~~vn~gI~~~~~~GivtstS~Mvn~p~~~~A~~l~k~~p~---l~vGlHltLt~ 65 (283)
T TIGR03473 9 DDFGLSLEVNEAVEKAHRDGILTAASLMVGAPAAEDAVERARRLPG---LGVGLHLVLVD 65 (283)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCC---CCEEEEEEECC
T ss_conf 5678887789999999987984676653689149999999974899---98798787058
No 121
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=90.36 E-value=1.7 Score=24.09 Aligned_cols=141 Identities=18% Similarity=0.103 Sum_probs=87.2
Q ss_pred HHHHHH-HHHHHHCCCCCEE-EC-HHHHHHHHHHHHH--HHHCCCCCC-CCEECCCCHHHHHHHHCCCCEEECCCCCCHH
Q ss_conf 789999-8766420442033-00-0233357999853--100036753-3112146402344321035202023322113
Q gi|254780215|r 110 VVFLRH-IEASRITGIPLVI-HS-RSADDDMAAILQE--EMKKGPFPF-VIHCFSSSQKLADICLELGGYISFTGMITFP 183 (262)
Q Consensus 110 ~vF~~q-l~lA~e~~~pv~i-H~-r~a~~~~l~iL~~--~~~~~~~~~-i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~ 183 (262)
.-|-++ ++-..+++..|=+ |+ .++..+++++-+. ...+...+. .=|.=+=+-++++.+.+.|--++++..-.|-
T Consensus 153 t~~G~~~v~~mn~lgm~iDvSH~s~~~~~d~~~~s~~PviaSHSn~ral~~h~RNl~D~~i~aia~~gGviGi~~~~~fl 232 (309)
T cd01301 153 TPFGKELVREMNRLGIIIDLSHLSERTFWDVLDISNAPVIASHSNARALCDHPRNLTDAQLKAIAETGGVIGVNFYPAFL 232 (309)
T ss_pred CHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 98999999999860967754879889999999845899898578833214887889999999999849889995146441
Q ss_pred H----------HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 3----------322333321056671798307866787776887588244999999999872899899999999999998
Q gi|254780215|r 184 K----------YDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKL 253 (262)
Q Consensus 184 ~----------~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~ 253 (262)
+ .+.+.-+++.+..|.+-+=||-.... .+. .....++.++.+++.+-+ +|.+.+++.++...|++|+
T Consensus 233 ~~~~~~~~~~~~~Hi~~i~~l~G~dhVgiGsDfdg~~-~~~-~~l~d~~~~p~l~~~L~~-rG~s~~~i~ki~g~N~lRV 309 (309)
T cd01301 233 SPGADATLDDVVRHIDYIVDLIGIDHVGLGSDFDGIG-GTP-GGLEDVSDLPNLTAELLE-RGYSEEEIEKIAGGNFLRV 309 (309)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCC-CCC-CCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHCCCCC
T ss_conf 7999999999999999999971988289897889999-997-887798789999999998-6989999999953270119
No 122
>pfam02679 ComA (2R)-phospho-3-sulfolactate synthase (ComA). In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyses the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyses the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalysed reaction is analogous to those reactions catalysed by beta-elimination enzymes that proceed through an enolate intermediate.
Probab=90.34 E-value=0.85 Score=26.01 Aligned_cols=169 Identities=14% Similarity=0.169 Sum_probs=93.1
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 99869989999167987789999999855723321124454433446788998853100133321004467755332211
Q gi|254780215|r 25 AHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHT 104 (262)
Q Consensus 25 a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~ 104 (262)
=+..|++.++..|..+...+..++.+..|=+.+..+.|-+- =..++++.+..++..+..+ +-|-..+-
T Consensus 10 PR~~GlT~v~D~gl~~~~~eD~Le~~g~yID~~K~g~gt~~----l~p~~~l~eKI~l~~~~~V--------~v~~GGtl 77 (245)
T pfam02679 10 PRRTGLTMVLDKGLGPRFLEDLLESAGDYIDFLKFGWGTSA----LMPEDILKEKIDLAHEHGV--------YVYTGGTL 77 (245)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHEEEEEECCCEEE----ECCHHHHHHHHHHHHHCCC--------EEECCCHH
T ss_conf 85568269944999989999999861333358997687650----1788999999999998599--------48479699
Q ss_pred C--HHHHHHHHHHHHHHHHCCCCCEEECHHH----HHHHHHHHHHHHHCCCCCCCC--EE----------CCCCHHHHHH
Q ss_conf 1--0246789999876642044203300023----335799985310003675331--12----------1464023443
Q gi|254780215|r 105 I--EEQKVVFLRHIEASRITGIPLVIHSRSA----DDDMAAILQEEMKKGPFPFVI--HC----------FSSSQKLADI 166 (262)
Q Consensus 105 ~--e~Q~~vF~~ql~lA~e~~~pv~iH~r~a----~~~~l~iL~~~~~~~~~~~i~--H~----------FsG~~~~~~~ 166 (262)
. ..++..|+..++.+++++...+==+.+. +++-.++++.....+ .+++- .+ -.-=.+++++
T Consensus 78 fE~a~~~~~~d~y~~~~~~lGf~~iEiSdg~i~i~~~~~~~~I~~~~~~G-~~v~~EvG~K~~~~~~~~~~~~~I~~~~~ 156 (245)
T pfam02679 78 FEIAILQGKFDEYLRECKELGFDAIEISDGSIELPEEERLRLIRKAKKAG-FKVLSEVGKKDPEADSELTPDELIEQIER 156 (245)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999738399999999986998899568844689899999999999789-97966415467543456799999999999
Q ss_pred HHCCCCEEEC-----CC--CCCHH----HHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 2103520202-----33--22113----33223333210566717983078
Q gi|254780215|r 167 CLELGGYISF-----TG--MITFP----KYDALRAIARGIPMDRVLVETDS 206 (262)
Q Consensus 167 ~l~~g~y~S~-----~g--~i~~~----~~~~~~e~v~~iPldriLlETDs 206 (262)
.++.|.+.=+ || -++.. +.+-+.+++..+|+++++.|-..
T Consensus 157 ~LeaGA~~ViiEarEsg~~Gi~~~~g~~r~~~i~~I~~~~~~~~iifEAp~ 207 (245)
T pfam02679 157 DLEAGADKVIIEARESGGVGLYDSDGEVRTDLVEEILERLGLEKLIFEAPQ 207 (245)
T ss_pred HHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHCEEEECCC
T ss_conf 997698289985101487565088988718899999973883008997898
No 123
>pfam04794 YdjC YdjC-like protein. Family of YdjC-like proteins. This region is possibly involved in the the cleavage of cellobiose-phosphate.
Probab=90.23 E-value=1.4 Score=24.63 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=44.4
Q ss_pred CCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 888756522689999999986998999916798778999999985572332112445443344
Q gi|254780215|r 8 HLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHE 70 (262)
Q Consensus 8 HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~ 70 (262)
|-|+.-+......-|.++.+.|+..-..+-++-..|..+.++++.+|+ + .+|+|=.....
T Consensus 6 ~ADD~G~s~~vn~gI~~~~~~G~ltstS~M~n~p~~~~a~~~~k~~p~-l--~vGlHlnLt~g 65 (261)
T pfam04794 6 NADDFGLSPGVNRGIIEAHRAGIVTSTSLMVNMPAFEHAAALAKRNPD-L--GVGLHLTLTAG 65 (261)
T ss_pred ECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCC-C--CEEEEEEECCC
T ss_conf 677688987788999999987981678871078159999999972899-9--87888773689
No 124
>PRK08609 hypothetical protein; Provisional
Probab=90.06 E-value=1.6 Score=24.10 Aligned_cols=15 Identities=0% Similarity=-0.121 Sum_probs=5.1
Q ss_pred HHHHHHHHHHCCCCE
Q ss_conf 899999999869989
Q gi|254780215|r 18 RHDVIMRAHQANVLK 32 (262)
Q Consensus 18 ~~~~i~~a~~~gv~~ 32 (262)
+++++..|.+.|..+
T Consensus 351 ~~ema~aa~~~G~~y 365 (570)
T PRK08609 351 IEEMVEACIAKGYKF 365 (570)
T ss_pred HHHHHHHHHHCCCEE
T ss_conf 999999999859808
No 125
>PRK12310 hydroxylamine reductase; Provisional
Probab=89.73 E-value=1.9 Score=23.76 Aligned_cols=187 Identities=18% Similarity=0.189 Sum_probs=109.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-----------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--------------
Q ss_conf 89999167987789999999855-----------72332112445443344678899885310013--------------
Q gi|254780215|r 31 LKMIAIAIKVKDFVPLIKLCQDY-----------PSSIFCSVGTHPCHAHEENEVLVDELVCLASH-------------- 85 (262)
Q Consensus 31 ~~~i~~~~~~~~~~~~~~l~~~~-----------p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~-------------- 85 (262)
..|++.|.|+.+.+..++-.+.- |-+-||.+-=+||.+-.+...|+++-+++..=
T Consensus 123 ~~ILVSGHDL~dL~~LL~QTeg~GInVYTHgEMLPAH~YP~Lkky~hL~GnyG~AW~~Q~~eF~~fpGpIl~TTNCi~pP 202 (429)
T PRK12310 123 KAILVTGHNLKALEELLKQTEGKGINVYTHSEMLPAHGYPELRKYKHLKGNLGKAWYDQRKLFEKFPGAILGTTNCVMPP 202 (429)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 88999798999999999863799930771765441356800057875566784377758899730998889844777778
Q ss_pred -----CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECC--
Q ss_conf -----3321004467755332211102467899998766420442033000233357999853100036753311214--
Q gi|254780215|r 86 -----PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFS-- 158 (262)
Q Consensus 86 -----~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~Fs-- 158 (262)
+|+.--|.+|.+-.+--. -.=|..-|+.|.+..-+-..-. +-+.-.|.
T Consensus 203 ~~sY~dRifTt~~vg~pG~~hI~-----~~DFs~vI~~Al~~~~~~~~~~--------------------~~i~~GF~h~ 257 (429)
T PRK12310 203 KGSYADRMFTYGIAGLEGVQHIE-----NDDFTPLIEKALELPELEKESD--------------------ETLTTGFHHT 257 (429)
T ss_pred CHHHCCCCEECCCCCCCCCEECC-----CCCCHHHHHHHHHCCCCCCCCC--------------------CEEEECCCHH
T ss_conf 34551044044777689972478-----8898899999985879977889--------------------7487263388
Q ss_pred CCHHHHHHHH---CCC---CEEECCCCCCHH-HHHHHHHHHHCCCCCCEEEEECC-CCCC-----------CCCC-CCCC
Q ss_conf 6402344321---035---202023322113-33223333210566717983078-6678-----------7776-8875
Q gi|254780215|r 159 SSQKLADICL---ELG---GYISFTGMITFP-KYDALRAIARGIPMDRVLVETDS-PYIV-----------PVSC-QGKR 218 (262)
Q Consensus 159 G~~~~~~~~l---~~g---~y~S~~g~i~~~-~~~~~~e~v~~iPldriLlETDs-P~l~-----------p~~~-r~~~ 218 (262)
-=...+.+.+ +.| -+|-++|.=.-+ ...=.+|+++++|.|.+.|-.-. -|-+ |.-. -|+=
T Consensus 258 ~vl~~A~~vveaVK~G~Ir~FflvgGCDG~~~~R~YYtefa~~~P~DtvILTl~CgKyRfN~ldlG~I~GIPRlLD~GQC 337 (429)
T PRK12310 258 TVLSLADKIIEAVKAGKIRRFFVIGGCDAPGKGREYYRELATSLPKDTVILTLSCGKFRFNDLDFGTIEGIPRYIDLGQC 337 (429)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89877789999996499627999812689998862599999878997299864312332357776675883443236665
Q ss_pred CCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 882449999999998728998999
Q gi|254780215|r 219 NEPAYVVNTAKALAKEKDVSYEDL 242 (262)
Q Consensus 219 n~P~~i~~~~~~iA~i~~~~~eei 242 (262)
|.......++.++|+..++++.++
T Consensus 338 NDsYsai~IA~aLaeaf~~~VNdL 361 (429)
T PRK12310 338 NDSISAVKIALALAEAFGCEVNDL 361 (429)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 448999999999999868996567
No 126
>PRK07945 hypothetical protein; Provisional
Probab=88.91 E-value=1.9 Score=23.63 Aligned_cols=33 Identities=15% Similarity=0.010 Sum_probs=25.4
Q ss_pred EEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 861388875652268999999998699899991
Q gi|254780215|r 4 DTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAI 36 (262)
Q Consensus 4 D~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~ 36 (262)
|-|+|-+..+-...++++.+.|...|.+++.++
T Consensus 99 DLH~HT~wSDG~~sieeMa~aA~~lGyeYlaIT 131 (335)
T PRK07945 99 DLHLHSDWSDGGSPIEEMMATAAALGHEYCALT 131 (335)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 653378845797869999999998398279980
No 127
>PRK05290 hydroxylamine reductase; Provisional
Probab=88.80 E-value=2.2 Score=23.33 Aligned_cols=189 Identities=17% Similarity=0.149 Sum_probs=108.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-----------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--------------
Q ss_conf 89999167987789999999855-----------72332112445443344678899885310013--------------
Q gi|254780215|r 31 LKMIAIAIKVKDFVPLIKLCQDY-----------PSSIFCSVGTHPCHAHEENEVLVDELVCLASH-------------- 85 (262)
Q Consensus 31 ~~~i~~~~~~~~~~~~~~l~~~~-----------p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~-------------- 85 (262)
..|++.|.|+.+.+..++-.+.- |-+-||.+-=+||.+-.+...|+++-+++..=
T Consensus 233 ~~ILVSGHDL~DLe~LL~QTeg~GInVYTHgEMLPAH~YP~lkKy~HL~GNyG~AW~~Q~~EF~~FpGpIl~TTNCi~pP 312 (540)
T PRK05290 233 KGILVSGHDLKDLEELLEQTEGTGINVYTHGEMLPAHGYPELKKYPHLVGNYGSAWQNQQKEFASFPGPILMTTNCIIPP 312 (540)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 87999698989999999974078857986665442456801144751024664187878899860887889854667768
Q ss_pred -----CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCC-
Q ss_conf -----33210044677553322111024678999987664204420330002333579998531000367533112146-
Q gi|254780215|r 86 -----PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSS- 159 (262)
Q Consensus 86 -----~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG- 159 (262)
+|+.-.|.+|.+-..-- + -+=|..-|+.|.+..-|.-...- +-|.-.|.-
T Consensus 313 ~~sY~dRifTtg~vg~pG~~HI---~--~kDFs~vIe~Al~~~g~~e~e~~-------------------~~i~~GF~h~ 368 (540)
T PRK05290 313 KGSYKDRIFTTGIVGWPGVKHI---D--GKDFSPVIEKALECPGFPEDEIG-------------------HEITVGFGHN 368 (540)
T ss_pred CHHHHCCCEECCCCCCCCCCCC---C--CCCCHHHHHHHHHCCCCCCCCCC-------------------CEEEECCCHH
T ss_conf 1565012033266668997017---8--88878999999848998677899-------------------7687264488
Q ss_pred -CHHHHHHHH---CCC---CEEECCCCCCHHH-HHHHHHHHHCCCCCCEEEEECC-CCCC-----------CCCC-CCCC
Q ss_conf -402344321---035---2020233221133-3223333210566717983078-6678-----------7776-8875
Q gi|254780215|r 160 -SQKLADICL---ELG---GYISFTGMITFPK-YDALRAIARGIPMDRVLVETDS-PYIV-----------PVSC-QGKR 218 (262)
Q Consensus 160 -~~~~~~~~l---~~g---~y~S~~g~i~~~~-~~~~~e~v~~iPldriLlETDs-P~l~-----------p~~~-r~~~ 218 (262)
=...+.+.+ +.| -+|-++|.=--++ ..=..|+++++|.|.++|-.-. -|-+ |.-. -|+=
T Consensus 369 ~Vl~~AdkVieaVK~G~Ir~FflvgGCDG~~~~R~YYtefa~~lP~DtVILTlgCgKyRfn~ldlGdI~GIPRlLD~GQC 448 (540)
T PRK05290 369 AVLAVADKVIDAVKSGAIRHFFLMGGCDGAKPGRNYYTEFAEKLPKDTVILTLGCGKYRFNKLDLGDIGGIPRLLDAGQC 448 (540)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99976799999997498407999832689987750799999968986089950322223354556665787560206566
Q ss_pred CCHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 8824499999999987289989999
Q gi|254780215|r 219 NEPAYVVNTAKALAKEKDVSYEDLM 243 (262)
Q Consensus 219 n~P~~i~~~~~~iA~i~~~~~eei~ 243 (262)
|.......++.++|+..++++.++-
T Consensus 449 NDsYSai~IA~aLaeaf~~~VNdLP 473 (540)
T PRK05290 449 NDAYSAIVIALALAEAFGCGVNDLP 473 (540)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 3489999999999998589922040
No 128
>PRK09358 adenosine deaminase; Provisional
Probab=88.38 E-value=2.3 Score=23.14 Aligned_cols=143 Identities=20% Similarity=0.214 Sum_probs=82.3
Q ss_pred CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEEC--CCCH
Q ss_conf 33210044677553322111024678999987664204420330002--3335799985310003675331121--4640
Q gi|254780215|r 86 PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHCF--SSSQ 161 (262)
Q Consensus 86 ~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~F--sG~~ 161 (262)
+.++|||=.|= ....+. .-|....+.|++.++++.+|+=. ....+.+.+... ++ .-|=|++ ..+.
T Consensus 160 ~~vvGidl~G~---E~~~~~----~~f~~~f~~ar~~gl~~t~HaGE~~~~~~i~~ai~~l---~a-~RIGHGv~~~~d~ 228 (333)
T PRK09358 160 RGVVGFDLAGD---ELGFPP----SKFARAFDIARDAGLRLTAHAGEAGGPESIWEALDEL---GA-DRIGHGVRAIEDP 228 (333)
T ss_pred CCEEEEECCCC---CCCCCH----HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC---CC-CEECCCEECCCCH
T ss_conf 87798435687---678986----8799999999985992333068889849999999842---87-6423503116799
Q ss_pred HHHHHHHCCCCEEECCCCCCHH-----H--HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 2344321035202023322113-----3--32233332105667179830786678777688758824499999999987
Q gi|254780215|r 162 KLADICLELGGYISFTGMITFP-----K--YDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKE 234 (262)
Q Consensus 162 ~~~~~~l~~g~y~S~~g~i~~~-----~--~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i 234 (262)
+.++.+.+.+.-+-+.+..... . .--++...+. -=.+.+-||-|-++- .++..-+..+++.
T Consensus 229 ~l~~~l~~~~I~lEiCptSN~~~~~v~~~~~HPi~~~~~~--gv~v~inTDD~~vf~----------t~ls~Ey~~~~~~ 296 (333)
T PRK09358 229 ALMDRLADRRIPLEVCPTSNVQLGVVPSLAEHPLKKLLDA--GVRVTINTDDPLVFG----------TTLSEEYELLAEA 296 (333)
T ss_pred HHHHHHHHCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHC--CCEEEECCCCCCCCC----------CCHHHHHHHHHHH
T ss_conf 9999998669669976643032015787555769999988--994998089952028----------9789999999998
Q ss_pred HCCCHHHHHHHHHHHHHH
Q ss_conf 289989999999999999
Q gi|254780215|r 235 KDVSYEDLMEETTKNALK 252 (262)
Q Consensus 235 ~~~~~eei~~~~~~N~~~ 252 (262)
.+++.+++.+. ..|+.+
T Consensus 297 ~~ls~~el~~l-~~nai~ 313 (333)
T PRK09358 297 FGLTDEELAQL-ARNALE 313 (333)
T ss_pred HCCCHHHHHHH-HHHHHH
T ss_conf 59299999999-999999
No 129
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=88.07 E-value=2.4 Score=23.02 Aligned_cols=143 Identities=18% Similarity=0.226 Sum_probs=84.3
Q ss_pred CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH--HHHHHHHHHHHHHHHCCCCCCCCEECC--CCH
Q ss_conf 3321004467755332211102467899998766420442033000--233357999853100036753311214--640
Q gi|254780215|r 86 PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR--SADDDMAAILQEEMKKGPFPFVIHCFS--SSQ 161 (262)
Q Consensus 86 ~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r--~a~~~~l~iL~~~~~~~~~~~i~H~Fs--G~~ 161 (262)
+.++|||=.|-. ...+. .-|....+.|++.++++.+|+= +....+.+.+... . + .=|=|++. .+.
T Consensus 156 ~~vvGidl~G~E---~~~~~----~~f~~~f~~a~~~gl~~t~HaGE~~~~~~v~~ai~~l--~-~-~RIGHG~~~~~d~ 224 (325)
T cd01320 156 KGVVGFDLAGDE---VGFPP----EKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLL--G-A-ERIGHGIRAIEDP 224 (325)
T ss_pred CCEEEEECCCCC---CCCCH----HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCC--C-C-CEECCCCCCCCCH
T ss_conf 877884257866---78986----8999999999985984566458889828899998604--9-8-6432641134699
Q ss_pred HHHHHHHCCCCEEECCCCCCHH-------HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 2344321035202023322113-------332233332105667179830786678777688758824499999999987
Q gi|254780215|r 162 KLADICLELGGYISFTGMITFP-------KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKE 234 (262)
Q Consensus 162 ~~~~~~l~~g~y~S~~g~i~~~-------~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i 234 (262)
+.++.+.+.+.-+-+.+..... +.--++..++. -=.+-+-||-|-++- .++..-++.+++-
T Consensus 225 ~l~~~l~~~~I~lEiCptSN~~~~~v~~~~~HPi~~~~~~--gv~v~i~TDDp~~f~----------t~l~~Ey~~~~~~ 292 (325)
T cd01320 225 ELVKRLAERNIPLEVCPTSNVQTGAVKSLAEHPLRELLDA--GVKVTINTDDPTVFG----------TYLTDEYELLAEA 292 (325)
T ss_pred HHHHHHHHCCCEEEECCCCCHHCCCCCCCCCCHHHHHHHC--CCEEEEECCCCCCCC----------CCHHHHHHHHHHH
T ss_conf 9999998609727876653211057888778729999987--992999589940028----------9889999999998
Q ss_pred HCCCHHHHHHHHHHHHHH
Q ss_conf 289989999999999999
Q gi|254780215|r 235 KDVSYEDLMEETTKNALK 252 (262)
Q Consensus 235 ~~~~~eei~~~~~~N~~~ 252 (262)
.|++.+++. ++.+|+.+
T Consensus 293 ~gls~~~l~-~l~~nai~ 309 (325)
T cd01320 293 FGLTEEELK-KLARNAVE 309 (325)
T ss_pred HCCCHHHHH-HHHHHHHH
T ss_conf 592999999-99999999
No 130
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family; InterPro: IPR011288 This entry describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4 , .; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=87.23 E-value=0.89 Score=25.89 Aligned_cols=107 Identities=27% Similarity=0.353 Sum_probs=57.9
Q ss_pred CCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCC----
Q ss_conf 388875652268999999998699899991679877899999998557233211244544334----------467----
Q gi|254780215|r 7 CHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAH----------EEN---- 72 (262)
Q Consensus 7 ~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~----------~~~---- 72 (262)
.|||+ .++.+++ .+--.+||+-+++=|..+ .|++..++.|+ .|-.| |=|.+. .++
T Consensus 77 lHLDH---he~~ddI-~~kv~aGvkS~MIDaSHl-~F~~Nv~lvk~---VVdFc---Hr~D~sVEAELG~LgG~EDDl~V 145 (282)
T TIGR01858 77 LHLDH---HESFDDI-KQKVAAGVKSVMIDASHL-PFEQNVKLVKE---VVDFC---HRYDASVEAELGRLGGVEDDLSV 145 (282)
T ss_pred ECCCC---CCCHHHH-HHHHHCCCCEEEECCCCC-CHHHHHHHHHH---HHHHH---CCCCCEEEEEECCCCCCCCCCEE
T ss_conf 10334---6887688-999753772355657778-88887788666---66442---16786576660846553266425
Q ss_pred ---------HHHHHHHHHHCC-CCCCCEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
Q ss_conf ---------889988531001-3332100446-7755332211102467899998766420442033000
Q gi|254780215|r 73 ---------EVLVDELVCLAS-HPRVVAIGET-GLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR 131 (262)
Q Consensus 73 ---------~~~~~~l~~l~~-~~~~~aIGEi-GLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r 131 (262)
+....++.+.-. +.=.+|||=- || |.....++ |.|-.++=+.-+.|++||--
T Consensus 146 de~~AlyTdP~~A~~Fve~TGvDSLAvAIGTAHGl--Y~~aP~LD-----F~RL~~IR~~v~vPLVLHGA 208 (282)
T TIGR01858 146 DEEDALYTDPDEAKEFVEATGVDSLAVAIGTAHGL--YKEAPKLD-----FDRLAKIREKVDVPLVLHGA 208 (282)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH--HHCCCCCC-----HHHHHHHHHCCCCCEEECCC
T ss_conf 40102358968999998742754788988665323--21267533-----78998752203777242177
No 131
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=87.17 E-value=2.7 Score=22.68 Aligned_cols=38 Identities=8% Similarity=0.170 Sum_probs=20.0
Q ss_pred HCCHHHHHHHHHHCCCCEEEEECCCH------HHHHHHHHHHHH
Q ss_conf 22689999999986998999916798------778999999985
Q gi|254780215|r 15 DEDRHDVIMRAHQANVLKMIAIAIKV------KDFVPLIKLCQD 52 (262)
Q Consensus 15 ~~d~~~~i~~a~~~gv~~~i~~~~~~------~~~~~~~~l~~~ 52 (262)
..|..+++......|++.+..+..+. ..+.-..++++.
T Consensus 26 ~gdP~~~a~~~~~~gadelhivDld~a~~g~~~n~~~i~~i~~~ 69 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEE 69 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 88999999999986999999970673203770079999999986
No 132
>KOG4342 consensus
Probab=87.04 E-value=0.59 Score=27.07 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCC
Q ss_conf 778999999985572332112-445443344678899885310013332100446
Q gi|254780215|r 41 KDFVPLIKLCQDYPSSIFCSV-GTHPCHAHEENEVLVDELVCLASHPRVVAIGET 94 (262)
Q Consensus 41 ~~~~~~~~l~~~~p~~i~~a~-GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEi 94 (262)
.+|....++..++|+.++.|- ..-=.+..+..+.....|.++++..++++||-.
T Consensus 308 RSW~tq~~lMdR~PEy~FvcSQAqQ~~WlkedhP~~f~kl~e~~~q~qF~pvGGt 362 (1078)
T KOG4342 308 RSWVTQLQLMDRNPEYIFVCSQAQQLEWLKEDHPGLFSKLQEFACQGQFVPVGGT 362 (1078)
T ss_pred HHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEECCCE
T ss_conf 9999887587639652673516888887763285589999998752756611655
No 133
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=86.84 E-value=2.8 Score=22.56 Aligned_cols=135 Identities=10% Similarity=0.024 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHCCCCCEEECHHHHHHHH-----------HHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCC
Q ss_conf 78999987664204420330002333579-----------9985310003675331121464023443210352020233
Q gi|254780215|r 110 VVFLRHIEASRITGIPLVIHSRSADDDMA-----------AILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTG 178 (262)
Q Consensus 110 ~vF~~ql~lA~e~~~pv~iH~r~a~~~~l-----------~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g 178 (262)
+.++...++|++ +.|+.+|+-....|+- +.|.+..--++.-+..||--=+.+.++.+.+.|..++.+|
T Consensus 207 e~l~~~~~~a~~-~~~i~~Hl~E~~~e~~~~~~~~g~~pv~~l~~~GlL~~~~~~aH~v~ls~~ei~~la~~g~~VahcP 285 (418)
T cd01313 207 EQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRPVELLLDHGHLDARWCLVHATHLTDNETLLLGRSGAVVGLCP 285 (418)
T ss_pred HHHHHHHHHHHH-CCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCCEEECC
T ss_conf 999999998764-5871563167657899999972898066698658876775564206589999999997489558771
Q ss_pred CCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------HCCCHHHHHH
Q ss_conf 22113332---233332105667179830786678777688758824499999999987-----------2899899999
Q gi|254780215|r 179 MITFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKE-----------KDVSYEDLME 244 (262)
Q Consensus 179 ~i~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i-----------~~~~~eei~~ 244 (262)
.....-+. .++++.+. -=++=|=||+... .+ ...-.+.+....++ ..++.+++.+
T Consensus 286 ~Sn~~lg~G~~p~~~~~~~--Gi~vgLGTD~~~~--------~d-~~~~~r~~~~~~rl~~~~~~~~~~~~~~~~~~vl~ 354 (418)
T cd01313 286 TTEANLGDGIFPAAALLAA--GGRIGIGSDSNAR--------ID-LLEELRQLEYSQRLRDRARNVLATAGGSSARALLD 354 (418)
T ss_pred HHHHHHCCCCCCHHHHHHC--CCCEEEECCCCCC--------CC-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 6689728999984999977--9918997478988--------58-99999999999999864325678877888999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999998425
Q gi|254780215|r 245 ETTKNALKLFSK 256 (262)
Q Consensus 245 ~~~~N~~~~f~~ 256 (262)
-.+.|.-+.+|.
T Consensus 355 mAT~~GA~aLgl 366 (418)
T cd01313 355 AALAGGAQALGL 366 (418)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999689
No 134
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=86.19 E-value=2.1 Score=23.37 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=12.2
Q ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf 9998699899991679877899999998557
Q gi|254780215|r 24 RAHQANVLKMIAIAIKVKDFVPLIKLCQDYP 54 (262)
Q Consensus 24 ~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p 54 (262)
+..+.|+++++..+.-..+-....++++.|+
T Consensus 91 ~ll~~GadkViigs~a~~~p~~i~~~~~~fG 121 (253)
T PRK01033 91 RIFSLGVEKVSISTAALEDPKLITEAAEIYG 121 (253)
T ss_pred HHHHCCCCEEEECCHHHHCCHHHHHHHHHCC
T ss_conf 9986798669999878637416578998779
No 135
>PRK07329 hypothetical protein; Provisional
Probab=85.37 E-value=3.3 Score=22.08 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=55.4
Q ss_pred EEEEECCCCCH-HHHCCHHHHHHHHHHCCCCEEEEEC-C--------------CHHH-HHHHHHHHHHCCCCCCCC--CC
Q ss_conf 16861388875-6522689999999986998999916-7--------------9877-899999998557233211--24
Q gi|254780215|r 2 LIDTHCHLLLP-DFDEDRHDVIMRAHQANVLKMIAIA-I--------------KVKD-FVPLIKLCQDYPSSIFCS--VG 62 (262)
Q Consensus 2 ~iD~H~HL~~~-~~~~d~~~~i~~a~~~gv~~~i~~~-~--------------~~~~-~~~~~~l~~~~p~~i~~a--~G 62 (262)
|.|.|+|-... .-....++.++++.+ .++.+- . +... +....++.++|++.|... +|
T Consensus 1 ~~D~H~HT~fS~ds~~~~e~~i~~a~~----~i~~TdH~d~~~~~~~~~~~~~d~~~Y~~~i~~l~~~y~~~I~~GiE~g 76 (246)
T PRK07329 1 IRDQHLHTHFSFDSDAKFEDYLTHFKG----EIVTTEHLDLSNPYDTGQDDVPDYAKYSAEIAELNEKYGNRIKKGIEIG 76 (246)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHC----CEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 951357899989877589999998514----8799755889987656313577899999999999997235106889947
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEECCC----CCCCC----CCCCCCHHHHHHHHHHHHHHHHCC-CCCEEE
Q ss_conf 45443344678899885310013332100446----77553----322111024678999987664204-420330
Q gi|254780215|r 63 THPCHAHEENEVLVDELVCLASHPRVVAIGET----GLDRY----HNAHTIEEQKVVFLRHIEASRITG-IPLVIH 129 (262)
Q Consensus 63 iHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEi----GLD~~----~~~~~~e~Q~~vF~~ql~lA~e~~-~pv~iH 129 (262)
..|.. .+....+..--+=+-+ ||=+ |.|++ ...+..+.-.+.|+..++.++... --|+=|
T Consensus 77 ~~~~~-----~~~~~~~l~~~~fD~V--IGSvH~~~~~d~~~~~~~~~~~~e~~~~Yfe~~~~~v~~~~~fdvlgH 145 (246)
T PRK07329 77 YFAPR-----EDDILDFLANKDFDLK--LLSVHHNGVYDYLDEEVLDMDKKELLQEYFEKMEEAIGRFVDADVLAH 145 (246)
T ss_pred CCCCC-----HHHHHHHHCCCCCCEE--EEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 78875-----9999998556999989--997505699888767763799999999999999999980899118317
No 136
>PRK04326 methionine synthase; Provisional
Probab=85.08 E-value=3.4 Score=21.99 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=53.6
Q ss_pred HHHHHHHHHH-HCCCCCEEE-CHHHHHHHHHHHHHHHHCCCCCCCCEECC-CCHHHHHHHHCCCC--EEECCCCCCHH--
Q ss_conf 8999987664-204420330-00233357999853100036753311214-64023443210352--02023322113--
Q gi|254780215|r 111 VFLRHIEASR-ITGIPLVIH-SRSADDDMAAILQEEMKKGPFPFVIHCFS-SSQKLADICLELGG--YISFTGMITFP-- 183 (262)
Q Consensus 111 vF~~ql~lA~-e~~~pv~iH-~r~a~~~~l~iL~~~~~~~~~~~i~H~Fs-G~~~~~~~~l~~g~--y~S~~g~i~~~-- 183 (262)
...+-+..|. ..+..+.+| ||+..+.+++.|.+. +..++..=|. ++.+.++.+-+.++ .+.+ |.|+-+
T Consensus 194 ~~~ea~n~~~~~~~~~i~~HiC~Gny~~i~~~l~~~----~vd~~~lE~~~~~~~~l~~l~~~~~~k~v~~-Gvvd~k~~ 268 (330)
T PRK04326 194 IAKEALNIIVKGIDVKLGLHVCYGDYSRLAPYILEF----PVDQFDLEFKNYNFKLLDLLKEYGFEKELGV-GVIDVHSP 268 (330)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHC----CCCEEEHHHHCCCCHHHHHHHHCCCCCEEEE-EEEECCCC
T ss_conf 999999997278997799995477668899999709----9888867540798366688884699984887-36726899
Q ss_pred -------HHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf -------3322333321056671798307866
Q gi|254780215|r 184 -------KYDALRAIARGIPMDRVLVETDSPY 208 (262)
Q Consensus 184 -------~~~~~~e~v~~iPldriLlETDsP~ 208 (262)
=.++++++++.+|+|||.+-||+=+
T Consensus 269 ~lE~~e~i~~ri~~a~~~v~~erl~lspdCGf 300 (330)
T PRK04326 269 RVESVEEIKEAIKKLLEYFPPEKVYINPDCGL 300 (330)
T ss_pred CCCCHHHHHHHHHHHHHHCCHHHEEECCCCCC
T ss_conf 98999999999999997389777998589999
No 137
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=84.70 E-value=3.6 Score=21.88 Aligned_cols=51 Identities=25% Similarity=0.439 Sum_probs=33.4
Q ss_pred HHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCCCC---------CC---CCCCCCCCCCC
Q ss_conf 999999998699899991679--87789999999855723---------32---11244544334
Q gi|254780215|r 19 HDVIMRAHQANVLKMIAIAIK--VKDFVPLIKLCQDYPSS---------IF---CSVGTHPCHAH 69 (262)
Q Consensus 19 ~~~i~~a~~~gv~~~i~~~~~--~~~~~~~~~l~~~~p~~---------i~---~a~GiHP~~~~ 69 (262)
.+.+.+|.++|+..+++++.. ..|-.+..+.++++.-. +- +-+|+.|.+..
T Consensus 79 ~dAi~EAi~agI~~iV~ITEgiP~~D~~~i~~~a~~~g~riIGPNc~GiI~Pg~~kiGi~p~~~~ 143 (289)
T PRK05678 79 ADAILEAIDAGIDLIVCITEGIPVLDMLEVKRYLKGKKTRLIGPNCPGIITPGECKIGIMPGHIH 143 (289)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCEEECCCCCCCCCCCCCCC
T ss_conf 99999998679988999438997888999999873079889889997016677240123562247
No 138
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=83.71 E-value=3 Score=22.33 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHCCCCEEEEE
Q ss_conf 68999999998699899991
Q gi|254780215|r 17 DRHDVIMRAHQANVLKMIAI 36 (262)
Q Consensus 17 d~~~~i~~a~~~gv~~~i~~ 36 (262)
|..++++...+.|++.++.+
T Consensus 31 dP~~~a~~~~~~gadel~iv 50 (253)
T PRK02083 31 DPVELAKRYDEEGADELVFL 50 (253)
T ss_pred CHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999998799989999
No 139
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=83.11 E-value=4.1 Score=21.45 Aligned_cols=135 Identities=16% Similarity=0.110 Sum_probs=62.5
Q ss_pred HHHHHHHHHCCCCCEEECHHHHHH----HHHHHHHHHHCCCCCC-CCEECCC----------CHHHHHHHHCCCCEEECC
Q ss_conf 999876642044203300023335----7999853100036753-3112146----------402344321035202023
Q gi|254780215|r 113 LRHIEASRITGIPLVIHSRSADDD----MAAILQEEMKKGPFPF-VIHCFSS----------SQKLADICLELGGYISFT 177 (262)
Q Consensus 113 ~~ql~lA~e~~~pv~iH~r~a~~~----~l~iL~~~~~~~~~~~-i~H~FsG----------~~~~~~~~l~~g~y~S~~ 177 (262)
....++|.+++.|+..|.+..... ..+++. .......+. +.|+-.. ....++.....|..+...
T Consensus 202 ~~~~~~a~~~~~~~~~h~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~ 280 (415)
T cd01297 202 VALARVAARYGGVYQTHVRYEGDSILEALDELLR-LGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTAD 280 (415)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9999999972985787306775206789999999-998629978999874367310234777999999999749846523
Q ss_pred CCC-CHHHHHHHHHHHHCCCCCCEEEEECC-CCCCCCCCCCCCCCHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 322-11333223333210566717983078-667877768875882449999-999998728998999999999999984
Q gi|254780215|r 178 GMI-TFPKYDALRAIARGIPMDRVLVETDS-PYIVPVSCQGKRNEPAYVVNT-AKALAKEKDVSYEDLMEETTKNALKLF 254 (262)
Q Consensus 178 g~i-~~~~~~~~~e~v~~iPldriLlETDs-P~l~p~~~r~~~n~P~~i~~~-~~~iA~i~~~~~eei~~~~~~N~~~~f 254 (262)
..- ........+..... +-...-||+ |...+.+ + .. ...... .+.+-+...++++++.+.++.|.-+.|
T Consensus 281 ~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~-~-~~---~~~~~~l~~~~~~~~~l~~~~ai~~~T~n~A~~l 352 (415)
T cd01297 281 VYPYGAGSEDDVRRIMAH---PVVMGGSDGGALGKPHP-R-SY---GDFTRVLGHYVRERKLLSLEEAVRKMTGLPARVF 352 (415)
T ss_pred CCCCCCCCHHHHHHHHHC---CCCEEEECCCCCCCCCC-C-HH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 147655652789999718---98258705676777552-0-13---4557888776533058899999999969999982
Q ss_pred HH
Q ss_conf 25
Q gi|254780215|r 255 SK 256 (262)
Q Consensus 255 ~~ 256 (262)
|.
T Consensus 353 gl 354 (415)
T cd01297 353 GL 354 (415)
T ss_pred CC
T ss_conf 99
No 140
>pfam00962 A_deaminase Adenosine/AMP deaminase.
Probab=83.09 E-value=4.1 Score=21.44 Aligned_cols=126 Identities=18% Similarity=0.153 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEECC--CCHHHHHHHHCCCCEEECCCCCCHH--
Q ss_conf 78999987664204420330002--33357999853100036753311214--6402344321035202023322113--
Q gi|254780215|r 110 VVFLRHIEASRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHCFS--SSQKLADICLELGGYISFTGMITFP-- 183 (262)
Q Consensus 110 ~vF~~ql~lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~Fs--G~~~~~~~~l~~g~y~S~~g~i~~~-- 183 (262)
.-|....+.|++.++++.+|+=. ..+.+.+.+... + + .-|=|++. .+.+.++.+.+.+.-+-+.+.....
T Consensus 178 ~~f~~~f~~a~~~gl~~T~HaGE~~~~~~v~~ai~~l--~-a-~RIGHG~~~~~d~~l~~~~~~~~I~lEvCptSNv~~~ 253 (329)
T pfam00962 178 PDFLYAFAEAGKYGLHLTPHAGEAGGPQSVVDALLDL--G-A-ERIGHGIRLAKDPVLLYLLAERQIPIEVCPLSNVALG 253 (329)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH--C-C-CCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHC
T ss_conf 9999999999980981267347889889999999851--7-4-4104640334699999998415953898866366525
Q ss_pred -----HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf -----332233332105667179830786678777688758824499999999987289989999999999999
Q gi|254780215|r 184 -----KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALK 252 (262)
Q Consensus 184 -----~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~ 252 (262)
..--++...+. -=.+-+-||-|-++- ..+..=+..+++..|++.+++. ++.+|+.+
T Consensus 254 ~v~~~~~HP~~~l~~~--gv~vtinTDDp~~f~----------ttL~~Ey~~~~~~~gls~~~l~-~l~~nai~ 314 (329)
T pfam00962 254 AVLSYAKHPLKEFLDA--GVPVSLSTDDPLQFG----------ATLSEEYTIAAQDFGLDTEDLC-ELARNSVK 314 (329)
T ss_pred CCCCCCHHHHHHHHHC--CCEEEEECCCCCCCC----------CCHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
T ss_conf 6676325799999987--982999789961018----------8889999999998592999999-99999999
No 141
>cd01914 HCP Hybrid cluster protein (HCP), formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. HCP has three structural domains, an N-terminal alpha-helical domain, and two similar domains comprising a central beta-sheet flanked by alpha-helices. HCP contains two iron-sulfur clusters, one of which is a [Fe4-S4] cubane cluster similar to that of carbon monoxide dehydrogenase (CODH). The second cluster, referred to as the hybrid cluster, is a hybrid [Fe4-S2-O2] center located at the interface of the three domains. Although the hybrid cluster is buried within the protein, it is accessible through a large hydrophobic cavity.
Probab=83.00 E-value=4.2 Score=21.42 Aligned_cols=187 Identities=18% Similarity=0.203 Sum_probs=106.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-----------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--------------
Q ss_conf 89999167987789999999855-----------72332112445443344678899885310013--------------
Q gi|254780215|r 31 LKMIAIAIKVKDFVPLIKLCQDY-----------PSSIFCSVGTHPCHAHEENEVLVDELVCLASH-------------- 85 (262)
Q Consensus 31 ~~~i~~~~~~~~~~~~~~l~~~~-----------p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~-------------- 85 (262)
..|++.|.|+.+.+..++-.+.- |-+-||.+-=+|+.+-.+...|.++-+++..=
T Consensus 118 ~~ILVSGHDL~dL~~LL~QTeg~GInVYTHgEMLPAH~YP~Lkky~hL~GnyG~AW~~Q~~eF~~FpGpIl~TTNCi~~P 197 (423)
T cd01914 118 KGILVSGHDLKDLEELLEQTEGTGVDVYTHGEMLPAHGYPELKKYPHLVGNYGGAWQNQQKEFARFPGPILMTTNCIIPP 197 (423)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 87999798989999999863799830772766541356810057875566884277758999731998889844777768
Q ss_pred -----CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECC-
Q ss_conf -----33210044677553322111024678999987664204-42033000233357999853100036753311214-
Q gi|254780215|r 86 -----PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITG-IPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFS- 158 (262)
Q Consensus 86 -----~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~-~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~Fs- 158 (262)
+|+.-.|.+|.+-..--. -.=|..-|+.|.+.. .|--.-. +-+.-.|.
T Consensus 198 ~~sY~dRifTt~~vg~pGv~hi~-----~~DFs~vI~~Al~~~g~~~~~~~--------------------~~i~~GF~h 252 (423)
T cd01914 198 RESYKDRIFTTGIVGWPGVKHIE-----GKDFSEVIEKAKELPGFPEEEES--------------------GTITTGFAH 252 (423)
T ss_pred CHHHCCCCEECCCCCCCCCEECC-----CCCCHHHHHHHHHCCCCCCCCCC--------------------CEEEECCCH
T ss_conf 35651035044676589973478-----88988999999858899877889--------------------858726348
Q ss_pred -CCHHHHHHH---HCCC---CEEECCCCCC-HHHHHHHHHHHHCCCCCCEEEEECC-CCCC-----------CCCC-CCC
Q ss_conf -640234432---1035---2020233221-1333223333210566717983078-6678-----------7776-887
Q gi|254780215|r 159 -SSQKLADIC---LELG---GYISFTGMIT-FPKYDALRAIARGIPMDRVLVETDS-PYIV-----------PVSC-QGK 217 (262)
Q Consensus 159 -G~~~~~~~~---l~~g---~y~S~~g~i~-~~~~~~~~e~v~~iPldriLlETDs-P~l~-----------p~~~-r~~ 217 (262)
--...+.+. ++.| -+|-++|.=- .+...=.+|+++++|.|.+.|-.-. -|-+ |.-. -|+
T Consensus 253 ~~vl~~Ad~iv~aVK~G~Ir~ffligGCDG~~~~R~Yyte~a~~~P~DtvILTl~CgKyRfn~ld~G~I~GiPRlLD~GQ 332 (423)
T cd01914 253 NQVLAVADKVVEAVKSGKIRHFFVVGGCDGRHKGRNYYTEFAEKLPKDTVILTLGCGKYRFNKLDLGDIGGIPRLLDAGQ 332 (423)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88987668999999648974699981268989986348999987899729986432233135677667588344323666
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 5882449999999998728998999
Q gi|254780215|r 218 RNEPAYVVNTAKALAKEKDVSYEDL 242 (262)
Q Consensus 218 ~n~P~~i~~~~~~iA~i~~~~~eei 242 (262)
=|.......++.++|+..++++.++
T Consensus 333 CNDsysai~iA~aLaeaf~~~VNdL 357 (423)
T cd01914 333 CNDSYSAIVIALALAEAFGCDVNDL 357 (423)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 5448899999999999868995447
No 142
>PRK02621 consensus
Probab=82.92 E-value=2.5 Score=22.87 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 2689999999986998999916
Q gi|254780215|r 16 EDRHDVIMRAHQANVLKMIAIA 37 (262)
Q Consensus 16 ~d~~~~i~~a~~~gv~~~i~~~ 37 (262)
.|..+++....+.|.+.+..+.
T Consensus 30 gdP~~~ak~~~~~gad~lhivD 51 (254)
T PRK02621 30 GDPVELACRYSQAGADELVFLD 51 (254)
T ss_pred CCHHHHHHHHHHCCCCEEEEEE
T ss_conf 8999999999985999999982
No 143
>PRK06361 hypothetical protein; Provisional
Probab=82.74 E-value=4.3 Score=21.35 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=51.5
Q ss_pred CHHHHHHHHCCCCEEECCCCCCHH-HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 402344321035202023322113-3322333321056671798307866787776887588244999999999872899
Q gi|254780215|r 160 SQKLADICLELGGYISFTGMITFP-KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVS 238 (262)
Q Consensus 160 ~~~~~~~~l~~g~y~S~~g~i~~~-~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~ 238 (262)
+.+.++.+.+.|..+-+|..-... .........+... =+|.+.|||=. |..++ ++. -.-.+|+-=+++
T Consensus 129 ~~e~a~~Aae~gtaLEINa~p~rld~~~~~~r~A~~~G-v~i~I~sDAH~--~~~l~-------~~~-~gv~~Arra~L~ 197 (216)
T PRK06361 129 TEEDAALAAENGVFLEITARKGHNLTNGHVARLAREAG-APLVINTDTHA--PSDLI-------TYE-TARKVALGAGLT 197 (216)
T ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCC-CEEEEECCCCC--CCCCC-------CHH-HHHHHHHHCCCC
T ss_conf 58999999981958999689776477799999999869-96999789998--00036-------889-999999984999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999984256
Q gi|254780215|r 239 YEDLMEETTKNALKLFSKI 257 (262)
Q Consensus 239 ~eei~~~~~~N~~~~f~~~ 257 (262)
.+++.+....+-..+.+|+
T Consensus 198 ~~dv~ntls~~~~~~~~~~ 216 (216)
T PRK06361 198 EAELKEALSNNPKLLLKLL 216 (216)
T ss_pred HHHHHHHHHHCHHHHHHHC
T ss_conf 9999999876999997309
No 144
>PRK02747 consensus
Probab=82.35 E-value=3.5 Score=21.89 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHHCCCCEEEEE
Q ss_conf 268999999998699899991
Q gi|254780215|r 16 EDRHDVIMRAHQANVLKMIAI 36 (262)
Q Consensus 16 ~d~~~~i~~a~~~gv~~~i~~ 36 (262)
.|..+.++...+.|.+.+..+
T Consensus 30 gdP~~~ak~~~~~Gadelh~v 50 (257)
T PRK02747 30 GDPVEAARAYDAAGADELCFL 50 (257)
T ss_pred CCHHHHHHHHHHCCCCEEEEE
T ss_conf 899999999998699989999
No 145
>KOG4245 consensus
Probab=81.55 E-value=4.7 Score=21.07 Aligned_cols=189 Identities=23% Similarity=0.326 Sum_probs=91.2
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999855723321124454433446788998853100133321004467755332211102467899998766420442
Q gi|254780215|r 46 LIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIP 125 (262)
Q Consensus 46 ~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~p 125 (262)
.+.-+++||+.. ..+|--|-++.+. ..++.++...+-.+.++ |||- +....+++.|. |--.-..|.++...
T Consensus 56 l~ae~~kfp~r~-v~lgtlpmn~~e~---avee~~rcvk~lg~~g~-eigs--hv~e~~ld~~d--~~ply~~~e~l~~~ 126 (297)
T KOG4245 56 LAAECQKFPDRF-VGLGTLPMNAPEL---AVEEMERCVKELGFKGF-EIGS--HVAEKDLDAQD--FFPLYAAAEELKCS 126 (297)
T ss_pred HHHHHHHCCHHC-CCCCCCCCCCHHH---HHHHHHHHHHHCCCCCE-EECC--CCCCCCCCHHH--HHHHHHHHHHHEEE
T ss_conf 899987433411-4557667757899---99999999997098835-4123--00312475577--76799998753246
Q ss_pred CEEECHHHHH------------------H-HHHHHHHHH----HC-CCCC---------------CCCEECCCCHHHHHH
Q ss_conf 0330002333------------------5-799985310----00-3675---------------331121464023443
Q gi|254780215|r 126 LVIHSRSADD------------------D-MAAILQEEM----KK-GPFP---------------FVIHCFSSSQKLADI 166 (262)
Q Consensus 126 v~iH~r~a~~------------------~-~l~iL~~~~----~~-~~~~---------------~i~H~FsG~~~~~~~ 166 (262)
+.+|--+.+- + ++.|-+-.+ .+ +..+ -|-|.|+-.++.--.
T Consensus 127 lfvhpwdmhmwdgrl~kywlpwlvgmpaeta~aics~img~i~~~fpklklcfahggga~p~~~grishg~n~rpdlca~ 206 (297)
T KOG4245 127 LFVHPWDMHMWDGRLAKYWLPWLVGMPAETAIAICSMIMGGIFEKFPKLKLCFAHGGGAFPFIRGRISHGFNMRPDLCAG 206 (297)
T ss_pred EEECCHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCCEEEEEECCCCCCCCCHHCC
T ss_conf 89641020030352676556777278669999999999704887574120541037866650322203676679531037
Q ss_pred HHCC------CCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
Q ss_conf 2103------5202023322113332233332105667179830786678777688758824499999999987289989
Q gi|254780215|r 167 CLEL------GGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYE 240 (262)
Q Consensus 167 ~l~~------g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~e 240 (262)
-..+ |.+.. ...+-.+ ..+.-++..+..|+|++-||-|+..- .-+|.-+ +-+.+..+.+
T Consensus 207 ~~~~~p~k~~g~~~t-dalvhdp--~alell~~tigkd~iilgtdypfplg------ele~gkl------iee~~~f~a~ 271 (297)
T KOG4245 207 DCKMAPKKLDGLFWT-DALVHDP--KALELLIDTIGKDHIILGTDYPFPLG------ELEPGKL------IEEMEEFDAE 271 (297)
T ss_pred CCCCCHHHHCCCHHH-HHHHCCC--HHHHHHHHHHCCCEEEECCCCCCCCC------CCCCCHH------HHHHCCCCHH
T ss_conf 688882440440101-3342481--88999997516540774168897576------6660157------7763334644
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998425687
Q gi|254780215|r 241 DLMEETTKNALKLFSKISE 259 (262)
Q Consensus 241 ei~~~~~~N~~~~f~~~~~ 259 (262)
.-.+..+.|+.+|.+ +.+
T Consensus 272 ~ke~l~~~nal~~l~-id~ 289 (297)
T KOG4245 272 DKEDLKAGNALAFLD-IDE 289 (297)
T ss_pred HHHHHHHCCCHHHCC-CCH
T ss_conf 477764034033306-304
No 146
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=81.51 E-value=4.7 Score=21.06 Aligned_cols=142 Identities=18% Similarity=0.213 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEEC------HH---HHHHHHH-HHHHHHHC-CCCCCCC-EECCCCHHHHHHHHCCCCEEEC
Q ss_conf 6789999876642044203300------02---3335799-98531000-3675331-1214640234432103520202
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHS------RS---ADDDMAA-ILQEEMKK-GPFPFVI-HCFSSSQKLADICLELGGYISF 176 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~------r~---a~~~~l~-iL~~~~~~-~~~~~i~-H~FsG~~~~~~~~l~~g~y~S~ 176 (262)
.+-+..-|+-..+.|.|+.||- .+ .+..+++ +|.....+ +..|+|+ |+=+.+.-..-+-.+.+.+-++
T Consensus 117 ~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~~Fi~~vl~pl~~~fP~LKIV~EHiTT~dav~~v~~~~~nlaATI 196 (344)
T COG0418 117 IEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPLRQRFPKLKIVLEHITTKDAVEYVKDANNNLAATI 196 (344)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCEEEEE
T ss_conf 78878999999971986897046577545611357878999999998658763699887150889999996486504673
Q ss_pred CC-------------CC---CH-----HH---HHHHHHHHHCCCCCCEEEEECCCCCCCCCCC---------CCCCCHHH
Q ss_conf 33-------------22---11-----33---3223333210566717983078667877768---------87588244
Q gi|254780215|r 177 TG-------------MI---TF-----PK---YDALRAIARGIPMDRVLVETDSPYIVPVSCQ---------GKRNEPAY 223 (262)
Q Consensus 177 ~g-------------~i---~~-----~~---~~~~~e~v~~iPldriLlETDsP~l~p~~~r---------~~~n~P~~ 223 (262)
++ .| .| ++ .+.+++++. -.-.|+.+-||| +|.+-. |--|.|..
T Consensus 197 T~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~-sg~~kfFlGtDS---APH~~~~Ke~~cgcAG~fsap~a 272 (344)
T COG0418 197 TPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAAT-SGHPKFFLGTDS---APHARSRKESACGCAGIFSAPFA 272 (344)
T ss_pred EHHHEEEEHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHH-CCCCCEEECCCC---CCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 14560242656632787861355120065456999999984-689727715898---88865441005666310153768
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999872899899999999999998425
Q gi|254780215|r 224 VVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 224 i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
++..++.--+ .-..+.+..=+..|..+|||-
T Consensus 273 l~~~AevFE~--~naL~~LeaF~S~nGp~fYgl 303 (344)
T COG0418 273 LPLYAEVFEE--ENALDNLEAFASDNGPKFYGL 303 (344)
T ss_pred HHHHHHHHHH--HCHHHHHHHHHHHCCCCEECC
T ss_conf 9999999987--267989998886548412156
No 147
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=81.27 E-value=4.8 Score=21.00 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=60.9
Q ss_pred EECCCCCHHHH-CCHHHHHHHHHHCCCCEEEEECCCH----------HHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCC
Q ss_conf 61388875652-2689999999986998999916798----------7789999999855723-3211244544334467
Q gi|254780215|r 5 THCHLLLPDFD-EDRHDVIMRAHQANVLKMIAIAIKV----------KDFVPLIKLCQDYPSS-IFCSVGTHPCHAHEEN 72 (262)
Q Consensus 5 ~H~HL~~~~~~-~d~~~~i~~a~~~gv~~~i~~~~~~----------~~~~~~~~l~~~~p~~-i~~a~GiHP~~~~~~~ 72 (262)
+=+||...... ..+.+.+.++.+.||..+++..-|+ .+.....++.+++.+. ....++.+|..-.+ .
T Consensus 80 ~i~Hltc~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~-s 158 (291)
T COG0685 80 PIPHLTCRDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPE-S 158 (291)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC-C
T ss_conf 134751468898999999999998188559994589877788786546899999999985689735899867887844-1
Q ss_pred HHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCCEE
Q ss_conf 88998853100133321004467755332211102467899998766420--442033
Q gi|254780215|r 73 EVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRIT--GIPLVI 128 (262)
Q Consensus 73 ~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~--~~pv~i 128 (262)
.+....+..+.. ++ +-|=|++-++.-.+. +.|++..+..... +.|++.
T Consensus 159 ~~~~~d~~~lkr--Kv----~aGAd~~iTQ~~fd~--e~~~~~~~~~~~~g~~~pI~~ 208 (291)
T COG0685 159 KDVKEDIKRLKR--KV----DAGADFFITQFFFDV--EAFERFAERVRAAGIDIPIIP 208 (291)
T ss_pred HHHHHHHHHHHH--HH----HCCCCEEEEEECCCH--HHHHHHHHHHHHCCCCCCEEE
T ss_conf 005789999999--98----658865764201689--999999999986389985562
No 148
>PRK01659 consensus
Probab=81.06 E-value=2.7 Score=22.69 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 2689999999986998999916
Q gi|254780215|r 16 EDRHDVIMRAHQANVLKMIAIA 37 (262)
Q Consensus 16 ~d~~~~i~~a~~~gv~~~i~~~ 37 (262)
.|..+++....+.|++.+..+.
T Consensus 30 gDP~~~ak~~~~~Gad~ihivD 51 (252)
T PRK01659 30 GDPVEIAAAYNEAGADELVFLD 51 (252)
T ss_pred CCHHHHHHHHHHCCCCEEEEEE
T ss_conf 8999999999987999999994
No 149
>PRK00830 consensus
Probab=80.62 E-value=3.2 Score=22.15 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=10.7
Q ss_pred HCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 2268999999998699899991
Q gi|254780215|r 15 DEDRHDVIMRAHQANVLKMIAI 36 (262)
Q Consensus 15 ~~d~~~~i~~a~~~gv~~~i~~ 36 (262)
..|.-+.+.+..+.|++.+..+
T Consensus 33 ~gdP~~~ak~~~~~gadelhiv 54 (273)
T PRK00830 33 AGDPVELAKRYYEDGADELVFL 54 (273)
T ss_pred CCCHHHHHHHHHHCCCCEEEEE
T ss_conf 8899999999998799989999
No 150
>KOG2584 consensus
Probab=79.72 E-value=5.4 Score=20.67 Aligned_cols=166 Identities=19% Similarity=0.187 Sum_probs=76.3
Q ss_pred CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE-EEC--HHHHHHHHHHHHH-HHHCCCCCCCCEECC-CCHH
Q ss_conf 2100446775533221110246789999876642044203-300--0233357999853-100036753311214-6402
Q gi|254780215|r 88 VVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLV-IHS--RSADDDMAAILQE-EMKKGPFPFVIHCFS-SSQK 162 (262)
Q Consensus 88 ~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~-iH~--r~a~~~~l~iL~~-~~~~~~~~~i~H~Fs-G~~~ 162 (262)
..+.|+.|=.-+.-.-+-+...++--+-+.+|.+.|.|+- +|. ..|.+ .+...++ -......++.-+++. |+.-
T Consensus 211 ~l~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~ncPlyvvhVmsksaa~-~Ia~aRk~g~~v~gepita~l~~dg~hy 289 (522)
T KOG2584 211 LLELGITGPEGHELSRPEELEAEATNRAITIARQANCPLYVVHVMSKSAAD-AIALARKKGRVVFGEPITASLGTDGSHY 289 (522)
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHH-HHHHHHHCCCEEECCCCHHHHCCCCHHH
T ss_conf 887178686644335844666789999999988628982058885263788-9999874384661341046544663432
Q ss_pred HHHHHHCCCCEEECCCCCCHH-HHHHHHHHHHCCCCCCEEEEEC-CCCCCCCCCCCCC---CCHHHHHHHHHHHHH----
Q ss_conf 344321035202023322113-3322333321056671798307-8667877768875---882449999999998----
Q gi|254780215|r 163 LADICLELGGYISFTGMITFP-KYDALRAIARGIPMDRVLVETD-SPYIVPVSCQGKR---NEPAYVVNTAKALAK---- 233 (262)
Q Consensus 163 ~~~~~l~~g~y~S~~g~i~~~-~~~~~~e~v~~iPldriLlETD-sP~l~p~~~r~~~---n~P~~i~~~~~~iA~---- 233 (262)
+-+.|...-+|+.-+|.-..+ ..+-+..+++.= +-=++-|| +||-+.+..=|+- --|.-+--+-+.++-
T Consensus 290 ~~~~w~~Aa~~v~sPPlr~d~~t~~~L~~lLa~g--~L~~tgSdhctf~~~qKalgKddFt~ip~GvnGvedrMsviwek 367 (522)
T KOG2584 290 WSKDWDHAAAFVTSPPLRPDPTTPDGLMDLLAEG--DLQLTGSDHCTFTTEQKALGKDDFTKIPNGVNGVEDRMSVIWEK 367 (522)
T ss_pred CCCCHHHCCEEEECCCCCCCCCCHHHHHHHHHCC--CCCEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEH
T ss_conf 3578102013545799888998878999998548--42003027877777887426676130877645420163233320
Q ss_pred ---HHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf ---72899899999999999998425
Q gi|254780215|r 234 ---EKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 234 ---i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
--.++...+...+..|+-+.||-
T Consensus 368 gv~~G~md~~~fVavtstnaAkifnl 393 (522)
T KOG2584 368 GVHSGKMDENRFVAVTSTNAAKIFNL 393 (522)
T ss_pred HCCCCCCCCCCEEEEECCCCHHHEEC
T ss_conf 00237567341799952663433340
No 151
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=79.56 E-value=4.6 Score=21.11 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=32.6
Q ss_pred HHHHHHHHHCCCCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99985310003675331121464-023443210352-020233221133322333321056
Q gi|254780215|r 138 AAILQEEMKKGPFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIP 196 (262)
Q Consensus 138 l~iL~~~~~~~~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP 196 (262)
++.|++....-+.+.|+|.=||. .++++++++.|. .+-|+..+..-=.+.+|+.+..=|
T Consensus 188 ~~~l~~I~~~~~iPLVLHGgSGi~~e~i~~ai~~Gi~KiNi~Tel~~a~~~~~r~~l~~np 248 (283)
T PRK07998 188 IPLLKRIAEVSPVPLVIHGGSGIPPDILRSFVNYRVAKVNIASDLRKAFITTVGKAYVNNH 248 (283)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCC
T ss_conf 9999998864798789869999999999999986986999586899999999999998687
No 152
>PRK02145 consensus
Probab=78.45 E-value=4.6 Score=21.13 Aligned_cols=22 Identities=9% Similarity=0.136 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 2689999999986998999916
Q gi|254780215|r 16 EDRHDVIMRAHQANVLKMIAIA 37 (262)
Q Consensus 16 ~d~~~~i~~a~~~gv~~~i~~~ 37 (262)
.|..+++....+.|++.+..+-
T Consensus 31 gdP~~~a~~~~~~GadelhivD 52 (257)
T PRK02145 31 GDPVEIARRYDEQGADELTFLD 52 (257)
T ss_pred CCHHHHHHHHHHCCCCEEEEEE
T ss_conf 8999999999987999899997
No 153
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=78.41 E-value=5.9 Score=20.41 Aligned_cols=146 Identities=16% Similarity=0.015 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCHHH-------HHHHHHHCCC-
Q ss_conf 268999999998699899991679877899999998557233211244544--334467889-------9885310013-
Q gi|254780215|r 16 EDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPC--HAHEENEVL-------VDELVCLASH- 85 (262)
Q Consensus 16 ~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~--~~~~~~~~~-------~~~l~~l~~~- 85 (262)
+|..++++-|..-||. |++-.|...-..+ ..+.||+....+..-.+. ...-..+.. ++++..+...
T Consensus 82 ~di~eiv~YA~~rgI~--VIPEID~PGH~~a--~~~~~pel~~~~~~~~~~~~~ld~~~~~t~~fl~~v~~Ev~~lF~~~ 157 (326)
T cd06564 82 EEFKELIAYAKDRGVN--IIPEIDSPGHSLA--FTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPK 157 (326)
T ss_pred HHHHHHHHHHHHCCCE--EEECCCCCHHHHH--HHHHCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999984998--9863678337899--99859563478877888877568998769999999999999866787
Q ss_pred CCCCEECCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHH
Q ss_conf 3321004467755332-211102467899998766420442033000233357999853100036753311214640234
Q gi|254780215|r 86 PRVVAIGETGLDRYHN-AHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLA 164 (262)
Q Consensus 86 ~~~~aIGEiGLD~~~~-~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~ 164 (262)
.+.+= ||=|=+.. ....+.+..++.+-.+..++.|+.++ +++|.+.--.. ....+..++++.++++...+
T Consensus 158 ~~yiH---iGGDE~~~~~~~~~~~~~f~~~~~~~v~~~gk~~~-----~W~d~~~~~~~-~~~~~~~~iv~~W~~~~~~~ 228 (326)
T cd06564 158 SDTVH---IGADEYAGDAGYAEAFRAYVNDLAKYVKDKGKTPR-----VWGDGIYYKGD-TTVLSKDVIINYWSYGWADP 228 (326)
T ss_pred CCEEE---ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE-----EECCCCCCCCC-CCCCCCCCEEEECCCCCHHH
T ss_conf 88898---63113888898799999999999999998698589-----97521046887-77799985899817972369
Q ss_pred HHHHCCCCEE
Q ss_conf 4321035202
Q gi|254780215|r 165 DICLELGGYI 174 (262)
Q Consensus 165 ~~~l~~g~y~ 174 (262)
+++++.|+-+
T Consensus 229 ~~~~~~G~~v 238 (326)
T cd06564 229 KELLNKGYKI 238 (326)
T ss_pred HHHHHCCCCE
T ss_conf 9999879969
No 154
>pfam08965 DUF1870 Domain of unknown function (DUF1870). This domain is found in a set of hypothetical bacterial proteins.
Probab=78.36 E-value=2.5 Score=22.92 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH----HHHHHHHHHHHHH
Q ss_conf 6887588244999999999872899899999999----9999984256875
Q gi|254780215|r 214 CQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETT----KNALKLFSKISEC 260 (262)
Q Consensus 214 ~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~----~N~~~~f~~~~~~ 260 (262)
-+|..+-|..|......+...++.-...+.+.+. .|++|+|+-++..
T Consensus 36 E~G~~~IP~~i~~~~~~m~~~Rk~~i~aii~kinnrIGnnTmR~f~dl~aF 86 (117)
T pfam08965 36 EKGDIAIPDEVEAKLRKLNQIRNKVLNAILSEINNRIGNNTYRYYPDLEAF 86 (117)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHH
T ss_conf 758988999999999999999999999999999877541312423579999
No 155
>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]
Probab=78.34 E-value=4.6 Score=21.12 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=28.4
Q ss_pred EEEEECCCCCHHHH-----CCHHHHH--------HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf 16861388875652-----2689999--------999986998999916798778999999985572
Q gi|254780215|r 2 LIDTHCHLLLPDFD-----EDRHDVI--------MRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPS 55 (262)
Q Consensus 2 ~iD~H~HL~~~~~~-----~d~~~~i--------~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~ 55 (262)
+||-||||+-..+. +|.-++. .-++.+||.--.+.| +-.+.++-...++.+|.
T Consensus 27 IidpH~Hl~P~~i~en~~F~d~t~l~l~~DHY~wRmmrs~GV~e~~itg-d~sdrEkw~afa~~~~~ 92 (463)
T COG1904 27 IIDPHCHLEPQEIAENEAFPDPTSLWLKGDHYKWRMMRSNGVAERLITG-DTSDREKWRAFAKTVPL 92 (463)
T ss_pred EECCCCCCCHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHCCC-CCCHHHHHHHHHHHHHH
T ss_conf 3477679998999636789998997306508999999875970642589-98769999999974216
No 156
>TIGR01885 Orn_aminotrans ornithine--oxo-acid transaminase; InterPro: IPR010164 Ornithine aminotransferase catalyses the conversion of L-ornithine and a 2-oxo acid to L-glutamate 5-semialdehyde and an L-amino acid. This enzyme is found in low-GC bacteria, where it is responsible for the fourth step in arginine biosynthesis, and in the mitochondrial matrix of eukaryotes, where it controls L-ornithine levels in tissues. In human hereditary ornithine aminotransferase deficiency, the elevated levels of intraocular concentrations of ornithine are responsible for gyrate atrophy, which affects the CNS and peripheral nervous system ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding.
Probab=78.04 E-value=4.7 Score=21.09 Aligned_cols=194 Identities=14% Similarity=0.128 Sum_probs=107.5
Q ss_pred CCCHHHHCCHHHHHHHH--HHCC--CCEEEEECCCHHHHHHHHHHHHHCCCC----------CCCCCC-CC---------
Q ss_conf 88756522689999999--9869--989999167987789999999855723----------321124-45---------
Q gi|254780215|r 9 LLLPDFDEDRHDVIMRA--HQAN--VLKMIAIAIKVKDFVPLIKLCQDYPSS----------IFCSVG-TH--------- 64 (262)
Q Consensus 9 L~~~~~~~d~~~~i~~a--~~~g--v~~~i~~~~~~~~~~~~~~l~~~~p~~----------i~~a~G-iH--------- 64 (262)
|+++.|.+|.-....+. .--| .++++.+.|-.+..+.+.+||++|.=. |..|.| +|
T Consensus 76 L~Sraf~nd~lg~~~~~~t~LfgGk~~~vL~mNTGaEAvEtA~KLAR~WgY~~K~ip~~kA~ii~~~GNFhGRTlgA~S~ 155 (426)
T TIGR01885 76 LTSRAFHNDVLGEFAKYLTKLFGGKYEKVLPMNTGAEAVETALKLARKWGYEVKGIPRNKAKIIAASGNFHGRTLGAVSA 155 (426)
T ss_pred CHHHHHHCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 10276606035789999997549951056045687347999999999744135785576238998538873303544320
Q ss_pred ---------------C-----CCCCCCCHHHHHHHHHHCCCC-----CCCEE------CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf ---------------4-----433446788998853100133-----32100------4467755332211102467899
Q gi|254780215|r 65 ---------------P-----CHAHEENEVLVDELVCLASHP-----RVVAI------GETGLDRYHNAHTIEEQKVVFL 113 (262)
Q Consensus 65 ---------------P-----~~~~~~~~~~~~~l~~l~~~~-----~~~aI------GEiGLD~~~~~~~~e~Q~~vF~ 113 (262)
| +....-.-..++.|+.-+++| .+.|| ||-|. - -|.+ ..|.
T Consensus 156 Std~e~~k~~FGPflPnvasGhgf~~iPYgd~EAl~~aL~~P~~~GDnVAA~i~EPIQGEAGv---v--vPp~---gYl~ 227 (426)
T TIGR01885 156 STDSETSKKGFGPFLPNVASGHGFRKIPYGDLEALRKALQDPKKTGDNVAAFILEPIQGEAGV---V--VPPP---GYLP 227 (426)
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCE---E--ECCC---CHHH
T ss_conf 267212006787967743357852115588878999997275778886899995040354436---8--4896---3578
Q ss_pred HHHHHHHHCCCCCEEECHHH-HHHHHHHHHHHHHCCCCCCCCEECC--CCHHH--HHHHHCCCCEEECCCCCCHHHHHHH
Q ss_conf 99876642044203300023-3357999853100036753311214--64023--4432103520202332211333223
Q gi|254780215|r 114 RHIEASRITGIPLVIHSRSA-DDDMAAILQEEMKKGPFPFVIHCFS--SSQKL--ADICLELGGYISFTGMITFPKYDAL 188 (262)
Q Consensus 114 ~ql~lA~e~~~pv~iH~r~a-~~~~l~iL~~~~~~~~~~~i~H~Fs--G~~~~--~~~~l~~g~y~S~~g~i~~~~~~~~ 188 (262)
.-=+|++++|--.++=-.+. -+.|=++| -.||++ =.+++ +-++|.=|. +=||.+++
T Consensus 228 ~V~~LC~~~nVLfI~DEiQTGlGRTGk~l-----------a~dh~~aev~PDi~lLGKALsGGv-~PiSa~la------- 288 (426)
T TIGR01885 228 GVRALCKEHNVLFIADEIQTGLGRTGKLL-----------ACDHENAEVKPDIVLLGKALSGGV-YPISAVLA------- 288 (426)
T ss_pred HHHHHHHHCCCEEEEEEECCCCCHHHHHH-----------HHHCCCCEECCCCEEEEHHHCCCC-CCEEEEEE-------
T ss_conf 99998655187289820003840254533-----------101058820450335112345894-62243666-------
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 333210566717983078667877768875882449999999998728998
Q gi|254780215|r 189 RAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSY 239 (262)
Q Consensus 189 ~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~ 239 (262)
..|=+++=+|+||.=-..|-| .|.--.-.+..|-=+.+..+
T Consensus 289 -------~~dim~vl~PGPF~HGSTfGG---NPLAcavaiAaLeVL~~ekL 329 (426)
T TIGR01885 289 -------DDDIMSVLKPGPFEHGSTFGG---NPLACAVAIAALEVLEEEKL 329 (426)
T ss_pred -------CCCEEECCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHHCCCH
T ss_conf -------464012117648656776887---57899999999998740450
No 157
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=77.99 E-value=6.1 Score=20.33 Aligned_cols=125 Identities=17% Similarity=0.053 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHCCCCCEEECH---HHHHH-HHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHH
Q ss_conf 899998766420442033000---23335-79998531000367533112146402344321035202023322113332
Q gi|254780215|r 111 VFLRHIEASRITGIPLVIHSR---SADDD-MAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYD 186 (262)
Q Consensus 111 vF~~ql~lA~e~~~pv~iH~r---~a~~~-~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~ 186 (262)
.++...++|++++.|+.+|.- +..+. -++-+.. .+ ...+.||--=+.+.++.+.+.|..++..|.....-+.
T Consensus 126 ~~~~~~~~a~~~~~~i~~H~~E~~~~~~~~~~~~~~~---l~-~~ll~H~v~l~d~ei~lla~~g~~vahcP~SN~~lg~ 201 (263)
T cd01305 126 DLEDILELLRRRGKLFAIHASETRESVGMTDIERALD---LE-PDLLVHGTHLTDEDLELVRENGVPVVLCPRSNLYFGV 201 (263)
T ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHH---CC-CCEEEECCCCCHHHHHHHHHCCCCEEECHHHHHHHCC
T ss_conf 5999999999779968988689712036559999984---69-9889973789999999999749968988487876447
Q ss_pred ---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Q ss_conf ---2333321056671798307866787776887588244999999999872----8998999999999999
Q gi|254780215|r 187 ---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEK----DVSYEDLMEETTKNAL 251 (262)
Q Consensus 187 ---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~----~~~~eei~~~~~~N~~ 251 (262)
.++++++. --++-|=||+.- -|. .++....+..+.+. .++.+++.+--+.|.-
T Consensus 202 G~~pi~~~~~~--Gi~v~LGTD~~a---------sn~-~dm~~emr~a~~~~~~~~~~~a~~vl~mAT~~GA 261 (263)
T cd01305 202 GIPPVAELLKL--GIKVLLGTDNVM---------VNE-PDMWAEMEFLAKYSRLQGYLSPLEILRMATVNAA 261 (263)
T ss_pred CCCCHHHHHHC--CCCEEEECCCCC---------CCC-CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf 88888999978--994899648886---------688-1699999999998576789999999999811302
No 158
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=77.90 E-value=6.1 Score=20.31 Aligned_cols=154 Identities=14% Similarity=0.029 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHC--CCCEEEEEC-----CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCC
Q ss_conf 689999999986--998999916-----798778999999985572332112445443344678899885310-013332
Q gi|254780215|r 17 DRHDVIMRAHQA--NVLKMIAIA-----IKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCL-ASHPRV 88 (262)
Q Consensus 17 d~~~~i~~a~~~--gv~~~i~~~-----~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l-~~~~~~ 88 (262)
.+..+++..... ..+.++.+| -+++++.+..++.++.+-.+++.-|=|- ..+...+.+... .....-
T Consensus 41 ~l~~vl~~i~~~~~~~D~viiTGDLs~dgs~esY~~l~~~L~~l~~P~~~lPGNHD-----~~~~m~~~l~~~~~~~~~~ 115 (275)
T PRK11148 41 SYQAVLEAIRAEQHEFDLIVATGDLAQDHSAEAYQHFAEGIAPLRKPCVWLPGNHD-----FQPAMYSALQDAGISPAKH 115 (275)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC-----CHHHHHHHHCCCCCCCCCE
T ss_conf 99999999984599988999764025899999999999999726999899588762-----3899998603266786532
Q ss_pred CEECC----CCCCCCCC----CCCCHHHHHHHHHHHHHHHHCCCCCEEEC----HH----------HHHHHHHHHHHHHH
Q ss_conf 10044----67755332----21110246789999876642044203300----02----------33357999853100
Q gi|254780215|r 89 VAIGE----TGLDRYHN----AHTIEEQKVVFLRHIEASRITGIPLVIHS----RS----------ADDDMAAILQEEMK 146 (262)
Q Consensus 89 ~aIGE----iGLD~~~~----~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~----r~----------a~~~~l~iL~~~~~ 146 (262)
+-+|+ |+||-... ..--+.|.+.++++|+-+.+...-|.+|- .+ -.++++++|+.+.
T Consensus 116 v~~~~~w~iI~LDS~~~g~~~G~L~~~qL~wL~~~L~~~~~~~~lV~lHHpPv~ig~~wmD~~~L~N~~~l~~il~~~~- 194 (275)
T PRK11148 116 VLIGEHWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERHTLVLLHHHPLPAGSAWLDQHSLRNAHELAQVLAKFP- 194 (275)
T ss_pred EEECCCEEEEEEECCCCCCCCCEECHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHCCCHHHHHHHHHHCC-
T ss_conf 7964987999997999997770839999999999997478998799992798457983200111879999999997489-
Q ss_pred CCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCC
Q ss_conf 03675331121464023443210352020233221
Q gi|254780215|r 147 KGPFPFVIHCFSSSQKLADICLELGGYISFTGMIT 181 (262)
Q Consensus 147 ~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~ 181 (262)
. |-|-|.|=.-+.-...-.|.-+.-+|..|
T Consensus 195 --~---Vk~v~~GHvHq~~~~~~~gi~~~~tPSTc 224 (275)
T PRK11148 195 --N---VKAILCGHIHQELDLDWNGRRLLATPSTC 224 (275)
T ss_pred --C---EEEEEECCCCCHHHHEECCEEEEECCCCC
T ss_conf --9---04999626575677069999999748721
No 159
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=76.63 E-value=6.1 Score=20.32 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=18.5
Q ss_pred HCCHHHHHHHHHHCCCCEEEEECCCH------HHHHHHHHHHHH
Q ss_conf 22689999999986998999916798------778999999985
Q gi|254780215|r 15 DEDRHDVIMRAHQANVLKMIAIAIKV------KDFVPLIKLCQD 52 (262)
Q Consensus 15 ~~d~~~~i~~a~~~gv~~~i~~~~~~------~~~~~~~~l~~~ 52 (262)
..|..+++....+.|++.+..+..+. ..+.-+.++++.
T Consensus 29 ~gdP~~~ak~~~~~g~d~lhivDld~a~~~~~~n~~~I~~i~~~ 72 (232)
T TIGR03572 29 IGDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEE 72 (232)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 88999999999986999999996876434882179999999997
No 160
>pfam02614 UxaC Glucuronate isomerase. This is a family of Glucuronate isomerases also known as D-glucuronate isomerase, uronic isomerase, uronate isomerase, or uronic acid isomerase, EC:5.3.1.12. This enzyme catalyses the reactions: D-glucuronate <= D-fructuronate and D-galacturonate <= D-tagaturonate. It is not however clear where the experimental evidence for this functional assignment came from and thus this family has no literature reference.
Probab=75.88 E-value=3.7 Score=21.77 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999842
Q gi|254780215|r 240 EDLMEETTKNALKLFS 255 (262)
Q Consensus 240 eei~~~~~~N~~~~f~ 255 (262)
+-+..+++.|++++|+
T Consensus 446 ~~v~di~y~na~~~F~ 461 (465)
T pfam02614 446 ELVKDICYNNAKRYFG 461 (465)
T ss_pred HHHHHHHHHCHHHHHC
T ss_conf 9999988758999838
No 161
>PRK09819 alpha-mannosidase; Provisional
Probab=75.00 E-value=2.7 Score=22.72 Aligned_cols=48 Identities=6% Similarity=0.026 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHHCCCCCC
Q ss_conf 7789999999855723321124454433446---78899885310013332
Q gi|254780215|r 41 KDFVPLIKLCQDYPSSIFCSVGTHPCHAHEE---NEVLVDELVCLASHPRV 88 (262)
Q Consensus 41 ~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~---~~~~~~~l~~l~~~~~~ 88 (262)
..|..+++|.++||+..|.++.=.+....++ .++..++++++..+.+.
T Consensus 31 rt~~~vl~lme~~pey~f~~~~~Q~~~ledy~~~~Pe~~erIk~~V~eGr~ 81 (874)
T PRK09819 31 NNMEEILCRLEQDNEYKYYVLDGQTALLEDYLAVKPEDKDRVKKLVEAGRL 81 (874)
T ss_pred HHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCE
T ss_conf 999999999976889752005542999999988693069999999985986
No 162
>pfam03063 Prismane Prismane/CO dehydrogenase family. This family includes both hybrid-cluster proteins and the beta chain of carbon monoxide dehydrogenase. The hybrid-cluster proteins contain two Fe/S centres - a [4Fe-4S] cubane cluster, and a hybrid [4Fe-2S-2O] cluster. The physiological role of this protein is as yet unknown, although a role in nitrate/nitrite respiration has been suggested. The prismane protein from Escherichia coli was shown to contain hydroxylamine reductase activity (NH2OH + 2e + 2 H+ - NH3 + H2O). This activity is rather low. Hydroxylamine reductase activity was also found in CO-dehydrogenase in which the active site Ni was replaced by Fe. The CO dehydrogenase contains a Ni-3Fe-2S-3O centre.
Probab=74.66 E-value=7.4 Score=19.75 Aligned_cols=90 Identities=21% Similarity=0.191 Sum_probs=57.3
Q ss_pred CCEECCCCHHHHHHHHCCC---CEEECCCCCCHHHHH-HHHHHHHCC-CCCCEEEEEC--------CCCCCC--------
Q ss_conf 3112146402344321035---202023322113332-233332105-6671798307--------866787--------
Q gi|254780215|r 153 VIHCFSSSQKLADICLELG---GYISFTGMITFPKYD-ALRAIARGI-PMDRVLVETD--------SPYIVP-------- 211 (262)
Q Consensus 153 i~H~FsG~~~~~~~~l~~g---~y~S~~g~i~~~~~~-~~~e~v~~i-PldriLlETD--------sP~l~p-------- 211 (262)
++.-+.|+.+.+-..+..| -.|.+.|.-.++... ...++++.+ |.|-|++-|= .-++.|
T Consensus 295 il~~~gg~~~~lid~I~~G~Irgv~~v~GC~n~~~~~~~~~~~akeli~~d~lVlt~GC~~~~~~~~gl~~~~a~~~aG~ 374 (477)
T pfam03063 295 VLAALGGSLDPLIDAIKSGKIRGFVLVVGCDNAKPGRDYYTELAKELIPRDILVLTTGCAKYRFNKLGLGDIEAAELAGD 374 (477)
T ss_pred HHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCHHHHHCCCC
T ss_conf 99985467078999997499872799964899987644899999986669879990616766665459998555633689
Q ss_pred ----CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf ----7768875882449999999998728998999
Q gi|254780215|r 212 ----VSCQGKRNEPAYVVNTAKALAKEKDVSYEDL 242 (262)
Q Consensus 212 ----~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei 242 (262)
.-.=|+=|.-+.+..++..+|+..++++.++
T Consensus 375 Glp~vL~~GsC~D~~r~~~ia~alA~~lg~di~dL 409 (477)
T pfam03063 375 GLPPVLDMGQCNDNYRAIVIALALAEALGVDINDL 409 (477)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99871404245607999999999999858991106
No 163
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=74.58 E-value=6.6 Score=20.08 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=30.6
Q ss_pred CCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 675331121464-023443210352-020233221133322333321056
Q gi|254780215|r 149 PFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIP 196 (262)
Q Consensus 149 ~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP 196 (262)
+.+.|+|.=||. .+++++.+++|. .+-+...+-+-=...+|+.+..=|
T Consensus 242 ~vpLVlHGgSGvp~e~i~~ai~~GV~KiNIdTdlq~Aft~~vr~~~~~np 291 (340)
T cd00453 242 SLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANE 291 (340)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 87457417889999999999982965323560889999999999998591
No 164
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=74.49 E-value=7.5 Score=19.72 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=62.9
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC-CC--------------CCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 9999986998999916798778999999985572-33--------------21124454433446788998853100133
Q gi|254780215|r 22 IMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPS-SI--------------FCSVGTHPCHAHEENEVLVDELVCLASHP 86 (262)
Q Consensus 22 i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~-~i--------------~~a~GiHP~~~~~~~~~~~~~l~~l~~~~ 86 (262)
+=+....||.+++-+++++.+..-+..+|....- ++ +.++-+||+... ......+.+.. ..=.
T Consensus 58 vC~ll~~GV~AIFGPss~~~s~~~v~siC~al~IPhi~~~~~~~~~~~~~~~~sinl~P~~~~-ls~A~~dlv~~-~~W~ 135 (333)
T cd06394 58 MCQILPKGVVSVLGPSSSPASSSIVSHICGEKEIPHFKVGPEETPKLQYLRFASVNLHPSNED-ISVAVAGILNS-FNYP 135 (333)
T ss_pred HHHHHHHCCEEEECCCCCHHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCCCCEEEECCCHHH-HHHHHHHHHHH-CCCC
T ss_conf 998786385799899996657999999844679980861521056654445654883599899-99999999997-6996
Q ss_pred CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHH
Q ss_conf 32100446775533221110246789999876642044203300023335799985310003675331121464023443
Q gi|254780215|r 87 RVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADI 166 (262)
Q Consensus 87 ~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~ 166 (262)
++.-| |.+ +.-..-+..-|+.....+-++.+-..+...+.-.+|++.......++|++| +.+.+..
T Consensus 136 ~ftii-------Ye~----~~~L~rLq~ll~~~~~~~~~i~vr~l~~~~d~r~vLkeIk~~~~~~iIiDc---~~e~~~~ 201 (333)
T cd06394 136 TASLI-------CAK----AECLLRLEELLRQFLISKETLSVRMLDDSRDPTPLLKEIRDDKTATIIIDA---NASMSHT 201 (333)
T ss_pred EEEEE-------EEC----CHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEC---CHHHHHH
T ss_conf 69999-------707----356899999987216789807999878899867999999857774799988---7888999
Q ss_pred HHC
Q ss_conf 210
Q gi|254780215|r 167 CLE 169 (262)
Q Consensus 167 ~l~ 169 (262)
+++
T Consensus 202 iLk 204 (333)
T cd06394 202 ILL 204 (333)
T ss_pred HHH
T ss_conf 999
No 165
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=74.46 E-value=6.4 Score=20.19 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=14.3
Q ss_pred HCCHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 2268999999998699899991679
Q gi|254780215|r 15 DEDRHDVIMRAHQANVLKMIAIAIK 39 (262)
Q Consensus 15 ~~d~~~~i~~a~~~gv~~~i~~~~~ 39 (262)
..|..+.++...+.|++.+..+-.+
T Consensus 30 ~gdP~~~a~~~~~~Gad~lhlvDld 54 (252)
T PRK13597 30 AGDPVEAARAYDEAGADELVFLDIS 54 (252)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 8899999999998699999999564
No 166
>PRK08185 hypothetical protein; Provisional
Probab=74.40 E-value=7.5 Score=19.71 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=33.4
Q ss_pred HHHHHHHHHCCCCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHC
Q ss_conf 99985310003675331121464-023443210352-0202332211333223333210
Q gi|254780215|r 138 AAILQEEMKKGPFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARG 194 (262)
Q Consensus 138 l~iL~~~~~~~~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~ 194 (262)
+++|++....-..+.++|.=||. .+++++.+++|. .+-|+..+...=.+.+++.+..
T Consensus 187 ~~~l~~I~~~~~vPLVLHGgSG~~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~~~~l~~ 245 (283)
T PRK08185 187 MDILKEINERVDIPLVLHGGSANPDAEIAESVTLGVGKINISSDMKYAFFQKVREILVA 245 (283)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 89999999864999897589999999999999869379984867999999999999985
No 167
>PRK03220 consensus
Probab=74.23 E-value=5.4 Score=20.66 Aligned_cols=38 Identities=3% Similarity=0.015 Sum_probs=21.0
Q ss_pred HCCHHHHHHHHHHCCCCEEEEECCC------HHHHHHHHHHHHH
Q ss_conf 2268999999998699899991679------8778999999985
Q gi|254780215|r 15 DEDRHDVIMRAHQANVLKMIAIAIK------VKDFVPLIKLCQD 52 (262)
Q Consensus 15 ~~d~~~~i~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~ 52 (262)
..|..+++....+.|++.+..+-.+ ...++-..+++++
T Consensus 30 ~gdP~~~a~~~~~~G~d~lhivDld~a~~g~~~n~~~I~~i~~~ 73 (257)
T PRK03220 30 AGDPVELAAVYDAEGADELTFLDVTASSSGRATMLDVVRRTAEQ 73 (257)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 88999999999986999899990888756763079999999850
No 168
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=73.71 E-value=5.3 Score=20.71 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=25.4
Q ss_pred CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEE
Q ss_conf 91686138887565226899999999869989999
Q gi|254780215|r 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIA 35 (262)
Q Consensus 1 M~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~ 35 (262)
|.+|-|||-....-.-...+++++|...|+..+-.
T Consensus 2 ~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~vlAi 36 (258)
T COG0613 2 MKADLHVHTTASDGGLTPREVVERAKAKGVDVLAI 36 (258)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 73543371267898679899999999779977997
No 169
>PRK04281 consensus
Probab=73.34 E-value=8 Score=19.54 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 2689999999986998999916
Q gi|254780215|r 16 EDRHDVIMRAHQANVLKMIAIA 37 (262)
Q Consensus 16 ~d~~~~i~~a~~~gv~~~i~~~ 37 (262)
.|..+++....+.|++.+..+-
T Consensus 30 gdP~~~ak~~~~~GadelhivD 51 (254)
T PRK04281 30 GDPVEAAKRYNGEGADELTFLD 51 (254)
T ss_pred CCHHHHHHHHHHCCCCEEEEEE
T ss_conf 8999999999986999999996
No 170
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=73.01 E-value=8.1 Score=19.49 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHHHHHHHHCCCCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99985310003675331121464-023443210352-020233221133322333321056
Q gi|254780215|r 138 AAILQEEMKKGPFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIP 196 (262)
Q Consensus 138 l~iL~~~~~~~~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP 196 (262)
+++|++....-+.+.++|+=||. .+++++++.+|. .+-|+..+...=.+.+++.++.-|
T Consensus 189 ~d~L~~I~~~~~iPLVLHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~r~~~~~~~ 249 (281)
T PRK06806 189 LDRLQEINDNVHIPLVLHGGSGISPEDFKQCIQHGIRKINVATATFNNVITAVNNLVLNTP 249 (281)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999972899989649999999999999986983898675789999999999986089
No 171
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=72.67 E-value=8.3 Score=19.44 Aligned_cols=142 Identities=11% Similarity=0.097 Sum_probs=63.0
Q ss_pred HHHHHHHHHCCCCEEEEECCC-HHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCC--HHHHHHHH-------------H
Q ss_conf 999999998699899991679-87789999999855723-3211244544334467--88998853-------------1
Q gi|254780215|r 19 HDVIMRAHQANVLKMIAIAIK-VKDFVPLIKLCQDYPSS-IFCSVGTHPCHAHEEN--EVLVDELV-------------C 81 (262)
Q Consensus 19 ~~~i~~a~~~gv~~~i~~~~~-~~~~~~~~~l~~~~p~~-i~~a~GiHP~~~~~~~--~~~~~~l~-------------~ 81 (262)
...+.++.+.|...++.+-++ .++-+.+.+.++ ||.. ....-+.++. ..+. .+..+... -
T Consensus 74 ~~~i~~~LD~Ga~GiivP~V~t~eea~~~v~a~k-ypP~G~Rg~~~~~r~--~~yg~~~~y~~~~n~~~~vi~qIEt~~a 150 (249)
T TIGR03239 74 PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATR-YPPEGIRGVSVSHRS--NRYGTVPDYFATINDNITVLVQIESQKG 150 (249)
T ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHCCEEEEEECCHHH
T ss_conf 7899999708998789517455999999999734-499999888766321--1247706999998644278999658899
Q ss_pred HCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC---HHHHHHHHHHHHHHHHCCCCCCCCEECC
Q ss_conf 0013332100446775533221110246789999876642044203300---0233357999853100036753311214
Q gi|254780215|r 82 LASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS---RSADDDMAAILQEEMKKGPFPFVIHCFS 158 (262)
Q Consensus 82 l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~---r~a~~~~l~iL~~~~~~~~~~~i~H~Fs 158 (262)
+.+-+++.+| =|+|...- =--+|+..++.|=.... .++.+++++..++ .+. ..-.|.
T Consensus 151 v~nldeI~av--~GvD~ifi------------GP~DLs~slG~~g~~~~p~v~~ai~~v~~~~~~---~gk---~~Gi~~ 210 (249)
T TIGR03239 151 VDNVDEIAAV--DGVDGIFV------------GPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAA---HGK---PCGILA 210 (249)
T ss_pred HHHHHHHHCC--CCCCEEEE------------CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH---CCC---CEEEEC
T ss_conf 9879999678--99888998------------848999876999999997999999999999998---599---669827
Q ss_pred CCHHHHHHHHCCCC-EEECCCCCCHH
Q ss_conf 64023443210352-02023322113
Q gi|254780215|r 159 SSQKLADICLELGG-YISFTGMITFP 183 (262)
Q Consensus 159 G~~~~~~~~l~~g~-y~S~~g~i~~~ 183 (262)
++.+.+++++++|+ +|+++..+.+-
T Consensus 211 ~~~~~~~~~~~~G~~~i~~g~D~~~l 236 (249)
T TIGR03239 211 PVEADARRYLEWGATFVAVGSDLGVF 236 (249)
T ss_pred CCHHHHHHHHHCCCCEEEEHHHHHHH
T ss_conf 99999999998699899966899999
No 172
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=72.60 E-value=8.3 Score=19.43 Aligned_cols=144 Identities=19% Similarity=0.160 Sum_probs=82.6
Q ss_pred CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEECC--CC
Q ss_conf 33210044677553322111024678999987664204-420330002--33357999853100036753311214--64
Q gi|254780215|r 86 PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITG-IPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHCFS--SS 160 (262)
Q Consensus 86 ~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~-~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~Fs--G~ 160 (262)
..++|||=.|-+.. ...+ ..-|......|++.+ +++.+|+=. ..+.+.+.+. .. + .-|=|++. .+
T Consensus 134 ~~vvGidl~G~e~~-~~~~----~~~f~~~~~~a~~~g~l~~t~HaGE~~~~~~i~~al~-l~---a-~RIGHG~~~~~d 203 (305)
T cd00443 134 NYVVGIDLVGDESK-GENP----LRDFYSYYEYARRLGLLGLTLHCGETGNREELLQALL-LL---P-DRIGHGIFLLKH 203 (305)
T ss_pred CCEEEEEEECCCCC-CCCC----HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH-HH---H-HHCCCHHHHCCH
T ss_conf 94899996256667-8898----6999999999996499835641587797789999998-45---5-522531211318
Q ss_pred HHHHHHHHCCCCEEECCCCCCHH-------HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 02344321035202023322113-------33223333210566717983078667877768875882449999999998
Q gi|254780215|r 161 QKLADICLELGGYISFTGMITFP-------KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAK 233 (262)
Q Consensus 161 ~~~~~~~l~~g~y~S~~g~i~~~-------~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~ 233 (262)
++.++.+.+.+.-+-+-|..... ..--++..++. -=.+-+-||-|-++- ..+..=+..+++
T Consensus 204 ~~L~~~l~~~~I~lEvCPtSN~~~~~~~~~~~HP~~~l~~~--Gv~vtinTDDp~~f~----------t~Ls~Ey~~~~~ 271 (305)
T cd00443 204 PELIYLVKLRNIPIEVCPTSNVVLGTVQSYEKHPFMRFFKA--GLPVSLSTDDPGIFG----------TSLSEEYSLAAK 271 (305)
T ss_pred HHHHHHHHHCCCEEEECCCCCHHCCCCCCCCCCHHHHHHHC--CCCEEEECCCCCHHC----------CCHHHHHHHHHH
T ss_conf 99999998459559988752012156788677879999988--990999589940108----------988999999999
Q ss_pred HHCCCHHHHHHHHHHHHHH
Q ss_conf 7289989999999999999
Q gi|254780215|r 234 EKDVSYEDLMEETTKNALK 252 (262)
Q Consensus 234 i~~~~~eei~~~~~~N~~~ 252 (262)
..+++.+++.+.. +|+.+
T Consensus 272 ~~~l~~~~l~~l~-~nai~ 289 (305)
T cd00443 272 TFGLTFEDLCELN-RNSVL 289 (305)
T ss_pred HHCCCHHHHHHHH-HHHHH
T ss_conf 8096999999999-99999
No 173
>PRK05211 consensus
Probab=72.11 E-value=8.5 Score=19.35 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=19.1
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999869989999167987789999999855723
Q gi|254780215|r 22 IMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSS 56 (262)
Q Consensus 22 i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~ 56 (262)
+++..+.|+++++..+.-..+-....++++.|+..
T Consensus 80 i~~ll~~GadkViigs~a~~np~li~~~~~~fG~q 114 (248)
T PRK05211 80 AREILSFGADKISINSPALADPTLITRLADRFGVQ 114 (248)
T ss_pred HHHHHHCCCCEEEECCHHHHCCHHHHHHHHHCCCC
T ss_conf 99999879988998976761961899999857993
No 174
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=71.43 E-value=8.8 Score=19.25 Aligned_cols=111 Identities=14% Similarity=0.199 Sum_probs=62.5
Q ss_pred HHHHCC-HHHHHHHHHHCCCCEE--EEECCCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 565226-8999999998699899--99167987789999999855723321--124454433446788998853100133
Q gi|254780215|r 12 PDFDED-RHDVIMRAHQANVLKM--IAIAIKVKDFVPLIKLCQDYPSSIFC--SVGTHPCHAHEENEVLVDELVCLASHP 86 (262)
Q Consensus 12 ~~~~~d-~~~~i~~a~~~gv~~~--i~~~~~~~~~~~~~~l~~~~p~~i~~--a~GiHP~~~~~~~~~~~~~l~~l~~~~ 86 (262)
+.+.+| .+..++++.+.|++-+ .-.=.|+...+.+.+.++++...+-. |+-+-|-+.-+.+.+..+++.++-.
T Consensus 93 rhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~-- 170 (472)
T COG5016 93 RHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGV-- 170 (472)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECHHCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCC--
T ss_conf 678458999999999864875797211104646799999999961863689987426886528999999999997279--
Q ss_pred CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH
Q ss_conf 3210044677553322111024678999987664204420330002
Q gi|254780215|r 87 RVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS 132 (262)
Q Consensus 87 ~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~ 132 (262)
.-++| .+.+-.-.-....+--=.+-++++.||.+||-.
T Consensus 171 DSIci--------KDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~ 208 (472)
T COG5016 171 DSICI--------KDMAGLLTPYEAYELVKAIKKELPVPVELHTHA 208 (472)
T ss_pred CEEEE--------ECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 87884--------000026986889999999997459706985045
No 175
>PRK02925 glucuronate isomerase; Reviewed
Probab=71.36 E-value=4.9 Score=20.94 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999842
Q gi|254780215|r 241 DLMEETTKNALKLFS 255 (262)
Q Consensus 241 ei~~~~~~N~~~~f~ 255 (262)
-+.++++.|++++|+
T Consensus 451 ~v~di~y~na~~yF~ 465 (466)
T PRK02925 451 MVKDICYNNAKRYFK 465 (466)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999874998828
No 176
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=71.28 E-value=8.9 Score=19.23 Aligned_cols=82 Identities=11% Similarity=0.146 Sum_probs=42.2
Q ss_pred CCCCCEEE-CHHHH----------HHHHHHHHHHHHCCCCCCCCEECC----CCHHHHHHHHCCCCEEECC------CCC
Q ss_conf 04420330-00233----------357999853100036753311214----6402344321035202023------322
Q gi|254780215|r 122 TGIPLVIH-SRSAD----------DDMAAILQEEMKKGPFPFVIHCFS----SSQKLADICLELGGYISFT------GMI 180 (262)
Q Consensus 122 ~~~pv~iH-~r~a~----------~~~l~iL~~~~~~~~~~~i~H~Fs----G~~~~~~~~l~~g~y~S~~------g~i 180 (262)
.+..+.+| ||+-+ ..+++.|-+. +..++..=|. |+.+.++.+-. +-.+++| +.+
T Consensus 207 ~~~~v~~HvC~Gn~~~~~~~~~~y~~i~~~l~~~----~vd~~~lE~~~~r~~~~~~l~~~~~-~k~v~lGvid~~~~~v 281 (332)
T cd03311 207 DDTQIHTHICYGNFRSTWAAEGGYEPIAEYIFEL----DVDVFFLEYDNSRAGGLEPLKELPY-DKKVGLGVVDVKSPEV 281 (332)
T ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC----CCCEEEEEECCCCCCCHHHHHHCCC-CCEEEEEEEECCCCCC
T ss_conf 8868999876788777654556278999999718----9988999836887410189984899-9879866882799998
Q ss_pred CHH--HHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 113--3322333321056671798307866
Q gi|254780215|r 181 TFP--KYDALRAIARGIPMDRVLVETDSPY 208 (262)
Q Consensus 181 ~~~--~~~~~~e~v~~iPldriLlETDsP~ 208 (262)
-.. =.+.++++++.+|+|||.+-||+=+
T Consensus 282 E~~eev~~rI~~a~~~v~~e~l~~~pdCGf 311 (332)
T cd03311 282 ESPEEVKDRIEEAAKYVPLEQLWVSPDCGF 311 (332)
T ss_pred CCHHHHHHHHHHHHHHCCHHHEEECCCCCC
T ss_conf 999999999999997389988898688898
No 177
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=71.04 E-value=9 Score=19.20 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=34.5
Q ss_pred HHHHHHHHHCCCCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99985310003675331121464-023443210352-020233221133322333321056
Q gi|254780215|r 138 AAILQEEMKKGPFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIP 196 (262)
Q Consensus 138 l~iL~~~~~~~~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP 196 (262)
+++|++....-..+.|+|.=||. .++.++.+++|. .+-|.....+--...+|+.+..-|
T Consensus 193 f~~L~~i~~~~~~PlVlHGgSGip~eeI~~aI~~GV~KvNi~Td~~~A~~~avr~~~~~~~ 253 (286)
T COG0191 193 FDRLKEIQEAVSLPLVLHGGSGIPDEEIREAIKLGVAKVNIDTDLQLAFTAAVREYLAENP 253 (286)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 7999999998589879767999999999999972955885472779999999999998483
No 178
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=71.03 E-value=9 Score=19.20 Aligned_cols=59 Identities=22% Similarity=0.212 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCCCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99985310003675331121464-023443210352-020233221133322333321056
Q gi|254780215|r 138 AAILQEEMKKGPFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIP 196 (262)
Q Consensus 138 l~iL~~~~~~~~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP 196 (262)
+++|++....-+.+.++|.=||. .++++++++.|. .|-|+..+...=.+.+|+.+..-|
T Consensus 185 ~~~L~~I~~~~~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~r~~~~~~~ 245 (276)
T cd00947 185 FDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRLAFTAALREYLAENP 245 (276)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCC
T ss_conf 8999999997399879757999999999999984975998673899999999999998688
No 179
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=70.80 E-value=9.1 Score=19.16 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=35.6
Q ss_pred HHHHHHHHHCCCCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99985310003675331121464-023443210352-0202332211333223333210566
Q gi|254780215|r 138 AAILQEEMKKGPFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIPM 197 (262)
Q Consensus 138 l~iL~~~~~~~~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iPl 197 (262)
++.|++....-..+.++|.=||. .+++++++++|. .+-|+..+..-=...+|+.+..-|-
T Consensus 191 ~~~L~~I~~~~~iPLVLHGgSG~~~e~i~~ai~~Gi~KvNi~T~l~~a~~~~~r~~l~~~p~ 252 (286)
T PRK12738 191 FQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQ 252 (286)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999997307999897699999999999999769069984858999999999999986978
No 180
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=70.67 E-value=9.1 Score=19.14 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=38.1
Q ss_pred EEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 861388875--65226899999999869989999167-9877899999998557233211244
Q gi|254780215|r 4 DTHCHLLLP--DFDEDRHDVIMRAHQANVLKMIAIAI-KVKDFVPLIKLCQDYPSSIFCSVGT 63 (262)
Q Consensus 4 D~H~HL~~~--~~~~d~~~~i~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~p~~i~~a~Gi 63 (262)
|-|+|-... +-....++++++|.+.|+..+..+-. +...+.+..+.+++++ +.+-+|+
T Consensus 1 dLh~HT~~S~~dg~~~~~~lv~~a~~~g~~~vaiTDh~~~~g~~~~~~~~~~~g--i~~I~G~ 61 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAG--IKPIIGL 61 (67)
T ss_pred CCCCCCCCCHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCC--CEEEEEE
T ss_conf 948876585656368999999999987998899967886446999999999869--9799999
No 181
>PRK02134 hypothetical protein; Provisional
Probab=70.64 E-value=9.2 Score=19.14 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=42.3
Q ss_pred CCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 87565226899999999869989999167987789999999855723321124454433
Q gi|254780215|r 10 LLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHA 68 (262)
Q Consensus 10 ~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~ 68 (262)
|+--+......-|.++.+.|+..-..+-++-..+..+.++++++|+ .++|+|=...
T Consensus 10 DDfG~s~~vn~gI~~a~~~GivtstslM~n~p~~~~A~~l~~~~p~---l~vGlHl~Lt 65 (253)
T PRK02134 10 DDFGLSKGQNYGIIEAHRNGVVTSTTAMVNMPAIDHAVQLSREYPS---LGVGMHFVLT 65 (253)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCC---CCEEEEEEEC
T ss_conf 7678987788999999987983786642589049999999976899---9767877606
No 182
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=70.55 E-value=9.2 Score=19.13 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=29.1
Q ss_pred HCCHHHHHHHHHHCCCCEEEEECCCHH---HHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 226899999999869989999167987---7899999998557233211244544334
Q gi|254780215|r 15 DEDRHDVIMRAHQANVLKMIAIAIKVK---DFVPLIKLCQDYPSSIFCSVGTHPCHAH 69 (262)
Q Consensus 15 ~~d~~~~i~~a~~~gv~~~i~~~~~~~---~~~~~~~l~~~~p~~i~~a~GiHP~~~~ 69 (262)
.-+.++++..+++..+ +++.++++. +..-+..+.+.+|+......|.||....
T Consensus 56 ~~~~~~~~~~~~~~d~--v~i~t~Tps~~~~~~~a~~~K~~~P~~~ivlgG~H~T~~p 111 (472)
T TIGR03471 56 GVTIDDTLAIAKDYDL--VVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLP 111 (472)
T ss_pred CCCHHHHHHHHCCCCE--EEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 8998999998506998--9999258656889999999997688988999787643689
No 183
>TIGR01975 isoAsp_dipep beta-aspartyl peptidase; InterPro: IPR010229 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of proteins include metallopeptidases belonging to the MEROPS peptidase family M38 (clan MJ, beta-aspartyl dipeptidase family). This entry includes the beta-aspartyl dipeptidase from Escherichia coli, (3.4.19.5 from EC, IadA), which degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This entry also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that may have an equivalent in function. This family shows homology to dihydroorotases. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerisation, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase..
Probab=70.11 E-value=9.4 Score=19.07 Aligned_cols=242 Identities=18% Similarity=0.291 Sum_probs=134.3
Q ss_pred EEEEECCCCC----HHH-HCCHHHHHHHHHHCCCCEEEE-ECCC-----HHH-HHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 1686138887----565-226899999999869989999-1679-----877-899999998557233211244544334
Q gi|254780215|r 2 LIDTHCHLLL----PDF-DEDRHDVIMRAHQANVLKMIA-IAIK-----VKD-FVPLIKLCQDYPSSIFCSVGTHPCHAH 69 (262)
Q Consensus 2 ~iD~H~HL~~----~~~-~~d~~~~i~~a~~~gv~~~i~-~~~~-----~~~-~~~~~~l~~~~p~~i~~a~GiHP~~~~ 69 (262)
|||.|.|+-= --| -.-.|-.|.++-+.||+.+|= .||| +++ ..++.+|+++ .=.+|.-.|=+ .++
T Consensus 58 fID~HVHiiGGGGEgG~~TRTPE~~Ls~~t~~GvTtvVG~lGTDgi~R~m~~L~AKArAL~eE-Gvs~y~ltGaY--~vP 134 (391)
T TIGR01975 58 FIDQHVHIIGGGGEGGPKTRTPELTLSDITKGGVTTVVGLLGTDGITRDMESLLAKARALEEE-GVSCYVLTGAY--EVP 134 (391)
T ss_pred CCCCCEEEEECCCCCCCCCCCHHHECCCEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHC-CEEEEEEECCE--ECC
T ss_conf 414745784057688688884322301201126248988862786225846789999865207-82699963331--355
Q ss_pred CCCHHHHHHH-HHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-------CCC--CEEEC---HHHHHH
Q ss_conf 4678899885-3100133321004467755332211102467899998766420-------442--03300---023335
Q gi|254780215|r 70 EENEVLVDEL-VCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRIT-------GIP--LVIHS---RSADDD 136 (262)
Q Consensus 70 ~~~~~~~~~l-~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~-------~~p--v~iH~---r~a~~~ 136 (262)
-.+- -..+ ..++-=++++++|||-+==+|...|-=.|. ..+|.|- +|| |.+|. .++-+-
T Consensus 135 ~~Tl--Tgsv~sDl~LIDkvIGvGeiAiSDHRSaqPt~~~L------~~~aAeARVGGLLgGK~Giv~~H~Gds~~~L~~ 206 (391)
T TIGR01975 135 VRTL--TGSVKSDLLLIDKVIGVGEIAISDHRSAQPTVEEL------TNLAAEARVGGLLGGKPGIVNLHVGDSKRKLEP 206 (391)
T ss_pred CCCC--CCCEEEEEEEEEEEEEEEEEEECCCCCCCCCHHHH------HHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHH
T ss_conf 2001--51124326788335542457221477887448999------999775112411168875689963698677779
Q ss_pred HHHHHHHHHHCCCCCCCC-EECCCCHHHHH---HHHCCCCEEECCCCCC--HHH------HHHHHHHH-HCCCCCCEEEE
Q ss_conf 799985310003675331-12146402344---3210352020233221--133------32233332-10566717983
Q gi|254780215|r 137 MAAILQEEMKKGPFPFVI-HCFSSSQKLAD---ICLELGGYISFTGMIT--FPK------YDALRAIA-RGIPMDRVLVE 203 (262)
Q Consensus 137 ~l~iL~~~~~~~~~~~i~-H~FsG~~~~~~---~~l~~g~y~S~~g~i~--~~~------~~~~~e~v-~~iPldriLlE 203 (262)
+.+++.+ .--+...++= | -+-+.+..+ +|.+.|--+=|+..+- +.+ ++-+..++ ..+|++|+-+=
T Consensus 207 i~~~v~~-~dvPi~q~lPTH-~nR~~~LFE~g~~fa~~GG~iDlTss~~p~~~~egev~p~eGlk~~l~~gvPle~vT~s 284 (391)
T TIGR01975 207 IEELVEE-TDVPITQFLPTH-INRNRELFEAGLEFAKKGGTIDLTSSIDPQFRKEGEVKPAEGLKKLLEAGVPLEKVTFS 284 (391)
T ss_pred HHHHHHH-CCCCCCCCCCCC-CCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf 9999850-588700255776-47675689999999973980876027888755355437678999999638975235642
Q ss_pred ECC----CCCCCC-CCCC-CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 078----667877-7688-7588244999999999872899899999999999998425
Q gi|254780215|r 204 TDS----PYIVPV-SCQG-KRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 204 TDs----P~l~p~-~~r~-~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
||| |..-.. .+++ ....=..+...++.+=..-.+|+|...+.+++|--++++.
T Consensus 285 SDgnGS~P~Fde~g~l~~~~v~~~~sLf~~v~~av~~~~~pL~~al~v~T~nvA~~L~L 343 (391)
T TIGR01975 285 SDGNGSLPLFDENGELKGLGVGSVESLFEEVREAVKEGDVPLEKALRVITSNVAKVLKL 343 (391)
T ss_pred ECCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCHHHCCEEECCCCCCCCCC
T ss_conf 35788746376787463357604166789999998514787657646440364554136
No 184
>PRK06801 hypothetical protein; Provisional
Probab=69.91 E-value=9.5 Score=19.04 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=22.7
Q ss_pred CCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHC
Q ss_conf 675331121464-023443210352-0202332211333223333210
Q gi|254780215|r 149 PFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARG 194 (262)
Q Consensus 149 ~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~ 194 (262)
..+.++|+=||. .+++++++++|. .+-|+..+..-=.+.+|+.+..
T Consensus 203 ~vPLVLHGgSGi~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~r~~l~~ 250 (286)
T PRK06801 203 GLPLVLHGGSGISDTDFRRAISLGIHKINFYTGMSQAALAAVEQKMTH 250 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 999897799999999999999779769982868999999999999986
No 185
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=69.80 E-value=9.5 Score=19.02 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=11.2
Q ss_pred HHHHHHHCCCCCCEEEEECC
Q ss_conf 23333210566717983078
Q gi|254780215|r 187 ALRAIARGIPMDRVLVETDS 206 (262)
Q Consensus 187 ~~~e~v~~iPldriLlETDs 206 (262)
++++.++.-...-|++|+..
T Consensus 240 ~l~~~ik~~~v~~If~Ep~~ 259 (308)
T PRK09545 240 EIRTQLVEHKATCVFAEPQF 259 (308)
T ss_pred HHHHHHHHHCCCEEEECCCC
T ss_conf 99999998399799965999
No 186
>PRK09389 (R)-citramalate synthase; Provisional
Probab=68.58 E-value=10 Score=18.86 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=9.3
Q ss_pred HHHHHCCCCCEEECHH
Q ss_conf 7664204420330002
Q gi|254780215|r 117 EASRITGIPLVIHSRS 132 (262)
Q Consensus 117 ~lA~e~~~pv~iH~r~ 132 (262)
.+....+.|+.+||-+
T Consensus 179 ~l~~~~~~~i~vH~HN 194 (487)
T PRK09389 179 RLSESLKIPISIHCHN 194 (487)
T ss_pred HHCCCCCCEEEEEECC
T ss_conf 3004678548997059
No 187
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=68.13 E-value=10 Score=18.80 Aligned_cols=51 Identities=24% Similarity=0.464 Sum_probs=30.2
Q ss_pred HHHHHHHHCCCCEEEEECCCH--HHHHHHHHHHHH-C---------CCCCC---CCCCCCCCCCCC
Q ss_conf 999999986998999916798--778999999985-5---------72332---112445443344
Q gi|254780215|r 20 DVIMRAHQANVLKMIAIAIKV--KDFVPLIKLCQD-Y---------PSSIF---CSVGTHPCHAHE 70 (262)
Q Consensus 20 ~~i~~a~~~gv~~~i~~~~~~--~~~~~~~~l~~~-~---------p~~i~---~a~GiHP~~~~~ 70 (262)
+.+.+|.++||..+++++... .|-.++....++ . |+.+. +-+|+.|.+...
T Consensus 95 dAilEAi~agI~liV~ITEgIP~~Dm~~v~~~~~~~~~t~liGPNcpGiI~Pg~~kiGimP~~i~~ 160 (309)
T PTZ00187 95 AAIIEAIEAEIPLVVVITEGIPQHDMLKVKSMLLSQNKTRLIGPNCPGIIKPGECKIGIMPGHIHQ 160 (309)
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEEECCCEEEEECCHHHCC
T ss_conf 899999977998799933898888899999999866995998999970270682089553478557
No 188
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=67.82 E-value=10 Score=18.76 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=22.7
Q ss_pred HHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHCC
Q ss_conf 99999999869989999167-9877899999998557
Q gi|254780215|r 19 HDVIMRAHQANVLKMIAIAI-KVKDFVPLIKLCQDYP 54 (262)
Q Consensus 19 ~~~i~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~p 54 (262)
...+.++.+.|...++.+-+ +.++-+.+.+.+ +||
T Consensus 81 ~~~i~r~LD~Ga~GvivP~V~s~eea~~~V~a~-~Yp 116 (256)
T PRK10558 81 PVIIKRLLDIGFYNFLIPFVETAEEARRAVAST-RYP 116 (256)
T ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHE-EEC
T ss_conf 899999970798755614769999999999874-548
No 189
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=67.81 E-value=10 Score=18.76 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=6.4
Q ss_pred HHHHHHCCCCCCEEEEEC
Q ss_conf 333321056671798307
Q gi|254780215|r 188 LRAIARGIPMDRVLVETD 205 (262)
Q Consensus 188 ~~e~v~~iPldriLlETD 205 (262)
+.+++.-+|-....+||.
T Consensus 109 vlevIeLl~~~tFvlETN 126 (228)
T COG5014 109 VLEVIELLVNNTFVLETN 126 (228)
T ss_pred HHHHHHHCCCCEEEEEEC
T ss_conf 999998634764999757
No 190
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=67.23 E-value=11 Score=18.68 Aligned_cols=57 Identities=19% Similarity=0.154 Sum_probs=33.5
Q ss_pred HHHHHHHHHCCCCCCCCEECCCCH-HHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHC
Q ss_conf 999853100036753311214640-23443210352-0202332211333223333210
Q gi|254780215|r 138 AAILQEEMKKGPFPFVIHCFSSSQ-KLADICLELGG-YISFTGMITFPKYDALRAIARG 194 (262)
Q Consensus 138 l~iL~~~~~~~~~~~i~H~FsG~~-~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~ 194 (262)
+++|++....-..+.++|.=||.. ++++++++.|. .|-|+..+...=.+.+++.+..
T Consensus 190 ~~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~r~~l~~ 248 (283)
T pfam01116 190 FDRLKEIQAAVDVPLVLHGGSGVPDEEIRKAIKLGVAKINIDTDLQWAFTKAVREYLAE 248 (283)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 99999999873998786589999999999999839669985759999999999999986
No 191
>pfam02811 PHP PHP domain. The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain.
Probab=67.04 E-value=11 Score=18.66 Aligned_cols=62 Identities=10% Similarity=0.077 Sum_probs=36.1
Q ss_pred EEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 6861388875--65226899999999869989999167-98778999999985572332112445
Q gi|254780215|r 3 IDTHCHLLLP--DFDEDRHDVIMRAHQANVLKMIAIAI-KVKDFVPLIKLCQDYPSSIFCSVGTH 64 (262)
Q Consensus 3 iD~H~HL~~~--~~~~d~~~~i~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~p~~i~~a~GiH 64 (262)
+|-|+|-... +-....++++++|.+.|+..+..+-. +........+.+++....+.+-+|+-
T Consensus 1 v~LH~HT~~S~~dg~~~i~~lv~~a~~~g~~alaiTDh~~~~g~~~~~~~~~~~g~~ik~I~G~E 65 (173)
T pfam02811 1 VDLHVHTDFSLLDGALSIEELVKAAKELGLEAIAITDHDNLFGAPEFYEAAKLEKAGLKPIIGAE 65 (173)
T ss_pred CCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 98705773715443679999999999869987999667750519999999985478980788879
No 192
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=66.74 E-value=11 Score=18.62 Aligned_cols=116 Identities=20% Similarity=0.307 Sum_probs=55.9
Q ss_pred EEECCCCCHHHH-CCHHHHHHHHHHCCCCEEEEECCCHH--------------HHHHHHHHHHH-CCCCCCCCCCCCCCC
Q ss_conf 861388875652-26899999999869989999167987--------------78999999985-572332112445443
Q gi|254780215|r 4 DTHCHLLLPDFD-EDRHDVIMRAHQANVLKMIAIAIKVK--------------DFVPLIKLCQD-YPSSIFCSVGTHPCH 67 (262)
Q Consensus 4 D~H~HL~~~~~~-~d~~~~i~~a~~~gv~~~i~~~~~~~--------------~~~~~~~l~~~-~p~~i~~a~GiHP~~ 67 (262)
++=.||+..... ..+...+.++...||..+++.+-|+. +.....++.+. +++.....++.||..
T Consensus 60 ~~i~Hltcr~~n~~~l~~~L~~~~~~Gi~niLaLrGD~p~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~ 139 (274)
T cd00537 60 EPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEG 139 (274)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCC
T ss_conf 82268601789999999999999985986388735888877888888887746799999999997589850056668776
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCCEE
Q ss_conf 34467889988531001333210044677553322111024678999987664204--42033
Q gi|254780215|r 68 AHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITG--IPLVI 128 (262)
Q Consensus 68 ~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~--~pv~i 128 (262)
-.+. .+....+..+.. ++ +.|=||.-++.-.+ .+.|.+.++.+++.+ .||+.
T Consensus 140 hp~~-~~~~~di~~L~~--K~----~aGA~f~iTQ~~Fd--~~~~~~f~~~~~~~Gi~vPIi~ 193 (274)
T cd00537 140 HPEA-PSLEEDIKRLKR--KV----DAGADFIITQLFFD--NDAFLRFVDRCRAAGITVPIIP 193 (274)
T ss_pred CCCC-CHHHHHHHHHHH--HH----HHHHHHHHHHHEEC--HHHHHHHHHHHHHCCCCCCEEE
T ss_conf 8774-168899999999--99----81426678644333--9999999999997499986563
No 193
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=66.72 E-value=11 Score=18.61 Aligned_cols=180 Identities=17% Similarity=0.199 Sum_probs=96.1
Q ss_pred CHHHHCCH-HHHHHHHHHCCCCE--EEEECCCHHHHHHHHHHHHHCCC-CCCC--CCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 75652268-99999999869989--99916798778999999985572-3321--1244544334467889988531001
Q gi|254780215|r 11 LPDFDEDR-HDVIMRAHQANVLK--MIAIAIKVKDFVPLIKLCQDYPS-SIFC--SVGTHPCHAHEENEVLVDELVCLAS 84 (262)
Q Consensus 11 ~~~~~~d~-~~~i~~a~~~gv~~--~i~~~~~~~~~~~~~~l~~~~p~-~i~~--a~GiHP~~~~~~~~~~~~~l~~l~~ 84 (262)
.+.|-.|. +.++++|.+.|++= |.--=.|+..-..+++-+|+|.. ++-. |+-+=|-+.-+. +++.-++|+
T Consensus 85 YRHYADDVVe~FV~~a~~NG~DVFRiFDALND~RNl~~ai~a~Kk~g~dHvQg~iSYTtSPvHTl~~---yl~la~~L~- 160 (616)
T TIGR01108 85 YRHYADDVVEAFVKKAVENGLDVFRIFDALNDPRNLQKAIEAAKKHGADHVQGAISYTTSPVHTLEK---YLELAKELL- 160 (616)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH---HHHHHHHHH-
T ss_conf 4158436899999999975980899512458877899999999973897899997124684367888---999999999-
Q ss_pred CCCCCEECCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCC-CCCEEECHHHHH-HHHHHHHHHHHC-CCCCCCCEECCC
Q ss_conf 333210044677553--322111024678999987664204-420330002333-579998531000-367533112146
Q gi|254780215|r 85 HPRVVAIGETGLDRY--HNAHTIEEQKVVFLRHIEASRITG-IPLVIHSRSADD-DMAAILQEEMKK-GPFPFVIHCFSS 159 (262)
Q Consensus 85 ~~~~~aIGEiGLD~~--~~~~~~e~Q~~vF~~ql~lA~e~~-~pv~iH~r~a~~-~~l~iL~~~~~~-~~~~~i~H~FsG 159 (262)
|+|.|-= .|-+-+=.=+..++=-=+|=++++ +||-|||---.+ .-+..++..-.. .-.=.-+=+|||
T Consensus 161 --------~~G~DSI~IKDMaGlLTP~~AYELV~alK~~~~n~pvhLH~H~TtGmA~~AllkA~EAG~d~iDTAisS~S~ 232 (616)
T TIGR01108 161 --------EMGVDSICIKDMAGLLTPKVAYELVSALKKEFGNLPVHLHSHATTGMAEMALLKAIEAGADMIDTAISSMSG 232 (616)
T ss_pred --------HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCC
T ss_conf --------818860552020046441589999999974239746886324723379999998887078800200552347
Q ss_pred CH------HHHHHHHCCCCEEECCCCCC------H----HHHHHHHHHHHCCCCCCEEE
Q ss_conf 40------23443210352020233221------1----33322333321056671798
Q gi|254780215|r 160 SQ------KLADICLELGGYISFTGMIT------F----PKYDALRAIARGIPMDRVLV 202 (262)
Q Consensus 160 ~~------~~~~~~l~~g~y~S~~g~i~------~----~~~~~~~e~v~~iPldriLl 202 (262)
.. .+..-+-+.|+=-++.-.+. | +|-.+.-|.--..|.-|||+
T Consensus 233 gtSHPptE~lv~~L~~~gyD~gld~~~L~~i~~YFr~VRkKY~~fle~~~~~~D~RiLv 291 (616)
T TIGR01108 233 GTSHPPTETLVAALRGTGYDTGLDIELLLEIADYFRKVRKKYSQFLESQLKGPDSRILV 291 (616)
T ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 88887479999997057874310279999999999999999988607677788844899
No 194
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=64.52 E-value=12 Score=18.34 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=31.1
Q ss_pred HHHHHHHHCCCCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9985310003675331121464-023443210352-020233221133322333321056
Q gi|254780215|r 139 AILQEEMKKGPFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIP 196 (262)
Q Consensus 139 ~iL~~~~~~~~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP 196 (262)
+.|++....-..+.++|+=||. .++.++++++|. .+-|+..+...=.+.+|+.+..=|
T Consensus 192 ~~L~~I~~~~~vPLVLHGgSG~~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~r~~l~~~p 251 (284)
T PRK09195 192 DRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVATELKIAFSQALKNYLTEHP 251 (284)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCC
T ss_conf 999999997499989878999899999999984976998685899999999999998687
No 195
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=64.51 E-value=12 Score=18.34 Aligned_cols=85 Identities=15% Similarity=0.161 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEE-----------CCCCHHHHHHHHCCCCEEEC
Q ss_conf 78999987664204420330002--333579998531000367533112-----------14640234432103520202
Q gi|254780215|r 110 VVFLRHIEASRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHC-----------FSSSQKLADICLELGGYISF 176 (262)
Q Consensus 110 ~vF~~ql~lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~-----------FsG~~~~~~~~l~~g~y~S~ 176 (262)
...+.-++.|+++++.+.+-.-+ ..+. .+.+.+ -+...+++|. ..-+.+.++++.+.|+-+|+
T Consensus 93 ~Ti~~~~~~A~~~g~~v~vdl~~~~~~e~-a~~~~~---lgv~~~i~H~~~D~~~~g~~~~~~~~~~ik~l~~~~~~vaV 168 (216)
T PRK13306 93 PTIKAALKVAKEFNGEIQIELYGNWTWEQ-AQQWRD---AGIQQVIYHRSRDAELAGVAWGEKDLNKVKKLSDMGFKVSV 168 (216)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCHHH-HHHHHH---CCCCEEEEECCHHHHHCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999809836999737877888-999997---69987887603224424678887789999997636982998
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 33221133322333321056671798
Q gi|254780215|r 177 TGMITFPKYDALRAIARGIPMDRVLV 202 (262)
Q Consensus 177 ~g~i~~~~~~~~~e~v~~iPldriLl 202 (262)
+|-+.-+. + +.++..+.+-+.+
T Consensus 169 aGGI~~~~---~-~~~~~~~~~ivIV 190 (216)
T PRK13306 169 TGGIVPED---L-KLFKGIPIKTFIA 190 (216)
T ss_pred CCCCCHHH---H-HHHHCCCCCEEEE
T ss_conf 59989899---9-9986279989998
No 196
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=64.28 E-value=12 Score=18.31 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=12.1
Q ss_pred HHHHHCCCCCEEECHHH
Q ss_conf 76642044203300023
Q gi|254780215|r 117 EASRITGIPLVIHSRSA 133 (262)
Q Consensus 117 ~lA~e~~~pv~iH~r~a 133 (262)
++....+.|+.+||-+-
T Consensus 182 ~l~~~~~~~i~~H~HNd 198 (378)
T PRK11858 182 ELVEAVDIPIEVHCHND 198 (378)
T ss_pred HHHHHCCCCEEEEEECC
T ss_conf 99972698559997077
No 197
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=63.27 E-value=12 Score=18.41 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=68.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC----------CCCCHHHHHHHHHHCCCCC
Q ss_conf 899999999869989999167987789999999855723321124454433----------4467889988531001333
Q gi|254780215|r 18 RHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHA----------HEENEVLVDELVCLASHPR 87 (262)
Q Consensus 18 ~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~----------~~~~~~~~~~l~~l~~~~~ 87 (262)
.-++++.|.++|...+=.=.-++++... .... ...++.++.+. .+.+.+++.+|..++..-.
T Consensus 18 Ak~LI~~A~~sGadaVKFQ~~~~~~~~~-----~~~~---~~~y~~~~~~~~~~~~~~~kk~els~~~~~~L~~~~~~~g 89 (329)
T TIGR03569 18 AKKLVDAAAEAGADAVKFQTFKAEDLVS-----KNAP---KAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKG 89 (329)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHCC-----CCCC---HHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999496999930787113278-----1103---0330126898886199999871489999999999999729
Q ss_pred CC------------EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH-HH---HHHHHHHHHHHCCCCC
Q ss_conf 21------------00446775533221110246789999876642044203300023-33---5799985310003675
Q gi|254780215|r 88 VV------------AIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA-DD---DMAAILQEEMKKGPFP 151 (262)
Q Consensus 88 ~~------------aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a-~~---~~l~iL~~~~~~~~~~ 151 (262)
+. -+-+.|.|++.-.+. +.+ ....|+-+.+.++||+|=+-.+ .+ +++++++........=
T Consensus 90 i~~~~s~fd~~s~~~l~~~~~~~~KIaS~-d~~---n~~Li~~i~~~~kpiiiStG~s~~~EI~~av~~~~~~~~~~~~i 165 (329)
T TIGR03569 90 IEFLSTPFDLESADFLEDLGVPRFKIPSG-EIT---NAPLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNI 165 (329)
T ss_pred CEEEECCCCHHHHHHHHHCCCCEEEECCC-CCC---CHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 92998969899999998649997997923-105---48999999974897899678623999999999999748865576
Q ss_pred CCCEECCCCH--------HHHHHHHC-CCCEEECCCC
Q ss_conf 3311214640--------23443210-3520202332
Q gi|254780215|r 152 FVIHCFSSSQ--------KLADICLE-LGGYISFTGM 179 (262)
Q Consensus 152 ~i~H~FsG~~--------~~~~~~l~-~g~y~S~~g~ 179 (262)
+++||.|.=+ ..++.+.+ .++-+|||.-
T Consensus 166 ~llhC~s~YP~~~~~~nL~~i~~lk~~f~~~iG~SDH 202 (329)
T TIGR03569 166 TLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDH 202 (329)
T ss_pred EEEEECCCCCCCHHHCCHHHHHHHHHHCCCCEEECCC
T ss_conf 8864378899993764789999999985998684797
No 198
>LOAD_php consensus
Probab=62.62 E-value=9.7 Score=18.98 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=35.4
Q ss_pred EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEECCCH-HHHHHHHHHHHHC--CCCCCCCCCCC
Q ss_conf 16861388875--6522689999999986998999916798-7789999999855--72332112445
Q gi|254780215|r 2 LIDTHCHLLLP--DFDEDRHDVIMRAHQANVLKMIAIAIKV-KDFVPLIKLCQDY--PSSIFCSVGTH 64 (262)
Q Consensus 2 ~iD~H~HL~~~--~~~~d~~~~i~~a~~~gv~~~i~~~~~~-~~~~~~~~l~~~~--p~~i~~a~GiH 64 (262)
++|-|||-... +-....++++++|.+.|+..+..+-.+. ....+..+.+++- ...+.+-+|+-
T Consensus 1 ~v~LH~HS~~S~~dg~~~~~elv~~A~~~G~~aiaiTDh~~~~g~~~~~~~~~~~~~~~gik~I~G~E 68 (206)
T LOAD_php 1 FIDLHVHSVYSLLDGALTLEELVEEAKKLGLEAIAITDHGNLFGALEFYKYAKEIREKKGIKPIIGVE 68 (206)
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 96642052225543117999999999987998899958997435999999998753206963788879
No 199
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=62.55 E-value=13 Score=18.11 Aligned_cols=162 Identities=14% Similarity=0.202 Sum_probs=79.0
Q ss_pred HHHHHHCCCCEEEE-ECCCH----------------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 99999869989999-16798----------------77899999998557233211244544334467889988531001
Q gi|254780215|r 22 IMRAHQANVLKMIA-IAIKV----------------KDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLAS 84 (262)
Q Consensus 22 i~~a~~~gv~~~i~-~~~~~----------------~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~ 84 (262)
|+.|.+.||+.+.. +.|++ +....+.+++|.|. ++..| =|..|.. ...+.|.++.+
T Consensus 78 ID~AidcgvdsIh~fiaTSpiH~KYKl~~K~~devle~~veAvEYAKEHG--LiVEf--SAEDATR---td~dfLIk~~k 150 (371)
T TIGR02090 78 IDKAIDCGVDSIHTFIATSPIHLKYKLKNKSRDEVLEKAVEAVEYAKEHG--LIVEF--SAEDATR---TDIDFLIKVFK 150 (371)
T ss_pred HHHHHHCCCCEEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC--CEEEE--CCCCCCC---CCHHHHHHHHH
T ss_conf 01564369877899804885787234888789999999999898775257--35531--7788765---86789999987
Q ss_pred CCCCCEECCCCCCCCC--C----CCCCHHHHHHHHHHHHHHHHCC--CCCEEECHHHHH-HHHHHHHHHHHCCCCCCCCE
Q ss_conf 3332100446775533--2----2111024678999987664204--420330002333-57999853100036753311
Q gi|254780215|r 85 HPRVVAIGETGLDRYH--N----AHTIEEQKVVFLRHIEASRITG--IPLVIHSRSADD-DMAAILQEEMKKGPFPFVIH 155 (262)
Q Consensus 85 ~~~~~aIGEiGLD~~~--~----~~~~e~Q~~vF~~ql~lA~e~~--~pv~iH~r~a~~-~~l~iL~~~~~~~~~~~i~H 155 (262)
.. + |.|=|+-. | .+|.. .+.+-+. +-.+.+ +||+|||=+=++ .+..-+.-....+ -=+|
T Consensus 151 ~A----~-eAGADRi~~~DTVGV~~P~k--m~~l~k~--~k~~~kKd~~~sVHCHNDFGlAtANsi~gv~aGA---~~vH 218 (371)
T TIGR02090 151 KA----E-EAGADRINVADTVGVLTPQK--MEELIKK--IKENVKKDLPVSVHCHNDFGLATANSIAGVLAGA---EQVH 218 (371)
T ss_pred HH----H-HCCCCEEEECCCCCCCCHHH--HHHHHHH--HHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCC---EEEE
T ss_conf 13----3-21677755078556368267--9999999--9986358870588620860188999999972283---5773
Q ss_pred EC-------CCCHHHHHHHHCC----CCEEECCCCCCHHHHHHHHHHHH-CCCCCCEEE
Q ss_conf 21-------4640234432103----52020233221133322333321-056671798
Q gi|254780215|r 156 CF-------SSSQKLADICLEL----GGYISFTGMITFPKYDALRAIAR-GIPMDRVLV 202 (262)
Q Consensus 156 ~F-------sG~~~~~~~~l~~----g~y~S~~g~i~~~~~~~~~e~v~-~iPldriLl 202 (262)
|= .||+..=+-.+.| |+-..+.-...|+-++-..++.+ .+|.++=.+
T Consensus 219 ~TvNGiGERAGNAaLEEVV~AL~~LYG~~~~IK~ekLYE~SrlVs~l~~~~VPpNKaIV 277 (371)
T TIGR02090 219 VTVNGIGERAGNAALEEVVMALKVLYGVDTKIKTEKLYETSRLVSKLSGVKVPPNKAIV 277 (371)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 55557610134588999999989871410244530020177789987178888967732
No 200
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=61.86 E-value=13 Score=18.03 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHH
Q ss_conf 78999987664204420330002333579998531
Q gi|254780215|r 110 VVFLRHIEASRITGIPLVIHSRSADDDMAAILQEE 144 (262)
Q Consensus 110 ~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~ 144 (262)
+.+...++.|.+.++|+++=+-+-..+-++.|++.
T Consensus 80 ~~~~~~~~~~~~~~~~~ViGTTG~~~~~~~~i~~~ 114 (265)
T PRK00048 80 EATLENLEFALEHGKPLVIGTTGFTEEQLAALREA 114 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 99999999999749977996089998999999974
No 201
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=61.69 E-value=14 Score=18.01 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHC-CCCCEEECHH-HHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCC-EEECCCCCCHHHHHH
Q ss_conf 899998766420-4420330002-3335799985310003675331121464023443210352-020233221133322
Q gi|254780215|r 111 VFLRHIEASRIT-GIPLVIHSRS-ADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGG-YISFTGMITFPKYDA 187 (262)
Q Consensus 111 vF~~ql~lA~e~-~~pv~iH~r~-a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~-y~S~~g~i~~~~~~~ 187 (262)
-|++.-++.+.. +.|+++|--. --.+.++.+..+.... + -.+.-+.+++++.+.+|. .+-|+..+...=...
T Consensus 204 ~~d~L~~I~~~v~~vPLVLHGgS~~p~~~v~~~~~~Gg~~--~---~~~G~~de~i~~Ai~~GI~KvNi~Tdl~~a~~~~ 278 (321)
T PRK07084 204 RFDILAEIEKRIPGFPIVLHGASSVPQELVETINQHGGKL--K---DAIGIPEEQLRKAAKSAVCKINIDSDGRLAMTAA 278 (321)
T ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCC--C---CCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHH
T ss_conf 6999999998577998685289988278877787528855--5---6789999999999986976998180789999999
Q ss_pred HHHHHHCCC
Q ss_conf 333321056
Q gi|254780215|r 188 LRAIARGIP 196 (262)
Q Consensus 188 ~~e~v~~iP 196 (262)
+|+.+..-|
T Consensus 279 ir~~l~~~p 287 (321)
T PRK07084 279 IRKVLDEKP 287 (321)
T ss_pred HHHHHHHCC
T ss_conf 999998697
No 202
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=61.14 E-value=14 Score=17.94 Aligned_cols=162 Identities=19% Similarity=0.242 Sum_probs=82.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCC-----------
Q ss_conf 999916798778999999985572332-11244544334467889988531001333210044677553-----------
Q gi|254780215|r 32 KMIAIAIKVKDFVPLIKLCQDYPSSIF-CSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRY----------- 99 (262)
Q Consensus 32 ~~i~~~~~~~~~~~~~~l~~~~p~~i~-~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~----------- 99 (262)
++..+|..=.--..+.+...+.|+.-. .++. +|.......+. .++.++|.+|..-.
T Consensus 4 ki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~-~~~~~~~g~d~-----------ge~~g~~~~gv~v~~~~~~~~~~~D 71 (266)
T COG0289 4 KVAVAGASGRMGRTLIRAVLEAPDLELVAAFD-RPGSLSLGSDA-----------GELAGLGLLGVPVTDDLLLVKADAD 71 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEEE-CCCCCCCCCCH-----------HHHCCCCCCCCEEECCHHHCCCCCC
T ss_conf 69997578727899999985289946999981-37842234311-----------2321446557332063433046898
Q ss_pred --CCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCC-EECCCCHHHHHHHHCCCCEEEC
Q ss_conf --3221110246789999876642044203300023335799985310003675331-1214640234432103520202
Q gi|254780215|r 100 --HNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVI-HCFSSSQKLADICLELGGYISF 176 (262)
Q Consensus 100 --~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~-H~FsG~~~~~~~~l~~g~y~S~ 176 (262)
-+.+.. +.....++.|.+.++|++|=+-+-.++-++.|++...+ .++++ .. ||+
T Consensus 72 V~IDFT~P----~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~N-----------------fSi 128 (266)
T COG0289 72 VLIDFTTP----EATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPN-----------------FSL 128 (266)
T ss_pred EEEECCCC----HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH--CCEEEECC-----------------CHH
T ss_conf 89989982----54699999999769986997999998999999999853--89899656-----------------407
Q ss_pred CCCCCHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHCCCH
Q ss_conf 33221133322333321056-6717983078667877768875882-449999999998728998
Q gi|254780215|r 177 TGMITFPKYDALRAIARGIP-MDRVLVETDSPYIVPVSCQGKRNEP-AYVVNTAKALAKEKDVSY 239 (262)
Q Consensus 177 ~g~i~~~~~~~~~e~v~~iP-ldriLlETDsP~l~p~~~r~~~n~P-~~i~~~~~~iA~i~~~~~ 239 (262)
+-.+.++=.+ .+.+.++ -|-=++|+- -|.|.--| ..-..+++.+|+.++.+.
T Consensus 129 Gvnll~~l~~---~aak~l~~~DiEIiE~H--------Hr~K~DAPSGTAl~lae~ia~~~~~~~ 182 (266)
T COG0289 129 GVNLLFKLAE---QAAKVLDDYDIEIIEAH--------HRHKKDAPSGTALKLAEAIAEARGQDL 182 (266)
T ss_pred HHHHHHHHHH---HHHHHCCCCCEEEHHHH--------CCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999---99986677887863232--------366788986789999999998606565
No 203
>PRK12857 putative aldolase; Reviewed
Probab=60.95 E-value=14 Score=17.92 Aligned_cols=57 Identities=19% Similarity=0.144 Sum_probs=34.6
Q ss_pred HHHHHHHHHCCCCCCCCEECCCCH-HHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHC
Q ss_conf 999853100036753311214640-23443210352-0202332211333223333210
Q gi|254780215|r 138 AAILQEEMKKGPFPFVIHCFSSSQ-KLADICLELGG-YISFTGMITFPKYDALRAIARG 194 (262)
Q Consensus 138 l~iL~~~~~~~~~~~i~H~FsG~~-~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~ 194 (262)
+++|++....-+.+.|+|.=||.. ++++++++.|. .|-|+..+...=.+.+|+.+..
T Consensus 191 ~~~L~~I~~~~~vPLVLHGgSGi~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~r~~l~~ 249 (284)
T PRK12857 191 FDRLAKIRELVNIPLVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREAFVAALRRVLEK 249 (284)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 99999998616999897689999999999999809759974879999999999999986
No 204
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=60.92 E-value=14 Score=17.92 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=81.2
Q ss_pred EEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHH------HHHHH-------HHHHHHCCCCCCCCCCCCC----C
Q ss_conf 86138887565226899999999869989999167987------78999-------9999855723321124454----4
Q gi|254780215|r 4 DTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVK------DFVPL-------IKLCQDYPSSIFCSVGTHP----C 66 (262)
Q Consensus 4 D~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~------~~~~~-------~~l~~~~p~~i~~a~GiHP----~ 66 (262)
..-.|||+- .+. +.+.+|.+.|..-++.=+.... +|+.. .+++..+.-.|=.=+|.=. -
T Consensus 77 PValHLDHg---~~~-e~i~~ai~~GFtSVMiDgS~lp~~~~~~sfeeNi~~Tkevve~Ah~~gv~VEaElG~vGg~e~g 152 (347)
T PRK09196 77 PVVMHQDHG---NSP-ATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETG 152 (347)
T ss_pred CEEEECCCC---CCH-HHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 889974788---999-9999998648983897365565556777889999999999999987398499960210475667
Q ss_pred -------C-CC-------CCC-HHHHHHHHH-HCCCCCCCEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCE
Q ss_conf -------3-34-------467-889988531-0013332100446-7755332211102467899998766420-44203
Q gi|254780215|r 67 -------H-AH-------EEN-EVLVDELVC-LASHPRVVAIGET-GLDRYHNAHTIEEQKVVFLRHIEASRIT-GIPLV 127 (262)
Q Consensus 67 -------~-~~-------~~~-~~~~~~l~~-l~~~~~~~aIGEi-GLD~~~~~~~~e~Q~~vF~~ql~lA~e~-~~pv~ 127 (262)
. +. -++ ++....+.+ ---+.-.+|||-+ |.-++ ...+ ....--|++.=++.... +.|++
T Consensus 153 ~~g~edg~~~e~~~~~~~~yTdPeeA~~Fv~~TgvD~LAvaiGt~HG~YK~-~~~P-~~~~L~~~rL~eI~~~vp~~pLV 230 (347)
T PRK09196 153 MGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKF-TRKP-TGDVLAIDRIKEIHARIPNTHLV 230 (347)
T ss_pred CCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCC-CCCC-CCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 777666755555554443168999999999974877030011013466657-7899-72203699999999845678678
Q ss_pred EECH-HHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 3000-23335799985310003675331121464023443210352-020233221133322333321056
Q gi|254780215|r 128 IHSR-SADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGG-YISFTGMITFPKYDALRAIARGIP 196 (262)
Q Consensus 128 iH~r-~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP 196 (262)
+|-- +--.+.++.+..+....+ -.+.-+.+++++.+++|. .+-++..+..--...+|+.+..=|
T Consensus 231 LHGgS~vp~~~~~~~~~~gg~~~-----~~~G~~~e~i~~ai~~Gv~KiNi~Tdl~~a~~~avr~~l~~np 296 (347)
T PRK09196 231 MHGSSSVPQELLDIINEYGGDMP-----ETYGVPVEEIQEGIKHGVRKVNIDTDLRLASTGAIRRFLAENP 296 (347)
T ss_pred EECCCCCCHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 77896886789999987367665-----4469899999999980964663374899999999999998687
No 205
>pfam01717 Meth_synt_2 Cobalamin-independent synthase, Catalytic domain. This is a family of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, EC:2.1.1.14 from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length. This domain contains the catalytic residues of the enzyme.
Probab=60.37 E-value=14 Score=17.86 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=46.1
Q ss_pred CCCCCEEE-CHHHHHHHHHHHHHHHHCCCCCCCCEECC----CCHHHHHHHHCCCCEEECCCCCCHHH---------HHH
Q ss_conf 04420330-00233357999853100036753311214----64023443210352020233221133---------322
Q gi|254780215|r 122 TGIPLVIH-SRSADDDMAAILQEEMKKGPFPFVIHCFS----SSQKLADICLELGGYISFTGMITFPK---------YDA 187 (262)
Q Consensus 122 ~~~pv~iH-~r~a~~~~l~iL~~~~~~~~~~~i~H~Fs----G~~~~~~~~l~~g~y~S~~g~i~~~~---------~~~ 187 (262)
.+..+.+| ||+-+..++..+.+. +..+++.=|. |+.+.++.+- .+-.+.+ |.|+-+. .++
T Consensus 209 ~~~~i~~H~C~gny~~i~~~l~~~----~vd~~~lE~~~~~~~~~~~l~~~~-~~k~v~l-GvVd~k~~~lE~~e~v~~r 282 (324)
T pfam01717 209 LDTQVHTHVCYSDFNDILDAIDAL----DVDVLTIEFARSDMENLEALEEWG-YGKGVGF-GVVDIHSPRVPSVEEIKAL 282 (324)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHC----CCCEEEEECCCCCCHHHHHHHHCC-CCCEEEE-EEEECCCCCCCCHHHHHHH
T ss_conf 998899996688849999999748----988898111689811458888479-9984998-8881789998999999999
Q ss_pred HHHHHHCCCCCCEEEEECCCC
Q ss_conf 333321056671798307866
Q gi|254780215|r 188 LRAIARGIPMDRVLVETDSPY 208 (262)
Q Consensus 188 ~~e~v~~iPldriLlETDsP~ 208 (262)
++++++.+|+|||.+-+|+=+
T Consensus 283 I~~aa~~v~~erL~~spdCGf 303 (324)
T pfam01717 283 IKKALDIVPADRLWVNPDCGL 303 (324)
T ss_pred HHHHHHHCCHHHEEECCCCCC
T ss_conf 999998489888998788898
No 206
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=60.08 E-value=7.1 Score=19.88 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=29.1
Q ss_pred CHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 40234432103520202332211333223333210566717983078
Q gi|254780215|r 160 SQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDS 206 (262)
Q Consensus 160 ~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDs 206 (262)
|.+.+++++++|..-=|=|++-+++.+-++++++.++.+||.+==|+
T Consensus 84 s~e~v~~ll~~Gv~RVI~GT~A~~~~~~v~~~~~~~g~~~i~V~lD~ 130 (241)
T TIGR00007 84 SLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDA 130 (241)
T ss_pred CHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 88999999973985799733221086999999998489965999863
No 207
>KOG0081 consensus
Probab=59.79 E-value=12 Score=18.36 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=37.7
Q ss_pred HHHHHHHH--HHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHH-HHHHHCCCCCEEEC
Q ss_conf 88998853--100133321004467755332211102467899998-76642044203300
Q gi|254780215|r 73 EVLVDELV--CLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHI-EASRITGIPLVIHS 130 (262)
Q Consensus 73 ~~~~~~l~--~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql-~lA~e~~~pv~iH~ 130 (262)
.+|+.+|. .++++|.++-.| +..+++.|+.|=+.|. +||.++++|-.=-+
T Consensus 110 rnWlSQL~~hAYcE~PDivlcG--------NK~DL~~~R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081 110 RNWLSQLQTHAYCENPDIVLCG--------NKADLEDQRVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred HHHHHHHHHHHCCCCCCEEEEC--------CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9899998774013799989986--------7123166655239999999997399826602
No 208
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=58.53 E-value=15 Score=17.65 Aligned_cols=104 Identities=10% Similarity=0.143 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHCCCCEEEEECC-------CHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 6899999999869989999167-------987789999999855-72332112445443344678899885310013332
Q gi|254780215|r 17 DRHDVIMRAHQANVLKMIAIAI-------KVKDFVPLIKLCQDY-PSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRV 88 (262)
Q Consensus 17 d~~~~i~~a~~~gv~~~i~~~~-------~~~~~~~~~~l~~~~-p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~ 88 (262)
.+...++...+.|+..++..|+ +.++..++.+.+.+. ++.+-..+|+=- ....+.++ +.+.+.+..+
T Consensus 23 ~l~~~v~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~v~~~~~~~~~~~~pvi~gv~~----~~t~~~i~-~a~~A~~~Ga 97 (292)
T PRK03170 23 ALRKLVDYQIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS----NSTAEAIE-LTKFAEKAGA 97 (292)
T ss_pred HHHHHHHHHHHCCCCEEEECEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC----CCHHHHHH-HHHHHHHCCC
T ss_conf 999999999977999999683241411289999999999999873897128843787----67999999-9998987599
Q ss_pred CEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf 100446775533221110246789999876642044203300
Q gi|254780215|r 89 VAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS 130 (262)
Q Consensus 89 ~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~ 130 (262)
-|| -+--.||.. ..|..+++..-++|...++|+++..
T Consensus 98 dav-~v~~P~y~~----~s~~~l~~~f~~ia~~~~~Pi~lYn 134 (292)
T PRK03170 98 DGA-LVVTPYYNK----PTQEGLYQHFKAIAEATDLPIILYN 134 (292)
T ss_pred CEE-EECCCCCCC----CCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 989-961776889----9999999999999863599769873
No 209
>TIGR01703 hybrid_clust hydroxylamine reductase; InterPro: IPR010048 Hybrid cluster proteins (HCP, or Prismane) have been identified in bacteria, archaea and eukaryotic protozoa. No specific function has yet been assigned to these proteins, but it may involve oxidoreductase enzymatic activity. These proteins contain one 4Fe-4S cluster, and one hybrid 4Fe-2O-2S cluster, the latter being similar to the Ni-Fe-S cluster found in carbon monoxide dehydrogenase enzymes (IPR010047 from INTERPRO) , . This subfamily is heterogeneous with respect to the presence or absence of a region of about 100 amino acids not far from the N terminus of the protein. Members have been described as monomeric. ; GO: 0016661 oxidoreductase activity acting on other nitrogenous compounds as donors, 0051536 iron-sulfur cluster binding, 0006118 electron transport, 0005737 cytoplasm.
Probab=57.99 E-value=16 Score=17.59 Aligned_cols=190 Identities=17% Similarity=0.177 Sum_probs=113.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHH----CCCCC-----------CCCCCCCCCCCCCCCHHHHHHHHHH-------------
Q ss_conf 8999916798778999999985----57233-----------2112445443344678899885310-------------
Q gi|254780215|r 31 LKMIAIAIKVKDFVPLIKLCQD----YPSSI-----------FCSVGTHPCHAHEENEVLVDELVCL------------- 82 (262)
Q Consensus 31 ~~~i~~~~~~~~~~~~~~l~~~----~p~~i-----------~~a~GiHP~~~~~~~~~~~~~l~~l------------- 82 (262)
..|++.|.|+.+.+..++-.+. -.=+| ||.+==.||.+-++.-.|.+|-+++
T Consensus 247 ~aILvsGHDL~DL~~LL~QT~gmGle~GinVYTHgEMLPAhgYP~lKkYpHL~Gn~Gg~W~~Q~~EF~~FpGpIlmTsNC 326 (567)
T TIGR01703 247 KAILVSGHDLKDLEELLEQTEGMGLETGINVYTHGEMLPAHGYPLLKKYPHLVGNYGGAWQNQQREFAKFPGPILMTSNC 326 (567)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 74687568889999999987415644575435465334011386135064211537885433120044789860213153
Q ss_pred -----CCCCCCCEECCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHCC-CCCEEECHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf -----013332100446775533---22111024678999987664204-420330002333579998531000367533
Q gi|254780215|r 83 -----ASHPRVVAIGETGLDRYH---NAHTIEEQKVVFLRHIEASRITG-IPLVIHSRSADDDMAAILQEEMKKGPFPFV 153 (262)
Q Consensus 83 -----~~~~~~~aIGEiGLD~~~---~~~~~e~Q~~vF~~ql~lA~e~~-~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i 153 (262)
...+|+-=.|++|+.--+ +..+..-|+ =|..-++.|++.- .|--+---. ...+-
T Consensus 327 i~~P~~Y~DRiFT~G~vG~pGv~Hi~~~~~vnGqK-DF~pvI~~Al~~pg~~~~~~~~~----------------it~GF 389 (567)
T TIGR01703 327 IIPPRSYKDRIFTTGVVGWPGVKHIENDKDVNGQK-DFSPVIEKALELPGFPKELEEGT----------------ITTGF 389 (567)
T ss_pred EECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHCCCCCCHHHHCCE----------------EEEEC
T ss_conf 00777666840643734277762488696677777-82899999853884870331775----------------68703
Q ss_pred CEECCCCHHHHHHHHCC---C---CEEECCCC-CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC-----------
Q ss_conf 11214640234432103---5---20202332-211333223333210566717983078667877768-----------
Q gi|254780215|r 154 IHCFSSSQKLADICLEL---G---GYISFTGM-ITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQ----------- 215 (262)
Q Consensus 154 ~H~FsG~~~~~~~~l~~---g---~y~S~~g~-i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r----------- 215 (262)
=|..==+..+|.+++++ | -+|=++|. ...+++.=.-|+++.+|.|-|.+=-= =..||
T Consensus 390 ~h~~~L~~ktADK~velV~~GkIr~fF~vGGCDG~~~~r~YYT~~a~~~P~D~~ILT~a-----CGKYRfNk~dlGdIeG 464 (567)
T TIGR01703 390 GHHTILALKTADKIVELVKEGKIRHFFVVGGCDGRKPERNYYTEFAKKLPKDSVILTLA-----CGKYRFNKLDLGDIEG 464 (567)
T ss_pred HHHHHHHHHHCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHH-----HHHHHHHHHHCCCCCC
T ss_conf 08889864521400105115880268987224788776540589997433003678533-----3212231121377787
Q ss_pred -------CCCCCHHHHHHHHHHHHHHHCCC-HHHH
Q ss_conf -------87588244999999999872899-8999
Q gi|254780215|r 216 -------GKRNEPAYVVNTAKALAKEKDVS-YEDL 242 (262)
Q Consensus 216 -------~~~n~P~~i~~~~~~iA~i~~~~-~eei 242 (262)
|+=|....+..+|.++|+..+++ +.++
T Consensus 465 iPRllD~GQCND~YSai~~AlkL~e~f~~~DvN~L 499 (567)
T TIGR01703 465 IPRLLDLGQCNDAYSAIVIALKLAEVFGCDDVNEL 499 (567)
T ss_pred CHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 44341445650699999999999987288983633
No 210
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=57.37 E-value=16 Score=17.53 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=12.5
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf 998699899991679877899999998557233
Q gi|254780215|r 25 AHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSI 57 (262)
Q Consensus 25 a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i 57 (262)
..+.|+.+++.-+.-..+.+...+++++||+.+
T Consensus 93 ll~~G~~rViiGt~av~~p~~v~~~~~~~g~ri 125 (241)
T COG0106 93 LLDAGVARVIIGTAAVKNPDLVKELCEEYGDRI 125 (241)
T ss_pred HHHCCCCEEEEECCEECCHHHHHHHHHHCCCCE
T ss_conf 998799889980312169999999999859828
No 211
>PRK00957 methionine synthase; Provisional
Probab=57.19 E-value=16 Score=17.51 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC---CCEEECCCCCC
Q ss_conf 102467899998766420442033000233357999853100036753311214640234432103---52020233221
Q gi|254780215|r 105 IEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL---GGYISFTGMIT 181 (262)
Q Consensus 105 ~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~---g~y~S~~g~i~ 181 (262)
.+...+++.. +....+.++.+|.=+..+.+++.|.+. ...++..=|+|+.+..+.+.+. |-.+++| +++
T Consensus 177 ~~~~~~~i~~---~~~~~~~~~~~HiCg~y~~i~~~l~~~----~vd~~~lE~a~~~~~l~~l~~~~~~~k~i~lG-vid 248 (307)
T PRK00957 177 LEVAKKAIDI---IAKGLNIPVAMHVCGDVGNIFDDLLKF----NVDILDHEFAGNKENLEVLEEKDLIGKKIGFG-CVD 248 (307)
T ss_pred HHHHHHHHHH---HHCCCCCEEEEEECCCHHHHHHHHHHC----CCCEEEEEECCCCCHHHHHHHHCCCCCEEEEE-EEE
T ss_conf 8999999999---741467459999667737778899858----99989997079944388887640589859986-785
Q ss_pred HH---------HHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 13---------332233332105667179830786
Q gi|254780215|r 182 FP---------KYDALRAIARGIPMDRVLVETDSP 207 (262)
Q Consensus 182 ~~---------~~~~~~e~v~~iPldriLlETDsP 207 (262)
-. =.++++++++.+|+|||.+-||+=
T Consensus 249 ~~s~~vE~~eeV~~rI~~a~~~v~~e~l~~~pDCG 283 (307)
T PRK00957 249 TKLKSVESVDEVKALIEKGIEILGNNNIIIDPDCG 283 (307)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCC
T ss_conf 78999999999999999999738876599858999
No 212
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=56.58 E-value=16 Score=17.44 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=66.7
Q ss_pred HHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHHCCC---------CCC---CCCCCCCCCCCCCC------------
Q ss_conf 9999999986998999916--798778999999985572---------332---11244544334467------------
Q gi|254780215|r 19 HDVIMRAHQANVLKMIAIA--IKVKDFVPLIKLCQDYPS---------SIF---CSVGTHPCHAHEEN------------ 72 (262)
Q Consensus 19 ~~~i~~a~~~gv~~~i~~~--~~~~~~~~~~~l~~~~p~---------~i~---~a~GiHP~~~~~~~------------ 72 (262)
.+.+.+|.++|+..+++++ ....|-.++++.+++..- -+. +.+|+-|-++....
T Consensus 79 adai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~iiGPncpGiI~Pg~~kiGimp~~i~~~G~IGiVSrSGTLT 158 (293)
T COG0074 79 ADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTRLIGPNCPGIITPGECKIGIMPGNIYKPGNIGIVSRSGTLT 158 (293)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEECHHHHCCCCCEEEEECCCCHH
T ss_conf 99999998579957999959998889999999998669799879999637478533510523405788569996686639
Q ss_pred HHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC--HHHHHHHHHHHHHHHHCCCC
Q ss_conf 8899885310013332100446775533221110246789999876642044203300--02333579998531000367
Q gi|254780215|r 73 EVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS--RSADDDMAAILQEEMKKGPF 150 (262)
Q Consensus 73 ~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~--r~a~~~~l~iL~~~~~~~~~ 150 (262)
.+...++.. ....+-.+|| ||=|-. ..++.-.-.+.|++ -.+...-++|-- -.++.+..+.++++...
T Consensus 159 yE~~~qlt~-~G~GqS~~IG-iGGDpi-~Gt~fid~L~~fe~----Dp~T~~ivmiGEiGG~aEe~AA~~i~~~~~~--- 228 (293)
T COG0074 159 YEAVSQLTE-AGLGQSTAIG-IGGDPI-PGTSFIDALEMFEA----DPETEAIVMIGEIGGPAEEEAAEYIKANATR--- 228 (293)
T ss_pred HHHHHHHHH-CCCCEEEEEE-ECCCCC-CCCCHHHHHHHHHC----CCCCEEEEEEECCCCCHHHHHHHHHHHHCCC---
T ss_conf 999999976-3885589998-578876-88159999998645----8674079999267993899999999963468---
Q ss_pred CCCCEECCCCHHHHHHHHCCCCEE
Q ss_conf 533112146402344321035202
Q gi|254780215|r 151 PFVIHCFSSSQKLADICLELGGYI 174 (262)
Q Consensus 151 ~~i~H~FsG~~~~~~~~l~~g~y~ 174 (262)
|-++-++.|--. .+-..+|+--
T Consensus 229 KPVVa~iaG~ta--p~gkrmGhaG 250 (293)
T COG0074 229 KPVVAYIAGRTA--PEGKRMGHAG 250 (293)
T ss_pred CCEEEEEECCCC--CCCCHHHHHH
T ss_conf 986999843679--8233012103
No 213
>KOG2902 consensus
Probab=55.50 E-value=13 Score=18.03 Aligned_cols=229 Identities=17% Similarity=0.135 Sum_probs=98.0
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEE-C-----CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCHHH
Q ss_conf 6861388875652268999999998699899991-6-----7987789999999855723321124454433-4467889
Q gi|254780215|r 3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAI-A-----IKVKDFVPLIKLCQDYPSSIFCSVGTHPCHA-HEENEVL 75 (262)
Q Consensus 3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~-~-----~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~-~~~~~~~ 75 (262)
-|-|.||-.. ..+..++-...+.|+....++ . |+....-...+...+.|..- ++ +---+. .+..++.
T Consensus 11 ~DmHvHlR~g---~ml~aVvP~~a~ggvs~AyvMPNL~PPiTt~da~i~YkK~i~kL~skt--tf-LMslYLs~~ttPe~ 84 (344)
T KOG2902 11 DDMHVHLRDG---DMLHAVVPHSASGGVSRAYVMPNLKPPITTTDAAIIYKKFIMKLPSKT--TF-LMSLYLSDKTTPEE 84 (344)
T ss_pred CCEEEEECCC---CEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC--EE-EEEEEECCCCCHHH
T ss_conf 5146886268---702442541146964689974788898312899999999998568656--16-78886168888899
Q ss_pred HHHHHHHCCCCCCCEE----------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC----------HHHHH
Q ss_conf 9885310013332100----------446775533221110246789999876642044203300----------02333
Q gi|254780215|r 76 VDELVCLASHPRVVAI----------GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS----------RSADD 135 (262)
Q Consensus 76 ~~~l~~l~~~~~~~aI----------GEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~----------r~a~~ 135 (262)
+.+..+..-+.|| .+-|.| .--..|.--++--.|-|+|+.+|- -+|+.
T Consensus 85 ---I~eAa~~~~irgVK~YPaGaTTNS~~GV~---------~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D~~Vf~aE~ 152 (344)
T KOG2902 85 ---IREAAESGVIRGVKLYPAGATTNSQDGVT---------DLFGKFYPVFEAMQEQNMPLNVHGEVPPSIDGHVFDAEK 152 (344)
T ss_pred ---HHHHHHHCCEEEEEECCCCCCCCCCCCCC---------CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEECCHH
T ss_conf ---99998747454687404766445323665---------420234189999987196477427789866774104016
Q ss_pred HHHHHHHH-HHHCCCCCCCC-EECCCCHHHHHHHHCCCCEEECCCCCCH-----------------H----HHH-HHHHH
Q ss_conf 57999853-10003675331-1214640234432103520202332211-----------------3----332-23333
Q gi|254780215|r 136 DMAAILQE-EMKKGPFPFVI-HCFSSSQKLADICLELGGYISFTGMITF-----------------P----KYD-ALRAI 191 (262)
Q Consensus 136 ~~l~iL~~-~~~~~~~~~i~-H~FsG~~~~~~~~l~~g~y~S~~g~i~~-----------------~----~~~-~~~e~ 191 (262)
..+..|.. +.+-+..++|+ ||-+ ..+-.+++--+--|+++.+|- - |.. .-+.+
T Consensus 153 ~Flptll~LhqrfP~LKivlEHcTt---~dAv~~ve~a~~~sVaaTvTahHL~Lt~~dwqg~P~nfCkPVaK~e~dr~Al 229 (344)
T KOG2902 153 IFLPTLLQLHQRFPQLKIVLEHCTT---MDAVNFVESAKEGSVAATVTAHHLLLTRNDWQGQPHNFCKPVAKREIDREAL 229 (344)
T ss_pred HHHHHHHHHHHHCCCCEEHHHHCCC---HHHHHHHHHHCCCCEEEEEEHHEEEEEHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf 6689999998757630247875261---8899999862377313574202068842543689740010000373218999
Q ss_pred HHC--CCCCCEEEEECCCCCCCCCCCCCCCCHH-----HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHH
Q ss_conf 210--5667179830786678777688758824-----49999999998728--9989999999999999842
Q gi|254780215|r 192 ARG--IPMDRVLVETDSPYIVPVSCQGKRNEPA-----YVVNTAKALAKEKD--VSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 192 v~~--iPldriLlETDsP~l~p~~~r~~~n~P~-----~i~~~~~~iA~i~~--~~~eei~~~~~~N~~~~f~ 255 (262)
++. -.--+..+-||| +|.|...+.|.+. .-+..+.++|+..+ -.++.+..-+.-|-..||+
T Consensus 230 vkAatSg~pkFFfGsDS---APHprs~K~~~~~cAGvysqpfA~sy~A~VFde~gaLd~Lk~F~s~fG~~FY~ 299 (344)
T KOG2902 230 VKAATSGSPKFFFGSDS---APHPRSRKESSCGCAGVYSQPFALSYYAKVFDEAGALDKLKAFTSFFGPDFYG 299 (344)
T ss_pred HHHHHCCCCCEEECCCC---CCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCEEC
T ss_conf 99874499716636899---99842223468874334536106899999976504277776667652863002
No 214
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=55.21 E-value=13 Score=18.15 Aligned_cols=113 Identities=17% Similarity=0.294 Sum_probs=60.2
Q ss_pred HHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH----------------HHHCCCCCCCCCCCCCCCCCCC---C
Q ss_conf 56522689999999986998999916798778999999----------------9855723321124454433446---7
Q gi|254780215|r 12 PDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKL----------------CQDYPSSIFCSVGTHPCHAHEE---N 72 (262)
Q Consensus 12 ~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l----------------~~~~p~~i~~a~GiHP~~~~~~---~ 72 (262)
.-|+++.-....+|.+.=-.-+++ |.|..+-++..| |+. |=.|-. =||. +++-. .
T Consensus 308 LGFeP~Qk~~fL~Ai~kPqGMvLV--TGPTGSGKTVSLYTaLniLN~~~~NISTAED-PVEINL-pGIN--QVnvNpK~G 381 (577)
T TIGR02538 308 LGFEPDQKALFLEAIHKPQGMVLV--TGPTGSGKTVSLYTALNILNTEEVNISTAED-PVEINL-PGIN--QVNVNPKIG 381 (577)
T ss_pred HCCCHHHHHHHHHHHHCCCCCEEE--ECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CEEEEE-CCCC--EECCCCCCC
T ss_conf 068888999999997079972886--2665984168787631125776745011447-724640-7715--120466788
Q ss_pred HHHHHHHHHHC-CCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE-EECHHHHHHHHHHHH
Q ss_conf 88998853100-13332100446775533221110246789999876642044203-300023335799985
Q gi|254780215|r 73 EVLVDELVCLA-SHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLV-IHSRSADDDMAAILQ 142 (262)
Q Consensus 73 ~~~~~~l~~l~-~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~-iH~r~a~~~~l~iL~ 142 (262)
-.-...|+.++ ++|.|+.|||| ||.++.|. ++ +-|.-=.+.++ +|+=+|-.-+.+++.
T Consensus 382 LTFAaALrSFLRQDPDIIMVGEI-----RDLETAEI---Ai----KAAqTGHLVlSTLHTNdAp~Tl~RL~N 441 (577)
T TIGR02538 382 LTFAAALRSFLRQDPDIIMVGEI-----RDLETAEI---AI----KAAQTGHLVLSTLHTNDAPETLARLVN 441 (577)
T ss_pred CCHHHHHHHHCCCCCCEEEEECC-----CCHHHHHH---HH----HHHCCCCCEECCCCCCCHHHHHHHHHH
T ss_conf 78799998640689988987066-----64215899---99----984048721010001685899999975
No 215
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=54.97 E-value=17 Score=17.27 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCC--CCCCCEECCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 889988531001--33321004467-755332211102467899998766420442033
Q gi|254780215|r 73 EVLVDELVCLAS--HPRVVAIGETG-LDRYHNAHTIEEQKVVFLRHIEASRITGIPLVI 128 (262)
Q Consensus 73 ~~~~~~l~~l~~--~~~~~aIGEiG-LD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~i 128 (262)
..-+.++...+. .|.+|-| |.| =|..|..++ +.-++-+++.++.+++.+-++++
T Consensus 57 ~~gL~Rl~~~L~~~~P~~Vii-~lGgND~LRg~~~-~~~~~NL~~ii~~~~~~g~~vlL 113 (191)
T PRK10528 57 QQGLARLPALLKQHQPRWVLV-ELGGNDGLRGFPP-QQTEQTLRQIIQDVKAANAQPLL 113 (191)
T ss_pred HHHHHHHHHHHHCCCCCEEEE-EECCCCHHCCCCH-HHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 469999898874079998999-8468434308998-99999999999999988997899
No 216
>TIGR02075 pyrH_bact uridylate kinase; InterPro: IPR015963 Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes. Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected. This entry represents the bacterial proteins..
Probab=54.80 E-value=18 Score=17.25 Aligned_cols=113 Identities=15% Similarity=0.196 Sum_probs=72.0
Q ss_pred HHCCCCEEEEE-CCC-------HHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCC
Q ss_conf 98699899991-679-------877899999998557233211244-544334467889988531001333210044677
Q gi|254780215|r 26 HQANVLKMIAI-AIK-------VKDFVPLIKLCQDYPSSIFCSVGT-HPCHAHEENEVLVDELVCLASHPRVVAIGETGL 96 (262)
Q Consensus 26 ~~~gv~~~i~~-~~~-------~~~~~~~~~l~~~~p~~i~~a~Gi-HP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGL 96 (262)
...|+...|.. +.. +..+.++.+.-++- ..|..+-|. +|++. .+...-|+.-.-+..++=+|==|-
T Consensus 89 ~~~g~~~~V~Sfai~~~~~i~E~Y~~~~a~~~le~g-~vVIF~gGtGnPfFT----TDtaA~LRAiEi~aD~~Lkgt~GV 163 (236)
T TIGR02075 89 EKLGLKTRVLSFAISMPKQICESYIRRKAIKHLEKG-KVVIFSGGTGNPFFT----TDTAAALRAIEINADVILKGTNGV 163 (236)
T ss_pred HHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHCC-CEEEEECCCCCCCCH----HHHHHHHHHHHHCCEEEEEECCCC
T ss_conf 736995689877753586413232278999985359-789995589869632----115888766643134799810488
Q ss_pred CCCCCCCCCHH----------HHHHHHHHH--------HHHHHCCCCCEEECHHHHHHHHHHHHH
Q ss_conf 55332211102----------467899998--------766420442033000233357999853
Q gi|254780215|r 97 DRYHNAHTIEE----------QKVVFLRHI--------EASRITGIPLVIHSRSADDDMAAILQE 143 (262)
Q Consensus 97 D~~~~~~~~e~----------Q~~vF~~ql--------~lA~e~~~pv~iH~r~a~~~~l~iL~~ 143 (262)
|--|+..|+.- -.+++..+| .||+|.|+|++|=.=+...-+.+++..
T Consensus 164 DGVY~~DPkknk~A~~y~~itY~~~L~~~L~VMD~TA~~La~dnnlpi~VFnI~~~g~l~~vi~g 228 (236)
T TIGR02075 164 DGVYTADPKKNKDAKKYDTITYNEVLKKNLKVMDLTAFSLAKDNNLPIVVFNIDEPGALKKVILG 228 (236)
T ss_pred CCCCCCCCCCCCCCEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCC
T ss_conf 80235878859875231667989998614711358999999877897599666653016453227
No 217
>TIGR01748 rhaA L-rhamnose isomerase; InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process.
Probab=53.64 E-value=8.3 Score=19.43 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=20.2
Q ss_pred CCCEECCCCCCCC---------CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3210044677553---------3221110246789999876642
Q gi|254780215|r 87 RVVAIGETGLDRY---------HNAHTIEEQKVVFLRHIEASRI 121 (262)
Q Consensus 87 ~~~aIGEiGLD~~---------~~~~~~e~Q~~vF~~ql~lA~e 121 (262)
....+=.|||||| |.-.++..|+..+++-|+=...
T Consensus 313 dll~~v~IGLDFFDAsINRiAAWviGTRN~~KaLL~ALLePtad 356 (415)
T TIGR01748 313 DLLDKVAIGLDFFDASINRIAAWVIGTRNMKKALLKALLEPTAD 356 (415)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH
T ss_conf 65111120441211103121221003224589999986177267
No 218
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=52.76 E-value=19 Score=17.04 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=35.2
Q ss_pred HHHHHHHHHCCCCCCCCEECCCCH-HHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHC
Q ss_conf 999853100036753311214640-23443210352-0202332211333223333210
Q gi|254780215|r 138 AAILQEEMKKGPFPFVIHCFSSSQ-KLADICLELGG-YISFTGMITFPKYDALRAIARG 194 (262)
Q Consensus 138 l~iL~~~~~~~~~~~i~H~FsG~~-~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~ 194 (262)
+++|++....-..+.++|+=||.. +++++++..|. .+-|+..+..-=.+.+++.+..
T Consensus 191 ~d~L~~I~~~~~iPLVLHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~~~~l~~ 249 (284)
T PRK12737 191 FDRLEEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVATELKIAFSDAVKKYFYE 249 (284)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 99999999863999896689999999999999779589985858999999999999987
No 219
>KOG2310 consensus
Probab=52.75 E-value=18 Score=17.18 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=33.4
Q ss_pred EEEEECCCCCHH--------HHCCHHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHHC
Q ss_conf 168613888756--------52268999999998699899991679-------87789999999855
Q gi|254780215|r 2 LIDTHCHLLLPD--------FDEDRHDVIMRAHQANVLKMIAIAIK-------VKDFVPLIKLCQDY 53 (262)
Q Consensus 2 ~iD~H~HL~~~~--------~~~d~~~~i~~a~~~gv~~~i~~~~~-------~~~~~~~~~l~~~~ 53 (262)
+|-+-|||...+ ....++++++-|.+..|..++.-|-- -....+++++-++|
T Consensus 17 LVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRry 83 (646)
T KOG2310 17 LVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRY 83 (646)
T ss_pred EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9851575455667753466317779999998876377579853741235785188999999999997
No 220
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=52.39 E-value=19 Score=17.00 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999998425
Q gi|254780215|r 239 YEDLMEETTKNALKLFSK 256 (262)
Q Consensus 239 ~eei~~~~~~N~~~~f~~ 256 (262)
-+++++.+|+++.+.||.
T Consensus 828 ~e~v~~lty~~A~~iYG~ 845 (1444)
T COG2176 828 EEKVRDLTYEKAHKIYGD 845 (1444)
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 799999999999998679
No 221
>PTZ00065 60S ribosomal protein L14; Provisional
Probab=52.25 E-value=7 Score=19.92 Aligned_cols=42 Identities=29% Similarity=0.296 Sum_probs=32.7
Q ss_pred HHHHHHCCC--CEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 344321035--2020233221133322333321056671798307866787
Q gi|254780215|r 163 LADICLELG--GYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVP 211 (262)
Q Consensus 163 ~~~~~l~~g--~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p 211 (262)
..++|++-| +|+++|+. ++++.-++.-+.-+|.|+ |+|..+.
T Consensus 3 vF~rfVEvGRVv~i~~Gp~-----~GKL~~IVDIID~nRvLV--DGP~~tg 46 (130)
T PTZ00065 3 LFKRFVEPGRLCLITYGPD-----AGKLCFIVDIVTPTRVLV--DGAFITG 46 (130)
T ss_pred CHHHCEECCEEEEEEECCC-----CCCEEEEEEEECCCEEEE--CCCCCCC
T ss_conf 0232034265999940788-----897899999861764674--0876678
No 222
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=52.16 E-value=19 Score=16.98 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=40.3
Q ss_pred HHHHHHHHHHC-CCCCEEECHH-HHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCC-EEECCCCCCHHHHHHH
Q ss_conf 99998766420-4420330002-3335799985310003675331121464023443210352-0202332211333223
Q gi|254780215|r 112 FLRHIEASRIT-GIPLVIHSRS-ADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGG-YISFTGMITFPKYDAL 188 (262)
Q Consensus 112 F~~ql~lA~e~-~~pv~iH~r~-a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~-y~S~~g~i~~~~~~~~ 188 (262)
|++.-++-.++ +.|+++|--. --.+.++.+..+.... + -.+.-+.++.++.+.+|. .+-++..+..-=...+
T Consensus 214 ~~~L~~i~~~~~~~pLVLHGgS~vp~~~~~~~~~~GG~~--~---~~~G~~~e~i~~AI~~GV~KiNi~Tdl~~A~~~~v 288 (347)
T PRK13399 214 IDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGDM--K---ETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAI 288 (347)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCC--C---CCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf 999999997378987687479788478889999707766--6---78899999999999819779985837789999999
Q ss_pred HHHHHCCC
Q ss_conf 33321056
Q gi|254780215|r 189 RAIARGIP 196 (262)
Q Consensus 189 ~e~v~~iP 196 (262)
|+.+..=|
T Consensus 289 r~~l~~~p 296 (347)
T PRK13399 289 RKVLAEHP 296 (347)
T ss_pred HHHHHHCC
T ss_conf 99998597
No 223
>PRK06740 histidinol-phosphatase; Validated
Probab=51.98 E-value=19 Score=16.96 Aligned_cols=81 Identities=20% Similarity=0.124 Sum_probs=37.2
Q ss_pred CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 91686138887565226899999999869989999167987789999999855723321124454433446788998853
Q gi|254780215|r 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELV 80 (262)
Q Consensus 1 M~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~ 80 (262)
|-||-|.||.--+++.+.-.-...+... .........+-+.+....++....+ --| .++++|++...
T Consensus 1 m~vd~h~hleegpys~~wl~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~r~--~~G-------~y~~~W~~~y~ 67 (338)
T PRK06740 1 MKVDYHIHLEEGPYSIGWLAKINEALQH----YEPLKEEKHSMEWLVKTQERLQRRV--KEG-------PFTTKWIDLYL 67 (338)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHC----CCCCCCCHHHHHHHHHHHHHHHHHH--HCC-------CCCHHHHHHHH
T ss_conf 9401688614587326699988866531----2776520212999999999999998--559-------99899999999
Q ss_pred HHCCCCCCCEECCCCCC
Q ss_conf 10013332100446775
Q gi|254780215|r 81 CLASHPRVVAIGETGLD 97 (262)
Q Consensus 81 ~l~~~~~~~aIGEiGLD 97 (262)
+.+ .=.+|-|+|+-
T Consensus 68 e~a---~~~Gi~evgi~ 81 (338)
T PRK06740 68 EEA---VRKGIKEVGIV 81 (338)
T ss_pred HHH---HHCCCCEEEEH
T ss_conf 999---97586246311
No 224
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=50.82 E-value=20 Score=16.84 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=23.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC-CCCCCCCCCCC
Q ss_conf 9999999986998999916798778999999985572-33211244544
Q gi|254780215|r 19 HDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPS-SIFCSVGTHPC 66 (262)
Q Consensus 19 ~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~-~i~~a~GiHP~ 66 (262)
++.++.|.+.|+ . +++ .++.+.++..+++++.+. .+...+-+.|.
T Consensus 93 ~~ei~~Ai~~gv-~-i~v-Ds~~El~~l~~~a~~~~~~~~~V~lRvnp~ 138 (423)
T cd06842 93 DEFLWLAVRHGA-T-IAV-DSLDELDRLLALARGYTTGPARVLLRLSPF 138 (423)
T ss_pred HHHHHHHHHCCC-E-EEE-CCHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 899999998599-8-997-899999999999876079962799986789
No 225
>PRK08082 consensus
Probab=50.60 E-value=20 Score=16.82 Aligned_cols=129 Identities=22% Similarity=0.196 Sum_probs=69.1
Q ss_pred HHHHHHHHHHH--HHHCCCCCEEECHHH--HHHHHHHHHHHHHCCCCCCCCEECCCCH--H-------HHHHHHCCCCEE
Q ss_conf 46789999876--642044203300023--3357999853100036753311214640--2-------344321035202
Q gi|254780215|r 108 QKVVFLRHIEA--SRITGIPLVIHSRSA--DDDMAAILQEEMKKGPFPFVIHCFSSSQ--K-------LADICLELGGYI 174 (262)
Q Consensus 108 Q~~vF~~ql~l--A~e~~~pv~iH~r~a--~~~~l~iL~~~~~~~~~~~i~H~FsG~~--~-------~~~~~l~~g~y~ 174 (262)
-+..|.-++.. |.+.++||.+-+-.. ..-+.+++....... ..-+ -+|.. + .+.++-+++.|+
T Consensus 215 GKTa~alnia~~~a~~~~~~V~~fSlEM~~~~l~~R~la~~s~i~-~~~i---~~g~l~~~e~~~i~~a~~~l~~~~l~i 290 (453)
T PRK08082 215 GKTAFALNIAQNVATKTDENVAIFSLEMGADQLVMRMLCAEGNID-AQRL---RTGSLTSDDWGKLTMAMGSLSNAGIYI 290 (453)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCC-HHHH---HCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 578999999999998559948997313898999999997155888-6677---518999999999999999850697389
Q ss_pred ECCCCCCHHH-HHHHHHHHHCCCCCCEEEEECCCCCCCCCCC-----CCCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 0233221133-3223333210566717983078667877768-----87588244999999999872899899999
Q gi|254780215|r 175 SFTGMITFPK-YDALRAIARGIPMDRVLVETDSPYIVPVSCQ-----GKRNEPAYVVNTAKALAKEKDVSYEDLME 244 (262)
Q Consensus 175 S~~g~i~~~~-~~~~~e~v~~iPldriLlETDsP~l~p~~~r-----~~~n~P~~i~~~~~~iA~i~~~~~eei~~ 244 (262)
-=++.++-.. ..+.|.+.+.-+++-+++ | |+--.... .+..+=+.|..-+..+|+-.++++--+++
T Consensus 291 dd~~~~~i~~i~~~~r~~~~~~~~~livI--D--YlqLi~~~~~~~~~r~~ev~~isr~LK~lAkel~ipvi~lsQ 362 (453)
T PRK08082 291 DDTPGIRVNEIRAKCRRLKQEQGLGMILI--D--YLQLIQGSGRSGENRQQEVSEISRTLKALARELEVPVIALSQ 362 (453)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEE--E--CHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 78999989999999999998669988999--5--077337789888789999999999999999996997999644
No 226
>pfam02630 SCO1-SenC SCO1/SenC. This family is involved in biogenesis of respiratory and photosynthetic systems. SCO1 is required for a post-translational step in the accumulation of subunits COXI and COXII of cytochrome c oxidase. SenC is required for optimal cytochrome c oxidase activity and maximal induction of genes encoding the light-harvesting and reaction centre complexes of R. capsulatus.
Probab=49.62 E-value=21 Score=16.72 Aligned_cols=52 Identities=13% Similarity=0.067 Sum_probs=39.7
Q ss_pred CCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC-CCEEEC
Q ss_conf 442033000233357999853100036753311214640234432103-520202
Q gi|254780215|r 123 GIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL-GGYISF 176 (262)
Q Consensus 123 ~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~-g~y~S~ 176 (262)
+.-++.++++-+.|+-++|++|..... .-++.++|+.+.++++.+. |.++.-
T Consensus 73 ~v~~v~iTvDPerDTpe~L~~Y~~~f~--~~~~~ltg~~~~i~~l~~~~~v~~~~ 125 (159)
T pfam02630 73 DVQPVFISVDPERDTPKVLKEYLKNFH--PSFIGLTGTTDEIKSVAKKFKVFYSK 125 (159)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHCC--CCCCEEECCHHHHHHHHHHHCCEEEE
T ss_conf 559999996248899999999999729--98553489999999999971860896
No 227
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=49.52 E-value=16 Score=17.61 Aligned_cols=85 Identities=15% Similarity=0.062 Sum_probs=52.9
Q ss_pred HHHCCHHHHHHHHHHCCCCEEEEECCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCC------CCCCHHHHHHHHHHCCC
Q ss_conf 65226899999999869989999167987789-999999855723321124454433------44678899885310013
Q gi|254780215|r 13 DFDEDRHDVIMRAHQANVLKMIAIAIKVKDFV-PLIKLCQDYPSSIFCSVGTHPCHA------HEENEVLVDELVCLASH 85 (262)
Q Consensus 13 ~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~-~~~~l~~~~p~~i~~a~GiHP~~~------~~~~~~~~~~l~~l~~~ 85 (262)
.....+.++=.++.+.+++.||++++....+. .... +...|+.++-..|+ |.+. ...+.+..+.+.+++..
T Consensus 27 ~~~~~l~~lG~~~~e~rp~tIiV~SaHw~t~~~~~v~-~~e~~~~i~DfygF-P~~ly~~~Y~a~G~peLa~~i~~~l~~ 104 (268)
T COG3384 27 AATRGLRELGRELPELRPDTIIVFSAHWETRGAYHVT-ASEHPETIHDFYGF-PDELYDVKYPAPGSPELAQRIVELLAK 104 (268)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECEEEECCCEEEE-CCCCCCEEECCCCC-CHHHHHCCCCCCCCHHHHHHHHHHHCC
T ss_conf 7899999997765660898799983507862743687-06676612215889-889984337999998999999997412
Q ss_pred CCCCEE-CCCCCCCC
Q ss_conf 332100-44677553
Q gi|254780215|r 86 PRVVAI-GETGLDRY 99 (262)
Q Consensus 86 ~~~~aI-GEiGLD~~ 99 (262)
..+.+- +.-|||+.
T Consensus 105 ~~v~a~~~~~gLDHG 119 (268)
T COG3384 105 LGVPADAPSWGLDHG 119 (268)
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 586666876687764
No 228
>pfam01297 SBP_bac_9 Periplasmic solute binding protein family. This family includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum.
Probab=48.98 E-value=22 Score=16.66 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=11.4
Q ss_pred HHHHHHCCCCEEEEECCCHHHHH
Q ss_conf 99999869989999167987789
Q gi|254780215|r 22 IMRAHQANVLKMIAIAIKVKDFV 44 (262)
Q Consensus 22 i~~a~~~gv~~~i~~~~~~~~~~ 44 (262)
+.+..++. .++.+|.+.+.|.
T Consensus 42 ~~~l~~AD--lii~~G~~~E~~l 62 (272)
T pfam01297 42 IKKLAKAD--LVVYNGAGLEPWL 62 (272)
T ss_pred HHHHHCCC--EEEECCCCCHHHH
T ss_conf 99995699--9999298716789
No 229
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=48.82 E-value=22 Score=16.64 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHH--------HHHHHHHHHHCCCCCCC--CCCCC
Q ss_conf 68999999998699899991679877--------89999999855723321--12445
Q gi|254780215|r 17 DRHDVIMRAHQANVLKMIAIAIKVKD--------FVPLIKLCQDYPSSIFC--SVGTH 64 (262)
Q Consensus 17 d~~~~i~~a~~~gv~~~i~~~~~~~~--------~~~~~~l~~~~p~~i~~--a~GiH 64 (262)
-..+++++|-++||+.+++++--..+ -+++.++|++|.-++.. |+||=
T Consensus 79 ~vp~v~eECG~KGVkg~vvI~AGF~E~G~eG~~LE~~l~~~a~kYg~Rl~GPNclG~~ 136 (457)
T TIGR02717 79 LVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQKLVEIARKYGMRLLGPNCLGII 136 (457)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEE
T ss_conf 7999999986179518999714864531678999999999997678817767362258
No 230
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=48.82 E-value=15 Score=17.66 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=22.2
Q ss_pred CCCCCCCCC----CCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHH
Q ss_conf 467755332----21110246789999876642044203300023335
Q gi|254780215|r 93 ETGLDRYHN----AHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDD 136 (262)
Q Consensus 93 EiGLD~~~~----~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~ 136 (262)
+-||.|.+- ...-+.+.+-|.+.| .+..+||.+|||.+.+-
T Consensus 55 ~~Gl~y~~iPv~~~~~t~~~v~~f~~~l---~~~~~Pvl~~CrSG~Rs 99 (110)
T pfam04273 55 AAGLAYRFIPVISGQITEADVEAFQRAL---AAAEGPVLAHCRSGTRA 99 (110)
T ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHH---HHCCCCEEEECCCCHHH
T ss_conf 8399799964477898999999999999---85899899988998779
No 231
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=48.27 E-value=22 Score=16.58 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=38.1
Q ss_pred HHHHHHHHHHCC-CCCCCCEECCCC-HHHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 799985310003-675331121464-023443210352-020233221133322333321056
Q gi|254780215|r 137 MAAILQEEMKKG-PFPFVIHCFSSS-QKLADICLELGG-YISFTGMITFPKYDALRAIARGIP 196 (262)
Q Consensus 137 ~l~iL~~~~~~~-~~~~i~H~FsG~-~~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP 196 (262)
-+++|++....- ..+.++|.=||. .+++++.+.+|. .+-|+..+..-=...+|+.++..|
T Consensus 189 ~~d~l~~I~~~v~~vPLVLHGgSG~~~e~i~~ai~~Gi~KvNi~Tdl~~a~~~~~r~~l~~~~ 251 (293)
T PRK07315 189 DLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQIAFANATRKFAREYE 251 (293)
T ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 899999998517998579758999999999999981955887461989999999999997156
No 232
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=47.75 E-value=23 Score=16.53 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999987289989999999
Q gi|254780215|r 224 VVNTAKALAKEKDVSYEDLMEET 246 (262)
Q Consensus 224 i~~~~~~iA~i~~~~~eei~~~~ 246 (262)
....+..+|++.|.+..++-++.
T Consensus 249 ~k~A~~~~ak~~~~~k~~LY~~~ 271 (275)
T COG0313 249 LKKAAKLAAKITGLNKKELYQLA 271 (275)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 88999999999796989999999
No 233
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.98 E-value=23 Score=16.45 Aligned_cols=12 Identities=0% Similarity=0.155 Sum_probs=5.0
Q ss_pred EEEECCCHHHHH
Q ss_conf 999167987789
Q gi|254780215|r 33 MIAIAIKVKDFV 44 (262)
Q Consensus 33 ~i~~~~~~~~~~ 44 (262)
++-+|.++.+|+
T Consensus 28 lv~~g~dPH~ye 39 (276)
T cd01016 28 LMGPGVDPHLYK 39 (276)
T ss_pred ECCCCCCCCCCC
T ss_conf 028898964687
No 234
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=46.84 E-value=23 Score=16.44 Aligned_cols=14 Identities=14% Similarity=-0.090 Sum_probs=5.9
Q ss_pred CCHHHHHHHHCCCC
Q ss_conf 64023443210352
Q gi|254780215|r 159 SSQKLADICLELGG 172 (262)
Q Consensus 159 G~~~~~~~~l~~g~ 172 (262)
++.+.++++.++|+
T Consensus 202 ~sl~Di~~L~~~gv 215 (234)
T PRK13587 202 RHQQDIQRLASLNV 215 (234)
T ss_pred CCHHHHHHHHHCCC
T ss_conf 99999999998899
No 235
>TIGR01178 ade adenine deaminase; InterPro: IPR006679 Adenine deaminase (3.5.4.2 from EC) hydrolyses adenine to form hypoxanthine and ammonia. The enzyme is part of a large metal dependent hydrolase superfamily . The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source .; GO: 0000034 adenine deaminase activity, 0006146 adenine catabolic process.
Probab=46.50 E-value=24 Score=16.41 Aligned_cols=235 Identities=14% Similarity=0.064 Sum_probs=131.4
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCC------HHHHHHHHHHHHHCCCCCCC----CCCCCCCCCCCC
Q ss_conf 16861388875652268999999998699899991679------87789999999855723321----124454433446
Q gi|254780215|r 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIK------VKDFVPLIKLCQDYPSSIFC----SVGTHPCHAHEE 71 (262)
Q Consensus 2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~~p~~i~~----a~GiHP~~~~~~ 71 (262)
++|.|.|+...... ...........|+..++.-... .......++-++.-+..+|. |+---+..-...
T Consensus 63 ~~d~~~~~~~~~~~--p~~~~~~~~~~g~~~~~~dp~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~g 140 (575)
T TIGR01178 63 FIDGHLHIESSLLT--PSEFAKLVLPHGTTTVVADPHEIANVLGEDGILFLLEDAKKTPLNFYFGLPSCVPALPGLETSG 140 (575)
T ss_pred CCCCCEEECCCCCC--HHHHHHHHHCCCCEEEEECHHHHHHHCCHHHHHHHHHHHHHCHHEEEEECCCCCCCCCCCCCCC
T ss_conf 00110000000000--3333344322563024206045543100124677764210000000132131011322222244
Q ss_pred CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 78899885310013332100446775533221110246789999876642044203300023335799985310003675
Q gi|254780215|r 72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFP 151 (262)
Q Consensus 72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~ 151 (262)
.....+.+..+...+.+.+++|+- | ....-....-....+..+..+++.+-=||.+.....+..... .
T Consensus 141 ~~~~~~~~~~~~~~~~~~gl~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~dg~~pgl~~~~~~~~~~---~---- 208 (575)
T TIGR01178 141 AVLTAEDLEELLELDEVLGLAEVL-D----YPGVINADKELLEKLDLARKLNKLVDGHCPGLSGKLLNKYIS---A---- 208 (575)
T ss_pred CEECHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH---H----
T ss_conf 300166678776422344455654-1----012322458899988876651221123246665035666665---3----
Q ss_pred CCCEE-CCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCC---CCCCEEEEECC-CCCCCCCCCCCCCCHHHHHH
Q ss_conf 33112-146402344321035202023322113332233332105---66717983078-66787776887588244999
Q gi|254780215|r 152 FVIHC-FSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGI---PMDRVLVETDS-PYIVPVSCQGKRNEPAYVVN 226 (262)
Q Consensus 152 ~i~H~-FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~i---PldriLlETDs-P~l~p~~~r~~~n~P~~i~~ 226 (262)
++.-+ -+-+.+....-+.+|.++-+.....-++...+.-++... ....+++-||+ .... ......++..
T Consensus 209 g~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgd~~~~------~~~~~g~~~~ 282 (575)
T TIGR01178 209 GISSDHESTSLEEGLEKLRLGLKLLIREGSAAKNLLALLPLINEKSKKNSRPLLLCTDGDRHPW------DLLNEGYLDH 282 (575)
T ss_pred HCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHH------HHHHCCHHHH
T ss_conf 1011101111566677774030013203411334566655555431047872588854765523------4431113789
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999872899899999999999998425
Q gi|254780215|r 227 TAKALAKEKDVSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 227 ~~~~iA~i~~~~~eei~~~~~~N~~~~f~~ 256 (262)
+++...+..+.+.-...+...-|..+.|+-
T Consensus 283 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~ 312 (575)
T TIGR01178 283 LLRRAIEEGNVDPFLALQLATLNPAEYFGL 312 (575)
T ss_pred HHHHHHHHCCCCHHHHHHHHHCCHHHHCCC
T ss_conf 999887515865245332221131444056
No 236
>pfam04183 IucA_IucC IucA / IucC family. IucA and IucC catalyse discrete steps in biosynthesis of the siderophore aerobactin from N epsilon-acetyl-N epsilon-hydroxylysine and citrate. This family represents the N-terminal region. The C-terminal region appears to be related to iron transporter proteins.
Probab=46.06 E-value=7.6 Score=19.68 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCCCCEEECHHH
Q ss_conf 32112445443344678899885310013332100446775533221110246789999876-642044203300023
Q gi|254780215|r 57 IFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEA-SRITGIPLVIHSRSA 133 (262)
Q Consensus 57 i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~l-A~e~~~pv~iH~r~a 133 (262)
=|..+=+|||.....-. ..+..++....++-+|+.|..|+-..+-+-. +- ... ..-+++|+.|+.-++
T Consensus 86 ~y~liPvHPWQ~~~~l~---~~~~~~i~~g~li~Lg~~g~~~~pt~S~RTl----~~--~~~p~~~lKlsl~v~~Tss 154 (237)
T pfam04183 86 DYVLLPVHPWQWEHLLQ---PAFAALIANGLLIDLGEGGDAYLPTSSVRTL----YN--PDAPEPHLKLSLSVRNTNS 154 (237)
T ss_pred CEEEEECCHHHHHHHHH---HHHHHHHHCCCEEECCCCCCEEEEECCEEEE----EC--CCCCCCEEEEEEEEEEECC
T ss_conf 65999117779988767---9999998689989889999606610360676----05--8899835996107760027
No 237
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=45.89 E-value=24 Score=16.35 Aligned_cols=50 Identities=28% Similarity=0.402 Sum_probs=31.7
Q ss_pred HHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE--EECHHHH
Q ss_conf 885310013332100446775533221110246789999876642044203--3000233
Q gi|254780215|r 77 DELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLV--IHSRSAD 134 (262)
Q Consensus 77 ~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~--iH~r~a~ 134 (262)
..++.......++.|-||| ++|.--.-|.+-++.+-+-++|++ +|-|..+
T Consensus 92 ~al~rA~~~aDvIIIDEIG--------pMElks~~f~~~ve~vl~~~kpliatlHrrsr~ 143 (179)
T COG1618 92 PALRRALEEADVIIIDEIG--------PMELKSKKFREAVEEVLKSGKPLIATLHRRSRH 143 (179)
T ss_pred HHHHHHHHCCCEEEEECCC--------CHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 9999886349989994336--------330200889999999965899379999625677
No 238
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.54 E-value=24 Score=16.31 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHH
Q ss_conf 75882449999999998728998999-99999999
Q gi|254780215|r 217 KRNEPAYVVNTAKALAKEKDVSYEDL-MEETTKNA 250 (262)
Q Consensus 217 ~~n~P~~i~~~~~~iA~i~~~~~eei-~~~~~~N~ 250 (262)
.++.|.++-+++..||..++.+.-.+ .+.+-+|-
T Consensus 376 ~pd~p~~agKsl~aIAd~~grdp~da~lD~Lardg 410 (579)
T COG3653 376 SPDKPELAGKSLKAIADERGRDPLDAFLDVLARDG 410 (579)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 79970233135999998758888999999988516
No 239
>pfam02669 KdpC K+-transporting ATPase, c chain. This family consists of K+-transporting ATPase, c chain, KdpC. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilize the Kdp complex. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+-transporting subunit KdpA. The K+ transport system actively transports K+ ions via ATP hydrolysis.
Probab=44.91 E-value=20 Score=16.87 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 82449999999998728998999999999999-98425687
Q gi|254780215|r 220 EPAYVVNTAKALAKEKDVSYEDLMEETTKNAL-KLFSKISE 259 (262)
Q Consensus 220 ~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~-~~f~~~~~ 259 (262)
.|.+-..=+..+|+-+|++.+++.+.+.+|+. ++||-+.+
T Consensus 133 S~aaA~~Qv~RVA~argls~~~v~~Lv~~~t~~~~lG~~Ge 173 (188)
T pfam02669 133 SPAAAQAQFPRVAKARNISPQQLQSLITKHTEGRFLGIFGE 173 (188)
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999999999849699999999999724876565799
No 240
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=44.65 E-value=25 Score=16.22 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=16.8
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCCC
Q ss_conf 33332105667179830786678777
Q gi|254780215|r 188 LRAIARGIPMDRVLVETDSPYIVPVS 213 (262)
Q Consensus 188 ~~e~v~~iPldriLlETDsP~l~p~~ 213 (262)
+.=+.+.+.++.+-+.+.+|-..|.|
T Consensus 176 f~Yfa~~ygl~~~~~~~~~p~~~Ps~ 201 (203)
T cd01145 176 YQYLADWLGIEVVASLEPLPELPPTS 201 (203)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCC
T ss_conf 79999977997989875699989899
No 241
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.33 E-value=19 Score=17.05 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=28.6
Q ss_pred ECCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHH
Q ss_conf 044677553322----11102467899998766420442033000233357
Q gi|254780215|r 91 IGETGLDRYHNA----HTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDM 137 (262)
Q Consensus 91 IGEiGLD~~~~~----~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~ 137 (262)
.+..||+|..-. ..-+.+.+.|.+- -.+..-||.-|||...+-+
T Consensus 54 a~~aGl~y~~iPV~~~~iT~~dV~~f~~A---l~eaegPVlayCrsGtRs~ 101 (130)
T COG3453 54 AEAAGLTYTHIPVTGGGITEADVEAFQRA---LDEAEGPVLAYCRSGTRSL 101 (130)
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHH---HHHCCCCEEEEECCCCHHH
T ss_conf 99669825876347998799999999999---9970898786545770688
No 242
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=42.26 E-value=27 Score=15.98 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCC--------CCC-----CCCCCCC--CCCHHHHHHHH
Q ss_conf 26899999999869989999167987789999999855723321--------124-----4544334--46788998853
Q gi|254780215|r 16 EDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFC--------SVG-----THPCHAH--EENEVLVDELV 80 (262)
Q Consensus 16 ~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~--------a~G-----iHP~~~~--~~~~~~~~~l~ 80 (262)
+|+.++++-|..-||. |++-.|...-..+ ..+.||+.... +.| +.|..-. +.-+..++++.
T Consensus 86 ~di~eiv~yA~~rgI~--VIPEID~PGH~~a--~~~~~pel~~~~~~~~~~~~~~~~~~~L~p~~~~ty~fl~~v~~E~~ 161 (357)
T cd06563 86 EEIREIVAYAAERGIT--VIPEIDMPGHALA--ALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVA 161 (357)
T ss_pred HHHHHHHHHHHHCCCE--EEECCCCCHHHHH--HHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999976998--9762576116789--99859464088888765667886664115898789999999999999
Q ss_pred HHCCCCCCCEEC--CCCCCCCCC-------------CCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHH
Q ss_conf 100133321004--467755332-------------21110246789999876642044203300023335799985310
Q gi|254780215|r 81 CLASHPRVVAIG--ETGLDRYHN-------------AHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEM 145 (262)
Q Consensus 81 ~l~~~~~~~aIG--EiGLD~~~~-------------~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~ 145 (262)
.+... +.+=|| |+-.+-+.. ....+.|..++.+..++.++.|+-+++= +|++ ..
T Consensus 162 ~lFp~-~~~HlGGDEv~~~~W~~~p~i~~~~~~~~~~~~~~l~~~F~~~~~~~l~~~gk~~i~W-----~e~~---~~-- 230 (357)
T cd06563 162 ELFPS-PYIHIGGDEVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKKMIGW-----DEIL---EG-- 230 (357)
T ss_pred HHCCC-CEEEECCCCCCCCHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE-----ECCC---CC--
T ss_conf 75897-6587557447744110387999999980999999999999999999999759926885-----1200---26--
Q ss_pred HCCCCCCCCEECCCCHHHHHHHHCCCCEEECC
Q ss_conf 00367533112146402344321035202023
Q gi|254780215|r 146 KKGPFPFVIHCFSSSQKLADICLELGGYISFT 177 (262)
Q Consensus 146 ~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~ 177 (262)
..+...+++++.|. +.+.++++.|+.+=++
T Consensus 231 -~~~~~~ivq~W~~~-~~~~~~~~~G~~vI~s 260 (357)
T cd06563 231 -GLPPNATVMSWRGE-DGGIKAAKQGYDVIMS 260 (357)
T ss_pred -CCCCCCEEEECCCC-CHHHHHHHHCCCEEEC
T ss_conf -89997189955895-0799999819988965
No 243
>pfam07228 SpoIIE Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.
Probab=41.90 E-value=28 Score=15.95 Aligned_cols=60 Identities=20% Similarity=0.120 Sum_probs=45.7
Q ss_pred HHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 3210566717983078667877768875882449999999998728998999999999999984
Q gi|254780215|r 191 IARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254 (262)
Q Consensus 191 ~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f 254 (262)
.+.--|-|+|++=||+=. . .++...++.-.....+.+.+..+.+.+++.+.+.+...++=
T Consensus 117 ~~~l~~Gd~l~l~TDGl~--E--~~~~~~~~fg~~rl~~~l~~~~~~~~~~~~~~l~~~~~~~~ 176 (192)
T pfam07228 117 EFPLEPGDTLLLYTDGLT--E--ARNPDGELFGLERLLALLAELSGLSPEELLDALLEDLLRFG 176 (192)
T ss_pred EEECCCCCEEEEECCCCC--C--CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf 998289989999886600--1--55887661179999999987369999999999999999866
No 244
>TIGR00418 thrS threonyl-tRNA synthetase; InterPro: IPR002320 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Threonyl-tRNA synthetase (6.1.1.3 from EC) exists as a monomer and belongs to class IIa. The enzyme from Escherichia coli represses the translation of its own mRNA. The crystal structure of the complex between tRNA(Thr) and ThrRS show structural features that reveal novel strategies for providing specificity in tRNA selection. These include an amino-terminal domain containing a novel protein fold that makes minor groove contacts with the tRNA acceptor stem. The enzyme induces a large deformation of the anticodon loop, resulting in an interaction between two adjacent anticodon bases, which accounts for their prominent role in tRNA identity and translational regulation. A zinc ion found in the active site is implicated in amino acid recognition/discrimination . The zinc ion may act to ensure that only amino acids that possess a hydroxyl group attached to the beta-position are activated .; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006435 threonyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=41.79 E-value=17 Score=17.31 Aligned_cols=111 Identities=20% Similarity=0.244 Sum_probs=57.5
Q ss_pred HHCCCCCEEEC--HHHHHHHHHHHHHHHHC-C-------C------------CC-CCCEECCCCHHHHHHHHCCCCEEEC
Q ss_conf 42044203300--02333579998531000-3-------6------------75-3311214640234432103520202
Q gi|254780215|r 120 RITGIPLVIHS--RSADDDMAAILQEEMKK-G-------P------------FP-FVIHCFSSSQKLADICLELGGYISF 176 (262)
Q Consensus 120 ~e~~~pv~iH~--r~a~~~~l~iL~~~~~~-~-------~------------~~-~i~H~FsG~~~~~~~~l~~g~y~S~ 176 (262)
.+...||+||| .++.+.++-+|-|+... . | .. -..+-| -.+..+++.+.|.++.+
T Consensus 452 ~~~~~Pv~IHra~~GS~ERfi~iL~E~~~G~fde~~PMLP~WLaP~QV~viPV~i~~h~~y--A~kv~~~L~~~giRv~~ 529 (595)
T TIGR00418 452 NKEKRPVMIHRAILGSIERFIAILLEKYAGAFDERLPMLPLWLAPVQVVVIPVSIEKHLDY--AKKVAEKLKKEGIRVDV 529 (595)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEEEEEECCHHHHHHH--HHHHHHHHHHCCCEEEE
T ss_conf 8700677898044005899999999875222114689885421762389970577889999--99999999857977988
Q ss_pred CCCCCHHHH----HHHHH-HHHCCCCCCEEEEECCCCCCCCCCCCCCC--CHHHHHHHH-HHHHHHHCCCHHHHHHHHHH
Q ss_conf 332211333----22333-32105667179830786678777688758--824499999-99998728998999999999
Q gi|254780215|r 177 TGMITFPKY----DALRA-IARGIPMDRVLVETDSPYIVPVSCQGKRN--EPAYVVNTA-KALAKEKDVSYEDLMEETTK 248 (262)
Q Consensus 177 ~g~i~~~~~----~~~~e-~v~~iPldriLlETDsP~l~p~~~r~~~n--~P~~i~~~~-~~iA~i~~~~~eei~~~~~~ 248 (262)
= .++ +|+|+ .++.|| |+.-..-+.-.+ .-.+|..-- .+=.+.-.|+++|+.+.+..
T Consensus 530 D-----~r~e~lgkKIR~a~~~kiP-----------y~~V~Gd~E~e~~K~~v~vR~~~t~k~~~~~~m~~~E~~~~~~~ 593 (595)
T TIGR00418 530 D-----DRNERLGKKIREAQKQKIP-----------YMLVVGDKEMEELKEAVNVRTRKTLKGQKLEKMSLDEFLEKVRK 593 (595)
T ss_pred C-----CCCCCHHHHHHHHHCCCCC-----------EEEEECCHHHHCCCCEEEECCHHHHCCCCEEEECHHHHHHHHHH
T ss_conf 3-----8888013320220132206-----------79998730231389668522402104631014309999999973
No 245
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=41.73 E-value=28 Score=15.93 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEE--CH-----HHHHHHHHHHHHHHHC---------CCCCCCCEECCCC--------HHHH
Q ss_conf 678999987664204420330--00-----2333579998531000---------3675331121464--------0234
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIH--SR-----SADDDMAAILQEEMKK---------GPFPFVIHCFSSS--------QKLA 164 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH--~r-----~a~~~~l~iL~~~~~~---------~~~~~i~H~FsG~--------~~~~ 164 (262)
.++.....+...++++|=.|| |- +.++-+++.|+..... .-..+-||+|.|+ .+.+
T Consensus 208 r~Ii~~L~~a~e~LglPH~lHvH~nNLG~PGN~~ttl~T~~~~eg~~~~~r~q~~HltHvQFhsYgg~~~~~f~S~a~~i 287 (541)
T cd01304 208 REILKGLAEANEELGLPHSIHVHCNNLGVPGNYETTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGTSWRDFESGAERI 287 (541)
T ss_pred HHHHHHHHHHHHHCCCCCCEEHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 99999999999865999603201231799987266776444204544564455113424776632678887712259999
Q ss_pred HHHHCCCCEEECC-CCCC------------------------------------------HHHHHHHHHHHHCC------
Q ss_conf 4321035202023-3221------------------------------------------13332233332105------
Q gi|254780215|r 165 DICLELGGYISFT-GMIT------------------------------------------FPKYDALRAIARGI------ 195 (262)
Q Consensus 165 ~~~l~~g~y~S~~-g~i~------------------------------------------~~~~~~~~e~v~~i------ 195 (262)
-+++..+-.+++- |.++ |++......+=-.+
T Consensus 288 ae~vN~~~nvt~DvGqv~fg~T~tmt~D~~~~~~l~~~~~~KW~n~DiE~e~g~GvvP~~Y~~k~~V~alQWAIGLElfL 367 (541)
T cd01304 288 ADYVNANDHVTIDVGQVIFGETTTMTGDGPMQFDLHGLTGLKWVNCDIELETGSGVVPFIYSPKNPVNALQWAIGLELFL 367 (541)
T ss_pred HHHHHCCCCEEEEECCCCCCCCEEEECCCHHHHHCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99983699878752640457736885256766640237778636456032567755778864777504999986158875
Q ss_pred ---CCCCEEEEECCCCCCCCC-------------CCCCCCCHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHH
Q ss_conf ---667179830786678777-------------688758824499999999987----289989999999999999842
Q gi|254780215|r 196 ---PMDRVLVETDSPYIVPVS-------------CQGKRNEPAYVVNTAKALAKE----KDVSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 196 ---PldriLlETDsP~l~p~~-------------~r~~~n~P~~i~~~~~~iA~i----~~~~~eei~~~~~~N~~~~f~ 255 (262)
...|+.+-||.|.-.|.- +|.+. -..+..-++.-+.+ |..++.|++..|+.+--|++|
T Consensus 368 l~~DPwrv~lTTDhPNggpFt~YP~li~lLMs~~~R~~~--l~~~~~~~~~~s~L~~idREysL~EiA~mTRA~pAk~LG 445 (541)
T cd01304 368 LIDDPWKVILTTDHPNGGPFTRYPRIIAWLMSKKFRAEE--IATLHKWAQDRSALPGIDREYSLYEIAIMTRAGPAKLLG 445 (541)
T ss_pred CCCCCHHEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHH--HHHCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHCC
T ss_conf 458830146504699988552158899996398999999--986599898505655554201299999997032376609
Q ss_pred H
Q ss_conf 5
Q gi|254780215|r 256 K 256 (262)
Q Consensus 256 ~ 256 (262)
.
T Consensus 446 L 446 (541)
T cd01304 446 L 446 (541)
T ss_pred C
T ss_conf 7
No 246
>PRK13118 consensus
Probab=41.60 E-value=28 Score=15.92 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=43.8
Q ss_pred HHHHHHHHHHCCC-CCEEECH--HHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC--C--CEEECCCCCCH--
Q ss_conf 9999876642044-2033000--233357999853100036753311214640234432103--5--20202332211--
Q gi|254780215|r 112 FLRHIEASRITGI-PLVIHSR--SADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL--G--GYISFTGMITF-- 182 (262)
Q Consensus 112 F~~ql~lA~e~~~-pv~iH~r--~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~--g--~y~S~~g~i~~-- 182 (262)
++++++-|++.+. -++|... ...++..+.++++ +...+-+=+-+-+.+-+++..+. | ||+|..|+---
T Consensus 111 ~e~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~---gl~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~ 187 (269)
T PRK13118 111 YERFVAQAKEAGVDGLILVDLPPEEADELRAPAQAH---GLDFIRLTSPTTSDERLPRVLEHASGYLYYVSLAGVTGAAA 187 (269)
T ss_pred HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC---CCCHHEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 999999999859974645899978999999999975---98464036989878999999843788389985456678776
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 333223333210566717983078667877768875882449999
Q gi|254780215|r 183 PKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNT 227 (262)
Q Consensus 183 ~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~ 227 (262)
.....+.+.++.+- --||-|-. ..-..++|..+..+
T Consensus 188 ~~~~~~~~~i~~ik-----~~t~~Pv~----vGFGIs~~e~~~~v 223 (269)
T PRK13118 188 LDTEHVEEAVARLR-----RHTDLPVV----VGFGIRDAESAAAI 223 (269)
T ss_pred CCHHHHHHHHHHHH-----HHCCCCEE----EEECCCCHHHHHHH
T ss_conf 67198999999999-----62589817----87167999999999
No 247
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=41.53 E-value=28 Score=15.91 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=71.2
Q ss_pred HHCCCCEEEE-ECCCHHHHHHHHHHHHHCCCC---CCCCCC---CCC-CCCCCCC---HHHHHHHHHHCCCCCCCEECCC
Q ss_conf 9869989999-167987789999999855723---321124---454-4334467---8899885310013332100446
Q gi|254780215|r 26 HQANVLKMIA-IAIKVKDFVPLIKLCQDYPSS---IFCSVG---THP-CHAHEEN---EVLVDELVCLASHPRVVAIGET 94 (262)
Q Consensus 26 ~~~gv~~~i~-~~~~~~~~~~~~~l~~~~p~~---i~~a~G---iHP-~~~~~~~---~~~~~~l~~l~~~~~~~aIGEi 94 (262)
..-|...++. ++.+++...+.++......+. +-.+.| +|- .++.+.. ......+..-..+.++-|+-|-
T Consensus 66 d~tGnp~~~qI~g~t~EA~~kYidfv~~~~d~PfliDSt~~~aR~aa~k~a~E~GladR~IYNSIn~s~~~eEieaL~es 145 (310)
T PRK00979 66 DITGNPYILQIFGETGEAIEKYIDFVSEIDDTPFLIDSTSGDARAAAAKYATEVGLADRAIYNSINMSIEEEEIEALKES 145 (310)
T ss_pred HHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf 74589657776448989999998877404678757438867888999867665144677787506766798999999856
Q ss_pred CCC------CCCCCCCCHHHHHHHHH--------HHHHHHHCCC--CCEEEC---H-----HHHHHHHHHHHHHHHCCCC
Q ss_conf 775------53322111024678999--------9876642044--203300---0-----2333579998531000367
Q gi|254780215|r 95 GLD------RYHNAHTIEEQKVVFLR--------HIEASRITGI--PLVIHS---R-----SADDDMAAILQEEMKKGPF 150 (262)
Q Consensus 95 GLD------~~~~~~~~e~Q~~vF~~--------ql~lA~e~~~--pv~iH~---r-----~a~~~~l~iL~~~~~~~~~ 150 (262)
+++ |.....+.+.-.++++. .|++|.+.+. |++=-. . -+.+.++.+-.. ...|.
T Consensus 146 di~aaIiLaFnp~dpsv~gr~~~l~~g~~~~~~gll~~Ae~~GI~~~liD~avtplg~g~g~a~r~~~avK~~--~G~Pv 223 (310)
T PRK00979 146 DIDAAIVLAFNPMDPSVEGRLKMLEDGGGGQEKGLLPIAEECGITNPLIDVAVTPLGAGAGAAARAIFAVKAK--FGYPV 223 (310)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHH--CCCCC
T ss_conf 9976899860799997234689987068732110799999759975353111367887637999999999998--19876
Q ss_pred CCCCEECCCCHHHHHHHHCC
Q ss_conf 53311214640234432103
Q gi|254780215|r 151 PFVIHCFSSSQKLADICLEL 170 (262)
Q Consensus 151 ~~i~H~FsG~~~~~~~~l~~ 170 (262)
++-.|.-....++++++-+.
T Consensus 224 G~g~hN~~saW~wlk~~~~~ 243 (310)
T PRK00979 224 GSGIHNAPSAWDWLKKFKKK 243 (310)
T ss_pred CCCCCCCHHHHHHHHHHCCC
T ss_conf 76533575787999983425
No 248
>PRK09165 replicative DNA helicase; Provisional
Probab=41.47 E-value=28 Score=15.90 Aligned_cols=128 Identities=20% Similarity=0.210 Sum_probs=63.9
Q ss_pred HHHHHHHHHH--HHH--------------HCCCCCEEECHHH--HHHHHHHHHHHHHCCCCCCCCEECCCC--HHH----
Q ss_conf 4678999987--664--------------2044203300023--335799985310003675331121464--023----
Q gi|254780215|r 108 QKVVFLRHIE--ASR--------------ITGIPLVIHSRSA--DDDMAAILQEEMKKGPFPFVIHCFSSS--QKL---- 163 (262)
Q Consensus 108 Q~~vF~~ql~--lA~--------------e~~~pv~iH~r~a--~~~~l~iL~~~~~~~~~~~i~H~FsG~--~~~---- 163 (262)
-|..|.-.+. .|+ ..+.||.+-+-.. ..-+.+++......... +-.+|. .+.
T Consensus 217 GKTafaLniA~n~A~~~~~~~~~~~~~~~~~g~~V~~FSLEMs~~ql~~Rlls~~s~V~~~----~ir~g~l~~~e~~~i 292 (484)
T PRK09165 217 GKTALATNIAFNAAKAYLREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSS----KIRRGKISEEDFEKL 292 (484)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHH----HHHCCCCCHHHHHHH
T ss_conf 7789999999999987410222233211368984899947799999999999997268613----554489999999999
Q ss_pred ---HHHHHCCCCEEECCCCCCHHH-HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC------CCCCHHHHHHHHHHHHH
Q ss_conf ---443210352020233221133-32233332105667179830786678777688------75882449999999998
Q gi|254780215|r 164 ---ADICLELGGYISFTGMITFPK-YDALRAIARGIPMDRVLVETDSPYIVPVSCQG------KRNEPAYVVNTAKALAK 233 (262)
Q Consensus 164 ---~~~~l~~g~y~S~~g~i~~~~-~~~~~e~v~~iPldriLlETDsP~l~p~~~r~------~~n~P~~i~~~~~~iA~ 233 (262)
+.++-++..|+-=++.++-.. ..+.|.+.+.-.++=+.+ | |+--....+ +..+-+.|..-+..+|+
T Consensus 293 ~~a~~~l~~~~l~IdD~~~~ti~~Ira~~Rr~k~~~gl~livI--D--YLqLi~~~~~~~~~~R~~ev~~Isr~LK~lAk 368 (484)
T PRK09165 293 VDASQELQKLPLYIDDTPALSISALRARARRLKRQHGLDLLVI--D--YLQLIRGSSKRSQDNRVQEISEITQGLKALAK 368 (484)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEE--E--CHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999719848977999879999999999998609988999--5--17635788888612199999999999999999
Q ss_pred HHCCCHHHHH
Q ss_conf 7289989999
Q gi|254780215|r 234 EKDVSYEDLM 243 (262)
Q Consensus 234 i~~~~~eei~ 243 (262)
-.++++--++
T Consensus 369 el~ipVi~Ls 378 (484)
T PRK09165 369 ELNIPVIALS 378 (484)
T ss_pred HHCCCEEEEC
T ss_conf 9699699974
No 249
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=41.45 E-value=28 Score=15.90 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=32.8
Q ss_pred HHHHHHHHHCCCCCCCCEECCCCH-HHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 999853100036753311214640-23443210352-020233221133322333321056
Q gi|254780215|r 138 AAILQEEMKKGPFPFVIHCFSSSQ-KLADICLELGG-YISFTGMITFPKYDALRAIARGIP 196 (262)
Q Consensus 138 l~iL~~~~~~~~~~~i~H~FsG~~-~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP 196 (262)
++.|++....-..+.++|.=||.. +++++++++|. .+-|+..+...=...+|+.+..-|
T Consensus 192 ~~~L~~I~~~~~vPLVLHGgSGi~~e~i~~ai~~Gi~KvNi~T~l~~a~~~~~r~~l~~~p 252 (286)
T PRK08610 192 FKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQIASAKAVRDVLNNDK 252 (286)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 9999999852499979658999999999999985984899671889999999999998597
No 250
>pfam09124 Endonuc-dimeriz T4 recombination endonuclease VII, dimerization. Members of this family, which are predominantly found in Bacteriophage T4 recombination endonuclease VII, adopt a helical secondary structure, with three alpha helices oriented parallel to each other. They mediate dimerization of the protein, as well as binding to the DNA major groove.
Probab=41.08 E-value=18 Score=17.14 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=28.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 454433446788998853100133321004467755332211102467899998766
Q gi|254780215|r 63 THPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEAS 119 (262)
Q Consensus 63 iHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA 119 (262)
|||.++.+- ..++.++-..+-+.-.-+-|.+|.. ...+..=...|++|+.-|
T Consensus 1 iHpq~~~D~----~K~FSRl~~~eM~aem~s~Gf~Y~d-~d~K~~L~k~frKqf~k~ 52 (54)
T pfam09124 1 IHPQYVPDK----TKRFSRLTKPEMIAEMDSRGFEYND-KDTKAELIKKFRKQFRKA 52 (54)
T ss_pred CCCCCHHHH----HHHHHHCCHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHH
T ss_conf 986420489----9998870659999999982777774-007999999999999886
No 251
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=40.96 E-value=29 Score=15.85 Aligned_cols=55 Identities=24% Similarity=0.363 Sum_probs=30.5
Q ss_pred HHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHC
Q ss_conf 9999876642044203300023335799985310003675331121464023443210
Q gi|254780215|r 112 FLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLE 169 (262)
Q Consensus 112 F~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~ 169 (262)
+...++.+...+-.+.+...+...+...+|++.......++|+|| +.+.+..+++
T Consensus 145 L~~ll~~~~~~~~~i~~~~~~~~~~~~~~Lk~ik~~~~~~iIld~---~~~~~~~vl~ 199 (327)
T cd06382 145 LQELLQAFGISGITITVRQLDDDLDYRPLLKEIKNSGDNRIIIDC---SADILIELLK 199 (327)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHH
T ss_conf 999998641259758999779984078999999847873999989---8589999999
No 252
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=40.89 E-value=29 Score=15.85 Aligned_cols=105 Identities=10% Similarity=0.064 Sum_probs=56.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 8999999998699899991679-------877899999998-55723321124454433446788998853100133321
Q gi|254780215|r 18 RHDVIMRAHQANVLKMIAIAIK-------VKDFVPLIKLCQ-DYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVV 89 (262)
Q Consensus 18 ~~~~i~~a~~~gv~~~i~~~~~-------~~~~~~~~~l~~-~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~ 89 (262)
+.+.++.....||..++..|++ .++..+..+.+. ..++.+-.-.|+- .. +.+.++ +.+...+..+-
T Consensus 28 ~~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~g~~~vi~gvg-~~----t~~ai~-la~~a~~~Gad 101 (296)
T TIGR03249 28 YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG-GN----TSDAIE-IARLAEKAGAD 101 (296)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCC-HH----HHHHHH-HHHHHHHCCCC
T ss_conf 9999999997799989978305166658999999999999998389841512786-12----999999-99999875999
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH
Q ss_conf 00446775533221110246789999876642044203300023
Q gi|254780215|r 90 AIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA 133 (262)
Q Consensus 90 aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a 133 (262)
|| =+--.||... .|..+++..-++|...++|+++..|..
T Consensus 102 ~v-~v~pPyy~~~----~~~~l~~~f~~ia~a~~~pi~lYn~~~ 140 (296)
T TIGR03249 102 GY-LLLPPYLING----EQEGLYAHVEAVCESTDLGVIVYQRDN 140 (296)
T ss_pred EE-EECCCCCCCC----CHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 78-9779988999----999999999999971599778730778
No 253
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012689 This entry represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway.; GO: 0018802 24-dihydroxyhept-2-ene-17-dioate aldolase activity, 0010124 phenylacetate catabolic process.
Probab=40.88 E-value=26 Score=16.13 Aligned_cols=142 Identities=16% Similarity=0.201 Sum_probs=73.6
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC-CC---------CCCCCCCCCCCCCCHHHHH--HHHHHCCCCCCC
Q ss_conf 99999869989999167987789999999855723-32---------1124454433446788998--853100133321
Q gi|254780215|r 22 IMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSS-IF---------CSVGTHPCHAHEENEVLVD--ELVCLASHPRVV 89 (262)
Q Consensus 22 i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~-i~---------~a~GiHP~~~~~~~~~~~~--~l~~l~~~~~~~ 89 (262)
|+|-.+-|...++.+-..-.+--+..=-+-+||.. |+ .-++==|+|+++.+++..- +.+....-.++-
T Consensus 77 IK~lLDIGAQTLLvPmi~~aeqA~~~V~A~rYPP~GiRGVGSALARASrwNrIp~Ylq~AdeeiClLlQVEtr~al~NL~ 156 (249)
T TIGR02311 77 IKQLLDIGAQTLLVPMIETAEQAEAAVKATRYPPKGIRGVGSALARASRWNRIPDYLQQADEEICLLLQVETREALENLE 156 (249)
T ss_pred EEHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHCCHHHHEEHHHHHHHHHHHHHHH
T ss_conf 10132234566431030377899999985069519513400787763221761257605213202323265799886215
Q ss_pred EECCC-CCCC-CCCCCCCHHHHHHHHHHHHHHHHC---CCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHH
Q ss_conf 00446-7755-332211102467899998766420---442033000233357999853100036753311214640234
Q gi|254780215|r 90 AIGET-GLDR-YHNAHTIEEQKVVFLRHIEASRIT---GIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLA 164 (262)
Q Consensus 90 aIGEi-GLD~-~~~~~~~e~Q~~vF~~ql~lA~e~---~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~ 164 (262)
.|-++ |-|- |-...+ ||..+ +.|=-=-.++|-++.++.++.+ ++..+|+-. +.+++
T Consensus 157 ~Ia~VeGVDGVFiGPAD-------------LaasmGH~GnPsHPEV~~AI~~Ai~~i~a~---gKAaGIL~~---D~~~A 217 (249)
T TIGR02311 157 EIAAVEGVDGVFIGPAD-------------LAASMGHLGNPSHPEVQDAIDDAIERIKAA---GKAAGILTA---DEKLA 217 (249)
T ss_pred HHHCCCCCCCEEECCHH-------------HHHHCCCCCCCCCHHHHHHHHHHHHHHHHC---CCCCCCCCC---CHHHH
T ss_conf 77501786624757124-------------434015688869615899999999999854---898654543---57899
Q ss_pred HHHHCCCC-EEECCCCCCH
Q ss_conf 43210352-0202332211
Q gi|254780215|r 165 DICLELGG-YISFTGMITF 182 (262)
Q Consensus 165 ~~~l~~g~-y~S~~g~i~~ 182 (262)
++|+++|+ |+.++-.+|-
T Consensus 218 ~~Y~~~G~~FvAvGVDt~L 236 (249)
T TIGR02311 218 RQYLKLGALFVAVGVDTTL 236 (249)
T ss_pred HHHHHCCCEEEEECCHHHH
T ss_conf 9999708968985213899
No 254
>PRK13120 consensus
Probab=40.78 E-value=29 Score=15.83 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHCC--C--CEEECCC
Q ss_conf 4640234432103--5--2020233
Q gi|254780215|r 158 SSSQKLADICLEL--G--GYISFTG 178 (262)
Q Consensus 158 sG~~~~~~~~l~~--g--~y~S~~g 178 (262)
+.+.+-++++.+. | ||+|..|
T Consensus 161 tT~~eRi~~I~~~s~GFvY~VS~~G 185 (285)
T PRK13120 161 TSTEARIEAIGRVARGYVYYVSLKG 185 (285)
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9989999999950898189986565
No 255
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=40.69 E-value=29 Score=15.82 Aligned_cols=97 Identities=20% Similarity=0.298 Sum_probs=52.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHH-HHHHHHCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCC
Q ss_conf 89999999986998999916798778999-9999855723321124-454433446788998853100133321004467
Q gi|254780215|r 18 RHDVIMRAHQANVLKMIAIAIKVKDFVPL-IKLCQDYPSSIFCSVG-THPCHAHEENEVLVDELVCLASHPRVVAIGETG 95 (262)
Q Consensus 18 ~~~~i~~a~~~gv~~~i~~~~~~~~~~~~-~~l~~~~p~~i~~a~G-iHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiG 95 (262)
...+++.+...+. ++...|.+.+..+++ ..+.++||+. . .+| .||.+-.+..++..+.+.. ..+.++-|| .|
T Consensus 35 ~~~ll~~~~~~~~-~v~llG~~~~~~~~~~~~l~~~yp~l-~-i~g~~~g~f~~~~~~~i~~~I~~--~~~div~vg-lG 108 (171)
T cd06533 35 MPALLELAAQKGL-RVFLLGAKPEVLEKAAERLRARYPGL-K-IVGYHHGYFGPEEEEEIIERINA--SGADILFVG-LG 108 (171)
T ss_pred HHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCC-E-EEEEECCCCCHHHHHHHHHHHHH--CCCCEEEEE-CC
T ss_conf 9999999986497-49998089899999999999788993-7-99987899980668999999986--499999996-79
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH
Q ss_conf 75533221110246789999876642044203300023
Q gi|254780215|r 96 LDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA 133 (262)
Q Consensus 96 LD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a 133 (262)
...|+.+..+ +...++.++++ |.+|
T Consensus 109 ---------~PkQE~~~~~---~~~~l~~~~~~-~vGg 133 (171)
T cd06533 109 ---------APKQELWIAR---HKDRLPVPVAI-GVGG 133 (171)
T ss_pred ---------CCHHHHHHHH---HHHHCCCCEEE-ECCE
T ss_conf ---------8288999999---99877998698-6451
No 256
>KOG1939 consensus
Probab=40.63 E-value=29 Score=15.82 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 66787776887588244999999999872
Q gi|254780215|r 207 PYIVPVSCQGKRNEPAYVVNTAKALAKEK 235 (262)
Q Consensus 207 P~l~p~~~r~~~n~P~~i~~~~~~iA~i~ 235 (262)
|..+|.-+....|+|.++..+-++..++.
T Consensus 400 P~~FPkIFGPnEdesld~e~tr~kF~eL~ 428 (1247)
T KOG1939 400 PDFFPKIFGPNEDESLDVEITREKFEELT 428 (1247)
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 03230014888666431688999999999
No 257
>pfam07611 DUF1574 Protein of unknown function (DUF1574). A family of hypothetical proteins in Leptospira interrogans.
Probab=40.13 E-value=29 Score=15.77 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=29.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHH
Q ss_conf 32211102467899998766420442033000233357999853
Q gi|254780215|r 100 HNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQE 143 (262)
Q Consensus 100 ~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~ 143 (262)
+....-+.|..++++.|.+|++.|.|+++=-.+..+...+.+++
T Consensus 242 ~~f~~s~~q~~F~~~~L~l~k~~~Ikv~liwP~v~~py~~~~~~ 285 (345)
T pfam07611 242 SSFALSPMQYEFYQQFLKLAKENGIKVLLIWPSVYEPYEKRYKE 285 (345)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH
T ss_conf 55567856899999999999976996899983357679999876
No 258
>TIGR00247 TIGR00247 conserved hypothetical protein TIGR00247; InterPro: IPR003770 This family contains several aminodeoxychorismate lyase proteins. Aminodeoxychorismate lyase is a pyridoxal 5'-phosphate-dependent enzyme that converts 4-aminodeoxychorismate to pyruvate and p-aminobenzoate, a precursor of folic acid in bacteria . .
Probab=39.43 E-value=12 Score=18.45 Aligned_cols=14 Identities=43% Similarity=0.738 Sum_probs=9.9
Q ss_pred EEEECCCC-------CCCCCC
Q ss_conf 98307866-------787776
Q gi|254780215|r 201 LVETDSPY-------IVPVSC 214 (262)
Q Consensus 201 LlETDsP~-------l~p~~~ 214 (262)
=||||+|| ++|.|.
T Consensus 294 DLEi~sPYNTY~~~GlpPtPI 314 (373)
T TIGR00247 294 DLEIDSPYNTYINTGLPPTPI 314 (373)
T ss_pred ECCCCCCCCCEECCCCCCCCC
T ss_conf 157688866522178888612
No 259
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=39.39 E-value=30 Score=15.69 Aligned_cols=104 Identities=9% Similarity=0.101 Sum_probs=54.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 8999999998699899991679-------87789999999855-723321124454433446788998853100133321
Q gi|254780215|r 18 RHDVIMRAHQANVLKMIAIAIK-------VKDFVPLIKLCQDY-PSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVV 89 (262)
Q Consensus 18 ~~~~i~~a~~~gv~~~i~~~~~-------~~~~~~~~~l~~~~-p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~ 89 (262)
+.+.++...+.|+..+++.|++ .++..+..+.+.+. ++.+-.-+|+-.. ...+..+ +.+.+.+-.+-
T Consensus 20 ~~~~i~~l~~~Gv~gi~v~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~pvi~gv~~~----s~~~~~~-~a~~a~~~Gad 94 (281)
T cd00408 20 LRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGAN----STREAIE-LARHAEEAGAD 94 (281)
T ss_pred HHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCC----CHHHHHH-HHHHHHHCCCC
T ss_conf 999999999769998996854524313899999999999999808985099957878----8999999-99999975999
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
Q ss_conf 004467755332211102467899998766420442033000
Q gi|254780215|r 90 AIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR 131 (262)
Q Consensus 90 aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r 131 (262)
|| =+.-.||.. -.|.++++..-++|...++|++++-.
T Consensus 95 ~i-~v~pP~y~~----~~~~~i~~~~~~i~~~~~~pi~iYn~ 131 (281)
T cd00408 95 GV-LVVPPYYNK----PSQEGIVAHFKAVADASDLPVILYNI 131 (281)
T ss_pred EE-EECCCCCCC----CCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 89-987997778----99999999999998555997799727
No 260
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=39.34 E-value=30 Score=15.69 Aligned_cols=37 Identities=11% Similarity=0.124 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 75882449999999998728998999999999999984
Q gi|254780215|r 217 KRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254 (262)
Q Consensus 217 ~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f 254 (262)
..|+|..+..-++.+.++.. +..+...++.+...+.+
T Consensus 251 Gm~~~~~l~enLk~~~~~~p-~lte~e~~il~~v~~~~ 287 (391)
T COG1453 251 GMNTPEQLEENLKIASELEP-SLTEEELQILEKVEEIY 287 (391)
T ss_pred CCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHH
T ss_conf 88988898888999862487-66878999999999999
No 261
>PRK00915 2-isopropylmalate synthase; Validated
Probab=39.12 E-value=30 Score=15.67 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=10.3
Q ss_pred HHHCCCCEEEE--ECCCHHHHHHHHHHHH
Q ss_conf 99869989999--1679877899999998
Q gi|254780215|r 25 AHQANVLKMIA--IAIKVKDFVPLIKLCQ 51 (262)
Q Consensus 25 a~~~gv~~~i~--~~~~~~~~~~~~~l~~ 51 (262)
..+.||..+=. ++.++.+++.+..+++
T Consensus 35 L~~~GV~~IE~G~P~~s~~d~e~~~~i~~ 63 (511)
T PRK00915 35 LERLGVDVIEAGFPASSPGDFEAVKRIAR 63 (511)
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99769898998267789789999999986
No 262
>PRK13135 consensus
Probab=39.00 E-value=31 Score=15.65 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=27.6
Q ss_pred CEECCCCHHHHHHHHCC--C--CEEECCCCCCHH--HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 11214640234432103--5--202023322113--33223333210566717983078667877768875882449999
Q gi|254780215|r 154 IHCFSSSQKLADICLEL--G--GYISFTGMITFP--KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNT 227 (262)
Q Consensus 154 ~H~FsG~~~~~~~~l~~--g--~y~S~~g~i~~~--~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~ 227 (262)
+=+-+.+.+-+++..+. | ||+|..|.---+ -...+.+.++.+- --||-|-. ..-..++|..+..+
T Consensus 152 lvsPtt~~~Ri~~i~~~s~GFiY~Vs~~GvTG~~~~~~~~~~~~i~~ik-----~~t~~Pv~----vGFGI~~~e~v~~i 222 (267)
T PRK13135 152 LLTPTSDESRIRTVARLGRGFVYYVSVTGVTGARSGVEATVGGNVAKIR-----EKITVPVV----VGFGISTPQQAADV 222 (267)
T ss_pred EECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH-----HHCCCCEE----EEECCCCHHHHHHH
T ss_conf 8089895799999996189818998545666776444488999999998-----60689848----98167999999999
No 263
>pfam08981 consensus
Probab=38.81 E-value=31 Score=15.63 Aligned_cols=67 Identities=9% Similarity=0.048 Sum_probs=42.5
Q ss_pred HCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22689999999986998999916798778999999985572332---11244544334467889988531
Q gi|254780215|r 15 DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIF---CSVGTHPCHAHEENEVLVDELVC 81 (262)
Q Consensus 15 ~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~---~a~GiHP~~~~~~~~~~~~~l~~ 81 (262)
+.-++..++||.+.||.+++..+++-+.-...++..+.-.-++. ...|+.--...+.+++..+.|++
T Consensus 11 ~~tl~~a~~ra~e~gI~~iVvASssG~TA~k~~e~~~~~~~~lvvVth~~GF~~pg~~e~~~e~~~~L~~ 80 (181)
T pfam08981 11 EDTLELAAERAKELGIKHIVVASSSGETALKAAEALEGTNLNVVVVTHHAGFSEPGEQEMDPEVRKELEE 80 (181)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999999997699769998078779999998713589559999464577899856389999999997
No 264
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=38.68 E-value=31 Score=15.62 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=19.5
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 322333321056671798307866
Q gi|254780215|r 185 YDALRAIARGIPMDRVLVETDSPY 208 (262)
Q Consensus 185 ~~~~~e~v~~iPldriLlETDsP~ 208 (262)
.++++++++.+|+|||.+-||+=+
T Consensus 289 ~~Ri~~a~~~v~~erl~~spDCGf 312 (339)
T PRK09121 289 ADTLRKALQFVDADKLYPCTNCGM 312 (339)
T ss_pred HHHHHHHHHHCCHHHEEECCCCCC
T ss_conf 999999998389889898789899
No 265
>TIGR00300 TIGR00300 conserved hypothetical protein TIGR00300; InterPro: IPR005239 This family of conserved hypothetical proteins has no known function..
Probab=38.67 E-value=7.5 Score=19.71 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=63.3
Q ss_pred CCCCCCCCCCCCCCCCCC---------------------CCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHH----
Q ss_conf 572332112445443344---------------------6788998853100133321004467755332211102----
Q gi|254780215|r 53 YPSSIFCSVGTHPCHAHE---------------------ENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEE---- 107 (262)
Q Consensus 53 ~p~~i~~a~GiHP~~~~~---------------------~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~---- 107 (262)
.|+..|.+ -.||.++.- ........++++..-++++ ||+=|.=--....++|-
T Consensus 94 lPddFY~t-Tnh~Tfvr~~geWv~Ve~~~MD~~IVv~~~~~~A~c~~ir~~~~GD~Vv-VG~~Gvrvvppe~prEG~~rk 171 (418)
T TIGR00300 94 LPDDFYVT-TNHPTFVRYGGEWVEVEGIKMDAAIVVTPEERRARCKPIREIKKGDRVV-VGEEGVRVVPPERPREGKTRK 171 (418)
T ss_pred CCCCCEEC-CCEEEEEEECCEEEEECCEEECEEEEEECCCCEEEEEEHHHCCCCCEEE-ECCCCEEECCCCCCCCCCCCC
T ss_conf 67765330-4110379987378885582106689961599802798824223489899-877662741786688888534
Q ss_pred HHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCC-C------CCCCCEECCCCHHHHHHHHCCCC
Q ss_conf 46789999876642044203300023335799985310003-6------75331121464023443210352
Q gi|254780215|r 108 QKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKG-P------FPFVIHCFSSSQKLADICLELGG 172 (262)
Q Consensus 108 Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~-~------~~~i~H~FsG~~~~~~~~l~~g~ 172 (262)
...+|+ ++.-...--+|+..=.++=..|+.++=++|.+.+ . =++|+|- |+...+-+++..||
T Consensus 172 en~~Fe-FM~~~vSSE~p~e~~i~~IA~E~~ei~~~yrk~GkG~I~vvaGPav~HT--g~~~~la~LiR~GY 240 (418)
T TIGR00300 172 ENGVFE-FMGSEVSSERPVETLIEKIAKEIYEIREKYRKTGKGKIVVVAGPAVIHT--GAAQALAKLIREGY 240 (418)
T ss_pred CCCCCE-ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEC--CCHHHHHHHHHHHH
T ss_conf 244000-0157765443057999999999999999863158833899857804846--75899999976447
No 266
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=37.84 E-value=32 Score=15.54 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCE-----------ECCCCHHHHHHHHCCCCEEECC
Q ss_conf 8999987664204420330002--33357999853100036753311-----------2146402344321035202023
Q gi|254780215|r 111 VFLRHIEASRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIH-----------CFSSSQKLADICLELGGYISFT 177 (262)
Q Consensus 111 vF~~ql~lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H-----------~FsG~~~~~~~~l~~g~y~S~~ 177 (262)
-.+.-++.|+++++-+++-.-+ ..++.-+. . .-+..-+++| |...+....+++.++|+-+|++
T Consensus 94 TI~~~~~~a~~~g~~v~vDli~~~~~~~ak~~-~---~lgv~~v~~H~g~D~q~~g~~~~~~~l~~~k~~~~~~~~vaVA 169 (220)
T PRK13305 94 TVEKGHAVAQSCGGEIQIELFGNWTLDDARDW-H---RIGVRQAIYHRGRDAQASGQQWGEADLARMKALSDIGLELSIT 169 (220)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH-H---HCCCCEEEEEECCCHHHCCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999999998099899984589987899999-9---8699889998333676518986310199999876069649998
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 3221133322333321056671798
Q gi|254780215|r 178 GMITFPKYDALRAIARGIPMDRVLV 202 (262)
Q Consensus 178 g~i~~~~~~~~~e~v~~iPldriLl 202 (262)
|-++-+. + +.++.+|.+-+.+
T Consensus 170 GGI~~~~---i-~~~~~~~~~ivIv 190 (220)
T PRK13305 170 GGITPAD---L-PLFKDIRVKAFIA 190 (220)
T ss_pred CCCCHHH---H-HHHHCCCCCEEEE
T ss_conf 8878889---9-9997169989998
No 267
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=37.81 E-value=32 Score=15.53 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHCCCCEEEEECC-------CHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 6899999999869989999167-------98778999999985-572332112445443344678899885310013332
Q gi|254780215|r 17 DRHDVIMRAHQANVLKMIAIAI-------KVKDFVPLIKLCQD-YPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRV 88 (262)
Q Consensus 17 d~~~~i~~a~~~gv~~~i~~~~-------~~~~~~~~~~l~~~-~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~ 88 (262)
.+...++...+.||..++..|+ +.++..++++.+.+ -++.+-.-+|+=- ....+..+ +.+.+.+-.+
T Consensus 23 ~~~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~~Er~~v~~~~~~~~~~~~pvi~gv~~----~st~~~i~-~a~~A~~~Ga 97 (289)
T pfam00701 23 ALRKLIEFLINKGADGLFVGGTTGESFTLSTEEHEQLIEITVDEAKGRIPVIAGTGS----NSTREAIH-LAQLAEAAGA 97 (289)
T ss_pred HHHHHHHHHHHCCCCEEEECEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC----CCHHHHHH-HHHHHHHCCC
T ss_conf 999999999977999999783640311388999999999999981998628637888----78999999-9999997499
Q ss_pred CEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf 100446775533221110246789999876642044203300
Q gi|254780215|r 89 VAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS 130 (262)
Q Consensus 89 ~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~ 130 (262)
-|| =+.-.||... .|..+++..-++|...++|++++.
T Consensus 98 d~i-~v~pP~y~~~----~~~~i~~~~~~va~a~~lPi~iYn 134 (289)
T pfam00701 98 DGV-LAVTPYYNKP----SQEGLYQHFKAIAAATDLPVILYN 134 (289)
T ss_pred CEE-EECCCCCCCC----CHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 978-8779988899----999999999999831599779971
No 268
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=37.76 E-value=32 Score=15.53 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=48.0
Q ss_pred CCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC-------CCEEECCCCCCHH-HHHHHHHHHHCC
Q ss_conf 42033000233357999853100036753311214640234432103-------5202023322113-332233332105
Q gi|254780215|r 124 IPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL-------GGYISFTGMITFP-KYDALRAIARGI 195 (262)
Q Consensus 124 ~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~-------g~y~S~~g~i~~~-~~~~~~e~v~~i 195 (262)
--+.+|.- +.....++++.....+...++.=+...+.+.++.+++. ...=||+|..--+ --+|++++-+.+
T Consensus 86 d~It~H~E-~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~ 164 (220)
T COG0036 86 DIITFHAE-ATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMI 164 (220)
T ss_pred CEEEEEEC-CCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98999712-77689999999997598577997899977899989865789999857799866314799999999999974
Q ss_pred C-CCCEEEEECC
Q ss_conf 6-6717983078
Q gi|254780215|r 196 P-MDRVLVETDS 206 (262)
Q Consensus 196 P-ldriLlETDs 206 (262)
+ ...+++|-|+
T Consensus 165 ~~~~~~~IeVDG 176 (220)
T COG0036 165 DERLDILIEVDG 176 (220)
T ss_pred CCCCCEEEEEEC
T ss_conf 024775999968
No 269
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289 Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis . This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=37.68 E-value=32 Score=15.52 Aligned_cols=184 Identities=17% Similarity=0.172 Sum_probs=99.9
Q ss_pred ECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCCC-----CCCC-CCCC--CCCC-
Q ss_conf 13888756522689999999986998999916------798778999999985572332-----1124-4544--3344-
Q gi|254780215|r 6 HCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA------IKVKDFVPLIKLCQDYPSSIF-----CSVG-THPC--HAHE- 70 (262)
Q Consensus 6 H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~------~~~~~~~~~~~l~~~~p~~i~-----~a~G-iHP~--~~~~- 70 (262)
=-|||+= ++.+. ..+|.++|..-++.=| .+.....++.+++....+.|- .++| +==. =+.+
T Consensus 85 aLHLDHG---~s~E~-c~~AI~aGfsSVMIDgShlP~EEN~~~Tkkvve~Ah~~GDYvSVEaElG~~gG~ED~i~V~~~~ 160 (339)
T TIGR01859 85 ALHLDHG---SSYES-CIKAIKAGFSSVMIDGSHLPFEENVALTKKVVEIAHAKGDYVSVEAELGTIGGIEDGIVVVEKE 160 (339)
T ss_pred EEECCCC---CCHHH-HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECEECCEECCEEEEECC
T ss_conf 8646887---64899-9999964981672024268788888888999999985199799999843035276273787156
Q ss_pred ---CCHHHHHHHHH-HCCCCCCCEECCC-CCCCCCCCCCCH------------HHHHHHHHHHHHHHHCC-CCCEEECHH
Q ss_conf ---67889988531-0013332100446-775533221110------------24678999987664204-420330002
Q gi|254780215|r 71 ---ENEVLVDELVC-LASHPRVVAIGET-GLDRYHNAHTIE------------EQKVVFLRHIEASRITG-IPLVIHSRS 132 (262)
Q Consensus 71 ---~~~~~~~~l~~-l~~~~~~~aIGEi-GLD~~~~~~~~e------------~Q~~vF~~ql~lA~e~~-~pv~iH~r~ 132 (262)
.+.++.+++-+ .--+-=..|||=+ | +-..+.+ .+. =|++-=++.+..+ +|+|+|-=.
T Consensus 161 ~~ladp~Ea~~fV~eT~~D~LA~aIGt~HG----a~kykgeqCtrnaDGvLiWp~L-dF~~l~~I~~~~~G~PLVLHGaS 235 (339)
T TIGR01859 161 GELADPDEAEQFVKETGVDYLAAAIGTSHG----AFKYKGEQCTRNADGVLIWPGL-DFERLKEIKELTNGIPLVLHGAS 235 (339)
T ss_pred CEECCHHHHHHHHHHCCCCEECCCCCCCCC----CCCCCCCCCCCCCCCEECCCCC-CHHHHHHHHHHHCCCCEEECCCC
T ss_conf 367587999999976387754010035023----5788866533046723548888-97899999875089766735765
Q ss_pred H-HHHHHHHHHHHHHCC-CCCCCCEECCCCHHHHHHHHCCC-CEEECCC--CCCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 3-335799985310003-67533112146402344321035-2020233--2211333223333210566717983078
Q gi|254780215|r 133 A-DDDMAAILQEEMKKG-PFPFVIHCFSSSQKLADICLELG-GYISFTG--MITFPKYDALRAIARGIPMDRVLVETDS 206 (262)
Q Consensus 133 a-~~~~l~iL~~~~~~~-~~~~i~H~FsG~~~~~~~~l~~g-~y~S~~g--~i~~~~~~~~~e~v~~iPldriLlETDs 206 (262)
+ =.++.+-+.++...- ..++| +.+++++.+++| +.+=++. .+.|. ..+|++++.+--.-+-+|+-.
T Consensus 236 ~VP~e~v~~~~~~GG~L~ds~GI------P~e~ikkAi~lGiaKiNidTe~riAf~--~~~R~~l~dy~a~dl~l~k~~ 306 (339)
T TIGR01859 236 SVPAEIVKEVEEYGGELKDSKGI------PEEQIKKAIKLGIAKINIDTECRIAFT--AAIRKVLEDYEAKDLELEKKD 306 (339)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCC------CHHHHHHHHHCCCCEEEECCHHHHHHH--HHHHHHHHHCCCCCCCCCCCC
T ss_conf 68588999999818767777768------678999999729141765816789999--999999841143554025887
No 270
>PRK06233 hypothetical protein; Provisional
Probab=37.64 E-value=32 Score=15.52 Aligned_cols=86 Identities=15% Similarity=0.116 Sum_probs=43.9
Q ss_pred CCCEEE-CHHHH----------HHHHHHHHHHHHCCCCCCCCEEC---CCCHHHHHHHHCC--------CCEEECCCCCC
Q ss_conf 420330-00233----------35799985310003675331121---4640234432103--------52020233221
Q gi|254780215|r 124 IPLVIH-SRSAD----------DDMAAILQEEMKKGPFPFVIHCF---SSSQKLADICLEL--------GGYISFTGMIT 181 (262)
Q Consensus 124 ~pv~iH-~r~a~----------~~~l~iL~~~~~~~~~~~i~H~F---sG~~~~~~~~l~~--------g~y~S~~g~i~ 181 (262)
.-+.+| ||+-+ +.+.+.|.+. . ...+.+=.= .|+.+.+..+... |+.=+=++.+-
T Consensus 237 ~~i~~HiC~Gn~~~~~~~~g~Y~~Ia~~l~~~-~--vd~~~lE~d~~R~g~~e~L~~~~~~~~~k~vvlGvId~~s~~vE 313 (372)
T PRK06233 237 LTVTTHICRGNFKSTYLFSGGYEPVAKYLGQL-N--YDGFFLEYDNDRSGSFEPLKKIWNQRDNVRIVLGLITSKFPELE 313 (372)
T ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC-C--CCEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCC
T ss_conf 58999876798876654446679999999868-9--99899971675556255899864268998899977848999999
Q ss_pred HHH--HHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 133--3223333210566717983078667877
Q gi|254780215|r 182 FPK--YDALRAIARGIPMDRVLVETDSPYIVPV 212 (262)
Q Consensus 182 ~~~--~~~~~e~v~~iPldriLlETDsP~l~p~ 212 (262)
-+. .+++.++++.+|++||.+-||+=+-+..
T Consensus 314 ~~e~V~~RI~~a~~~v~~e~l~~spdCGFas~~ 346 (372)
T PRK06233 314 DPDEIIARIDEAAEYVPLSNLALSTQCGFASTE 346 (372)
T ss_pred CHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCC
T ss_conf 999999999999971899888888888987534
No 271
>PRK13116 consensus
Probab=37.18 E-value=33 Score=15.47 Aligned_cols=21 Identities=29% Similarity=0.184 Sum_probs=8.7
Q ss_pred CCCHHHHHHHHCC--C--CEEECCC
Q ss_conf 4640234432103--5--2020233
Q gi|254780215|r 158 SSSQKLADICLEL--G--GYISFTG 178 (262)
Q Consensus 158 sG~~~~~~~~l~~--g--~y~S~~g 178 (262)
+.+.+-+++..+. | ||+|..|
T Consensus 157 tt~~~ri~~I~~~s~GFiY~VS~~G 181 (278)
T PRK13116 157 NASEKTLEGVSAASKGYIYAISRDG 181 (278)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9959999999971897399986352
No 272
>pfam08809 DUF1799 Phage related hypothetical protein (DUF1799). Members of this family are about 100 amino acids in length and are uncharacterized.
Probab=36.79 E-value=25 Score=16.19 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCC-----C--HHHHHHHHHHCCCCCCCEECCCCCCCC
Q ss_conf 1124454433446-----7--889988531001333210044677553
Q gi|254780215|r 59 CSVGTHPCHAHEE-----N--EVLVDELVCLASHPRVVAIGETGLDRY 99 (262)
Q Consensus 59 ~a~GiHP~~~~~~-----~--~~~~~~l~~l~~~~~~~aIGEiGLD~~ 99 (262)
.++|+.|....+. . ......+......-++-.-|=+||||.
T Consensus 2 a~~G~~~ed~~~~~~EVwpenw~av~lF~~~~TQWR~g~~G~~GLDY~ 49 (83)
T pfam08809 2 AAFGLRPEDYDEPDVEVWPENWPAVDLFIAMSTQWRVGPAGATGLDYS 49 (83)
T ss_pred CCCCCCHHHCCCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 745788322699864357474699999999718376568986403099
No 273
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=36.66 E-value=33 Score=15.42 Aligned_cols=147 Identities=15% Similarity=0.104 Sum_probs=74.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-----------
Q ss_conf 899999999869989999167987789999999855723321124454433446788998853100133-----------
Q gi|254780215|r 18 RHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHP----------- 86 (262)
Q Consensus 18 ~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~----------- 86 (262)
....+++..+.|-..++++-++-.+-.+..--+-+||..=.-.+|--+-.+..+. ...+.+.. .++.
T Consensus 78 ~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~-~i~dyl~~-An~~~~~lvqiEtr~ 155 (255)
T COG3836 78 DPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFG-RIADYLAQ-ANDEICLLVQIETRA 155 (255)
T ss_pred CHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHH-CCCCEEEEEEECCHH
T ss_conf 8899999962163136640358999999999961489977345441556665238-77899985-360308887873488
Q ss_pred ---CCCEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHH
Q ss_conf ---32100446-77553322111024678999987664204420330002333579998531000367533112146402
Q gi|254780215|r 87 ---RVVAIGET-GLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQK 162 (262)
Q Consensus 87 ---~~~aIGEi-GLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~ 162 (262)
.+-+|-.+ |+|- +|.---+||..++-|-+-+.-+-...+-.++......++..++ ++.+.+
T Consensus 156 gl~nLDaIaaveGVDg------------vFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagi---l~~~p~ 220 (255)
T COG3836 156 GLDNLDAIAAVEGVDG------------VFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGI---LAADPA 220 (255)
T ss_pred HHHHHHHHHCCCCCCE------------EEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC---CCCCHH
T ss_conf 8977888871578776------------9877788798749999999879999999999999964864410---358999
Q ss_pred HHHHHHCCCCEEEC-CCCCC
Q ss_conf 34432103520202-33221
Q gi|254780215|r 163 LADICLELGGYISF-TGMIT 181 (262)
Q Consensus 163 ~~~~~l~~g~y~S~-~g~i~ 181 (262)
.+++|+++|+-|=. +...+
T Consensus 221 ~a~~yl~lGa~fvavG~D~~ 240 (255)
T COG3836 221 DARRYLALGATFVAVGSDTG 240 (255)
T ss_pred HHHHHHHHCCEEEEEECCHH
T ss_conf 99999983886999825079
No 274
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=35.76 E-value=34 Score=15.32 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=10.8
Q ss_pred HHHHHHCCCCEEEEECCCHHHHH
Q ss_conf 99999869989999167987789
Q gi|254780215|r 22 IMRAHQANVLKMIAIAIKVKDFV 44 (262)
Q Consensus 22 i~~a~~~gv~~~i~~~~~~~~~~ 44 (262)
+.+..++. -++.+|...+.|.
T Consensus 47 ~~~l~~Ad--li~~nG~~lE~~l 67 (282)
T cd01017 47 IARIADAD--VFVYNGLGMETWA 67 (282)
T ss_pred HHHHHCCC--EEEEECCCCHHHH
T ss_conf 99996699--9999187836899
No 275
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=35.60 E-value=35 Score=15.31 Aligned_cols=56 Identities=25% Similarity=0.258 Sum_probs=32.3
Q ss_pred CCCCCEEEC--HHHHHHHHHHHHHHHHCC------CCCCCCEECC------CCHHHHHHHHCCCCEEECC
Q ss_conf 044203300--023335799985310003------6753311214------6402344321035202023
Q gi|254780215|r 122 TGIPLVIHS--RSADDDMAAILQEEMKKG------PFPFVIHCFS------SSQKLADICLELGGYISFT 177 (262)
Q Consensus 122 ~~~pv~iH~--r~a~~~~l~iL~~~~~~~------~~~~i~H~Fs------G~~~~~~~~l~~g~y~S~~ 177 (262)
...||+||. .++.+.++-+|-++.... |.-+++=--+ --.+..+++.+.|+..-+-
T Consensus 506 ~~rPVmIHRAilGS~ERFigiLiEh~~G~fP~WLaP~Qv~Iipi~~~~~~~Ya~~v~~~L~~~giRv~vD 575 (639)
T PRK12444 506 KVRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVAPVQVKVIPVSNAVHVQYADEVADKLAQAGVRVERD 575 (639)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 2598899957877789999999997279898565720069995377027999999999999789889998
No 276
>PRK13112 consensus
Probab=35.42 E-value=35 Score=15.29 Aligned_cols=47 Identities=26% Similarity=0.283 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHCC--C--CEEECCCCCCHH--HHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 4640234432103--5--202023322113--33223333210566717983078667
Q gi|254780215|r 158 SSSQKLADICLEL--G--GYISFTGMITFP--KYDALRAIARGIPMDRVLVETDSPYI 209 (262)
Q Consensus 158 sG~~~~~~~~l~~--g--~y~S~~g~i~~~--~~~~~~e~v~~iPldriLlETDsP~l 209 (262)
+.+.+-+++..+. | ||+|..|+---+ -...+.+.++.+-. -||.|-.
T Consensus 158 tt~~eRi~~i~~~s~GFiY~Vs~~GvTG~~~~~~~~~~~~i~~ik~-----~t~~Pv~ 210 (279)
T PRK13112 158 TTDDKRLPKVLANTSGFVYYVSMTGITGSALADTSAVGEAVARIKR-----HTDLPVC 210 (279)
T ss_pred CCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH-----HCCCCCE
T ss_conf 9989999999852788089983566667664564889999999997-----1789876
No 277
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=35.30 E-value=35 Score=15.28 Aligned_cols=168 Identities=17% Similarity=0.236 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHCCC--CCCCEECCCCCCCCCCCCCCHHHHHHHHHHH----H-HHHHCCCCCE-EECHHHHHHHHHHHHH
Q ss_conf 78899885310013--3321004467755332211102467899998----7-6642044203-3000233357999853
Q gi|254780215|r 72 NEVLVDELVCLASH--PRVVAIGETGLDRYHNAHTIEEQKVVFLRHI----E-ASRITGIPLV-IHSRSADDDMAAILQE 143 (262)
Q Consensus 72 ~~~~~~~l~~l~~~--~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql----~-lA~e~~~pv~-iH~r~a~~~~l~iL~~ 143 (262)
.+..++++..|..+ .+|| + +|.|-.....++..+..-|..-| + +---...-++ ||.-+..+++++++.+
T Consensus 242 ~e~~~~~v~~Lv~~gy~EvV-L--TGvnlg~Yg~d~~~~g~~L~~Ll~~i~~q~~g~~RiRlSS~~p~~~~~~l~~l~~s 318 (492)
T TIGR01579 242 LEKILEQVKELVAKGYKEVV-L--TGVNLGSYGDDLGENGSSLAKLLEQILKQIPGIERIRLSSIDPEDIDEELLELIKS 318 (492)
T ss_pred HHHHHHHHHHHHHCCCEEEE-E--EEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHCHHHHHHHHC
T ss_conf 78999999999737755999-8--40014445688876676089999999864688346763257765504899999734
Q ss_pred HHHCCCCCCCCEE--CCCCHHHHHHHHCC----------------CCEEECCCC--CCHHH-----HHHHHHHHHCCCCC
Q ss_conf 1000367533112--14640234432103----------------520202332--21133-----32233332105667
Q gi|254780215|r 144 EMKKGPFPFVIHC--FSSSQKLADICLEL----------------GGYISFTGM--ITFPK-----YDALRAIARGIPMD 198 (262)
Q Consensus 144 ~~~~~~~~~i~H~--FsG~~~~~~~~l~~----------------g~y~S~~g~--i~~~~-----~~~~~e~v~~iPld 198 (262)
..+-. -++|= =|||-..+++.-.. .=-++||.. |-|+. -++..++++.+|+-
T Consensus 319 ~~~l~---PHlHlsLQSGsd~vLkrM~R~Y~r~~~~~~v~~lr~~~p~~~~gtD~IVGFP~E~eedFq~t~~~~~~~~~~ 395 (492)
T TIGR01579 319 EKKLC---PHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVQKLRSVRPDYAFGTDVIVGFPGESEEDFQETLRIVKEIEFS 395 (492)
T ss_pred CCCCC---CCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 76416---320000222773798424878876899999999985077630376037408889889999999998526602
Q ss_pred CEEEEECCCCCCCCCCCCCCCCHHHH-H---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 17983078667877768875882449-9---99999998728998999999999999984256
Q gi|254780215|r 199 RVLVETDSPYIVPVSCQGKRNEPAYV-V---NTAKALAKEKDVSYEDLMEETTKNALKLFSKI 257 (262)
Q Consensus 199 riLlETDsP~l~p~~~r~~~n~P~~i-~---~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~ 257 (262)
+|-+ .||..++++|+.- + .+=+.+++ .=+..|.+.-.+|..++..|+
T Consensus 396 ~~Hi---------FpyS~R~~T~A~~m~~rf~v~~~~~K---eR~~~L~~~~~~~~~~~~~k~ 446 (492)
T TIGR01579 396 GLHI---------FPYSARPGTPASAMDDRFKVPETIKK---ERVKRLKELAEKVYQEYLKKY 446 (492)
T ss_pred EEEE---------ECCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_conf 1335---------42688432812047874427611588---999999999888889999986
No 278
>pfam06187 DUF993 Protein of unknown function (DUF993). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=35.25 E-value=35 Score=15.27 Aligned_cols=64 Identities=23% Similarity=0.401 Sum_probs=36.1
Q ss_pred CCCCCCC--CCCCCHHHHHHHHHHHHHHHHCC-CCCEEECHH------HHHHHHHHHHHHHHCCCCCCCCEEC
Q ss_conf 6775533--22111024678999987664204-420330002------3335799985310003675331121
Q gi|254780215|r 94 TGLDRYH--NAHTIEEQKVVFLRHIEASRITG-IPLVIHSRS------ADDDMAAILQEEMKKGPFPFVIHCF 157 (262)
Q Consensus 94 iGLD~~~--~~~~~e~Q~~vF~~ql~lA~e~~-~pv~iH~r~------a~~~~l~iL~~~~~~~~~~~i~H~F 157 (262)
+|-|.-. ...+.+.-+..+++|++.-++.+ ++|.+-||- .-++-.++-.........++|+||-
T Consensus 114 ~GTDhL~p~~~~~ld~V~~AY~eQ~~~ve~~Gg~~IlMASRaLA~~A~~pdDY~~VY~~vL~q~~~PVILHWL 186 (382)
T pfam06187 114 AGTDHLAPSPAATLDDVIAAYEEQIEAVEAAGGRVILMASRALARVARSPDDYARVYGRVLAQVDEPVILHWL 186 (382)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 4767789878889999999999999999972996999730889987389787999999999863798897512
No 279
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=34.59 E-value=36 Score=15.20 Aligned_cols=133 Identities=13% Similarity=0.087 Sum_probs=55.5
Q ss_pred HHHHHHHHHCCCCEE-EEECCCHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCC
Q ss_conf 999999998699899-99167987-7899999998557233211244544334467889988531001333210044677
Q gi|254780215|r 19 HDVIMRAHQANVLKM-IAIAIKVK-DFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGL 96 (262)
Q Consensus 19 ~~~i~~a~~~gv~~~-i~~~~~~~-~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGL 96 (262)
.+.++++.+.|...+ +-+|.++. +..++..+.+..++.+...+-.| .. ++....-.+.+ ++-+.|+
T Consensus 90 ~~~~~~~~~~G~~~~Kikvg~~~~~d~~~v~~ir~~~g~~~~l~vDan--~~--~~~~~A~~~~~--------~l~~~~i 157 (265)
T cd03315 90 AEEARRALEAGFRTFKLKVGRDPARDVAVVAALREAVGDDAELRVDAN--RG--WTPKQAIRALR--------ALEDLGL 157 (265)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCC--CC--CCHHHHHHHHH--------HHCCCCC
T ss_conf 999999997599989997689859999999999987299967985787--78--89999999998--------6400585
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC-HHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHC
Q ss_conf 5533221110246789999876642044203300-023335799985310003675331121464023443210
Q gi|254780215|r 97 DRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS-RSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLE 169 (262)
Q Consensus 97 D~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~-r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~ 169 (262)
.+....-+.+ + ++..-+|+...+.||.... .....++.+.+....-.. .. +--+..|....+.++.+
T Consensus 158 ~w~EeP~~~~-d---~~~~~~L~~~~~ipIa~gEs~~~~~~~~~~i~~~~~d~-v~-~d~~~~GGit~~~kia~ 225 (265)
T cd03315 158 DYVEQPLPAD-D---LEGRAALARATDTPIMADESAFTPHDAFRELALGAADA-VN-IKTAKTGGLTKAQRVLA 225 (265)
T ss_pred EEEECCCCCC-C---HHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCHHH-EE-ECCCCCCHHHHHHHHHH
T ss_conf 4884789989-9---99999998519999990898799999999998726134-14-08776474999999999
No 280
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=34.26 E-value=36 Score=15.17 Aligned_cols=175 Identities=14% Similarity=0.088 Sum_probs=72.1
Q ss_pred HHCCHHHHHHHHHHCCCCEEEEECCC------HHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCC----------------
Q ss_conf 52268999999998699899991679------87789999999855723321124454-43344----------------
Q gi|254780215|r 14 FDEDRHDVIMRAHQANVLKMIAIAIK------VKDFVPLIKLCQDYPSSIFCSVGTHP-CHAHE---------------- 70 (262)
Q Consensus 14 ~~~d~~~~i~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~~p~~i~~a~GiHP-~~~~~---------------- 70 (262)
+..|..++++...+.|.+.+..+-.+ +..+.-..++++...-.+-..=||.- ..+..
T Consensus 27 y~~dP~~~A~~~~~~Ga~~lhvvDLd~A~~g~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~~~~~l~~GadkVvigS~a~ 106 (241)
T PRK00748 27 YGDDPLAQAQAWQDQGAEWLHLVDLDGAFAGRPVNLELIEAIVAAVDIPVQLGGGIRDLETVEAYLDAGVARVIIGTAAV 106 (241)
T ss_pred ECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHH
T ss_conf 07899999999998799989999785420288207999999998679999982770749999999976977588647103
Q ss_pred CCHHHHHHHHHHCCCCCCCEECCCCCCCCCCC---C--CCHHHHHHHHHHHHHHHHCCC-CCEEECHHHHH----HHHHH
Q ss_conf 67889988531001333210044677553322---1--110246789999876642044-20330002333----57999
Q gi|254780215|r 71 ENEVLVDELVCLASHPRVVAIGETGLDRYHNA---H--TIEEQKVVFLRHIEASRITGI-PLVIHSRSADD----DMAAI 140 (262)
Q Consensus 71 ~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~---~--~~e~Q~~vF~~ql~lA~e~~~-pv~iH~r~a~~----~~l~i 140 (262)
.+.+.+.++..... .+++ + +||..... . .......+ ...++...+++. -+++.+.+..+ -=+++
T Consensus 107 ~n~~~i~~~~~~~g-~~iv-v---siD~k~~~v~~~gw~~~t~~~~-~~~i~~~~~~G~~eii~tdI~~DGt~~G~d~~l 180 (241)
T PRK00748 107 KNPELVKEACKKFP-GRIV-V---GLDARDGKVATRGWQEVSGVDL-EDLAKRFEDAGVAAIIYTDISRDGTLSGPNVEL 180 (241)
T ss_pred HCHHHHHHHHHHCC-CCEE-E---EEEECCCEEECCCCCCCCCCCH-HHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHH
T ss_conf 39689999986235-5579-9---9982166540157554679748-999999985587569998870568547689999
Q ss_pred HHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCC----CHHHHHHHHHHHHCC
Q ss_conf 8531000367533112146402344321035202023322----113332233332105
Q gi|254780215|r 141 LQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMI----TFPKYDALRAIARGI 195 (262)
Q Consensus 141 L~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i----~~~~~~~~~e~v~~i 195 (262)
+++.....+.+++.-.=-|+.+.++++.+++.. +++|++ .|...-.+.|+++.+
T Consensus 181 ~~~i~~~~~ipviasGGv~s~~Di~~L~~~~~~-gv~gviiG~Aly~g~i~l~eal~~~ 238 (241)
T PRK00748 181 TRELAAATPIPVIASGGVSSLDDIRALKALGPE-GVEGVIVGKALYEGKFDLAEALACW 238 (241)
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCC-CCCEEEEEHHHHCCCCCHHHHHHHH
T ss_conf 999998689989998899999999999860317-9248998789877998999999986
No 281
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=34.25 E-value=36 Score=15.17 Aligned_cols=121 Identities=19% Similarity=0.254 Sum_probs=74.3
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEC------------
Q ss_conf 99869989999167987789999999855723321124454433446788998853100133321004------------
Q gi|254780215|r 25 AHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIG------------ 92 (262)
Q Consensus 25 a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIG------------ 92 (262)
|...|..-++.++.+..|.--++.+++...-. -+ .-||.. +++..++++.++-. +.+.-||
T Consensus 23 A~~~~~~~VIlvsDn~aD~~lA~~iaellNA~---Vl-ttpwg~--ynes~~~eI~~lnp-d~VLIIGGp~AVs~~yE~~ 95 (337)
T COG2247 23 AQSQNTTVVILVSDNEADLLLALPIAELLNAP---VL-TTPWGI--YNESVLDEIIELNP-DLVLIIGGPIAVSPNYENA 95 (337)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHHHCCE---EE-ECCCCC--CCHHHHHHHHHHCC-CEEEEECCCCCCCHHHHHH
T ss_conf 44148159999566077788756799975890---57-267542--13999999996198-6599978987578658999
Q ss_pred --CCCCCCCCC-----CCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf --467755332-----2111024678999987664204420330002333579998531000367533112
Q gi|254780215|r 93 --ETGLDRYHN-----AHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHC 156 (262)
Q Consensus 93 --EiGLD~~~~-----~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~ 156 (262)
-.|.-+-|- .++-+.-..+|++|-.-|-+--+.+++|-.+-.+++++.|++ +..++++-.
T Consensus 96 Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwDy~~~~~e~~k~----~~~p~~~~n 162 (337)
T COG2247 96 LKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWDYADALMELMKE----GIVPVILKN 162 (337)
T ss_pred HHHCCCEEEEECCCCHHHHHHHHHHHHHHHCHHHHCCEEEEEEECCCCHHHHHHHHHC----CCCEEEECC
T ss_conf 9857957999337626899999999997644233158179999660227778888753----753267416
No 282
>COG1647 Esterase/lipase [General function prediction only]
Probab=34.19 E-value=16 Score=17.46 Aligned_cols=15 Identities=0% Similarity=0.299 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999984
Q gi|254780215|r 240 EDLMEETTKNALKLF 254 (262)
Q Consensus 240 eei~~~~~~N~~~~f 254 (262)
++=.+++.++-.+|+
T Consensus 227 D~Erd~v~e~V~~FL 241 (243)
T COG1647 227 DKERDQVEEDVITFL 241 (243)
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 265899999999986
No 283
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=34.13 E-value=36 Score=15.15 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=74.5
Q ss_pred HHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 8999999998699899991679-------877899999998557-23321124454433446788998853100133321
Q gi|254780215|r 18 RHDVIMRAHQANVLKMIAIAIK-------VKDFVPLIKLCQDYP-SSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVV 89 (262)
Q Consensus 18 ~~~~i~~a~~~gv~~~i~~~~~-------~~~~~~~~~l~~~~p-~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~ 89 (262)
..++++...+.|+..++.+|++ .++..++.+.+.+.- +.+-.-.|+=- ..+.+..+ +.+.++
T Consensus 27 ~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~----~~t~eai~-lak~a~----- 96 (299)
T COG0329 27 LRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS----NSTAEAIE-LAKHAE----- 96 (299)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCEEEECCC----CCHHHHHH-HHHHHH-----
T ss_conf 99999999984998899798665722169999999999999996897778986287----77999999-999999-----
Q ss_pred EECCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH---HHHHHHHHHHHHHHHCCC--------------
Q ss_conf 0044677553---32211102467899998766420442033000---233357999853100036--------------
Q gi|254780215|r 90 AIGETGLDRY---HNAHTIEEQKVVFLRHIEASRITGIPLVIHSR---SADDDMAAILQEEMKKGP-------------- 149 (262)
Q Consensus 90 aIGEiGLD~~---~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r---~a~~~~l~iL~~~~~~~~-------------- 149 (262)
+.|-|-. -....+..|..++...-.+|...++|++|=.+ -...-..+.+.+....+.
T Consensus 97 ---~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~~gd~~~~ 173 (299)
T COG0329 97 ---KLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSGDLDRL 173 (299)
T ss_pred ---HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHH
T ss_conf ---70999999848978898979999999999985189989997875248999999999982789889998478899999
Q ss_pred ------CCC-CCEECCCCHHHHHHHHCCCC--EEECCCC
Q ss_conf ------753-31121464023443210352--0202332
Q gi|254780215|r 150 ------FPF-VIHCFSSSQKLADICLELGG--YISFTGM 179 (262)
Q Consensus 150 ------~~~-i~H~FsG~~~~~~~~l~~g~--y~S~~g~ 179 (262)
.+. =+-.|+|+-+++-..+.+|. ++|..+.
T Consensus 174 ~~~~~~~~~~~f~v~~G~d~~~~~~~~~G~~G~is~~~N 212 (299)
T COG0329 174 EEIIAALGDRDFIVLSGDDELALPALLLGADGVISVTAN 212 (299)
T ss_pred HHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEECCCH
T ss_conf 999986487662898266588889986779858841001
No 284
>TIGR03586 PseI pseudaminic acid synthase.
Probab=34.03 E-value=37 Score=15.14 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=35.9
Q ss_pred HHHHHHHHCCCCCEEECHHH-HHH---HHHHHHHHHHCCCCCCCCEECCCCH--------HHHHHHHC-CCCEEECCCC
Q ss_conf 99876642044203300023-335---7999853100036753311214640--------23443210-3520202332
Q gi|254780215|r 114 RHIEASRITGIPLVIHSRSA-DDD---MAAILQEEMKKGPFPFVIHCFSSSQ--------KLADICLE-LGGYISFTGM 179 (262)
Q Consensus 114 ~ql~lA~e~~~pv~iH~r~a-~~~---~l~iL~~~~~~~~~~~i~H~FsG~~--------~~~~~~l~-~g~y~S~~g~ 179 (262)
..|+-..+.++|++|=+-.+ ..| +++++++.. ...-+++||.+.=+ ..++.+.+ .++.+|||.-
T Consensus 125 ~Li~~iak~~kpviiStG~s~~~EI~~av~~~~~~~--~~~i~llhC~s~YPt~~~~~nL~~I~~lk~~f~~~vG~SDH 201 (327)
T TIGR03586 125 PLIRYVAKTGKPIIMSTGIATLEEIEEAVEAAREAG--CKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSDH 201 (327)
T ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHC--CCCEEECCCCCCCCCCHHHCCHHHHHHHHHHCCCCEEECCC
T ss_conf 699998664886799688875456788888776502--55715652585899893774367899999974997583898
No 285
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=34.00 E-value=34 Score=15.37 Aligned_cols=46 Identities=24% Similarity=0.177 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCC-EECCCCHHHHHHHHCCCCEEECCCC
Q ss_conf 335799985310003675331-1214640234432103520202332
Q gi|254780215|r 134 DDDMAAILQEEMKKGPFPFVI-HCFSSSQKLADICLELGGYISFTGM 179 (262)
Q Consensus 134 ~~~~l~iL~~~~~~~~~~~i~-H~FsG~~~~~~~~l~~g~y~S~~g~ 179 (262)
-+..++-|.++.+.+.+-.++ =|-||..++++++-++||-.+|++.
T Consensus 123 idrFldelp~~lk~gGrv~l~~SSl~~e~~~~~kl~~~GF~~ei~a~ 169 (183)
T TIGR00537 123 IDRFLDELPEYLKEGGRVQLIQSSLSDEKDTLDKLDELGFKVEIVAE 169 (183)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf 88887656888705998999960668868899887615884799863
No 286
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088 Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d..
Probab=33.81 E-value=37 Score=15.12 Aligned_cols=154 Identities=15% Similarity=0.202 Sum_probs=91.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCC
Q ss_conf 89999999986998999916798778999999985572332112445443344678899885310013332100446775
Q gi|254780215|r 18 RHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLD 97 (262)
Q Consensus 18 ~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD 97 (262)
.+.++++|+-.||+++|-||....|. +..+++.+|+ +-.++= +....-|-.-+...+---.+|+ --|-.|
T Consensus 138 ~~LL~~~A~L~~V~~lIDVGGGIGDI--~AAl~~~FP~-L~~T~~----NLP~A~DLV~EN~A~KG~ADR~---~~~A~D 207 (306)
T TIGR02716 138 IELLLKRAKLDDVKKLIDVGGGIGDI--AAALLKAFPE-LDVTLL----NLPSALDLVRENVAEKGLADRI---RGVAVD 207 (306)
T ss_pred HHHHHHHHHHHCCCEEEECCCCHHHH--HHHHHHHCCC-CCEEEE----CCCCHHHHHHHHHHHCCCCCCC---CCEEEE
T ss_conf 99999875163132543338887789--9999973775-232312----0540556776655414510046---631565
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHH--------HHHHHHHHHCCCCCCCCEECCCCHHHHHHHH-
Q ss_conf 5332211102467899998766420442033000233357--------9998531000367533112146402344321-
Q gi|254780215|r 98 RYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDM--------AAILQEEMKKGPFPFVIHCFSSSQKLADICL- 168 (262)
Q Consensus 98 ~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~--------l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l- 168 (262)
-|+..+|.. ---.|.+.|=-+++ ++ .-+=||+|++.+ +|..= ..|. |= |.+.+.-++
T Consensus 208 ~Y~E~YP~~-DAVLF~RILY~~N~-Ql-~T~l~~KAyDAl~SGGR~LILDMVI----~DP~----~P---NyDYL~HY~~ 273 (306)
T TIGR02716 208 IYKESYPEA-DAVLFSRILYSANE-QL-STILLKKAYDALRSGGRLLILDMVI----DDPE----NP---NYDYLSHYLL 273 (306)
T ss_pred ECCCCCCCC-HHHHHHHHHHHHHH-HH-HHHHHHHHHHHCCCCCEEEEEEEEE----CCCC----CC---CHHHHHHHHH
T ss_conf 033875771-16567788764467-89-9999998875225788078654343----1856----77---7146899998
Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 035202023322113332233332105667
Q gi|254780215|r 169 ELGGYISFTGMITFPKYDALRAIARGIPMD 198 (262)
Q Consensus 169 ~~g~y~S~~g~i~~~~~~~~~e~v~~iPld 198 (262)
..|.=||+= -||..-...++++++.-.
T Consensus 274 ~~GM~FSVL---~FK~~A~Y~~~L~~~Gy~ 300 (306)
T TIGR02716 274 AIGMGFSVL---EFKDQAVYKDLLRSLGYK 300 (306)
T ss_pred HCCCCCHHH---HHHHCCCCHHHHHHCCCC
T ss_conf 716661012---110023007999855972
No 287
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=33.41 E-value=37 Score=15.08 Aligned_cols=50 Identities=10% Similarity=-0.000 Sum_probs=26.6
Q ss_pred HCCHHHHHHHHHHCCCCEEEEECCC-----HHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 2268999999998699899991679-----8778999999985572332112445
Q gi|254780215|r 15 DEDRHDVIMRAHQANVLKMIAIAIK-----VKDFVPLIKLCQDYPSSIFCSVGTH 64 (262)
Q Consensus 15 ~~d~~~~i~~a~~~gv~~~i~~~~~-----~~~~~~~~~l~~~~p~~i~~a~GiH 64 (262)
..|.-+++++..+.|.+.+..+-.+ ...+.-+.++++...-.+-..=||+
T Consensus 28 ~~dP~~~a~~~~~~Ga~~lhvvDLdaa~g~~~N~~~I~~i~~~~~~piqvGGGIr 82 (231)
T PRK13586 28 LGDPLKIAEELYNEGYDSIHVVDLDAAEGKGDNEEYIKRICKIGFSWIQVGGGIR 82 (231)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 6899999999998799989999671568998439999999974598579856717
No 288
>PRK13113 consensus
Probab=33.13 E-value=38 Score=15.05 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=14.3
Q ss_pred CEECCCCHHHHHHHHCC--C--CEEECCCC
Q ss_conf 11214640234432103--5--20202332
Q gi|254780215|r 154 IHCFSSSQKLADICLEL--G--GYISFTGM 179 (262)
Q Consensus 154 ~H~FsG~~~~~~~~l~~--g--~y~S~~g~ 179 (262)
+=+-+-+.+-+++..+. | ||+|..|.
T Consensus 153 lvaPtt~~~Ri~~i~~~a~gFiY~Vs~~Gv 182 (263)
T PRK13113 153 LATPTTDDRRLPKVLQNTSGFVYYVSITGI 182 (263)
T ss_pred EECCCCCHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 947999999999998338984899834556
No 289
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=33.11 E-value=38 Score=15.05 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=36.9
Q ss_pred HHHHHHHHHHCCCCCEEECHHHHHH-HHHHHHHHHHCCCCCCCCEECCC-CHHHHHHHHCCCC-EEECCCCCCHHHHHHH
Q ss_conf 9999876642044203300023335-79998531000367533112146-4023443210352-0202332211333223
Q gi|254780215|r 112 FLRHIEASRITGIPLVIHSRSADDD-MAAILQEEMKKGPFPFVIHCFSS-SQKLADICLELGG-YISFTGMITFPKYDAL 188 (262)
Q Consensus 112 F~~ql~lA~e~~~pv~iH~r~a~~~-~l~iL~~~~~~~~~~~i~H~FsG-~~~~~~~~l~~g~-y~S~~g~i~~~~~~~~ 188 (262)
|++.-++.+..+.|+++|--.+-.+ ..+.+..+ .+-+|.=+| +.+++++.+++|. .+-|+..+...=...+
T Consensus 193 ~~~L~~I~~~~~vPLVLHGgSgvpd~~~~~~~~~------gg~~~~~~G~~~e~i~~ai~~Gv~KiNI~Tdl~~a~~~~~ 266 (307)
T PRK05835 193 FERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDA------GGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEV 266 (307)
T ss_pred HHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHC------CCCCCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHH
T ss_conf 8999999841799879568987607888887502------6656788899999999999869769986877899999999
Q ss_pred HHHHHC
Q ss_conf 333210
Q gi|254780215|r 189 RAIARG 194 (262)
Q Consensus 189 ~e~v~~ 194 (262)
|+.+..
T Consensus 267 r~~~~e 272 (307)
T PRK05835 267 RKVANE 272 (307)
T ss_pred HHHHHH
T ss_conf 999984
No 290
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=32.91 E-value=38 Score=15.02 Aligned_cols=104 Identities=11% Similarity=0.107 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 68999999998699899991679-------87789999999855-72332112445443344678899885310013332
Q gi|254780215|r 17 DRHDVIMRAHQANVLKMIAIAIK-------VKDFVPLIKLCQDY-PSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRV 88 (262)
Q Consensus 17 d~~~~i~~a~~~gv~~~i~~~~~-------~~~~~~~~~l~~~~-p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~ 88 (262)
.+...++...+.|+..++..|++ .++..+..+.+.+. ++.+...+|+=.. ...+..+ +.+.+.+..+
T Consensus 22 ~l~~~v~~l~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~----~t~~~i~-~a~~A~~~Ga 96 (284)
T cd00950 22 ALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSN----NTAEAIE-LTKRAEKAGA 96 (284)
T ss_pred HHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCC----CHHHHHH-HHHHHHHCCC
T ss_conf 9999999999769998996843512424899999999999999718975077507877----8999999-9999998399
Q ss_pred CEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf 100446775533221110246789999876642044203300
Q gi|254780215|r 89 VAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS 130 (262)
Q Consensus 89 ~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~ 130 (262)
-|| =+--.||.. -.|..+++..-++|...++|++++.
T Consensus 97 dai-~v~pP~y~~----~s~~~l~~~~~~ia~a~~lPi~lYn 133 (284)
T cd00950 97 DAA-LVVTPYYNK----PSQEGLYAHFKAIAEATDLPVILYN 133 (284)
T ss_pred CEE-EECCCCCCC----CCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 989-962665789----7999999999999755599779873
No 291
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=32.69 E-value=38 Score=15.00 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=13.7
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHH
Q ss_conf 999998699899991679877899
Q gi|254780215|r 22 IMRAHQANVLKMIAIAIKVKDFVP 45 (262)
Q Consensus 22 i~~a~~~gv~~~i~~~~~~~~~~~ 45 (262)
+.+..++. -++.+|...+.|..
T Consensus 47 ~~~l~~Ad--liv~~G~~lE~wl~ 68 (286)
T cd01019 47 ARKLQEAD--LVVWIGPDLEAFLD 68 (286)
T ss_pred HHHHHCCC--EEEEECCCCHHHHH
T ss_conf 99996699--99996997246899
No 292
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=32.64 E-value=38 Score=15.00 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=42.8
Q ss_pred HHHHHHHHHCCCCCCCEECCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHCCCCCEEEC-HHHHHHHHHHHHH
Q ss_conf 899885310013332100446775533221--110246789999876642044203300-0233357999853
Q gi|254780215|r 74 VLVDELVCLASHPRVVAIGETGLDRYHNAH--TIEEQKVVFLRHIEASRITGIPLVIHS-RSADDDMAAILQE 143 (262)
Q Consensus 74 ~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~--~~e~Q~~vF~~ql~lA~e~~~pv~iH~-r~a~~~~l~iL~~ 143 (262)
..++.+..++.+.++..| =|||.+.-+.+ +...+.+-|.+. |...+++||.++. |-...+..+.|.+
T Consensus 40 ~~~~~l~~li~~~~~~~v-VVGlP~~m~g~~~~~~~~~~~f~~~--L~~r~~lpv~l~DERltTv~A~~~L~~ 109 (141)
T COG0816 40 QDFNALLKLVKEYQVDTV-VVGLPLNMDGTEGPRAELARKFAER--LKKRFNLPVVLWDERLSTVEAERMLIE 109 (141)
T ss_pred HHHHHHHHHHHHHCCCEE-EEECCCCCCCCCCHHHHHHHHHHHH--HHHHCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 569999999998388879-9966768888713469999999999--987649878998186579999999997
No 293
>PRK00865 glutamate racemase; Provisional
Probab=32.58 E-value=39 Score=14.99 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=25.5
Q ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999999869989999167987789999999855723321124454
Q gi|254780215|r 21 VIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHP 65 (262)
Q Consensus 21 ~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP 65 (262)
+++...+.|++.+|+ +|+-.+..-.-.|.++|+ .|-+|+-|
T Consensus 56 i~~~l~~~~~k~iVi-ACNTasa~al~~lr~~~~---iPiiGi~P 96 (262)
T PRK00865 56 IVEFLLEQGVKMLVI-ACNTASAVALEDLRERLD---IPVVGIVP 96 (262)
T ss_pred HHHHHHHCCCCEEEE-ECCCHHHHHHHHHHHHCC---CCEEEECH
T ss_conf 999999779989998-167378999999996479---97798448
No 294
>pfam04072 LCM Leucine carboxyl methyltransferase. Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence.
Probab=32.57 E-value=30 Score=15.72 Aligned_cols=11 Identities=55% Similarity=0.987 Sum_probs=8.6
Q ss_pred CCCEECCCCCCC
Q ss_conf 321004467755
Q gi|254780215|r 87 RVVAIGETGLDR 98 (262)
Q Consensus 87 ~~~aIGEiGLD~ 98 (262)
++|-+| +|||-
T Consensus 73 qVV~LG-aGlDT 83 (175)
T pfam04072 73 QVVILG-AGLDT 83 (175)
T ss_pred EEEEEC-CCCCC
T ss_conf 899969-64335
No 295
>pfam05705 DUF829 Eukaryotic protein of unknown function (DUF829). This family consists of several uncharacterized eukaryotic proteins.
Probab=32.51 E-value=35 Score=15.25 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHCCCH
Q ss_conf 2449999999998728998
Q gi|254780215|r 221 PAYVVNTAKALAKEKDVSY 239 (262)
Q Consensus 221 P~~i~~~~~~iA~i~~~~~ 239 (262)
+..+...++.. +-+|.++
T Consensus 193 ~~dvE~~~~~~-r~~G~~V 210 (239)
T pfam05705 193 WRDVERHIEEA-RQRGVSV 210 (239)
T ss_pred HHHHHHHHHHH-HHCCCEE
T ss_conf 99999999999-9769968
No 296
>PRK05748 replicative DNA helicase; Provisional
Probab=32.50 E-value=39 Score=14.98 Aligned_cols=131 Identities=19% Similarity=0.137 Sum_probs=65.6
Q ss_pred HHHHHHHHHH--HHHHCCCCCEEECHHH--HHHHHHHHHHHHHCCCCCCCCEECCCCH--HH-------HHHHHCCCCEE
Q ss_conf 4678999987--6642044203300023--3357999853100036753311214640--23-------44321035202
Q gi|254780215|r 108 QKVVFLRHIE--ASRITGIPLVIHSRSA--DDDMAAILQEEMKKGPFPFVIHCFSSSQ--KL-------ADICLELGGYI 174 (262)
Q Consensus 108 Q~~vF~~ql~--lA~e~~~pv~iH~r~a--~~~~l~iL~~~~~~~~~~~i~H~FsG~~--~~-------~~~~l~~g~y~ 174 (262)
-+..|.-++. .|.+.++||.+.+-.. ..-+.+++...... +.. +-.+|.. +. +.++-++..|+
T Consensus 215 GKTa~alnia~~~a~~~~~~v~~fSlEM~~~~l~~R~la~~s~v-~~~---~i~~g~l~~~~~~~~~~a~~~l~~~~l~i 290 (448)
T PRK05748 215 GKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGRI-DQQ---KLRTGQLTDEDWPKLTIAVGSLSDAPIYI 290 (448)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCC-CHH---HHHCCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 76899999999999856980899817788889999999997467-777---77628999999999999999986598378
Q ss_pred ECCCCCCHHH-HHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 0233221133-322333321056-67179830786678777688---7588244999999999872899899999
Q gi|254780215|r 175 SFTGMITFPK-YDALRAIARGIP-MDRVLVETDSPYIVPVSCQG---KRNEPAYVVNTAKALAKEKDVSYEDLME 244 (262)
Q Consensus 175 S~~g~i~~~~-~~~~~e~v~~iP-ldriLlETDsP~l~p~~~r~---~~n~P~~i~~~~~~iA~i~~~~~eei~~ 244 (262)
.=++.++-.. ..+.|.+.+..+ ++-+.+ |-=-+...+-+. +..+-+.|..-+..+|+-.++++--+++
T Consensus 291 ~d~~~~ti~~i~~~~r~~~~~~~~~~~vvi--DYlqli~~~~~~~~~r~~ev~~isr~lK~lAkel~ipvi~lsQ 363 (448)
T PRK05748 291 DDTPGIKVTEIRARCRRLAQEHGGLGLIVI--DYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPVIALSQ 363 (448)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCCEEEE--EHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 558988689999999999997599889997--1686447778776439999999999999999996998899702
No 297
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=32.26 E-value=39 Score=14.96 Aligned_cols=90 Identities=17% Similarity=0.256 Sum_probs=51.6
Q ss_pred HHHHHHHHHHCC-CCCCCEECCCCCCCCCCCCCCH--HHHHHHHHHHHHHH-HCCCCCEEECHHHH---------HH---
Q ss_conf 889988531001-3332100446775533221110--24678999987664-20442033000233---------35---
Q gi|254780215|r 73 EVLVDELVCLAS-HPRVVAIGETGLDRYHNAHTIE--EQKVVFLRHIEASR-ITGIPLVIHSRSAD---------DD--- 136 (262)
Q Consensus 73 ~~~~~~l~~l~~-~~~~~aIGEiGLD~~~~~~~~e--~Q~~vF~~ql~lA~-e~~~pv~iH~r~a~---------~~--- 136 (262)
++.++.+....+ ...+| |.=+|++.+.++.. .....+.+|+.... .-++|+++=+|..+ ++
T Consensus 12 ~~~~~~a~~~~~~gaDiV---E~RvD~l~~~~~~~~I~~v~~~~~~~~~~~~~~~~P~ifT~R~~~eGG~~~~~~~~~~~ 88 (239)
T TIGR01093 12 EEALAEAEKIKEVGADIV---ELRVDLLKDVSSNNDISSVDALIEQLSELLASVDKPLIFTIRTIKEGGKFPGDEEEYLE 88 (239)
T ss_pred HHHHHHHHHHHHCCCCEE---EEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHH
T ss_conf 899999999862699678---74122441114435625799999999998436898758886230006788889899999
Q ss_pred -----------------------HHHHHHHHHHCCCCCCCC--EECCCCHHHHH
Q ss_conf -----------------------799985310003675331--12146402344
Q gi|254780215|r 137 -----------------------MAAILQEEMKKGPFPFVI--HCFSSSQKLAD 165 (262)
Q Consensus 137 -----------------------~l~iL~~~~~~~~~~~i~--H~FsG~~~~~~ 165 (262)
+++.+-+...++..|+|+ |-|.|++++.+
T Consensus 89 ~l~~~~~~~~~d~vDiEL~~~~~~~~~~~~~a~~~~~Kii~S~HdF~~TPs~~~ 142 (239)
T TIGR01093 89 ELKEAIESGLADFVDIELFLPEDAVKELIREAKKGKTKIIMSNHDFQKTPSWEE 142 (239)
T ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
T ss_conf 999999606995587506783689999999997379579997057778888310
No 298
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.21 E-value=39 Score=14.95 Aligned_cols=123 Identities=13% Similarity=0.099 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHCCCCEEEEEC---------CCHHHHHHHHHHHHHCCCCCCCCCCCCCCC------CCCCCH----HHHH
Q ss_conf 689999999986998999916---------798778999999985572332112445443------344678----8998
Q gi|254780215|r 17 DRHDVIMRAHQANVLKMIAIA---------IKVKDFVPLIKLCQDYPSSIFCSVGTHPCH------AHEENE----VLVD 77 (262)
Q Consensus 17 d~~~~i~~a~~~gv~~~i~~~---------~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~------~~~~~~----~~~~ 77 (262)
.+++.++.+.+.|.+.+=..+ .+..+-.++.++++.|.-.| +|++|.. ....++ ..++
T Consensus 14 ple~a~~~aa~lGydgVEi~~~~ph~~~~~~~~~~~~~ik~l~~~~gl~v---~~~~p~~~~~~~~l~~~d~~~R~~~i~ 90 (276)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPI---IGYTPETNGYPYNMMLGDEHMRRESLD 90 (276)
T ss_pred CHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE---EEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999998499989973787654676546557999999999809868---995532137765336798789899999
Q ss_pred HHHHHCC------CCCC-CEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH--------HHHHHHHHHH
Q ss_conf 8531001------3332-10044677553322111024678999987664204420330002--------3335799985
Q gi|254780215|r 78 ELVCLAS------HPRV-VAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS--------ADDDMAAILQ 142 (262)
Q Consensus 78 ~l~~l~~------~~~~-~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~--------a~~~~l~iL~ 142 (262)
.++..+. -+.+ +.-|-.|.+- .....++.=.+.|..-.+.|.+.+..+.|=.-. .-++++++++
T Consensus 91 ~~k~~id~A~~Lga~~v~v~~~~~~~~~-~~~~~w~~~~e~l~~l~~~A~~~Gv~l~lE~l~~~e~~li~~~~~~~~~~~ 169 (276)
T PRK09856 91 MIKLAMDMAKEMNAGYTLISAAHAGYLT-PPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALA 169 (276)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHCCHHHHHHHHH
T ss_conf 9999999999849984999368777888-979999999999999999999739989995176111420068999999998
Q ss_pred H
Q ss_conf 3
Q gi|254780215|r 143 E 143 (262)
Q Consensus 143 ~ 143 (262)
.
T Consensus 170 ~ 170 (276)
T PRK09856 170 L 170 (276)
T ss_pred H
T ss_conf 5
No 299
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family; InterPro: IPR010140 This entry represents the histidinol phosphate phosphatase, HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyses the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in Escherichia coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; not all members of this family may act on HisJ.; GO: 0004401 histidinol-phosphatase activity, 0000105 histidine biosynthetic process.
Probab=32.15 E-value=39 Score=14.94 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=84.1
Q ss_pred EEEECCC-CC-HHH-HCCHHHHHHHHHHCCCCEEEEECC-----------------------------CHH-HHHHHHHH
Q ss_conf 6861388-87-565-226899999999869989999167-----------------------------987-78999999
Q gi|254780215|r 3 IDTHCHL-LL-PDF-DEDRHDVIMRAHQANVLKMIAIAI-----------------------------KVK-DFVPLIKL 49 (262)
Q Consensus 3 iD~H~HL-~~-~~~-~~d~~~~i~~a~~~gv~~~i~~~~-----------------------------~~~-~~~~~~~l 49 (262)
+|.|.|= .+ ..- ...+++++++|.+.|...+..+-- ++. -...+.+|
T Consensus 1 ~D~H~HsG~Fc~Hg~~~~~~~~v~~Ai~~gf~~~cfTEH~PR~~~~~~yp~~~~~~ke~~~~~~~~~~~l~~Y~~~i~~l 80 (301)
T TIGR01856 1 RDSHSHSGPFCAHGSTDTLEEVVQEAIQKGFEEICFTEHAPRIRLPRLYPEEDALDKEAVKVAAMLFESLPEYIEEIQRL 80 (301)
T ss_pred CCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99730035778899988889999999970788122103686200773478767888746678999887689999999999
Q ss_pred HHHCCC----CCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCC-CEECC-------CCCCCCC----------CCCCC
Q ss_conf 985572----33211244544334467889988531001--3332-10044-------6775533----------22111
Q gi|254780215|r 50 CQDYPS----SIFCSVGTHPCHAHEENEVLVDELVCLAS--HPRV-VAIGE-------TGLDRYH----------NAHTI 105 (262)
Q Consensus 50 ~~~~p~----~i~~a~GiHP~~~~~~~~~~~~~l~~l~~--~~~~-~aIGE-------iGLD~~~----------~~~~~ 105 (262)
.++|.+ .+-.-+|+==-+.........+.+..-.+ -+-+ .-|=+ +-+||.. .....
T Consensus 81 k~~Y~~rPdv~~~i~iG~E~~~~~~~~~~~~~~f~~~~~p~~Df~i~SvH~~~g~~~y~~~Dfd~~~f~~~~~~~~~~~e 160 (301)
T TIGR01856 81 KKEYADRPDVKLKIRIGLEVDYIDPEFEEFIKDFLDEYNPILDFVIGSVHFLRGDSSYIPIDFDEEEFKEELVSFEKSLE 160 (301)
T ss_pred HHHHCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEECCCCHHHHHHHHHHHHCCHH
T ss_conf 99848898504678852245201344799999998751882024778877774875401036886788887877724678
Q ss_pred HHHHHHHHHHHHHHHH---CCCCCEE-ECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHH
Q ss_conf 0246789999876642---0442033-00023335799985310003675331121464023
Q gi|254780215|r 106 EEQKVVFLRHIEASRI---TGIPLVI-HSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKL 163 (262)
Q Consensus 106 e~Q~~vF~~ql~lA~e---~~~pv~i-H~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~ 163 (262)
..|++.|+.|.+.... +.+|.+| | +++.+++.+ ...++|-=+|+-+.
T Consensus 161 ~~~~~Y~~~~~~~~~~~LGl~~p~~~GH--------~DL~~~F~~---~~~lvhqksGnCne 211 (301)
T TIGR01856 161 QAFRDYFESVYDSIQADLGLFKPLVIGH--------LDLVKKFAP---LTSLVHQKSGNCNE 211 (301)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEH--------HHHHHHHHH---HCCEEECCCCCCCC
T ss_conf 9999999999999998538668832301--------307866211---11214313677432
No 300
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=32.12 E-value=39 Score=14.94 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=51.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHH-HHHHHHHCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHCCCCCCCEECCCC
Q ss_conf 8999999998699899991679877899-9999985572332112445-4433446788998853100133321004467
Q gi|254780215|r 18 RHDVIMRAHQANVLKMIAIAIKVKDFVP-LIKLCQDYPSSIFCSVGTH-PCHAHEENEVLVDELVCLASHPRVVAIGETG 95 (262)
Q Consensus 18 ~~~~i~~a~~~gv~~~i~~~~~~~~~~~-~~~l~~~~p~~i~~a~GiH-P~~~~~~~~~~~~~l~~l~~~~~~~aIGEiG 95 (262)
...+++.+...+. .+...|.+.+..+. ...+.++||+.. .+|.| |.+-.+..+..++.+.. ..+.++-|| .
T Consensus 37 ~~~ll~~~~~~~~-~v~llG~~~~~~~~~~~~l~~~yP~l~--i~g~~~g~f~~~e~~~i~~~I~~--~~~div~vg-l- 109 (172)
T pfam03808 37 IPALLERAAERGK-RVFLLGGKPGVLEKAAARLRARYPGLR--IVGTHDGYFSPEEEEAIIEAINA--SGPDLLFVG-L- 109 (172)
T ss_pred HHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCE--EEEEECCCCCHHHHHHHHHHHHH--CCCCEEEEE-C-
T ss_conf 9999999986498-389980888999999999998879955--99987999986899999999984--599999995-6-
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHH
Q ss_conf 75533221110246789999876642044203300023335799985
Q gi|254780215|r 96 LDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQ 142 (262)
Q Consensus 96 LD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~ 142 (262)
....|+.+..+ +...++.++ +-|++|. ++.+.
T Consensus 110 --------G~PkQE~~~~~---~~~~~~~~v-~~~vGa~---~d~~a 141 (172)
T pfam03808 110 --------GAPKQEKWIAR---NRARLPVPV-FIGVGGS---FDFLA 141 (172)
T ss_pred --------CCCHHHHHHHH---HHHHCCCCE-EEECCCH---HHHHH
T ss_conf --------98177999999---998779987-9852401---24663
No 301
>PRK13129 consensus
Probab=32.10 E-value=39 Score=14.94 Aligned_cols=68 Identities=12% Similarity=0.118 Sum_probs=31.2
Q ss_pred CCCEECCCCHHHHHHHHCC--C--CEEECCCCCCHHH---HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 3311214640234432103--5--2020233221133---3223333210566717983078667877768875882449
Q gi|254780215|r 152 FVIHCFSSSQKLADICLEL--G--GYISFTGMITFPK---YDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYV 224 (262)
Q Consensus 152 ~i~H~FsG~~~~~~~~l~~--g--~y~S~~g~i~~~~---~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i 224 (262)
+-+=+-+.+.+-++++.+. | |++|..|+ |-.+ ...+.+.++.+- --||-|-. ..-..++|..+
T Consensus 152 I~lvaPtt~~~Ri~~i~~~~~gFiY~vs~~Gv-TG~~~~~~~~~~~~i~~ik-----~~t~~Pv~----vGFGIs~~e~v 221 (267)
T PRK13129 152 ILLVAPTTPAERMKRIAQQSRGFTYLVSVTGV-TGERSQMENRVESLLQQLR-----QVTSKPIA----VGFGISGPEQA 221 (267)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEEEECCCC-CCCCCCCCHHHHHHHHHHH-----HHCCCCEE----EEECCCCHHHH
T ss_conf 89948999689999998168980898734665-6765445088999999999-----83489817----88447999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780215|r 225 VNTAK 229 (262)
Q Consensus 225 ~~~~~ 229 (262)
..+.+
T Consensus 222 ~~~~~ 226 (267)
T PRK13129 222 RQVRE 226 (267)
T ss_pred HHHHH
T ss_conf 99985
No 302
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=31.83 E-value=40 Score=14.91 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=38.7
Q ss_pred CCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC-CCEEEC
Q ss_conf 442033000233357999853100036753311214640234432103-520202
Q gi|254780215|r 123 GIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL-GGYISF 176 (262)
Q Consensus 123 ~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~-g~y~S~ 176 (262)
+.-++..+.+-..|+.+.|++|..... --+|.-+|+.+.++++.+. |+++.-
T Consensus 59 ~v~~v~ISvDP~rDtpe~L~~y~~~~~--~~w~~Ltg~~~~i~~l~~~~gv~~~~ 111 (142)
T cd02968 59 DVQVVFISVDPERDTPEVLKAYAKAFG--PGWIGLTGTPEEIEALAKAFGVYYEK 111 (142)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHCCEEEEE
T ss_conf 579999990888899999999999736--58469989999999999976958997
No 303
>TIGR00250 TIGR00250 conserved hypothetical protein TIGR00250; InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VIIcolicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma urealyticum (Q9PQY7 from SWISSPROT, ). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase . This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC . ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0004518 nuclease activity, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus.
Probab=31.82 E-value=40 Score=14.91 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCCHHH-HHHHHHHCCCCCCCEECCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHCCCCCEEEC-----H
Q ss_conf 1244544334467889-9885310013332100446775533221--110246789999876642044203300-----0
Q gi|254780215|r 60 SVGTHPCHAHEENEVL-VDELVCLASHPRVVAIGETGLDRYHNAH--TIEEQKVVFLRHIEASRITGIPLVIHS-----R 131 (262)
Q Consensus 60 a~GiHP~~~~~~~~~~-~~~l~~l~~~~~~~aIGEiGLD~~~~~~--~~e~Q~~vF~~ql~lA~e~~~pv~iH~-----r 131 (262)
|-||---.+++...++ +..+++++.+-++--| =+||.+.=+.+ ++-.|-+-|.+ .++..|+.||.+|. .
T Consensus 23 A~gi~tik~~~~~~d~Gl~~i~~l~ke~~~d~~-vvGlP~nM~Gt~g~~~~~~~kFA~--r~~~~~~v~v~l~DERL~t~ 99 (133)
T TIGR00250 23 AQGIPTIKAQDGEPDWGLSRIEELLKEWKVDKI-VVGLPLNMDGTVGPLTKRAQKFAK--RLEGRFGVPVELMDERLSTV 99 (133)
T ss_pred ECCCHHHHHCCCCCCCCHHHHHHHHHHCCCCEE-EECCCCCCCCCCCHHHHHHHHHHH--HHHHHHCCCEEEECCCCCHH
T ss_conf 044031121048886217999998731588978-861787878872502688899998--86554066437861761378
Q ss_pred HHHHHHHH
Q ss_conf 23335799
Q gi|254780215|r 132 SADDDMAA 139 (262)
Q Consensus 132 ~a~~~~l~ 139 (262)
.|...+++
T Consensus 100 ~A~~~L~~ 107 (133)
T TIGR00250 100 EAESQLFA 107 (133)
T ss_pred HHHHHHHH
T ss_conf 99998886
No 304
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=31.53 E-value=40 Score=14.88 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHCCCCCEEECHH--HHHHHHHHHH
Q ss_conf 8999987664204420330002--3335799985
Q gi|254780215|r 111 VFLRHIEASRITGIPLVIHSRS--ADDDMAAILQ 142 (262)
Q Consensus 111 vF~~ql~lA~e~~~pv~iH~r~--a~~~~l~iL~ 142 (262)
-|.+-++.+.++++|+++-+-+ ..+..+++++
T Consensus 147 kfa~ave~v~~~~~pv~l~s~dpevmkaaLev~~ 180 (467)
T COG1456 147 KFAEAVEKVAEAGLPVILCSFDPEVMKAALEVVK 180 (467)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 9999999998658967999579999999998761
No 305
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.48 E-value=40 Score=14.87 Aligned_cols=51 Identities=18% Similarity=0.095 Sum_probs=30.0
Q ss_pred HCCHHHHHHHHHHCCCCEEEEECCC------HHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 2268999999998699899991679------87789999999855723321124454
Q gi|254780215|r 15 DEDRHDVIMRAHQANVLKMIAIAIK------VKDFVPLIKLCQDYPSSIFCSVGTHP 65 (262)
Q Consensus 15 ~~d~~~~i~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~~p~~i~~a~GiHP 65 (262)
..|.-+.+....+.|.+.+..+-.+ .....-+.++++...-.+...=||+-
T Consensus 30 ~~dP~~~a~~~~~~Ga~~lhivDLd~a~~g~~~n~~~I~~i~~~~~~pi~vGGGIrs 86 (240)
T PRK13585 30 YGDPVEVAKRWVDAGAKTLHLVDLDGAFEGSRKNADIIEKIVEATDVSIQLGGGIRS 86 (240)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 689999999999879997999989772118944499999999737977899788587
No 306
>pfam02222 ATP-grasp ATP-grasp domain. This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.
Probab=31.30 E-value=14 Score=17.89 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=10.5
Q ss_pred HHHHHHCCCCCEEEC
Q ss_conf 876642044203300
Q gi|254780215|r 116 IEASRITGIPLVIHS 130 (262)
Q Consensus 116 l~lA~e~~~pv~iH~ 130 (262)
.+.+.+++.|++|-.
T Consensus 21 ~~~~~~iGyP~vvKp 35 (171)
T pfam02222 21 IEAGQELGYPCVLKA 35 (171)
T ss_pred HHHHHHCCCCEEEEE
T ss_conf 999997099789996
No 307
>TIGR02865 spore_II_E stage II sporulation protein E; InterPro: IPR014221 This entry contains the stage II sporulation protein E (SpoIIE), which is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation and it has phosphatase activity, located in the C-terminal region, which is required to activate sigma-F. All members of this entry are found in endospore-forming Gram-positive bacteria. A homologous protein, not a member of this entry, is found in the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis..
Probab=31.29 E-value=40 Score=14.85 Aligned_cols=137 Identities=15% Similarity=0.212 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHH-------HHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHH-----HHHCCCCEEEC
Q ss_conf 678999987664204420330002-------333579998531000367533112146402344-----32103520202
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRS-------ADDDMAAILQEEMKKGPFPFVIHCFSSSQKLAD-----ICLELGGYISF 176 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~-------a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~-----~~l~~g~y~S~ 176 (262)
....++.++.. ++.-+.|-+++ ..+|.+-.|+= .++==|+|..+.+| .|+++|--+-.
T Consensus 629 ~~LlEk~l~~G--f~~~~AI~tvNSil~LrF~~~E~FsTlDL--------~~iDL~~g~~~F~KvGavpSFiKRG~~V~v 698 (794)
T TIGR02865 629 VRLLEKFLESG--FDREVAIKTVNSILSLRFSEDEKFSTLDL--------SVIDLYTGQAEFVKVGAVPSFIKRGAKVEV 698 (794)
T ss_pred HHHHHHHHHCC--CCHHHHHHHHHHHHHCCCCCCCHHHHHHH--------HHHCCCCCEEEEEEECCCCCEEEECCEEEE
T ss_conf 99999999707--88768999988997314899840577678--------874477632789996161251666788999
Q ss_pred ----C---CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf ----3---322113332233332105667179830786678777688758824499999999987289989999999999
Q gi|254780215|r 177 ----T---GMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKN 249 (262)
Q Consensus 177 ----~---g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N 249 (262)
| |.+-.=..+--++.+ -|-|=|.+=||+= -+++.|....-.-..++++.+.+-.-.+++|+++.+-++
T Consensus 699 I~~~~LPiG~~~~vd~e~~~~~L--~~GD~ivm~SDGv---LE~l~g~~~~e~k~~W~~~~l~e~~~~~P~E~Ae~~l~~ 773 (794)
T TIGR02865 699 IRSSNLPIGILDEVDVELVRKKL--KNGDLIVMVSDGV---LEALEGEKEVEGKVLWLVRFLKETDTNDPEEIAEYLLEK 773 (794)
T ss_pred EEECCCCCCCCCCCCCCCEEEEC--CCCCEEEEECCCH---HHCCCCCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 86278984654532343001233--7998799812313---330587300116288999996136778958899999999
Q ss_pred HHHHH-HHHHHH
Q ss_conf 99984-256875
Q gi|254780215|r 250 ALKLF-SKISEC 260 (262)
Q Consensus 250 ~~~~f-~~~~~~ 260 (262)
+.+.= |+++|+
T Consensus 774 a~~~~~g~~~DD 785 (794)
T TIGR02865 774 AIELRKGKIKDD 785 (794)
T ss_pred HHHCCCCCEEEC
T ss_conf 986079961112
No 308
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family; InterPro: IPR011875 This entry describes Corynebacterium glutamicum GlgA and closely related proteins in other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related IPR011835 from INTERPRO, family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor ..
Probab=30.88 E-value=26 Score=16.11 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=14.0
Q ss_pred HHHHCCCCCCCCCCCCCCCC
Q ss_conf 99855723321124454433
Q gi|254780215|r 49 LCQDYPSSIFCSVGTHPCHA 68 (262)
Q Consensus 49 l~~~~p~~i~~a~GiHP~~~ 68 (262)
|.++||..||...|+|=.+.
T Consensus 6 LtrEYPP~vYGGAGVHv~~L 25 (416)
T TIGR02149 6 LTREYPPEVYGGAGVHVEEL 25 (416)
T ss_pred CCCCCCCCCCCCCCHHHHHH
T ss_conf 24678788678874118889
No 309
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=30.49 E-value=42 Score=14.76 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=34.2
Q ss_pred HHHHHHHHHCCCCCCCCEECCCCH-HHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 999853100036753311214640-23443210352-020233221133322333321056
Q gi|254780215|r 138 AAILQEEMKKGPFPFVIHCFSSSQ-KLADICLELGG-YISFTGMITFPKYDALRAIARGIP 196 (262)
Q Consensus 138 l~iL~~~~~~~~~~~i~H~FsG~~-~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~iP 196 (262)
++.|++.....+.+.++|.=||.. +++++++++|. .|-|+..+...=.+.+++.++.=|
T Consensus 192 ~~~l~~i~~~~~vPLVLHGgSG~~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~~~~l~~~~ 252 (285)
T PRK07709 192 FAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQ 252 (285)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999840599879649999999999999985985999882889999999999997397
No 310
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=30.33 E-value=42 Score=14.75 Aligned_cols=111 Identities=17% Similarity=0.264 Sum_probs=56.6
Q ss_pred EECCCCCHHH-HCCHHHHHHHHHHCCCCEEEEE----C------CCHHHHHHH---HHHHHH---CC----------CCC
Q ss_conf 6138887565-2268999999998699899991----6------798778999---999985---57----------233
Q gi|254780215|r 5 THCHLLLPDF-DEDRHDVIMRAHQANVLKMIAI----A------IKVKDFVPL---IKLCQD---YP----------SSI 57 (262)
Q Consensus 5 ~H~HL~~~~~-~~d~~~~i~~a~~~gv~~~i~~----~------~~~~~~~~~---~~l~~~---~p----------~~i 57 (262)
+=.||..-.. -+...++|++....||..+++- . ....++.-+ .++.++ .+ +..
T Consensus 76 ~v~HLtC~~~t~~e~~~~L~~y~~~Gi~~ilALRGD~p~~~~~~~~~~~~~yA~eLV~~Ir~~~g~~GIy~~~E~V~~~F 155 (302)
T TIGR00676 76 TVPHLTCIGSTREEIEEILREYRELGIRNILALRGDPPDETDFEPAPGGFKYASELVEFIRSEHGFGGIYLDGEDVTEDF 155 (302)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 30000023689899999999998748867987437688888656588766776899999983689985564776457655
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 2112445443344678899885310013332100446775533221110246789999876642044
Q gi|254780215|r 58 FCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGI 124 (262)
Q Consensus 58 ~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~ 124 (262)
...++..|.. |....+....+..|.. +| +.|=|+--++-=.+ -+.|.++.+.++..|-
T Consensus 156 ~I~VAaYPE~-Hpea~~~~~D~~nLK~--KV----dAGAd~aITQlFFd--nd~y~rF~d~c~~aGI 213 (302)
T TIGR00676 156 EIGVAAYPEK-HPEAPNLEEDIENLKR--KV----DAGADYAITQLFFD--NDDYYRFVDRCRAAGI 213 (302)
T ss_pred EEEEEECCCC-CCCCCCHHHHHHHHHH--HH----HHCCCCEEEEEECC--HHHHHHHHHHHHHCCC
T ss_conf 0556425887-8888888999999999--88----62778033111115--6678889999998789
No 311
>PRK13114 consensus
Probab=30.29 E-value=42 Score=14.74 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=11.5
Q ss_pred CEECCCCHHHHHHHHCC--C--CEEECCC
Q ss_conf 11214640234432103--5--2020233
Q gi|254780215|r 154 IHCFSSSQKLADICLEL--G--GYISFTG 178 (262)
Q Consensus 154 ~H~FsG~~~~~~~~l~~--g--~y~S~~g 178 (262)
+=+=+.+.+-+++..+. | ||+|..|
T Consensus 149 liaPtt~~~Ri~~i~~~a~gFiY~vs~~G 177 (266)
T PRK13114 149 LATPTTDAARLPAVLEGASGFLYYVSVAG 177 (266)
T ss_pred EECCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 75699979999999973899589984455
No 312
>pfam00390 malic Malic enzyme, N-terminal domain.
Probab=30.17 E-value=42 Score=14.73 Aligned_cols=38 Identities=16% Similarity=-0.034 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHCC-CCCEEECHH-HHHHHHHHHHHH
Q ss_conf 24678999987664204-420330002-333579998531
Q gi|254780215|r 107 EQKVVFLRHIEASRITG-IPLVIHSRS-ADDDMAAILQEE 144 (262)
Q Consensus 107 ~Q~~vF~~ql~lA~e~~-~pv~iH~r~-a~~~~l~iL~~~ 144 (262)
.--++++++++.+++.= --..||.-+ +-...+++|++|
T Consensus 142 eYd~f~deFv~av~~~~~p~~liqfEDF~~~nA~~lLerY 181 (182)
T pfam00390 142 EYDEFVDEFVEAVKALFPPFGGIQFEDFGAPNAFEILERY 181 (182)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHC
T ss_conf 9999999999999987099848986428954289999851
No 313
>pfam02219 MTHFR Methylenetetrahydrofolate reductase. This family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from bacteria and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The structure for this domain is known to be a TIM barrel.
Probab=30.13 E-value=42 Score=14.72 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=9.7
Q ss_pred HHHHHHHHHCCCCEEEEECCC
Q ss_conf 999999998699899991679
Q gi|254780215|r 19 HDVIMRAHQANVLKMIAIAIK 39 (262)
Q Consensus 19 ~~~i~~a~~~gv~~~i~~~~~ 39 (262)
...+..+...||..+++..-|
T Consensus 87 ~~~L~~~~~~GI~niLaLrGD 107 (286)
T pfam02219 87 DDALEDAKALGIRNILALRGD 107 (286)
T ss_pred HHHHHHHHHCCCCEEEEECCC
T ss_conf 999999998598858761488
No 314
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=29.99 E-value=42 Score=14.71 Aligned_cols=51 Identities=6% Similarity=0.115 Sum_probs=29.4
Q ss_pred HHCCHHHHHHHHHHCCCCEEEEECCC------HHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 52268999999998699899991679------8778999999985572332112445
Q gi|254780215|r 14 FDEDRHDVIMRAHQANVLKMIAIAIK------VKDFVPLIKLCQDYPSSIFCSVGTH 64 (262)
Q Consensus 14 ~~~d~~~~i~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~~p~~i~~a~GiH 64 (262)
+..|..+++....+.|++.+..+-.+ ...+.-+.++++...-.+...=||.
T Consensus 27 ~~gdP~~~a~~~~~~g~d~i~ivDLda~~~~~~~n~~~i~~i~~~~~~pi~vgGGIr 83 (229)
T pfam00977 27 YAGDPVELAKRYEEEGADELHFVDLDAAKEGRPVNLDLIEEIAEEVFIPVQVGGGIR 83 (229)
T ss_pred ECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCEE
T ss_conf 779999999999987999899996866302681069999999986698789964561
No 315
>TIGR00963 secA preprotein translocase, SecA subunit; InterPro: IPR000185 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . SecA is a cytoplasmic protein of 800 to 960 amino acid residues. Homologs of secA are also encoded in the chloroplast genome of some algae as well as in the nuclear genome of plants . It could be involved in the intraorganellar protein transport into thylakoids.; GO: 0005524 ATP binding, 0006605 protein targeting, 0006886 intracellular protein transport.
Probab=29.96 E-value=16 Score=17.46 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999842568
Q gi|254780215|r 241 DLMEETTKNALKLFSKIS 258 (262)
Q Consensus 241 ei~~~~~~N~~~~f~~~~ 258 (262)
.+|.+|++|+-|+|+|++
T Consensus 357 T~AtITyQNfFrlY~KLs 374 (904)
T TIGR00963 357 TLATITYQNFFRLYEKLS 374 (904)
T ss_pred EEEEHHHHHHHHHHHHHC
T ss_conf 244044576765426544
No 316
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=29.95 E-value=43 Score=14.70 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEE--C-----HHHHHHHHHHHHHHHHC--------CCCCCCCEECCCC
Q ss_conf 678999987664204420330--0-----02333579998531000--------3675331121464
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIH--S-----RSADDDMAAILQEEMKK--------GPFPFVIHCFSSS 160 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH--~-----r~a~~~~l~iL~~~~~~--------~~~~~i~H~FsG~ 160 (262)
+++.+...+...++++|-.|| | -+.++-+++.|+..... .-..+=||+|.|+
T Consensus 212 reIi~~L~~a~e~LglPH~lHvH~nnLG~PGN~~ttleT~~~~eg~~~~r~q~~HltHiQFhsYgg~ 278 (556)
T TIGR03121 212 REIIKGLARANEELGLPHSIHVHCNNLGVPGNYETTLDTLDAAEGVKPNRNQVLHLTHVQFHSYGGT 278 (556)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCC
T ss_conf 9999999999985489963577126689986168999999986599754444057645742014788
No 317
>pfam02007 MtrH Tetrahydromethanopterin S-methyltransferase MtrH subunit. The enzyme tetrahydromethanopterin S-methyltransferase EC:2.1.1.86 is composed of eight subunits. The enzyme is a membrane- associated enzyme complex which catalyses an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide.
Probab=29.83 E-value=43 Score=14.69 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=62.3
Q ss_pred HCCCCEEEE-ECCCHHHHHHHHHHHHHCCC---CCCCCCC---CCC-CCCCCCC---HHHHHHHHHHCCCCCCCEECCCC
Q ss_conf 869989999-16798778999999985572---3321124---454-4334467---88998853100133321004467
Q gi|254780215|r 27 QANVLKMIA-IAIKVKDFVPLIKLCQDYPS---SIFCSVG---THP-CHAHEEN---EVLVDELVCLASHPRVVAIGETG 95 (262)
Q Consensus 27 ~~gv~~~i~-~~~~~~~~~~~~~l~~~~p~---~i~~a~G---iHP-~~~~~~~---~~~~~~l~~l~~~~~~~aIGEiG 95 (262)
.-|...++. ++.+++...+.++......+ .+-.+.| +|- .++.+.. ......+..-..+.++-|+-|-+
T Consensus 62 ~TGnp~~~qI~g~t~EA~~kYidfv~~i~d~PfliDSt~~~ar~aa~kya~E~GladR~IYNSIn~s~~~~EieaL~esd 141 (296)
T pfam02007 62 ETGNPYLVQIFGETPEAIIRYIDFVADVTDAPFLIDSTEGEVRLAAAKYATEVGLADRAIYNSINASIEDSEIEALAESD 141 (296)
T ss_pred HHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 55896577764489899999888763257787564388678889998665551446778875167667889999998569
Q ss_pred CC------CCCCCCCCHHHHHHHHH--------HHHHHHHCCC--CCEEEC---HH-----HHHHHHHHHHHHHHCCCCC
Q ss_conf 75------53322111024678999--------9876642044--203300---02-----3335799985310003675
Q gi|254780215|r 96 LD------RYHNAHTIEEQKVVFLR--------HIEASRITGI--PLVIHS---RS-----ADDDMAAILQEEMKKGPFP 151 (262)
Q Consensus 96 LD------~~~~~~~~e~Q~~vF~~--------ql~lA~e~~~--pv~iH~---r~-----a~~~~l~iL~~~~~~~~~~ 151 (262)
++ |.....+.+--.++++. .|++|.+.+. |++=-. .+ +.+.++. .++. ...|.+
T Consensus 142 i~aaIiLafnp~dpsv~gr~~~l~~gg~~~~~gll~~a~~~GI~~~liD~avtplgsg~g~a~r~~~a-vK~~-~G~P~G 219 (296)
T pfam02007 142 VEAAIVLAFNPMDPSVEGRIQILENGGGTAEKGMLEIAEKCGITKYLIDTAVTPLGSGAGAAVKATIA-VKAK-FGLPVG 219 (296)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHH-HHHH-CCCCCC
T ss_conf 97689986179999722569998705664211079999975996435432135677751699999999-9998-099767
Q ss_pred CCCEECCCCHHHHHHHHCC
Q ss_conf 3311214640234432103
Q gi|254780215|r 152 FVIHCFSSSQKLADICLEL 170 (262)
Q Consensus 152 ~i~H~FsG~~~~~~~~l~~ 170 (262)
+-.|.-....++++++.+.
T Consensus 220 ~g~hN~~saW~wlk~~kk~ 238 (296)
T pfam02007 220 SGIHNAPSAWDWLRKFKKK 238 (296)
T ss_pred CCCCCCCHHHHHHHHHHCC
T ss_conf 6534683076899997213
No 318
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=29.80 E-value=43 Score=14.69 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=11.8
Q ss_pred CEECCCCHHHHHHHHCC--C--CEEECCC
Q ss_conf 11214640234432103--5--2020233
Q gi|254780215|r 154 IHCFSSSQKLADICLEL--G--GYISFTG 178 (262)
Q Consensus 154 ~H~FsG~~~~~~~~l~~--g--~y~S~~g 178 (262)
+=+-+-+.+-+++..+. | |++|..|
T Consensus 145 lvsPtt~~~Ri~~i~~~s~gFiY~vs~~G 173 (258)
T pfam00290 145 LVAPTTSDERLKTISEAASGFVYLVSRAG 173 (258)
T ss_pred EECCCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf 84588819999999960898089985344
No 319
>PRK13753 dihydropteroate synthase; Provisional
Probab=29.76 E-value=43 Score=14.68 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=9.6
Q ss_pred HHHHHHCCCCCE-EECH
Q ss_conf 876642044203-3000
Q gi|254780215|r 116 IEASRITGIPLV-IHSR 131 (262)
Q Consensus 116 l~lA~e~~~pv~-iH~r 131 (262)
++++.+++.|++ .|.+
T Consensus 112 ~~~va~~~~~~vlMH~~ 128 (279)
T PRK13753 112 YPDIAEADCRLVVMHSA 128 (279)
T ss_pred HHHHHHHCCCEEEEECC
T ss_conf 99999719988998268
No 320
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=29.59 E-value=43 Score=14.66 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf 678899885310013332100446775533221110246789999876642044203300
Q gi|254780215|r 71 ENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS 130 (262)
Q Consensus 71 ~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~ 130 (262)
..+..++.+..++.+.++.+|- ||+...-+.+.-+..++.|...|+ +.+++||.+..
T Consensus 35 ~~~~~~~~l~~~i~~~~~~~iv-iG~P~~~~g~~~~~~~~~f~~~l~--~~~~i~v~~~D 91 (99)
T smart00732 35 NKEADAARLKKLIKKYQPDLIV-IGLPLNMNGTASRETEEAFAELLK--ERFNLPVVLVD 91 (99)
T ss_pred CCHHHHHHHHHHHHHHCCCEEE-ECCCCCCCCCCCHHHHHHHHHHHH--HCCCCCEEEEE
T ss_conf 8269999999999984998899-747524899819999999999985--17899889995
No 321
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=29.57 E-value=43 Score=14.66 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=25.4
Q ss_pred HHHHHHHHHCCCCCEEECHHHH----HHHHHHHHHHHHCCCCCCCCEECCCCH--HHHHHHHC
Q ss_conf 9998766420442033000233----357999853100036753311214640--23443210
Q gi|254780215|r 113 LRHIEASRITGIPLVIHSRSAD----DDMAAILQEEMKKGPFPFVIHCFSSSQ--KLADICLE 169 (262)
Q Consensus 113 ~~ql~lA~e~~~pv~iH~r~a~----~~~l~iL~~~~~~~~~~~i~H~FsG~~--~~~~~~l~ 169 (262)
.+--+||++++-.++++|-=.. +.+++-+++.+. ..-+++||-.=.. +....+++
T Consensus 46 krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~g--~lD~lVHsIaFa~k~el~G~~~d 106 (259)
T COG0623 46 KRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKWG--KLDGLVHSIAFAPKEELKGDYLD 106 (259)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHC--CCCEEEEEECCCCHHHHCCCEEC
T ss_conf 99999876416776996677876899999999987607--66479987314886781786000
No 322
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=29.23 E-value=29 Score=15.78 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHH-----HHHHHHHHHHHCCCCCCCCEECCCCH-HHHHHHHCCCCEEECCCCCCH
Q ss_conf 678999987664204420330002333-----57999853100036753311214640-234432103520202332211
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHSRSADD-----DMAAILQEEMKKGPFPFVIHCFSSSQ-KLADICLELGGYISFTGMITF 182 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~r~a~~-----~~l~iL~~~~~~~~~~~i~H~FsG~~-~~~~~~l~~g~y~S~~g~i~~ 182 (262)
++.-+.|+++|-|.+.|-+|-.-+..+ ..+|+. ++.. +++-.|.+.|-. -.+.+.|.-|-||=.|+.-.+
T Consensus 148 ~D~HeaQVQfALERGiPA~igvlgT~rLPyPs~sFDm~--HCsR--C~IpW~~~dG~~LlEvdRvLRPGGYfV~S~pPv~ 223 (506)
T pfam03141 148 KDVHEAQVQFALERGVPAMLGVLGTRRLPYPSRSFDMA--HCSR--CLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHH--HHCC--CCCCCCCCCCEEEEEEEHCCCCCCEEEECCCCCC
T ss_conf 64118889999971852566564035358875330124--4224--5674104797788654000047866994678655
No 323
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.20 E-value=44 Score=14.62 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=10.2
Q ss_pred ECCCCHHHHHHHHCC--C--CEEECCC
Q ss_conf 214640234432103--5--2020233
Q gi|254780215|r 156 CFSSSQKLADICLEL--G--GYISFTG 178 (262)
Q Consensus 156 ~FsG~~~~~~~~l~~--g--~y~S~~g 178 (262)
+=+-+.+-+++..+. | |++|..|
T Consensus 146 aPtt~~~Ri~~i~~~s~gfiY~vs~~G 172 (256)
T PRK13111 146 APTTTDERLKKIASHASGFVYYVSRAG 172 (256)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999988999999962698599985677
No 324
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235 This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=29.19 E-value=44 Score=14.62 Aligned_cols=134 Identities=14% Similarity=0.143 Sum_probs=81.5
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCC-----------------CCCCCCCCCCCCCCC-HHHHHHHHHHCCCC
Q ss_conf 998699899991679877899999998557233-----------------211244544334467-88998853100133
Q gi|254780215|r 25 AHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSI-----------------FCSVGTHPCHAHEEN-EVLVDELVCLASHP 86 (262)
Q Consensus 25 a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i-----------------~~a~GiHP~~~~~~~-~~~~~~l~~l~~~~ 86 (262)
|.+-||..+..-|-....+.-++.|++. .++| ++-+||+=.++...+ .+. ++..+. +
T Consensus 68 ALEGGvaal~~ASG~AA~~~Ailnla~A-GDnIVsS~~LYGGTynLF~~TlkrlGIevrFvd~dd~pe~---~~k~id-~ 142 (434)
T TIGR01326 68 ALEGGVAALAVASGQAAITYAILNLAQA-GDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDGDDDPEE---LEKAID-E 142 (434)
T ss_pred HHCCCEEEHHHCHHHHHHHHHHHHHHHC-CCCEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCCCHHH---HHHHCC-C
T ss_conf 4215500021011579999999999726-9826980644422578999955544814887278888789---997606-6
Q ss_pred CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCCEEE-CHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHH
Q ss_conf 321004467755332211102467899998766420--4420330-0023335799985310003675331121464023
Q gi|254780215|r 87 RVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRIT--GIPLVIH-SRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKL 163 (262)
Q Consensus 87 ~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~--~~pv~iH-~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~ 163 (262)
+..|| |...-.....-.-=|++.-++|++. +-|+++= +..+-+=+++=+ ..+ .-+|+||
T Consensus 143 nTKAv------f~EtIgNP~~~v~Die~~a~~Ah~~PhgvPliVDNT~atpGYL~rPi----~hG-ADIVvhS------- 204 (434)
T TIGR01326 143 NTKAV------FAETIGNPALNVPDIEAVAEVAHAHPHGVPLIVDNTFATPGYLCRPI----DHG-ADIVVHS------- 204 (434)
T ss_pred CCEEE------EEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHH----HCC-CCEEEEE-------
T ss_conf 75189------84012387767678589999998678983488747868764100645----649-8679961-------
Q ss_pred HHHHHCCCCEEECCCCCCH
Q ss_conf 4432103520202332211
Q gi|254780215|r 164 ADICLELGGYISFTGMITF 182 (262)
Q Consensus 164 ~~~~l~~g~y~S~~g~i~~ 182 (262)
+.||+. |-=.|++|+|..
T Consensus 205 aTK~iG-GHG~aiGG~ivD 222 (434)
T TIGR01326 205 ATKYIG-GHGTAIGGVIVD 222 (434)
T ss_pred ECCCCC-CCEEEEEEEEEE
T ss_conf 001012-631465047882
No 325
>PRK13117 consensus
Probab=29.09 E-value=44 Score=14.61 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=41.6
Q ss_pred HHHHHHHHHHCCCC-CEEECH--HHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC--C--CEEECCCCCCH--
Q ss_conf 99998766420442-033000--233357999853100036753311214640234432103--5--20202332211--
Q gi|254780215|r 112 FLRHIEASRITGIP-LVIHSR--SADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL--G--GYISFTGMITF-- 182 (262)
Q Consensus 112 F~~ql~lA~e~~~p-v~iH~r--~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~--g--~y~S~~g~i~~-- 182 (262)
++++++-|++.+.- ++|..- ...++..+..+++ +...+-+=.=+.+.+-++++.+. | ||+|..|+---
T Consensus 111 ~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~---gl~~I~lv~Ptt~~~Ri~~i~~~a~GFiY~vs~~GvTG~~~ 187 (268)
T PRK13117 111 IDNFYARCAEAGVDSVLIADVPVEESAPFRQAAKKH---GIAPIFICPPNADDDTLRQIASLGRGYTYLLSRAGVTGAEN 187 (268)
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 999999999769877985799978858999999867---98379984799999999999974798599983677788986
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 3332233332105667179830786678777688758824499999
Q gi|254780215|r 183 PKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTA 228 (262)
Q Consensus 183 ~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~ 228 (262)
.-...+.+.++.+ =-.||-|-.. .-..++|..+..+.
T Consensus 188 ~~~~~~~~~i~~i-----k~~t~~Pv~v----GFGIs~~e~v~~~~ 224 (268)
T PRK13117 188 KAAAPLNHLVEKL-----KEYNAPPPLQ----GFGISEPEQVKAAI 224 (268)
T ss_pred CCCHHHHHHHHHH-----HHCCCCCEEE----EECCCCHHHHHHHH
T ss_conf 6627799999999-----9647998699----83789999999998
No 326
>TIGR02033 D-hydantoinase dihydropyrimidinase; InterPro: IPR011778 This entry represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme ..
Probab=29.08 E-value=44 Score=14.61 Aligned_cols=167 Identities=19% Similarity=0.214 Sum_probs=87.5
Q ss_pred CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCE-EECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHH
Q ss_conf 3210044677553322111024678999987664204-4203-3000233357999853100036753311214640234
Q gi|254780215|r 87 RVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITG-IPLV-IHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLA 164 (262)
Q Consensus 87 ~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~-~pv~-iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~ 164 (262)
+.++-|-+|=-|+.-.-|.+..=+++-|-|.||+--| .||. +|.=.+ +.++.+.+-+.++. ++.-=-+.-.+-.=
T Consensus 201 ~~~a~G~T~P~yHalSRP~e~EaEA~~R~I~~A~~a~n~PLy~vHvS~~--~a~~~i~~AR~~G~-~V~~ETcp~YL~Ld 277 (466)
T TIGR02033 201 RLLAQGKTGPEYHALSRPPELEAEAVARAIKLAALADNAPLYIVHVSTK--DALDEIAEAREKGQ-PVYGETCPQYLLLD 277 (466)
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHCCC-CEEEEEECCCCCCC
T ss_conf 9996478788875334733325779999999999965986589996377--78999999985399-08998606721134
Q ss_pred HHHHC-C----CCEEECCCCCC-HHHH-HHHHHHHHCCCCCCEEEEEC-CCCCCCCC---CC-CCC---CCHH-------
Q ss_conf 43210-3----52020233221-1333-22333321056671798307-86678777---68-875---8824-------
Q gi|254780215|r 165 DICLE-L----GGYISFTGMIT-FPKY-DALRAIARGIPMDRVLVETD-SPYIVPVS---CQ-GKR---NEPA------- 222 (262)
Q Consensus 165 ~~~l~-~----g~y~S~~g~i~-~~~~-~~~~e~v~~iPldriLlETD-sP~l~p~~---~r-~~~---n~P~------- 222 (262)
...++ . |..|=.||.+- .... +.+...++.=-|+ ++=|| +||-+-+. -+ |+. --|-
T Consensus 278 ~~~yd~~p~~~~AKyv~SPPLRP~~~~qd~Lw~~l~~G~Lq--~v~sDHC~F~~~~~Gkl~~~G~dDF~~iPNG~PGvE~ 355 (466)
T TIGR02033 278 DTLYDDKPGFEAAKYVLSPPLRPEKEDQDALWQALSSGALQ--TVSSDHCTFNFAQKGKLKAIGKDDFRKIPNGLPGVEE 355 (466)
T ss_pred HHHHCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCC--EEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 67815877726550121800133876608999987618511--0330336635435614112888764507884586211
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 499999999987289989999999999999842568
Q gi|254780215|r 223 YVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKIS 258 (262)
Q Consensus 223 ~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~~ 258 (262)
-+.-+.+..=+-=.+++|+..+.|..|.-|+||-+.
T Consensus 356 Rm~~lf~~gV~~Gri~~e~FV~~TSt~~AK~F~lyP 391 (466)
T TIGR02033 356 RMELLFDEGVAKGRITLEKFVELTSTNPAKIFNLYP 391 (466)
T ss_pred CHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 147988733265878766798998886688718898
No 327
>PRK06321 replicative DNA helicase; Provisional
Probab=28.68 E-value=45 Score=14.56 Aligned_cols=129 Identities=15% Similarity=0.145 Sum_probs=68.1
Q ss_pred HHHHHHHHHH--HHHHCCCCCEEECHHH--HHHHHHHHHHHHHCCCCCCCCEECCCC--HH-------HHHHHHCCCCEE
Q ss_conf 4678999987--6642044203300023--335799985310003675331121464--02-------344321035202
Q gi|254780215|r 108 QKVVFLRHIE--ASRITGIPLVIHSRSA--DDDMAAILQEEMKKGPFPFVIHCFSSS--QK-------LADICLELGGYI 174 (262)
Q Consensus 108 Q~~vF~~ql~--lA~e~~~pv~iH~r~a--~~~~l~iL~~~~~~~~~~~i~H~FsG~--~~-------~~~~~l~~g~y~ 174 (262)
-+..|.-++. +|.+.+.||.+.+... ..-+.++|........ .-+ -+|. .+ .+.++-++.+|+
T Consensus 238 GKTalalnia~~~a~~~~~~v~~fSLEMs~~ql~~R~ls~~s~i~~-~~i---~~g~l~~~e~~~~~~a~~~l~~~~l~i 313 (472)
T PRK06321 238 GKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVES-KKI---SVGDLSGRDFQRIVSVVNEMQEHTLLI 313 (472)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCC-CCC---CCCCCCHHHHHHHHHHHHHHHHCCEEE
T ss_conf 7799999999999985699469975779999999999874037675-521---047999999999999999985487578
Q ss_pred ECCCCCCHHH-HHHHHHHHHCCCCCCEEEEECCCCCCCCC----CC---CCCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 0233221133-32233332105667179830786678777----68---87588244999999999872899899999
Q gi|254780215|r 175 SFTGMITFPK-YDALRAIARGIPMDRVLVETDSPYIVPVS----CQ---GKRNEPAYVVNTAKALAKEKDVSYEDLME 244 (262)
Q Consensus 175 S~~g~i~~~~-~~~~~e~v~~iPldriLlETDsP~l~p~~----~r---~~~n~P~~i~~~~~~iA~i~~~~~eei~~ 244 (262)
-=++.++-.. ..+.|.+-+..+++-+++ | |+--.. .+ .+..+-+.|..-+..+|+-.++++--+++
T Consensus 314 dd~~~~ti~~i~~~~r~~k~~~~l~~vvI--D--YlqL~~~~~~~~~~~~r~~~i~~isr~lK~lAkel~vpvi~LsQ 387 (472)
T PRK06321 314 DDQPGLKITDLRARARRMKESYDIQFLII--D--YLQLLSGSGTLRNSESRQTEISEISRMLKNLARELNIPILCLSQ 387 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEE--E--EHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 67999989999999999987389987999--7--27741677777778889999999999999999997997999722
No 328
>COG3394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.57 E-value=45 Score=14.55 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=37.8
Q ss_pred HCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 2268999999998699899991679877899999998557233211244544334
Q gi|254780215|r 15 DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAH 69 (262)
Q Consensus 15 ~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~ 69 (262)
..-...-|-.+.+-||..--..-++...+..+.+++|++|. ..+|+|=....
T Consensus 15 s~G~nyGIiea~~~GvvtsTt~M~n~pa~~hAv~l~k~~p~---l~IGlHl~LT~ 66 (257)
T COG3394 15 SKGVNYGIIEAHRTGVVTSTTLMVNMPAIDHAVALSKKLPA---LKIGLHLNLTL 66 (257)
T ss_pred CCCCCHHHHHHHHCCCEECEEECCCCCCCHHHHHHHHHCCC---CCEEEEEEECC
T ss_conf 65520558889867943120230588653779998765888---75111478603
No 329
>TIGR02701 shell_carb_anhy carboxysome shell carbonic anhydrase; InterPro: IPR014074 This entry describes a carboxysome shell protein that proves to be a novel class, designated epsilon, of carbonic anhydrase. It tends to be encoded near genes for RuBisCo and other carboxysome shell proteins..
Probab=28.32 E-value=14 Score=17.85 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=32.4
Q ss_pred CCCCEECCCCHHHHHHHHCCCC---EEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC---------------CCC
Q ss_conf 5331121464023443210352---0202332211333223333210566717983078667---------------877
Q gi|254780215|r 151 PFVIHCFSSSQKLADICLELGG---YISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYI---------------VPV 212 (262)
Q Consensus 151 ~~i~H~FsG~~~~~~~~l~~g~---y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l---------------~p~ 212 (262)
-.|.|...|.+.- -+.|. |||+|-. |+. =++|...=-.-||- +|--+|++ .|.
T Consensus 341 ~YV~~~h~GrYpP----nDiGHaERFI~VG~G--F~E-VQ~RNL~YfahLDT--VEEGa~DvDVGikIF~gLNV~~GLPi 411 (463)
T TIGR02701 341 EYVVRSHGGRYPP----NDIGHAERFISVGDG--FDE-VQLRNLAYFAHLDT--VEEGAPDVDVGIKIFKGLNVSRGLPI 411 (463)
T ss_pred HHHCCCCCCCCCC----CCCCCCCCEEECCCC--CCE-EEEEECEEEEEEEE--EEECCCCCCCCCEEECCCCCCCCCCC
T ss_conf 8853678798882----336746441201676--123-46431102455445--75378322144044434463678883
Q ss_pred C----CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7----688758824499999999987
Q gi|254780215|r 213 S----CQGKRNEPAYVVNTAKALAKE 234 (262)
Q Consensus 213 ~----~r~~~n~P~~i~~~~~~iA~i 234 (262)
| |+-..+-|..=.+++.+.-++
T Consensus 412 Pv~vhf~Yd~rVPGSReRav~~a~Rv 437 (463)
T TIGR02701 412 PVAVHFDYDGRVPGSRERAVEKAKRV 437 (463)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 44898741877888466899999999
No 330
>pfam03102 NeuB NeuB family. NeuB is the prokaryotic N-acetylneuraminic acid (Neu5Ac) synthase. It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesize the 9-phosphate form, Neu5Ac-9-P, and utilize ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.
Probab=27.88 E-value=46 Score=14.47 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=31.6
Q ss_pred HHHHHHCCCCCEEECHHH-HHHH---HHHHHHHHHCCCCCCCCEECCCCH---HH-----HHHHHC-CCCEEECCC
Q ss_conf 876642044203300023-3357---999853100036753311214640---23-----443210-352020233
Q gi|254780215|r 116 IEASRITGIPLVIHSRSA-DDDM---AAILQEEMKKGPFPFVIHCFSSSQ---KL-----ADICLE-LGGYISFTG 178 (262)
Q Consensus 116 l~lA~e~~~pv~iH~r~a-~~~~---l~iL~~~~~~~~~~~i~H~FsG~~---~~-----~~~~l~-~g~y~S~~g 178 (262)
|+-..+.++|++|=+=.+ ..|+ +++++... ...-+++||.|.=+ +. ++.+-+ .++-+|||.
T Consensus 106 i~~i~k~~kpiiiSTG~s~~~eI~~~i~~~~~~~--~~~i~llhCvS~YPt~~~~~nL~~I~~lk~~f~~~iG~Sd 179 (240)
T pfam03102 106 LRYIAKTGKPVILSTGMATLEEIEEAVETLREAG--NEDITLLHCTSEYPAPFEDVNLRAIPTLKEAFGVPVGYSD 179 (240)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCC--CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 9999973996899579888999999999999634--5677686658889997466009998899986799688479
No 331
>TIGR00294 TIGR00294 conserved hypothetical protein TIGR00294; InterPro: IPR003801 This entry describes proteins of unknown function..
Probab=27.85 E-value=46 Score=14.47 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=54.2
Q ss_pred CCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-----CCCCCCCCHHHHHH
Q ss_conf 3311214640234432103520202332211333223333210566717983078667877-----76887588244999
Q gi|254780215|r 152 FVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPV-----SCQGKRNEPAYVVN 226 (262)
Q Consensus 152 ~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~-----~~r~~~n~P~~i~~ 226 (262)
.=.|-|+- .|+-+...||-+++...++- +..+|+.+.+.--...-+-|.||.... ..-|-..-|+.-..
T Consensus 92 l~~h~ya~---~aev~m~s~~i~~~~SP~~~---~~tqE~~kim~~a~~~~~~~~PWi~~~k~~g~Ev~G~t~cpcaq~~ 165 (323)
T TIGR00294 92 LKKHRYAT---KAEVYMNSDFILSKRSPVTG---QFTQELAKIMGEASGTRDDDFPWIFERKMVGAEVVGITACPCAQEL 165 (323)
T ss_pred HHHHHHHH---HHHHHHCCCEEEECCCCCCC---CHHHHHHHHHCCCEEEEECCCCEEEEEEECCEEECCCEECHHHHHH
T ss_conf 02567777---76423325623311577664---3025555432363476606877689986245003132126167899
Q ss_pred HHH----HHHHHHCCCHHH
Q ss_conf 999----999872899899
Q gi|254780215|r 227 TAK----ALAKEKDVSYED 241 (262)
Q Consensus 227 ~~~----~iA~i~~~~~ee 241 (262)
|.+ .+++ .|+|-+.
T Consensus 166 ~~~~~~~~l~~-~G~~~e~ 183 (323)
T TIGR00294 166 VKEKSQEKLQE-AGFSDET 183 (323)
T ss_pred HHHHHHHHHHH-CCCCHHH
T ss_conf 99986899985-6897212
No 332
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=27.74 E-value=46 Score=14.45 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHCCCCCEEEC
Q ss_conf 789999876642044203300
Q gi|254780215|r 110 VVFLRHIEASRITGIPLVIHS 130 (262)
Q Consensus 110 ~vF~~ql~lA~e~~~pv~iH~ 130 (262)
.-+.+...+|..+++|+..||
T Consensus 273 t~~~kia~lA~a~gv~~~~H~ 293 (352)
T cd03328 273 TGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred HHHHHHHHHHHHCCCEECCCC
T ss_conf 999999999998499045354
No 333
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=27.61 E-value=17 Score=17.35 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=40.1
Q ss_pred HHHHHCCCCCEEEC---HH----HHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC-----CC-EEECCCCC
Q ss_conf 76642044203300---02----33357999853100036753311214640234432103-----52-02023322
Q gi|254780215|r 117 EASRITGIPLVIHS---RS----ADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL-----GG-YISFTGMI 180 (262)
Q Consensus 117 ~lA~e~~~pv~iH~---r~----a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~-----g~-y~S~~g~i 180 (262)
..|...+-|+++=. |+ +---++.+|.+.-+....++++|+|-|+.+.++..++. |. .|++.|..
T Consensus 151 ~~a~~~dapvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~tg~~vlGv~P~~ 227 (486)
T COG1492 151 GVAEIADAPVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDESLLDPGLKWLEELTGVPVLGVLPYL 227 (486)
T ss_pred EEEHHCCCCEEEEEEECCCCEEEEEEEHHEECCHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 22023389889999511564541730212236876760014799963179878874599999986197467565255
No 334
>pfam11220 DUF3015 Protein of unknown function (DUF3015). This bacterial family of proteins has no known function.
Probab=27.45 E-value=47 Score=14.42 Aligned_cols=32 Identities=25% Similarity=0.176 Sum_probs=25.7
Q ss_pred HHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHH
Q ss_conf 999999987289989---99999999999984256
Q gi|254780215|r 226 NTAKALAKEKDVSYE---DLMEETTKNALKLFSKI 257 (262)
Q Consensus 226 ~~~~~iA~i~~~~~e---ei~~~~~~N~~~~f~~~ 257 (262)
+.+..+|++.+++.+ .+...+.+|+.++|..-
T Consensus 84 E~L~tlA~llgv~~~d~~~F~~~lq~NF~~If~s~ 118 (144)
T pfam11220 84 EALTALAVLLGVQPEDRARFNAVTKENFSQIFPSE 118 (144)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 30899999978988789999999999999868765
No 335
>TIGR00014 arsC arsenate reductase; InterPro: IPR006659 This entry describes a distinct clade, including ArsC itself, of the broader family of ArsC and related proteins. This clade is almost completely restricted to the proteobacteria. An anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773 . When expressed in Escherichia coli this ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. The pump is composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate. ; GO: 0008794 arsenate reductase (glutaredoxin) activity, 0006118 electron transport.
Probab=27.26 E-value=47 Score=14.40 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHH
Q ss_conf 446775533221110246789999876642044203300023
Q gi|254780215|r 92 GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSA 133 (262)
Q Consensus 92 GEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a 133 (262)
-|-|||- ...-+ .+..++.++--.=+++|+|||.-+|
T Consensus 65 ~eLgL~~---P~~~d--~~Ll~A~~~HP~LleRPiVv~~~~A 101 (114)
T TIGR00014 65 KELGLDD---PELSD--DELLDALVAHPILLERPIVVAGDKA 101 (114)
T ss_pred CCCCCCC---CCCCH--HHHHHHHHHCHHHHCCCEEECCCCC
T ss_conf 0047898---88897--8999999836465259857659964
No 336
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=27.08 E-value=48 Score=14.38 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=22.2
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 999998699899991679877899999998557233211244544
Q gi|254780215|r 22 IMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPC 66 (262)
Q Consensus 22 i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~ 66 (262)
++.|.+.|| . + +-.+..+.++..+++.+.+..+..++-+.|.
T Consensus 108 l~~A~~~gv-~-i-~vDS~~El~~i~~~a~~~~~~~~i~lRinp~ 149 (398)
T TIGR03099 108 LRRALAAGV-L-I-NVESLRELNRLAALSEALGLRARVAVRVNPD 149 (398)
T ss_pred HHHHHHCEE-E-E-EECCHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 998875605-9-9-6444688999999887659960699861688
No 337
>KOG3484 consensus
Probab=26.98 E-value=18 Score=17.16 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=16.9
Q ss_pred HHHHHCCCCCCEEEEECCCCC
Q ss_conf 333210566717983078667
Q gi|254780215|r 189 RAIARGIPMDRVLVETDSPYI 209 (262)
Q Consensus 189 ~e~v~~iPldriLlETDsP~l 209 (262)
.+++|.+|.+|||.||..--+
T Consensus 26 k~~~K~vPk~rllsE~EWR~l 46 (91)
T KOG3484 26 KEVAKLVPKNRLLSETEWRGL 46 (91)
T ss_pred HHHHHHCCCCCCCCHHHHHHH
T ss_conf 999963872112468888650
No 338
>PRK05595 replicative DNA helicase; Provisional
Probab=26.60 E-value=49 Score=14.32 Aligned_cols=130 Identities=22% Similarity=0.201 Sum_probs=69.6
Q ss_pred HHHHHHHHHH--HHHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEECCCCH--HH-------HHHHHCCCCEE
Q ss_conf 4678999987--664204420330002--33357999853100036753311214640--23-------44321035202
Q gi|254780215|r 108 QKVVFLRHIE--ASRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHCFSSSQ--KL-------ADICLELGGYI 174 (262)
Q Consensus 108 Q~~vF~~ql~--lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~FsG~~--~~-------~~~~l~~g~y~ 174 (262)
-+..|.-++. .|.+.++||.+-+-. +..-+.+++......... +--+|+. +. +.++-++..|+
T Consensus 213 GKTa~alnia~~~a~~~g~~V~~fSlEMs~~ql~~R~ls~~s~i~~~----~i~~g~l~~~~~~~~~~a~~~l~~~~l~i 288 (444)
T PRK05595 213 GKTTFALNIAEYAALREGKSVVIFSLEMSKEQLAYKLLCSEANVDML----RLRTGNLEDKDWENIARASGPLAAAKIYI 288 (444)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 80799999999999866993799958899999999999964698844----23268979999999999999985489705
Q ss_pred ECCCCCCHHH-HHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 0233221133-3223333210566717983078667877----768875882449999999998728998999999
Q gi|254780215|r 175 SFTGMITFPK-YDALRAIARGIPMDRVLVETDSPYIVPV----SCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEE 245 (262)
Q Consensus 175 S~~g~i~~~~-~~~~~e~v~~iPldriLlETDsP~l~p~----~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~ 245 (262)
-=++.++-.. ..+.|.+.+.-+++-+++ | |+--. ..+.+..+-+.|..-+..+|+-.++++--+++.
T Consensus 289 ~d~~~~ti~~i~~~~r~~~~~~~~~liii--D--YlqLi~~~~~~~~r~~ev~~isr~LK~lAkel~ipvi~lsQL 360 (444)
T PRK05595 289 DDTAGVSVMEMRSKCRRLKIEHGIDLILI--D--YLQLMSGGKSSESRQQEVSEISRSIKALAKEMECPVIALSQL 360 (444)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEE--E--HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 48999648999999999998739998998--2--376357898888899999999999999999969979997026
No 339
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=26.58 E-value=49 Score=14.32 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHCC---CCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEC
Q ss_conf 26899999999869---989999167987789999999855723321124454433446788998853100133321004
Q gi|254780215|r 16 EDRHDVIMRAHQAN---VLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIG 92 (262)
Q Consensus 16 ~d~~~~i~~a~~~g---v~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIG 92 (262)
..+.+++++.+..| -+-+|-+|-.-+++-.+..+.++|.-+. .++-+.|.+. ++.-...+..+ +.
T Consensus 43 ~~l~~l~~~~r~~~~~~YDCiv~vSGGkDS~y~~~~l~~~~gl~p-L~vt~d~~~~---t~~g~~Ni~~l--------~~ 110 (343)
T TIGR03573 43 KELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKKKLGLNP-LLVTVDPGWN---TELGVKNLNNL--------IK 110 (343)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCE-EEEEECCCCC---CHHHHHHHHHH--------HH
T ss_conf 999999999971489988689868877289999999999829925-9998359877---98999999999--------98
Q ss_pred CCCCCCCCCCC----CCHHH---------------HHHHHHHHHHHHHCCCCCEEECHHH
Q ss_conf 46775533221----11024---------------6789999876642044203300023
Q gi|254780215|r 93 ETGLDRYHNAH----TIEEQ---------------KVVFLRHIEASRITGIPLVIHSRSA 133 (262)
Q Consensus 93 EiGLD~~~~~~----~~e~Q---------------~~vF~~ql~lA~e~~~pv~iH~r~a 133 (262)
..|+|...-.. -++.| ..+|..-+++|.+++.|+++---..
T Consensus 111 ~lgvD~i~~~~n~~~~k~l~k~~~~~~gd~~~~~~~~i~~~~~~iA~k~~IplIi~Gen~ 170 (343)
T TIGR03573 111 KLGFDLHTITINPETFRKLQRAYFKKVGDPEWPQDHAIFASVYQVALKFNIPLIIWGENI 170 (343)
T ss_pred HCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 369985874699999999999999866894699999999999999998199989975670
No 340
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=26.36 E-value=49 Score=14.29 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=29.2
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCC----CCCCCCCCCCCCC
Q ss_conf 6861388875652268999999998699899991679877899999998557----2332112445443
Q gi|254780215|r 3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYP----SSIFCSVGTHPCH 67 (262)
Q Consensus 3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p----~~i~~a~GiHP~~ 67 (262)
+|+|+|++.--....+-+.|.+..+..-..+|.....- -....++.+..+ +.-.-.+|+||..
T Consensus 61 VDthvh~s~cm~~k~LL~FIk~k~~~~pd~vV~~~dgk--~~TL~evfe~l~l~~~dltvd~L~v~a~~ 127 (496)
T cd01319 61 VDTHVHHSACMNQKHLLRFIKKKLRTEPDEVVIFRDGK--KLTLKEVFDSLKLTAYDLSVDTLDVHADR 127 (496)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC--EEEHHHHHHHCCCCHHHCCCCCCCCCCCC
T ss_conf 21454230278989999999999972999489868997--50099999863998443721001514376
No 341
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=26.28 E-value=49 Score=14.32 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=9.3
Q ss_pred CCCCEECCCCHHH--HHHHHCCCC
Q ss_conf 5331121464023--443210352
Q gi|254780215|r 151 PFVIHCFSSSQKL--ADICLELGG 172 (262)
Q Consensus 151 ~~i~H~FsG~~~~--~~~~l~~g~ 172 (262)
++++||-+|.-+. ++.+.++||
T Consensus 68 ~ivv~C~~G~RS~~aa~~L~~~G~ 91 (109)
T cd01533 68 PIVVNCAGRTRSIIGAQSLINAGL 91 (109)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 599988998499999999998699
No 342
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.21 E-value=49 Score=14.28 Aligned_cols=11 Identities=0% Similarity=0.314 Sum_probs=5.3
Q ss_pred EEEECCCHHHH
Q ss_conf 99916798778
Q gi|254780215|r 33 MIAIAIKVKDF 43 (262)
Q Consensus 33 ~i~~~~~~~~~ 43 (262)
++.+|...+.|
T Consensus 70 iv~~G~~lE~~ 80 (287)
T cd01137 70 ILYNGLNLEPW 80 (287)
T ss_pred EEECCCCCHHH
T ss_conf 99858874178
No 343
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=26.15 E-value=49 Score=14.27 Aligned_cols=154 Identities=17% Similarity=0.216 Sum_probs=87.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC----CCHHHHHHHHHHHHH
Q ss_conf 8999999985572332112445443344678899885310013332100446775533221----110246789999876
Q gi|254780215|r 43 FVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAH----TIEEQKVVFLRHIEA 118 (262)
Q Consensus 43 ~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~----~~e~Q~~vF~~ql~l 118 (262)
.....+-+-..++.|-.++|--|-.+ .++.++.|.++.+.- -+ .=|.||--..+.+ .+..--..|..-+.-
T Consensus 102 Lre~ye~aL~~~~VVGLsIgTRPDCl---pd~VldlL~e~~~r~-~v-WvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r 176 (312)
T COG1242 102 LREMYEQALSEAGVVGLSIGTRPDCL---PDDVLDLLAEYNKRY-EV-WVELGLQTAHDKTLKRINRGHDFACYVDAVKR 176 (312)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCC---CHHHHHHHHHHHHHE-EE-EEEECCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999997275880477505899888---189999999986445-78-87745305558999987624544999999999
Q ss_pred HHHCCCCCEEECHH-----HHHHHH---HHHHHHHHCCCCCC-CCEECCCCHHHHHHHHCCCCE-EECCCCCCHHHHHHH
Q ss_conf 64204420330002-----333579---99853100036753-311214640234432103520-202332211333223
Q gi|254780215|r 119 SRITGIPLVIHSRS-----ADDDMA---AILQEEMKKGPFPF-VIHCFSSSQKLADICLELGGY-ISFTGMITFPKYDAL 188 (262)
Q Consensus 119 A~e~~~pv~iH~r~-----a~~~~l---~iL~~~~~~~~~~~-i~H~FsG~~~~~~~~l~~g~y-~S~~g~i~~~~~~~~ 188 (262)
+++.|.-|.-|.-. ..++++ +++......+ .+. .+|--.|+ .+++.+-+-.+. .|...- -..+
T Consensus 177 ~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~G-IKlH~LhvvkgT-~m~k~Y~~G~l~~ls~eeY-----v~~~ 249 (312)
T COG1242 177 LRKRGIKVCTHLINGLPGETRDEMLETAKIVAELGVDG-IKLHPLHVVKGT-PMEKMYEKGRLKFLSLEEY-----VELV 249 (312)
T ss_pred HHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCE-EEEEEEEEECCC-HHHHHHHCCCCEECCHHHH-----HHHH
T ss_conf 99749749888840798888899999999998668753-888878886387-5999997188655459999-----9999
Q ss_pred HHHHHCCCCCCEE--EEECCCC
Q ss_conf 3332105667179--8307866
Q gi|254780215|r 189 RAIARGIPMDRVL--VETDSPY 208 (262)
Q Consensus 189 ~e~v~~iPldriL--lETDsP~ 208 (262)
.+.++.+|.+-+. +--|+|-
T Consensus 250 ~d~le~lpp~vviHRitgd~pr 271 (312)
T COG1242 250 CDQLEHLPPEVVIHRITGDAPR 271 (312)
T ss_pred HHHHHHCCCCEEEEEECCCCCC
T ss_conf 9999748932699970378985
No 344
>COG1590 Uncharacterized conserved protein [Function unknown]
Probab=26.09 E-value=50 Score=14.26 Aligned_cols=96 Identities=20% Similarity=0.223 Sum_probs=57.9
Q ss_pred CCCCE-EECHHHHHHHHHHHHHHHHC----CCCCCCCEECCCCHHHHHHHHCCCCEEEC--CCCCCHHHHHHHHHHHHCC
Q ss_conf 44203-30002333579998531000----36753311214640234432103520202--3322113332233332105
Q gi|254780215|r 123 GIPLV-IHSRSADDDMAAILQEEMKK----GPFPFVIHCFSSSQKLADICLELGGYISF--TGMITFPKYDALRAIARGI 195 (262)
Q Consensus 123 ~~pv~-iH~r~a~~~~l~iL~~~~~~----~~~~~i~H~FsG~~~~~~~~l~~g~y~S~--~g~i~~~~~~~~~e~v~~i 195 (262)
.+++. -|-+-...++++.|+..... .-.+.|+|-..-+.+.|+++++.+---|| || ++.+
T Consensus 65 s~wl~K~H~~~~~~ev~ealk~~~~~~iwl~~~ppIlHV~~r~~e~A~~L~~~a~~~GFK~Sg-------------I~si 131 (208)
T COG1590 65 SRWLGKWHRPISLDEVLEALKKAREGYIWLKVQPPILHVAARDLEAAKKLLNIARSCGFKHSG-------------IKSI 131 (208)
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCEEEEEECCHHHHHHHHHHHHHCCCCCCC-------------EEEE
T ss_conf 789898427577889999997365656999832878998847678899999999862975345-------------2674
Q ss_pred CCCCEEEEECCCCCCCCCC--CCCC-CCHHHHHHHHHHH
Q ss_conf 6671798307866787776--8875-8824499999999
Q gi|254780215|r 196 PMDRVLVETDSPYIVPVSC--QGKR-NEPAYVVNTAKAL 231 (262)
Q Consensus 196 PldriLlETDsP~l~p~~~--r~~~-n~P~~i~~~~~~i 231 (262)
-..|+++|-+++.-...|. +|+. -.+.++...++..
T Consensus 132 s~~r~iVEI~~~ermdvpl~e~g~~~v~~eyl~~lv~~~ 170 (208)
T COG1590 132 SQKRVIVEIRGTERMDVPLGEDGKILVDDEYLKFLVEIA 170 (208)
T ss_pred CCCCEEEEECCCCEEEEEECCCCCEEECHHHHHHHHHHH
T ss_conf 377289997465225644057872997689999999999
No 345
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=25.89 E-value=50 Score=14.24 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=44.3
Q ss_pred HCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 22689999999986998999916798778999999985572332--112445443344678899885310
Q gi|254780215|r 15 DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIF--CSVGTHPCHAHEENEVLVDELVCL 82 (262)
Q Consensus 15 ~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~--~a~GiHP~~~~~~~~~~~~~l~~l 82 (262)
+.-++..++||.+-|+..++..+++-..-.+++++.+.--+.+. .-.|+|-....+..++..+.|++.
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~er 82 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKER 82 (186)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEECCHHHHHHHHHC
T ss_conf 9999999998874486159998436578999998442673599998322655688520589999999970
No 346
>pfam03652 UPF0081 Uncharacterized protein family (UPF0081).
Probab=25.88 E-value=50 Score=14.24 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHCCCCCEEEC-HHHHHHHHHHHHH
Q ss_conf 678899885310013332100446775533221--110246789999876642044203300-0233357999853
Q gi|254780215|r 71 ENEVLVDELVCLASHPRVVAIGETGLDRYHNAH--TIEEQKVVFLRHIEASRITGIPLVIHS-RSADDDMAAILQE 143 (262)
Q Consensus 71 ~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~--~~e~Q~~vF~~ql~lA~e~~~pv~iH~-r~a~~~~l~iL~~ 143 (262)
..+..++.+..++.+.++.+| =|||.+.-+.+ +...+.+-|... |...+++||..+. |-.-.+..+.|.+
T Consensus 35 ~~~~~~~~i~~ii~e~~i~~i-VvGlP~~~dG~~~~~~~~v~~f~~~--L~~~~~i~v~~~DEr~TS~~A~~~l~~ 107 (134)
T pfam03652 35 NGKPDLEELAELIKEWQPDGI-VVGLPLNMDGSEGEQTKRVRKFARR--LKKRFGLPVELVDERLTTVEAERILRE 107 (134)
T ss_pred CCHHHHHHHHHHHHHHCCCEE-EEECCCCCCCCCCHHHHHHHHHHHH--HHHHHCCCEEEEECCCCHHHHHHHHHH
T ss_conf 855899999999998399989-9955899998808899999999999--998619986886343279999999997
No 347
>KOG1717 consensus
Probab=25.29 E-value=45 Score=14.54 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEECCCCHH
Q ss_conf 33579998531000367533112146402
Q gi|254780215|r 134 DDDMAAILQEEMKKGPFPFVIHCFSSSQK 162 (262)
Q Consensus 134 ~~~~l~iL~~~~~~~~~~~i~H~FsG~~~ 162 (262)
+.|.+.++.+.+.+ ..++++||+.|=..
T Consensus 237 fpEAIsfIdeArsk-~cgvLVHClaGISR 264 (343)
T KOG1717 237 FPEAISFIDEARSK-NCGVLVHCLAGISR 264 (343)
T ss_pred HHHHHHHHHHHHCC-CCCEEEEEECCCCH
T ss_conf 28889998876415-77678765014540
No 348
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=25.27 E-value=51 Score=14.16 Aligned_cols=116 Identities=14% Similarity=0.170 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEC
Q ss_conf 2689999999986998999916798---7789999999855723321124454433446788998853100133321004
Q gi|254780215|r 16 EDRHDVIMRAHQANVLKMIAIAIKV---KDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIG 92 (262)
Q Consensus 16 ~d~~~~i~~a~~~gv~~~i~~~~~~---~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIG 92 (262)
+....+|+++...|+..++..|-+| .|+..+.+.+++.+ ++.++ -. +..-.+++..+.|.+.- -..+.
T Consensus 50 ~e~~~~id~l~~~Gv~~v~~tGGEPllr~D~~ei~~~a~~~G--~~~~l--~T-NG~lit~~~a~~L~~~g--l~~v~-- 120 (375)
T PRK05301 50 AEWIRVLREARALGVLQLHFSGGEPLLRKDLEELVAHARRLG--LYTNL--IT-SGVGLTEARLAALKAAG--LDHIQ-- 120 (375)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCC--CEEEE--EE-CCCCCCHHHHHHHHHHC--CCEEE--
T ss_conf 999999999998699889961865245668999999999769--75899--60-67455799999998509--98899--
Q ss_pred CCCCCCCC-CCCCCHHH-HHHHH---HHHHHHHHCCCCCEEEC---HHHHHHHHHHH
Q ss_conf 46775533-22111024-67899---99876642044203300---02333579998
Q gi|254780215|r 93 ETGLDRYH-NAHTIEEQ-KVVFL---RHIEASRITGIPLVIHS---RSADDDMAAIL 141 (262)
Q Consensus 93 EiGLD~~~-~~~~~e~Q-~~vF~---~ql~lA~e~~~pv~iH~---r~a~~~~l~iL 141 (262)
|-||-.. ...+.-.. ...|+ +.++.+++.+.|+.|.+ |.-.+++-+++
T Consensus 121 -vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~i~~ti~r~N~~~l~~i~ 176 (375)
T PRK05301 121 -LSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYPLTLNAVIHRHNIDQIPRII 176 (375)
T ss_pred -EECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHH
T ss_conf -95677987787776378862999999999999749816999872305688899999
No 349
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type; InterPro: IPR004721 Dihydroorotase belongs to MEROPS peptidase family M38 (clan MJ), where it is classified as a non-peptidase homologue. DHOase catalyses the third step in the de novo biosynthesis of pyrimidine, the conversion of ureidosuccinic acid (N-carbamoyl-L-aspartate) into dihydroorotate. Dihydroorotase binds a zinc ion which is required for its catalytic activity . In bacteria, DHOase is a dimer of identical chains of about 400 amino-acid residues (gene pyrC). In the metazoa, DHOase is part of a large multi-functional protein known as 'rudimentary' in Drosophila melanogaster and CAD in mammals and which catalyzes the first three steps of pyrimidine biosynthesis . The DHOase domain is located in the central part of this polyprotein. In yeast, DHOase is encoded by a monofunctional protein (gene URA4). However, a defective DHOase domain is found in a multifunctional protein (gene URA2) that catalyzes the first two steps of pyrimidine biosynthesis. The comparison of DHOase sequences from various sources shows that there are two highly conserved regions. The first located in the N-terminal extremity contains two histidine residues suggested to be involved in binding the zinc ion. The second is found in the C-terminal part. Members of this family of proteins are predicted to adopt a TIM barrel fold . This family represents the homodimeric form of dihydroorotase 3.5.2.3 from EC. It is found in bacteria, plants and fungi; URA4 of yeast is a member of this group of sequences. ; GO: 0004151 dihydroorotase activity, 0019856 pyrimidine base biosynthetic process.
Probab=25.27 E-value=51 Score=14.16 Aligned_cols=232 Identities=17% Similarity=0.151 Sum_probs=111.2
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEE-EEECCCH--HHHHHHHHHHHHCCCCCCCC-CCCCC----CCCCCCCHH
Q ss_conf 6861388875652268999999998699899-9916798--77899999998557233211-24454----433446788
Q gi|254780215|r 3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKM-IAIAIKV--KDFVPLIKLCQDYPSSIFCS-VGTHP----CHAHEENEV 74 (262)
Q Consensus 3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~-i~~~~~~--~~~~~~~~l~~~~p~~i~~a-~GiHP----~~~~~~~~~ 74 (262)
+|.|.|+-+ ..-+..|+=...+.|+... |++.-.+ .+..+++++.++.-+ ..++ --.-| +...+-+.
T Consensus 8 ~D~HlHvRe---ga~lk~V~P~~~~~Gfs~A~iMPNL~pP~~~~~~~~~Y~~~il~-~~p~G~~f~pLMslYL~d~l~p- 82 (364)
T TIGR00856 8 DDWHLHVRE---GAMLKAVLPYTSEGGFSRAIIMPNLKPPVTTVDRAIEYRERILK-AVPAGGDFTPLMSLYLTDDLTP- 82 (364)
T ss_pred CCEEEECCC---HHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCEEEEEECCCCCH-
T ss_conf 750653470---23552147731136514899778887774787889999999998-5558898562146641689898-
Q ss_pred HHHHHHHHCCCCCCCEECCCCCCCCCCC-------CCCHHHHHHHHHHHHHHHHCCCCCEEECHH-----HHH-------
Q ss_conf 9988531001333210044677553322-------111024678999987664204420330002-----333-------
Q gi|254780215|r 75 LVDELVCLASHPRVVAIGETGLDRYHNA-------HTIEEQKVVFLRHIEASRITGIPLVIHSRS-----ADD------- 135 (262)
Q Consensus 75 ~~~~l~~l~~~~~~~aIGEiGLD~~~~~-------~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~-----a~~------- 135 (262)
++|.+-.+..-+.|+ =+|... ..-+...+.+..-|+-+.+.|+|+.||.-. +.+
T Consensus 83 --~el~~A~~~~~v~~~-----K~YPaG~TTNs~~Gv~~~~~~~~~~vL~~m~~~~l~L~~HgE~t~vhdgdkePI~~ld 155 (364)
T TIGR00856 83 --EELEEAKEKHAVRAV-----KLYPAGATTNSAAGVTDLLIEAILPVLEAMQKVGLPLLLHGEVTSVHDGDKEPIDILD 155 (364)
T ss_pred --HHHHHHHHCCCEEEE-----EECCCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHC
T ss_conf --899989754964899-----7258886205111687134678999999887629836631677765567887532103
Q ss_pred ---HHHH-HHHHHHHC-CCCCCCC-EECCCCHHHHHHHHCC-----------CCE---------E--------ECCCCC-
Q ss_conf ---5799-98531000-3675331-1214640234432103-----------520---------2--------023322-
Q gi|254780215|r 136 ---DMAA-ILQEEMKK-GPFPFVI-HCFSSSQKLADICLEL-----------GGY---------I--------SFTGMI- 180 (262)
Q Consensus 136 ---~~l~-iL~~~~~~-~~~~~i~-H~FsG~~~~~~~~l~~-----------g~y---------~--------S~~g~i- 180 (262)
-+++ +|+....+ +..|+|+ |+= -+.+=++++- -.| | |++|..
T Consensus 156 ~E~~f~~~~L~~L~~~fP~LkiilEH~t---~~~ai~~i~~~n~~vkkatdvk~aATlT~~HL~~~~d~l~~Gg~~Ph~f 232 (364)
T TIGR00856 156 REELFIEKVLEPLREKFPKLKIILEHIT---TEDAIKLIEDINNRVKKATDVKLAATLTPHHLLFTRDDLLGGGVNPHLF 232 (364)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECC---CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 5467689998999862776418998529---8899999986400010121011310310778873078882598575011
Q ss_pred CH---H--H-HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC----------CCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 11---3--3-3223333210566717983078667877768875----------88244999999999872899899999
Q gi|254780215|r 181 TF---P--K-YDALRAIARGIPMDRVLVETDSPYIVPVSCQGKR----------NEPAYVVNTAKALAKEKDVSYEDLME 244 (262)
Q Consensus 181 ~~---~--~-~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~----------n~P~~i~~~~~~iA~i~~~~~eei~~ 244 (262)
|. | + .+.+.+++- =.-.|+.+=||| +|.+...|. |.|..++..++.- | ..=++|.+..
T Consensus 233 CkP~~K~~~d~~~L~~~a~-sg~P~~flGsDS---APH~~~~K~s~~G~CAG~ysa~~al~~~A~~F-E-~~NAL~~L~A 306 (364)
T TIGR00856 233 CKPILKRKKDQKALLKLAV-SGKPKFFLGSDS---APHARSKKESACGGCAGVYSAPIALPAYAEVF-E-EVNALENLEA 306 (364)
T ss_pred CCCCCCCHHHHHHHHHHHH-HCCCCEEECCCC---CCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHH-H-HHCCHHHCCE
T ss_conf 6652468566899999987-179825526787---64212066444684610102778999999998-6-4060531463
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999842
Q gi|254780215|r 245 ETTKNALKLFS 255 (262)
Q Consensus 245 ~~~~N~~~~f~ 255 (262)
=+..|...||+
T Consensus 307 F~S~~g~~fY~ 317 (364)
T TIGR00856 307 FVSDNGPSFYG 317 (364)
T ss_pred EEEECCCCCCC
T ss_conf 56522641025
No 350
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=24.93 E-value=52 Score=14.12 Aligned_cols=140 Identities=9% Similarity=-0.017 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 68999999998699899991679-------8778999999985-572332112445443344678899885310013332
Q gi|254780215|r 17 DRHDVIMRAHQANVLKMIAIAIK-------VKDFVPLIKLCQD-YPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRV 88 (262)
Q Consensus 17 d~~~~i~~a~~~gv~~~i~~~~~-------~~~~~~~~~l~~~-~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~ 88 (262)
-+...++...+.|+..++..|++ .++..++.+.+.+ -.+.+-.-.|+- . .+.+..+ +.+.+.+-.+
T Consensus 23 ~l~~~v~~li~~Gv~gi~v~GstGE~~~Ls~eEr~~v~~~~v~~~~grvpvi~gvg-~----~t~~ai~-la~~A~~~Ga 96 (296)
T PRK03620 23 AYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVEACAGRVPVIAGAG-G----GTAQAIE-YAQAAERAGA 96 (296)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEECCC-C----CHHHHHH-HHHHHHHCCC
T ss_conf 99999999997799989968423134348999999999999998389735982577-5----3799999-9999998299
Q ss_pred CEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH---HHHHHHHHHHHHCCCCCCCCEECCCCHHHHH
Q ss_conf 1004467755332211102467899998766420442033000233---3579998531000367533112146402344
Q gi|254780215|r 89 VAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD---DDMAAILQEEMKKGPFPFVIHCFSSSQKLAD 165 (262)
Q Consensus 89 ~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~---~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~ 165 (262)
-||= +-=.||.. ..|..+++..-++|...++|+++.-|... .+++.-|.+. .+...+|= --+|+...+.
T Consensus 97 dai~-v~pPyy~~----~~~~~l~~~~~~ia~a~~lPi~lYn~~~~~~~~~~l~~L~~~--~pnivgiK-dss~d~~~~~ 168 (296)
T PRK03620 97 DGIL-LLPPYLTE----APQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAER--CPNLIGFK-DGVGDIELMV 168 (296)
T ss_pred CEEE-ECCCCCCC----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH--CCCEEEEE-ECCCCHHHHH
T ss_conf 9899-66986789----999999999999998318997751788877699999999972--89889999-5868899999
Q ss_pred HHHCC
Q ss_conf 32103
Q gi|254780215|r 166 ICLEL 170 (262)
Q Consensus 166 ~~l~~ 170 (262)
+++..
T Consensus 169 ~~~~~ 173 (296)
T PRK03620 169 RITRA 173 (296)
T ss_pred HHHHH
T ss_conf 99997
No 351
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=24.61 E-value=53 Score=14.08 Aligned_cols=39 Identities=8% Similarity=-0.079 Sum_probs=17.8
Q ss_pred HHCCCCEEEEECCCHHHHHH-HHHHHHHCCCCCCCCCCCC
Q ss_conf 98699899991679877899-9999985572332112445
Q gi|254780215|r 26 HQANVLKMIAIAIKVKDFVP-LIKLCQDYPSSIFCSVGTH 64 (262)
Q Consensus 26 ~~~gv~~~i~~~~~~~~~~~-~~~l~~~~p~~i~~a~GiH 64 (262)
++.-+++++..|-.|-=+.. ...+.++.-+++-..+|+|
T Consensus 60 R~~ll~gVVitGGEptlQ~~eL~d~~~~v~~nlGf~vkLd 99 (220)
T TIGR02495 60 RQGLLDGVVITGGEPTLQAGELGDFLREVRENLGFEVKLD 99 (220)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 1342105787287532367778999999998659278560
No 352
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=24.55 E-value=53 Score=14.08 Aligned_cols=11 Identities=0% Similarity=0.099 Sum_probs=4.7
Q ss_pred CCHHHHHHHHC
Q ss_conf 64023443210
Q gi|254780215|r 159 SSQKLADICLE 169 (262)
Q Consensus 159 G~~~~~~~~l~ 169 (262)
.+.+.++.+++
T Consensus 117 T~~~~l~~~l~ 127 (220)
T PRK08883 117 TPLAHLEYIMD 127 (220)
T ss_pred CCHHHHHHHHH
T ss_conf 98799999997
No 353
>KOG2368 consensus
Probab=24.50 E-value=37 Score=15.08 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEE-CCCC------HHHHHHHHCCCCE-EE
Q ss_conf 11024678999987664204420330002333579998531000367533112-1464------0234432103520-20
Q gi|254780215|r 104 TIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHC-FSSS------QKLADICLELGGY-IS 175 (262)
Q Consensus 104 ~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~-FsG~------~~~~~~~l~~g~y-~S 175 (262)
+.|.-..-|+.-+..|.+.|.|+- + | ..+++-| |.|. .+..+++.++||| +|
T Consensus 128 tiees~~rf~~v~kaA~~~ni~vR----G-----------Y-----VScvvGCPyeG~v~P~kVa~V~k~ly~mGCyEiS 187 (316)
T KOG2368 128 TIEESLKRFMEVLKAAQEHNIRVR----G-----------Y-----VSCVVGCPYEGAVQPSKVAEVVKKLYEMGCYEIS 187 (316)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCC----E-----------E-----EEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 489999999999999997497500----3-----------7-----8888658766874889999999999847867973
Q ss_pred CCCCCCH---HH-HHHHHHHHHCCCCCCEEEEE
Q ss_conf 2332211---33-32233332105667179830
Q gi|254780215|r 176 FTGMITF---PK-YDALRAIARGIPMDRVLVET 204 (262)
Q Consensus 176 ~~g~i~~---~~-~~~~~e~v~~iPldriLlET 204 (262)
.+-.|-- .. .+-+..+.+.+|.+.|-+--
T Consensus 188 LGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~ 220 (316)
T KOG2368 188 LGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHC 220 (316)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 266104689505899999998747878841042
No 354
>PRK13133 consensus
Probab=24.46 E-value=53 Score=14.07 Aligned_cols=13 Identities=8% Similarity=0.046 Sum_probs=5.8
Q ss_pred CCCHHHHHHHHCC
Q ss_conf 4640234432103
Q gi|254780215|r 158 SSSQKLADICLEL 170 (262)
Q Consensus 158 sG~~~~~~~~l~~ 170 (262)
+.+.+-++...+.
T Consensus 159 tt~~eRi~~i~~~ 171 (267)
T PRK13133 159 VTPPERIEFIDSL 171 (267)
T ss_pred CCCHHHHHHHHHC
T ss_conf 9999999999842
No 355
>PRK13119 consensus
Probab=24.39 E-value=53 Score=14.06 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=6.7
Q ss_pred ECCCCHHHHHHHHCC
Q ss_conf 214640234432103
Q gi|254780215|r 156 CFSSSQKLADICLEL 170 (262)
Q Consensus 156 ~FsG~~~~~~~~l~~ 170 (262)
+=+.+.+-+++..+.
T Consensus 153 aPtt~~~Ri~~i~~~ 167 (261)
T PRK13119 153 APTTTEDRIKTIAEL 167 (261)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 799989999999972
No 356
>PRK10859 putative transglycosylase; Provisional
Probab=24.33 E-value=53 Score=14.05 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=6.7
Q ss_pred HHHHHHHCCCCEEEE
Q ss_conf 999999869989999
Q gi|254780215|r 21 VIMRAHQANVLKMIA 35 (262)
Q Consensus 21 ~i~~a~~~gv~~~i~ 35 (262)
-+++-++.|+-.++.
T Consensus 35 ~L~~I~~rG~LrV~T 49 (507)
T PRK10859 35 QIAAIQARGELRVST 49 (507)
T ss_pred HHHHHHHCCEEEEEE
T ss_conf 799999789689999
No 357
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=24.31 E-value=53 Score=14.05 Aligned_cols=117 Identities=19% Similarity=0.115 Sum_probs=63.9
Q ss_pred HHHHHHHHHHCCC----CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHH-HHHHHHHHHHHHC
Q ss_conf 8899885310013----3321004467755332211102467899998766420442033000233-3579998531000
Q gi|254780215|r 73 EVLVDELVCLASH----PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD-DDMAAILQEEMKK 147 (262)
Q Consensus 73 ~~~~~~l~~l~~~----~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~-~~~l~iL~~~~~~ 147 (262)
++.++.+.+.+.. ...+++|=+- ....+.|....+-++-|++..+++-|+.|.+..+- ..-+++|.+....
T Consensus 66 ~n~~e~l~~el~~~~~k~~~i~is~~T----Dpyqp~E~~~~ltR~ilei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~ 141 (297)
T COG1533 66 ENLLELLERELRKPGPKRTVIAISSVT----DPYQPIEKEYRLTRKILEILLKYGFPVSIVTKSALVLRDLDLLLELAER 141 (297)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCC----CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHCCC
T ss_conf 569999998875246785599985468----8885647787899999999885399679997774101027899840112
Q ss_pred CCCCCCCEE-----------------CCCCHHHHHHHHCCCC--EEECCCCCCHHHHHHHHHHHH
Q ss_conf 367533112-----------------1464023443210352--020233221133322333321
Q gi|254780215|r 148 GPFPFVIHC-----------------FSSSQKLADICLELGG--YISFTGMITFPKYDALRAIAR 193 (262)
Q Consensus 148 ~~~~~i~H~-----------------FsG~~~~~~~~l~~g~--y~S~~g~i~~~~~~~~~e~v~ 193 (262)
....+-+-- ...-.+.++++.+.|+ ++.++|.+-+.+..++.+++.
T Consensus 142 ~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v~v~PIiP~~~d~e~e~~l~ 206 (297)
T COG1533 142 GKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGLFVAPIIPGLNDEELERILE 206 (297)
T ss_pred CCEEEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 65189999516848889865899969899999999999879848999855307887588999999
No 358
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=24.16 E-value=54 Score=14.03 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=16.9
Q ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 999999869989999167987789999999855
Q gi|254780215|r 21 VIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDY 53 (262)
Q Consensus 21 ~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~ 53 (262)
-++.|.+.|+..+ +-.+..+.+++.+++.+.
T Consensus 89 ~l~~a~~~gv~~i--~~Ds~~El~~i~~~a~~~ 119 (382)
T cd06839 89 ELRRAIEAGIGTI--NVESLEELERIDALAEEH 119 (382)
T ss_pred HHHHHHHCCCCEE--ECCCHHHHHHHHHHHHHC
T ss_conf 9999998399576--438679999999999863
No 359
>pfam07745 Glyco_hydro_53 Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.
Probab=24.15 E-value=54 Score=14.03 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.2
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 223333210566717983078667
Q gi|254780215|r 186 DALRAIARGIPMDRVLVETDSPYI 209 (262)
Q Consensus 186 ~~~~e~v~~iPldriLlETDsP~l 209 (262)
..+.++...+..+-+++||.-||-
T Consensus 219 ~~l~~l~~~y~K~v~VvEtayp~t 242 (332)
T pfam07745 219 TNLKDMASRYGKPVMVVETAYPWT 242 (332)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 999999999789679998168775
No 360
>KOG2792 consensus
Probab=24.02 E-value=40 Score=14.91 Aligned_cols=68 Identities=12% Similarity=0.140 Sum_probs=39.4
Q ss_pred HHHHHHHHHH-HHHHCCCC---CEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHC-CCCEEECCC
Q ss_conf 4678999987-66420442---03300023335799985310003675331121464023443210-352020233
Q gi|254780215|r 108 QKVVFLRHIE-ASRITGIP---LVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLE-LGGYISFTG 178 (262)
Q Consensus 108 Q~~vF~~ql~-lA~e~~~p---v~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~-~g~y~S~~g 178 (262)
|.+-+.+-++ +-.+.+.| |.|-| +-++|..+.+.+|......+ +=.+||+.+++++..+ .-+|||=++
T Consensus 158 ELeKm~~~Vd~i~~~~~~~~~PlFIsv-DPeRD~~~~~~eY~~eF~pk--llGLTGT~eqvk~vak~yRVYfs~gp 230 (280)
T KOG2792 158 ELEKMSAVVDEIEAKPGLPPVPLFISV-DPERDSVEVVAEYVSEFHPK--LLGLTGTTEQVKQVAKKYRVYFSTGP 230 (280)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEE-CCCCCCHHHHHHHHHHCCHH--HHCCCCCHHHHHHHHHHHEEEECCCC
T ss_conf 999999999998525899862259984-76648799999999850866--50566889999999988078614689
No 361
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=23.98 E-value=54 Score=14.01 Aligned_cols=45 Identities=27% Similarity=0.219 Sum_probs=20.4
Q ss_pred HHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCE-EECCCCCCH
Q ss_conf 999853100036753311214640234432103520-202332211
Q gi|254780215|r 138 AAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGY-ISFTGMITF 182 (262)
Q Consensus 138 l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y-~S~~g~i~~ 182 (262)
++++++.......++|.-.==-+++++++.+++|.| +-+++.||.
T Consensus 166 ~~lv~~l~~~~~~pvIaEGri~tPe~a~~a~~~GA~aVVVGsAITr 211 (219)
T cd04729 166 FELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 8999999997599399706989999999999839989998954388
No 362
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=23.88 E-value=54 Score=13.99 Aligned_cols=99 Identities=18% Similarity=0.251 Sum_probs=41.8
Q ss_pred HHCCCCCEEEC-HHHHHHHHHHHHHHHHCCCCCCCCEECCC--CHHHHHHHHCCCCEEECC--CCCCHHHHHHHHHHHHC
Q ss_conf 42044203300-02333579998531000367533112146--402344321035202023--32211333223333210
Q gi|254780215|r 120 RITGIPLVIHS-RSADDDMAAILQEEMKKGPFPFVIHCFSS--SQKLADICLELGGYISFT--GMITFPKYDALRAIARG 194 (262)
Q Consensus 120 ~e~~~pv~iH~-r~a~~~~l~iL~~~~~~~~~~~i~H~FsG--~~~~~~~~l~~g~y~S~~--g~i~~~~~~~~~e~v~~ 194 (262)
+..++|+-+|. +.--...++-+. ..+...+.+|+=+- ..+.++...+.|+..|+. |.- .-..+...+..
T Consensus 54 ~~t~~~~DvHLMv~~P~~~i~~~~---~~g~d~i~~H~E~~~~~~~~i~~ik~~g~k~GlAlnP~T---~~~~l~~~l~~ 127 (201)
T pfam00834 54 PLTELPLDVHLMVEEPDRIIPDFA---EAGADIISFHAEASDHPHRTIQLIKEAGAKAGLVLNPAT---PLDAIEYLLDD 127 (201)
T ss_pred HCCCCCEEEEEEEECHHHHHHHHH---HCCCCEEEECHHHHHCHHHHHHHHHHCCCEEEEEECCCC---CCHHHHHHHHH
T ss_conf 638996389999837766399998---739988997544413799999999864972688856998---60288876742
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 56671798307866787776887588244999999999872
Q gi|254780215|r 195 IPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEK 235 (262)
Q Consensus 195 iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~ 235 (262)
.|.+|+=|=-|- +.|+.- ++.+.+++.++|
T Consensus 128 --iD~VLvMtV~PG-----f~GQ~f----~~~~l~KI~~lr 157 (201)
T pfam00834 128 --LDLVLLMSVNPG-----FGGQSF----IPSVLPKIRKVR 157 (201)
T ss_pred --CCEEEEEEECCC-----CCCCCC----CHHHHHHHHHHH
T ss_conf --798999886689-----887645----677999999999
No 363
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain; InterPro: IPR011947 This entry represents the phosphatase domain of the human RNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3 . This domain is related to domains found in the human NLI interacting factor-like phosphatases. ; GO: 0004721 phosphoprotein phosphatase activity, 0005634 nucleus.
Probab=23.64 E-value=34 Score=15.34 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=21.5
Q ss_pred CCCEECC-CCHHHHHHHHCC----CCEEEC
Q ss_conf 3311214-640234432103----520202
Q gi|254780215|r 152 FVIHCFS-SSQKLADICLEL----GGYISF 176 (262)
Q Consensus 152 ~i~H~Fs-G~~~~~~~~l~~----g~y~S~ 176 (262)
.-+|-|| |+...|++.+++ |.|||=
T Consensus 85 yemhiYTmG~R~YA~~iakliDP~~~yFg~ 114 (170)
T TIGR02250 85 YEMHIYTMGTRAYAQAIAKLIDPDGKYFGD 114 (170)
T ss_pred CEEEEEECCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 056654228867999999860887221488
No 364
>TIGR00734 hisAF_rel hisA/hisF family protein; InterPro: IPR004650 This family of proteins has so far been found in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. Proteins are homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. However, the function of proteins in this group is unknown..
Probab=23.54 E-value=55 Score=13.95 Aligned_cols=151 Identities=14% Similarity=0.082 Sum_probs=65.7
Q ss_pred HCCHHHHHHHHHHCCCCEEEEEC-----CCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCC---------------CCH
Q ss_conf 22689999999986998999916-----798778999999985572332112445-443344---------------678
Q gi|254780215|r 15 DEDRHDVIMRAHQANVLKMIAIA-----IKVKDFVPLIKLCQDYPSSIFCSVGTH-PCHAHE---------------ENE 73 (262)
Q Consensus 15 ~~d~~~~i~~a~~~gv~~~i~~~-----~~~~~~~~~~~l~~~~p~~i~~a~GiH-P~~~~~---------------~~~ 73 (262)
.++..+++.-.++.|=..+-+.- -+=..++-+.++.+..|+.| .=+|+- |..... .+-
T Consensus 35 ss~P~~~ak~~~e~gar~iYiADLd~I~G~GdNf~~~~~~~~~~~e~I-~D~GvrS~EdLE~~~f~l~~~~R~vVaTETl 113 (230)
T TIGR00734 35 SSDPVDVAKALKEIGARSIYIADLDAIVGLGDNFELVKKVDKVVEELI-VDIGVRSREDLETLKFVLEKDDRVVVATETL 113 (230)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHCCHHE-EECCCCCHHHHHHCCCCCCCCCCEEEEECCH
T ss_conf 888789999998638846863410022268854899988632220012-4135568454431036756356368862450
Q ss_pred HHHHHHHHHC-CC--CCCCEECCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCC---CCE-EECHHHHH-HHHHHHH
Q ss_conf 8998853100-13--3321004467755332---21110246789999876642044---203-30002333-5799985
Q gi|254780215|r 74 VLVDELVCLA-SH--PRVVAIGETGLDRYHN---AHTIEEQKVVFLRHIEASRITGI---PLV-IHSRSADD-DMAAILQ 142 (262)
Q Consensus 74 ~~~~~l~~l~-~~--~~~~aIGEiGLD~~~~---~~~~e~Q~~vF~~ql~lA~e~~~---pv~-iH~r~a~~-~~l~iL~ 142 (262)
+..+.+++.. +. .++| +-||+... ...++ ..++.-.++-..|++ -+. ||++++.+ -=.++|+
T Consensus 114 ~~~ell~e~~rnyPPer~V----VSlDfK~~~L~~~~l~---~~leevrd~l~~f~~~GlI~LdI~sVGt~~G~n~ell~ 186 (230)
T TIGR00734 114 DSTELLKEILRNYPPERIV----VSLDFKEKRLDASSLE---ESLEEVRDLLNSFDLDGLIVLDISSVGTSKGVNLELLK 186 (230)
T ss_pred HHHHHHHHHHHCCCCCCEE----EEEEEECCCCCCCCCH---HHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 4678999986158986379----9984005520001304---56888875306631013798336330567787888999
Q ss_pred HHHHCCCCCCCCEECCCCHHHHHHHHCCCCE
Q ss_conf 3100036753311214640234432103520
Q gi|254780215|r 143 EEMKKGPFPFVIHCFSSSQKLADICLELGGY 173 (262)
Q Consensus 143 ~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y 173 (262)
........++++=.==-..|.++...++|+-
T Consensus 187 ~~l~l~e~PV~~GGGi~g~EdlEl~~~mGv~ 217 (230)
T TIGR00734 187 KVLELSERPVILGGGIKGVEDLELLKEMGVS 217 (230)
T ss_pred HHHHHHCCCEEECCCCCCCCHHHHHHHCCCC
T ss_conf 8864424871406873675107888856876
No 365
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II; InterPro: IPR006411 Members of this family are class II examples of the glycolytic enzyme fructose-bisphosphate aldolase (FBA). They represent one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterised proteins. This family is well-conserved and includes characterised FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum.; GO: 0004332 fructose-bisphosphate aldolase activity, 0006096 glycolysis.
Probab=23.25 E-value=33 Score=15.41 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=8.9
Q ss_pred CCCCCCEECCCC-HHHHHHHHCCC
Q ss_conf 675331121464-02344321035
Q gi|254780215|r 149 PFPFVIHCFSSS-QKLADICLELG 171 (262)
Q Consensus 149 ~~~~i~H~FsG~-~~~~~~~l~~g 171 (262)
|.-.|||.=||| .+..++.+++|
T Consensus 265 P~~fVFHGGSGSt~~Ei~ea~~yG 288 (365)
T TIGR01520 265 PLFFVFHGGSGSTKQEIEEALSYG 288 (365)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCC
T ss_conf 744165377577289997653368
No 366
>pfam05706 CDKN3 Cyclin-dependent kinase inhibitor 3 (CDKN3). This family consists of cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner.
Probab=23.19 E-value=51 Score=14.20 Aligned_cols=10 Identities=20% Similarity=0.228 Sum_probs=6.3
Q ss_pred CCCCCEECCC
Q ss_conf 7533112146
Q gi|254780215|r 150 FPFVIHCFSS 159 (262)
Q Consensus 150 ~~~i~H~FsG 159 (262)
.++++||+.|
T Consensus 134 rk~lihc~gg 143 (207)
T pfam05706 134 RKTLIHSVGG 143 (207)
T ss_pred CEEEEEEECC
T ss_conf 8489998446
No 367
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=23.12 E-value=56 Score=13.90 Aligned_cols=61 Identities=23% Similarity=0.389 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHC-CCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE--EECHHHHHHHHHHHHH
Q ss_conf 46788998853100-13332100446775533221110246789999876642044203--3000233357999853
Q gi|254780215|r 70 EENEVLVDELVCLA-SHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLV--IHSRSADDDMAAILQE 143 (262)
Q Consensus 70 ~~~~~~~~~l~~l~-~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~--iH~r~a~~~~l~iL~~ 143 (262)
.++....+-|+.-+ ++|.|+=|||+ ||.++.+ .++ -|.|.|--|+ +|+.+|-+-+=+|+.-
T Consensus 184 ~DT~sF~~ALraALReDPDvILiGE~-----RD~ET~~---~AL-----~AAETGHLV~gTLHTnsA~~ti~RIid~ 247 (350)
T TIGR01420 184 LDTLSFANALRAALREDPDVILIGEM-----RDLETVE---LAL-----TAAETGHLVFGTLHTNSAAKTIERIIDV 247 (350)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECC-----CCHHHHH---HHH-----HHHHHCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 75457999976841028988998255-----6278999---999-----8742131567666642388876777425
No 368
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=22.97 E-value=57 Score=13.88 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=12.5
Q ss_pred CCEECCCCHHHHHHHHCC--C--CEEECCC
Q ss_conf 311214640234432103--5--2020233
Q gi|254780215|r 153 VIHCFSSSQKLADICLEL--G--GYISFTG 178 (262)
Q Consensus 153 i~H~FsG~~~~~~~~l~~--g--~y~S~~g 178 (262)
-+=+-+-+.+-+++..+. | ||+|..|
T Consensus 134 ~lvsPtt~~~ri~~i~~~s~gfiY~vs~~G 163 (242)
T cd04724 134 FLVAPTTPDERIKKIAELASGFIYYVSRTG 163 (242)
T ss_pred EEECCCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf 996898878999999974798499985777
No 369
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea..
Probab=22.83 E-value=48 Score=14.38 Aligned_cols=165 Identities=16% Similarity=0.231 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEC-------CCCCCCCCCCCCCHH--
Q ss_conf 798778999999985572-3321124454433446788998853100133321004-------467755332211102--
Q gi|254780215|r 38 IKVKDFVPLIKLCQDYPS-SIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIG-------ETGLDRYHNAHTIEE-- 107 (262)
Q Consensus 38 ~~~~~~~~~~~l~~~~p~-~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIG-------EiGLD~~~~~~~~e~-- 107 (262)
.++-+-+++++.|++..- =|+|.+| |.++. ..+.+.+....|+-|| .-||=. +.++.
T Consensus 57 esYL~~dkil~~Ak~tGA~AI~PGYG----FLSEN-----A~FA~~C~~aGI~FvGPtpe~ir~fGLKH----tAR~lA~ 123 (1226)
T TIGR02712 57 ESYLDIDKILAIAKKTGAQAIHPGYG----FLSEN-----AAFAEACEAAGIVFVGPTPEQIRKFGLKH----TARELAE 123 (1226)
T ss_pred HHHCCHHHHHHHHHHCCCCEEECCCC----CCCCC-----HHHHHHHHHCCCEEECCCHHHHHHCCCCH----HHHHHHH
T ss_conf 22214789999997558938745887----23578-----77998998479578778706674438325----6899999
Q ss_pred -----------HHHHHHHHHHHHHHCCCCCEEECHHH-----------HH---HHHHHHHHHHHCCCCCCCCEECCCCHH
Q ss_conf -----------46789999876642044203300023-----------33---579998531000367533112146402
Q gi|254780215|r 108 -----------QKVVFLRHIEASRITGIPLVIHSRSA-----------DD---DMAAILQEEMKKGPFPFVIHCFSSSQK 162 (262)
Q Consensus 108 -----------Q~~vF~~ql~lA~e~~~pv~iH~r~a-----------~~---~~l~iL~~~~~~~~~~~i~H~FsG~~~ 162 (262)
=.+..+.=++.|.+.+-||+|=|=.. .. +.++-.|.. +. -.|+-+==
T Consensus 124 ~aGVPL~PGTgLL~sl~eA~~~A~~IGYPVMlKSTAGGGGIGl~~c~~~~eL~~aFe~Vkrl---g~-----~~F~daGV 195 (1226)
T TIGR02712 124 AAGVPLLPGTGLLESLDEALEAAKEIGYPVMLKSTAGGGGIGLQKCDNAAELAEAFETVKRL---GE-----SFFGDAGV 195 (1226)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH---HH-----HCCCCCCE
T ss_conf 66889888515587799999998646995479870787652451118989999999998998---86-----32363514
Q ss_pred HHHHHHCCCCEE-------ECCCCCCH-HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 344321035202-------02332211-3332233332105667179830786678777688758824499999999987
Q gi|254780215|r 163 LADICLELGGYI-------SFTGMITF-PKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKE 234 (262)
Q Consensus 163 ~~~~~l~~g~y~-------S~~g~i~~-~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i 234 (262)
.+++|++.==++ +-+-++.. +|...+|. |+ -+++=||=||-|++. .| ..+...++.|++.
T Consensus 196 FlErfv~~ARHvEVQifGDG~G~v~aLGeRDCSLQR--RN---QKVvEETPAP~LP~~-~R------~~L~~AA~~Lg~~ 263 (1226)
T TIGR02712 196 FLERFVENARHVEVQIFGDGKGKVVALGERDCSLQR--RN---QKVVEETPAPNLPEE-TR------AALLAAAEKLGEA 263 (1226)
T ss_pred EHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCC--CC---CCEEEECCCCCCCHH-HH------HHHHHHHHHHHHH
T ss_conf 340320378428998752697336997116754444--56---655872774686489-99------9999999999997
Q ss_pred H
Q ss_conf 2
Q gi|254780215|r 235 K 235 (262)
Q Consensus 235 ~ 235 (262)
-
T Consensus 264 V 264 (1226)
T TIGR02712 264 V 264 (1226)
T ss_pred H
T ss_conf 1
No 370
>PRK04148 hypothetical protein; Provisional
Probab=22.78 E-value=24 Score=16.31 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHCCCCCEEECHHHH
Q ss_conf 7899998766420442033000233
Q gi|254780215|r 110 VVFLRHIEASRITGIPLVIHSRSAD 134 (262)
Q Consensus 110 ~vF~~ql~lA~e~~~pv~iH~r~a~ 134 (262)
+.....++||++.|-+++|---..+
T Consensus 89 Elq~~il~lakkv~~dliI~PL~~E 113 (135)
T PRK04148 89 DLQPFILELAKKLNCPLYIKPLSGE 113 (135)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 8889999999975998999707888
No 371
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=22.69 E-value=57 Score=13.84 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=4.5
Q ss_pred HHHHHHHHCCCC
Q ss_conf 998766420442
Q gi|254780215|r 114 RHIEASRITGIP 125 (262)
Q Consensus 114 ~ql~lA~e~~~p 125 (262)
+.+++++..++.
T Consensus 160 ~~l~~~~~~~l~ 171 (368)
T cd06840 160 EARDLAKKAGII 171 (368)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999857993
No 372
>KOG2707 consensus
Probab=22.63 E-value=57 Score=13.84 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCCHHHHHHHH-HHCCCCCCCEECCCCCCCC---CCCC-CCHHHHHHHHHHHHHHHHCCCCCE-EECHHHH
Q ss_conf 24454433446788998853-1001333210044677553---3221-110246789999876642044203-3000233
Q gi|254780215|r 61 VGTHPCHAHEENEVLVDELV-CLASHPRVVAIGETGLDRY---HNAH-TIEEQKVVFLRHIEASRITGIPLV-IHSRSAD 134 (262)
Q Consensus 61 ~GiHP~~~~~~~~~~~~~l~-~l~~~~~~~aIGEiGLD~~---~~~~-~~e~Q~~vF~~ql~lA~e~~~pv~-iH~r~a~ 134 (262)
=||+|..++..-...++.+. +.+.. ...+|--||-- +... +.-. ..=...-..+|..++||++ +|--.||
T Consensus 71 GGI~P~~a~~~Hr~ni~~~iqral~a---a~~~p~dldaIAVT~gPGl~lsL-~vGl~fA~glA~~l~kPlipVHHMeAH 146 (405)
T KOG2707 71 GGIIPTVAQLLHRENIPRLIQRALDA---AGLSPKDLDAIAVTRGPGLPLSL-KVGLSFAKGLAVKLQKPLIPVHHMEAH 146 (405)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCEEEEEECCCCCEEEH-HHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 79797489999998788999999997---08994551169996389964315-654899999998635886405577776
Q ss_pred HHHHHHHH
Q ss_conf 35799985
Q gi|254780215|r 135 DDMAAILQ 142 (262)
Q Consensus 135 ~~~l~iL~ 142 (262)
.-...+-.
T Consensus 147 AL~~rl~~ 154 (405)
T KOG2707 147 ALSIRLVD 154 (405)
T ss_pred HHHHHHCC
T ss_conf 78887516
No 373
>PRK08506 replicative DNA helicase; Provisional
Probab=22.58 E-value=58 Score=13.83 Aligned_cols=129 Identities=14% Similarity=0.157 Sum_probs=66.8
Q ss_pred HHHHHHHHHHH-HHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEECCCCHH--HHH-------HHHCCCCEEE
Q ss_conf 46789999876-64204420330002--333579998531000367533112146402--344-------3210352020
Q gi|254780215|r 108 QKVVFLRHIEA-SRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHCFSSSQK--LAD-------ICLELGGYIS 175 (262)
Q Consensus 108 Q~~vF~~ql~l-A~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~--~~~-------~~l~~g~y~S 175 (262)
-+.+|.-++.. |.+.++||.+.|-. +..-+.++|........ .-+ -+|+.+ ..+ ++-++..|+-
T Consensus 205 GKTAfAlniA~~~a~~~~~V~~FSLEMs~~ql~~Rlls~~s~V~~-~~l---r~g~l~~~e~~~~~~a~~~l~~~~l~Id 280 (473)
T PRK08506 205 GKTTLVLNMVLKALNQGKGVAFFSLEMPAEQLMLRMLSAKTSIPL-QNL---RTGDLDDDEWENLSDACDELSQKKLFVY 280 (473)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCC-CCC---CCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 678999999999996599658982247999999999997288783-100---0689999999999999999865988998
Q ss_pred CCCCCCHHH-HHHHHHHHHCCC-CCCEEEEECCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 233221133-322333321056-6717983078667877----76887588244999999999872899899999
Q gi|254780215|r 176 FTGMITFPK-YDALRAIARGIP-MDRVLVETDSPYIVPV----SCQGKRNEPAYVVNTAKALAKEKDVSYEDLME 244 (262)
Q Consensus 176 ~~g~i~~~~-~~~~~e~v~~iP-ldriLlETDsP~l~p~----~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~ 244 (262)
=++.+|-.. ..+.|.+.+..+ ++-+++ | |+--. ..+.+..+-+.|..-+..+|+-.++++--+++
T Consensus 281 D~~~lti~~Ira~~Rr~k~~~~~l~livI--D--YLQLm~~~~~~~~R~~ev~~ISr~LK~lAkEl~vPViaLSQ 351 (473)
T PRK08506 281 DSGYVNIHQVRAQLRKLKSQHPEIGLAVI--D--YLQLMSGSKNFKDRHLQISEISRGLKLLARELDIPIIALSQ 351 (473)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEE--E--HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 89999999999999999997699878996--3--67554688875308899999999999999996997999703
No 374
>COG4826 Serine protease inhibitor [Posttranslational modification, protein turnover, chaperones]
Probab=22.50 E-value=50 Score=14.26 Aligned_cols=10 Identities=0% Similarity=0.135 Sum_probs=4.0
Q ss_pred HHHHHHHCCC
Q ss_conf 2333321056
Q gi|254780215|r 187 ALRAIARGIP 196 (262)
Q Consensus 187 ~~~e~v~~iP 196 (262)
+.+++..++|
T Consensus 283 ~y~elk~~m~ 292 (410)
T COG4826 283 KYTELKSNME 292 (410)
T ss_pred HHHHHHHCCC
T ss_conf 8999874277
No 375
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=22.50 E-value=58 Score=13.82 Aligned_cols=55 Identities=18% Similarity=0.281 Sum_probs=24.8
Q ss_pred HHHHHHHHHHCCCCCEEECHHHHH-HHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHC
Q ss_conf 999987664204420330002333-5799985310003675331121464023443210
Q gi|254780215|r 112 FLRHIEASRITGIPLVIHSRSADD-DMAAILQEEMKKGPFPFVIHCFSSSQKLADICLE 169 (262)
Q Consensus 112 F~~ql~lA~e~~~pv~iH~r~a~~-~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~ 169 (262)
+...++.+.+.+..|.+...+... ....+|++.......++|+|| +.+.+.++++
T Consensus 143 Lq~ll~~~~~~~~~i~~~~~~~~~~~~~~~L~~i~~~~~~~iVld~---~~~~~~~vl~ 198 (324)
T cd06368 143 LQELLDALSPKGIQVTVRRLDDDTDMYRPLLKEIKREKERRIILDC---SPERLKEFLE 198 (324)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHH
T ss_conf 9999986532597799997789863589999999747977999989---8699999999
No 376
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=22.45 E-value=58 Score=13.81 Aligned_cols=48 Identities=6% Similarity=0.039 Sum_probs=24.1
Q ss_pred CHHHHHHHHCCCCEEECCCCCCHHHHHH--HHHHHHCCCCCCEEEEECCCCC
Q ss_conf 4023443210352020233221133322--3333210566717983078667
Q gi|254780215|r 160 SQKLADICLELGGYISFTGMITFPKYDA--LRAIARGIPMDRVLVETDSPYI 209 (262)
Q Consensus 160 ~~~~~~~~l~~g~y~S~~g~i~~~~~~~--~~e~v~~iPldriLlETDsP~l 209 (262)
..-.++++++...=+|+-.+ .....+ .-..+.++-.+.||-+|-+|..
T Consensus 176 ~~~i~E~~i~f~~ElSviva--R~~~G~~~~yP~~en~h~~gil~~s~~Pa~ 225 (377)
T PRK06019 176 GPCILEEFVPFEREVSVIVA--RGRDGEVVFYPLVENVHRNGILRTSIAPAP 225 (377)
T ss_pred CCEEEEEEECCEEEEEEEEE--ECCCCCEEEECCHHCEEECCEEEEEECCCC
T ss_conf 98899965435189999999--848999999444114777775589988999
No 377
>pfam01261 AP_endonuc_2 Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.
Probab=22.45 E-value=58 Score=13.81 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEEC
Q ss_conf 6789999876642044203300
Q gi|254780215|r 109 KVVFLRHIEASRITGIPLVIHS 130 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~~pv~iH~ 130 (262)
.+.|.+-.+.|.+.+..+.++.
T Consensus 102 ~~~l~~~~~~a~~~gi~i~iE~ 123 (201)
T pfam01261 102 AESLNELAELAEEYGVKLALEN 123 (201)
T ss_pred HHHHHHHHHHHHHCCEEEEEEE
T ss_conf 9999999998875573899998
No 378
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=22.45 E-value=58 Score=13.81 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHCC-CCCEEEC
Q ss_conf 678999987664204-4203300
Q gi|254780215|r 109 KVVFLRHIEASRITG-IPLVIHS 130 (262)
Q Consensus 109 ~~vF~~ql~lA~e~~-~pv~iH~ 130 (262)
+.-++..|..|..++ -|+.|.-
T Consensus 451 e~el~~ml~ta~~~~~gP~AiRy 473 (627)
T COG1154 451 EEELRQMLYTALAQDDGPVAIRY 473 (627)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99999999999864788748994
No 379
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=22.21 E-value=58 Score=13.78 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCEEEC-HHHHHHHHHHHHH
Q ss_conf 788998853100133321004467755332211--10246789999876642044203300-0233357999853
Q gi|254780215|r 72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHT--IEEQKVVFLRHIEASRITGIPLVIHS-RSADDDMAAILQE 143 (262)
Q Consensus 72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~--~e~Q~~vF~~ql~lA~e~~~pv~iH~-r~a~~~~l~iL~~ 143 (262)
.+..++.+..++.+.++..| =|||.+.-+... ...+..-|... |...+++||.... |-.-.+.-+.|.+
T Consensus 39 ~~~~~~~l~~ii~e~~i~~i-ViGlP~~~~g~~~~~~~~v~~F~~~--L~~~~~l~v~~~DEr~TS~~A~~~l~~ 110 (141)
T PRK00109 39 GEPDWDALEKLLKEWQPDLL-VVGLPLNMDGTEGPMTERARKFANR--LEGRFGLPVELVDERLTTVEAERMLFE 110 (141)
T ss_pred CHHHHHHHHHHHHHHCCCEE-EEECCCCCCCCCCHHHHHHHHHHHH--HHHHHCCCEEEEECCCCHHHHHHHHHH
T ss_conf 06899999999998399989-9944799998844889999999999--999729987986243279999999997
No 380
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina frisia Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer . The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) . This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=22.19 E-value=59 Score=13.78 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=33.5
Q ss_pred CCCCCCCCCCCCH-HHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 2445443344678-8998853100133321004467755332211102467899998766420442033
Q gi|254780215|r 61 VGTHPCHAHEENE-VLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVI 128 (262)
Q Consensus 61 ~GiHP~~~~~~~~-~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~i 128 (262)
.|=-|..|.--.+ .....+.+-+..|=.| +| ...+.|++++|.-.++++++|+||+=
T Consensus 5 ~i~~~~~A~~~~pG~~v~~MIkkAkrPLLv-~G----------~~l~~~Ek~~E~~~K~iekF~l~vva 62 (170)
T TIGR00315 5 AISGPKEATLVEPGKLVAMMIKKAKRPLLV-VG----------PNLEKDEKLLELVVKFIEKFDLPVVA 62 (170)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHCCCCEEE-EC----------CCCHHCCHHHHHHHHHHHHCCCCEEE
T ss_conf 788755167536884256767762886053-36----------10012121345555556432886474
No 381
>pfam07700 HNOB Heme NO binding. The HNOB (Heme NO Binding) domain, is a predominantly alpha-helical domain and binds heme via a covalent linkage to histidine. The HNOB domain is predicted to function as a heme-dependent sensor for gaseous ligands, and transduce diverse downstream signals, in both bacteria and animals.
Probab=22.09 E-value=59 Score=13.76 Aligned_cols=12 Identities=42% Similarity=0.650 Sum_probs=5.7
Q ss_pred HHHHHHCCCCCE
Q ss_conf 876642044203
Q gi|254780215|r 116 IEASRITGIPLV 127 (262)
Q Consensus 116 l~lA~e~~~pv~ 127 (262)
-.+|+..++|+-
T Consensus 53 ~a~s~~~g~~~~ 64 (171)
T pfam07700 53 AAASKVLGIPAE 64 (171)
T ss_pred HHHHHHHCCCHH
T ss_conf 999999892999
No 382
>pfam00549 Ligase_CoA CoA-ligase. This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilize ATP others use GTP.
Probab=22.06 E-value=59 Score=13.76 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=38.1
Q ss_pred CCCCCCCCC-----C-CHHHHHHHHHHCCCCC---CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH
Q ss_conf 445443344-----6-7889988531001333---210044677553322111024678999987664204420330002
Q gi|254780215|r 62 GTHPCHAHE-----E-NEVLVDELVCLASHPR---VVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS 132 (262)
Q Consensus 62 GiHP~~~~~-----~-~~~~~~~l~~l~~~~~---~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~ 132 (262)
|..|...-+ . .....+.++.+..+|+ ++-+||+|.-. .|.--.-+...++-++..++||+....+
T Consensus 19 G~~~a~~ldiGGd~~~~~~~~e~l~~~~~Dp~tk~Ili~~~~G~g~------~e~~A~~~v~a~~~~~~~~~PvVa~i~G 92 (128)
T pfam00549 19 GGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVLGYGA------CEDPAGGLLKAIKEARARELPVVARVCG 92 (128)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCC------HHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 9983258883799986337999999995788862999998774362------6999999999999846998758999930
Q ss_pred HHHH
Q ss_conf 3335
Q gi|254780215|r 133 ADDD 136 (262)
Q Consensus 133 a~~~ 136 (262)
...+
T Consensus 93 t~a~ 96 (128)
T pfam00549 93 TEAD 96 (128)
T ss_pred CCCC
T ss_conf 2699
No 383
>pfam01799 Fer2_2 [2Fe-2S] binding domain.
Probab=22.02 E-value=59 Score=13.76 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 7588244999999999872899899999999999998
Q gi|254780215|r 217 KRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKL 253 (262)
Q Consensus 217 ~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~ 253 (262)
..+.|.++..+...+.+-.+.+.+++.+.+..|..|-
T Consensus 27 GfCtPG~ims~~~ll~~~~~~~~~~i~~~l~GnlCRC 63 (75)
T pfam01799 27 GYCTPGMVMAATALLERNPDPTEEEIREALSGNLCRC 63 (75)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCC
T ss_conf 8875049999999997289989899999986680307
No 384
>PRK08694 consensus
Probab=21.93 E-value=59 Score=13.74 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=67.1
Q ss_pred HHHHHHHHHH--HHHHCCCCCEEECHHH--HHHHHHHHHHHHHCCCCCCCCEECCCCH---------HHHHHHHCCCCEE
Q ss_conf 4678999987--6642044203300023--3357999853100036753311214640---------2344321035202
Q gi|254780215|r 108 QKVVFLRHIE--ASRITGIPLVIHSRSA--DDDMAAILQEEMKKGPFPFVIHCFSSSQ---------KLADICLELGGYI 174 (262)
Q Consensus 108 Q~~vF~~ql~--lA~e~~~pv~iH~r~a--~~~~l~iL~~~~~~~~~~~i~H~FsG~~---------~~~~~~l~~g~y~ 174 (262)
-+..|.-++. .|.+.++||.+.+... ..-+.+++....... ...+ -+|.. +.+.++-+...|+
T Consensus 230 GKTalalnia~~~a~~~~~~V~~fSLEMs~~~l~~Rlla~~s~v~-~~~i---~~g~l~~~e~~~~~~a~~~l~~~pl~i 305 (468)
T PRK08694 230 GKTAFSINIAEHVAVEGKLPVAVFSMEMGGAQLVMRMLGSVGRLD-QSVL---KTGRLEDEHWGRLNEAVVKLSDAPVYI 305 (468)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCC-HHHC---CCCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 378999999999998479847997788999999999999725986-3211---048999999999999999986299689
Q ss_pred ECCCCCCHH-HHHHHHHHHHCCC--CCCEEEEECCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 023322113-3322333321056--67179830786678777688----7588244999999999872899899999
Q gi|254780215|r 175 SFTGMITFP-KYDALRAIARGIP--MDRVLVETDSPYIVPVSCQG----KRNEPAYVVNTAKALAKEKDVSYEDLME 244 (262)
Q Consensus 175 S~~g~i~~~-~~~~~~e~v~~iP--ldriLlETDsP~l~p~~~r~----~~n~P~~i~~~~~~iA~i~~~~~eei~~ 244 (262)
-=++.++-. -..+.|.+.+... ++-+.+ | |+--....+ +..+-+.|..-+..+|+-.++++--+++
T Consensus 306 dd~~~~t~~~i~a~~r~~~~~~~~kl~~vvI--D--YLqLi~~~~~~~~r~~~i~~isr~LK~lAkel~ipvi~LsQ 378 (468)
T PRK08694 306 DETPGLTALELRARARRLARQFNNKLGLIVI--D--YLQLMAGSGRSDNRASELGEISRSLKALAKELQVPIIALSQ 378 (468)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE--E--HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 7699998879999999999983898738997--3--67541688876559999999999999999997998999632
No 385
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507 This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity.
Probab=21.77 E-value=39 Score=14.98 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=49.0
Q ss_pred CCEECCCCHHHHHHHHCCCCE-EEC--CCCCCHHHHHHHHHHHHCCCCCCEEEEECC-------CCCCCCCCCCCCCCHH
Q ss_conf 311214640234432103520-202--332211333223333210566717983078-------6678777688758824
Q gi|254780215|r 153 VIHCFSSSQKLADICLELGGY-ISF--TGMITFPKYDALRAIARGIPMDRVLVETDS-------PYIVPVSCQGKRNEPA 222 (262)
Q Consensus 153 i~H~FsG~~~~~~~~l~~g~y-~S~--~g~i~~~~~~~~~e~v~~iPldriLlETDs-------P~l~p~~~r~~~n~P~ 222 (262)
|.=| |.+++- .+..|+- =++ ...|+-|...++-=+.|..||+.+-||+=. ==++|.| +=.|.|.
T Consensus 81 VvPC---SmKtLs-aIa~G~a~NLitRAADV~LKErRkLvL~~REtPL~SiHLENmL~L~~~G~IIlPP~P--aFY~rPk 154 (181)
T TIGR00421 81 VVPC---SMKTLS-AIANGYAENLITRAADVALKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPPVP--AFYNRPK 154 (181)
T ss_pred EECC---CHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCC--CCCCCCC
T ss_conf 8648---567899-998511055688897554220542464036788751548999999827925327955--4447898
Q ss_pred ----HHHHHHHHHHHHHCCCHHH
Q ss_conf ----4999999999872899899
Q gi|254780215|r 223 ----YVVNTAKALAKEKDVSYED 241 (262)
Q Consensus 223 ----~i~~~~~~iA~i~~~~~ee 241 (262)
++.+++-.+.++.|+..+.
T Consensus 155 S~~Dl~~~~VgR~LD~lGI~~d~ 177 (181)
T TIGR00421 155 SVEDLIDFIVGRVLDQLGIENDL 177 (181)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 87889867798777762443788
No 386
>TIGR01264 tyr_amTase_E tyrosine aminotransferase; InterPro: IPR005957 This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate. L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate.; GO: 0004838 tyrosine transaminase activity, 0030170 pyridoxal phosphate binding, 0009072 aromatic amino acid family metabolic process.
Probab=21.75 E-value=60 Score=13.72 Aligned_cols=133 Identities=12% Similarity=0.164 Sum_probs=68.0
Q ss_pred EEEECCCHHHHHHHHHHHHH-------CCCCC-C------CCCCCCCCCC---CCCCHHHHHHHHHHCCCC-CCCEECCC
Q ss_conf 99916798778999999985-------57233-2------1124454433---446788998853100133-32100446
Q gi|254780215|r 33 MIAIAIKVKDFVPLIKLCQD-------YPSSI-F------CSVGTHPCHA---HEENEVLVDELVCLASHP-RVVAIGET 94 (262)
Q Consensus 33 ~i~~~~~~~~~~~~~~l~~~-------~p~~i-~------~a~GiHP~~~---~~~~~~~~~~l~~l~~~~-~~~aIGEi 94 (262)
+++.|++-.=-.-+..+|.. .|++. | .-+++|++.. .+.++.++++|+.++.+. ++.-|-==
T Consensus 107 vl~SGCS~Al~~ai~a~Ad~G~nvLVP~PGFplY~Tlc~~~~i~~~~Y~~d~~d~~w~~DL~~l~~LiDd~T~~l~vnNP 186 (415)
T TIGR01264 107 VLCSGCSHALEMAIEALADAGQNVLVPRPGFPLYETLCKALGIEVKLYNLDLPDEDWEIDLKQLESLIDDKTKALIVNNP 186 (415)
T ss_pred EECCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 77167027899999995379780630788872078864014762000025798733566489886312567407888375
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE-----CHHHH---HHHHHHHHHHHHCCCCCCCCEECCCCHHHHHH
Q ss_conf 77553322111024678999987664204420330-----00233---35799985310003675331121464023443
Q gi|254780215|r 95 GLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIH-----SRSAD---DDMAAILQEEMKKGPFPFVIHCFSSSQKLADI 166 (262)
Q Consensus 95 GLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH-----~r~a~---~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~ 166 (262)
| .-..+-.. ++=+++.|.+|.++.+|++== .+-.. .-++.=|.+.- ...+ ++-| . -++|+
T Consensus 187 S---NPcGSvF~--~~Hl~~l~a~A~~~~Lpi~ADEIY~~~VF~GkDPnatF~~lA~L~--s~VP-~~~c-g---G~AKr 254 (415)
T TIGR01264 187 S---NPCGSVFR--REHLEELLALAERLKLPIIADEIYGDMVFKGKDPNATFTPLASLS--SKVP-ILSC-G---GLAKR 254 (415)
T ss_pred C---CCCCCCCC--HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCC--CCCC-EEEE-C---CCCCC
T ss_conf 7---78898878--788999999987538723664202565138867864220202377--9988-6870-7---63200
Q ss_pred HHC----CCCEEECC
Q ss_conf 210----35202023
Q gi|254780215|r 167 CLE----LGGYISFT 177 (262)
Q Consensus 167 ~l~----~g~y~S~~ 177 (262)
|+= +||-+=..
T Consensus 255 ~lVPGWRLGWli~hd 269 (415)
T TIGR01264 255 WLVPGWRLGWLIIHD 269 (415)
T ss_pred CCCCCCCCCCEEEEC
T ss_conf 224761102478887
No 387
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=21.72 E-value=60 Score=13.72 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHHHHHCCC
Q ss_conf 798778999999985572
Q gi|254780215|r 38 IKVKDFVPLIKLCQDYPS 55 (262)
Q Consensus 38 ~~~~~~~~~~~l~~~~p~ 55 (262)
.++-|...++++.+.+++
T Consensus 39 NN~lD~daA~~lv~ef~~ 56 (391)
T PRK07106 39 INLLDALNSWQLVKELKE 56 (391)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 789999999999997565
No 388
>pfam08569 Mo25 Mo25-like. Mo25-like proteins are involved in both polarized growth and cytokinesis. In fission yeast Mo25 is localized alternately to the spindle pole body and to the site cell division in a cell cycle dependent manner.
Probab=21.64 E-value=59 Score=13.76 Aligned_cols=75 Identities=12% Similarity=0.054 Sum_probs=47.1
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32233332105667179830786678777688758824499999999987289989999999999999842568750
Q gi|254780215|r 185 YDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKISECV 261 (262)
Q Consensus 185 ~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~~~~~~ 261 (262)
+.-+||++|.=++-+++++++.=|....-.+...-+ ---......-++.-....-+++-+..|+.+||++.+..+
T Consensus 143 G~mLRecir~e~la~~iL~s~~f~~fF~yv~~~~Fd--iasDAf~TfkelLT~Hk~lvaefl~~Nyd~Ff~~yn~Ll 217 (334)
T pfam08569 143 GDMLRECIKHEALAKIILYSPQFWKFFKYVQLSTFE--IATDAFSTFKDLLTTHKKLVAEFLLNNYDRFFSMFNKLL 217 (334)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 599999997599999996578899999998077126--677889889999970788999999996999999999986
No 389
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=21.33 E-value=61 Score=13.66 Aligned_cols=136 Identities=17% Similarity=0.137 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCC-CHHHHHHHHH----HCCCCCCCEECCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHCCCC-CEE---E
Q ss_conf 124454433446-7889988531----00133321004467755332-211102467899998766420442-033---0
Q gi|254780215|r 60 SVGTHPCHAHEE-NEVLVDELVC----LASHPRVVAIGETGLDRYHN-AHTIEEQKVVFLRHIEASRITGIP-LVI---H 129 (262)
Q Consensus 60 a~GiHP~~~~~~-~~~~~~~l~~----l~~~~~~~aIGEiGLD~~~~-~~~~e~Q~~vF~~ql~lA~e~~~p-v~i---H 129 (262)
.+=+||=+.... .++.++++.+ +...+.+..+.|. ... .+....|-.-+.+-++++.+.++. +-| |
T Consensus 103 ~lv~HpG~~~~~~~e~~l~~i~~~Ln~~~~~~~v~i~~e~----~agegs~~g~~F~~L~eii~~~~~~~~igvCiDtcH 178 (280)
T COG0648 103 LLVFHPGSYLGQGKEEGLNRIAEALNELLEEEGVIILLEN----TAGEGSGKGTQFGELAEIIDLIEEKERIGVCIDTCH 178 (280)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE----ECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECHH
T ss_conf 8997775014788899999999999998501487289877----446667656422419999986336575499987120
Q ss_pred --CHH-------HHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCC-
Q ss_conf --002-------3335799985310003675331121464023443210352020233221133322333321056671-
Q gi|254780215|r 130 --SRS-------ADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDR- 199 (262)
Q Consensus 130 --~r~-------a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldr- 199 (262)
.++ .++++++-+.+..... .--++| |+++..-.-...|+=--++.+ .+-| +.++.+++.-..+-
T Consensus 179 ~~Aagy~~~~~~~~~~vl~~~d~~~G~~-~~~~~H-lndsk~~~G~~kDRH~~ig~G-~ig~---e~l~~~~~d~~~~~i 252 (280)
T COG0648 179 AFAAGYDIITEEDFEKVLNEFDKVLGLE-YLKHIH-LNDSKYPLGSNKDRHENIGEG-YIGF---EALRKILKDFRIDGI 252 (280)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCHH-HHEEEE-ECCCCCCCCCCCCCCCCCCCC-CCCH---HHHHHHHHCCCCCCC
T ss_conf 4435478575788999999999985714-330676-337614366551112356789-9885---899999812120587
Q ss_pred -EEEEEC
Q ss_conf -798307
Q gi|254780215|r 200 -VLVETD 205 (262)
Q Consensus 200 -iLlETD 205 (262)
+.+||=
T Consensus 253 PiIlETP 259 (280)
T COG0648 253 PIILETP 259 (280)
T ss_pred EEEEECC
T ss_conf 4897289
No 390
>PTZ00066 pyruvate kinase; Provisional
Probab=21.22 E-value=61 Score=13.65 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=60.0
Q ss_pred HCCHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHCCC--CCCCE
Q ss_conf 226899999999869989999167-987789999999855723321124454433-44678899885310013--33210
Q gi|254780215|r 15 DEDRHDVIMRAHQANVLKMIAIAI-KVKDFVPLIKLCQDYPSSIFCSVGTHPCHA-HEENEVLVDELVCLASH--PRVVA 90 (262)
Q Consensus 15 ~~d~~~~i~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~-~~~~~~~~~~l~~l~~~--~~~~a 90 (262)
+.|..++++-+.+.|++.+-..-+ +.++...+.++.++... |+.-. .=....-++.|.+.+.. .=.+|
T Consensus 209 ekD~~dil~fa~~~~vD~IalSFVrs~~DV~~~r~~l~~~g~--------~~~IIaKIE~~~av~NldeIi~~sDgIMVA 280 (513)
T PTZ00066 209 EKDKNDILNFAIPMNCDFIALSFIQSADDVRLCRNLLGERGK--------HIKIIPKIENIEGLINFDKILAESDGIMVA 280 (513)
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCC--------CCEEEEEECCHHHHHCHHHHHHHCCEEEEE
T ss_conf 368899999998759999998677998999999999997598--------645899843765565899999858989995
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf 0446775533221110246789999876642044203300
Q gi|254780215|r 91 IGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS 130 (262)
Q Consensus 91 IGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~ 130 (262)
=|..|+..-...- .-.|+ +.+..|.+.+|||++=+
T Consensus 281 RGDLgvEip~e~v-p~~QK----~II~~c~~~gKPVIvAT 315 (513)
T PTZ00066 281 RGDLGMEIPPEKV-FLAQK----LMISKCNLQGKPIITAT 315 (513)
T ss_pred CCCCCCCCCHHHH-HHHHH----HHHHHHHHCCCCEEEEC
T ss_conf 6854242698886-89999----99999997599699974
No 391
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]
Probab=21.21 E-value=61 Score=13.65 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHCCCCCEEECHHHHHHHHHHH
Q ss_conf 8999987664204420330002333579998
Q gi|254780215|r 111 VFLRHIEASRITGIPLVIHSRSADDDMAAIL 141 (262)
Q Consensus 111 vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL 141 (262)
+...++.++++..-|..+-.+++...+-++|
T Consensus 139 ~~~~~l~~lk~~kyP~l~~k~d~~~~~~dLl 169 (473)
T COG4623 139 AHVEDLKLLKETKYPELIWKVDDKLGVEDLL 169 (473)
T ss_pred HHHHHHHHHHHHHCCHHHHHHCCCCCHHHHH
T ss_conf 8889999998731634430202212699999
No 392
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=21.03 E-value=62 Score=13.62 Aligned_cols=46 Identities=4% Similarity=-0.015 Sum_probs=27.3
Q ss_pred ECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC----------CCHHHHHHHHHHHHHCC
Q ss_conf 13888756522689999999986998999916----------79877899999998557
Q gi|254780215|r 6 HCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA----------IKVKDFVPLIKLCQDYP 54 (262)
Q Consensus 6 H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~----------~~~~~~~~~~~l~~~~p 54 (262)
.||++. ..-....+++|.+.|...+-.=. .+.++..+..+.+++++
T Consensus 3 G~HvS~---agg~~~a~~~a~~~g~~~~QiF~~~pr~w~~~~~~~~~~~~f~~~~~~~~ 58 (273)
T smart00518 3 GAHVSA---AGGLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENN 58 (273)
T ss_pred EEEECC---CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 675556---65799999999985998999978898889999999999999999999839
No 393
>PRK13127 consensus
Probab=21.01 E-value=62 Score=13.62 Aligned_cols=104 Identities=11% Similarity=0.044 Sum_probs=42.1
Q ss_pred HHHHHHHHHHCCCC-CEEECH--HHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC--C--CEEECCCCCCHH-
Q ss_conf 99998766420442-033000--233357999853100036753311214640234432103--5--202023322113-
Q gi|254780215|r 112 FLRHIEASRITGIP-LVIHSR--SADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL--G--GYISFTGMITFP- 183 (262)
Q Consensus 112 F~~ql~lA~e~~~p-v~iH~r--~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~--g--~y~S~~g~i~~~- 183 (262)
++++++-|++.+.- +++... ....++.+.++++ +...+-+=.-+.+.+-++++.+. | ||+|..|+---+
T Consensus 104 ~e~F~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~---gi~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~ 180 (262)
T PRK13127 104 VEKFVKKAAEAGVSGLIIPDLPVEEATDLREACKKH---GLDLVFLVAPTTPEERLKRIDEASSGFVYLVSRLGVTGARE 180 (262)
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC---CCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 999999998759976996699978999999999855---83279985899989999999843898189984355568765
Q ss_pred -HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -33223333210566717983078667877768875882449999
Q gi|254780215|r 184 -KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNT 227 (262)
Q Consensus 184 -~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~ 227 (262)
-...+.+.++.+ =--||-|-.. .=..++|..+..+
T Consensus 181 ~~~~~~~~~i~~i-----k~~t~~Pv~v----GFGI~~~e~v~~~ 216 (262)
T PRK13127 181 DVEEATFDLLKRA-----RTTCKNKIAV----GFGISKGEHAEEL 216 (262)
T ss_pred CCHHHHHHHHHHH-----HHCCCCCEEE----EEEECCHHHHHHH
T ss_conf 5528899999999-----9617998489----9334889999999
No 394
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=21.00 E-value=62 Score=13.62 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=40.4
Q ss_pred HHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE--EECHHHHHHHHHHHHH
Q ss_conf 9885310013332100446775533221110246789999876642044203--3000233357999853
Q gi|254780215|r 76 VDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLV--IHSRSADDDMAAILQE 143 (262)
Q Consensus 76 ~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~--iH~r~a~~~~l~iL~~ 143 (262)
+..|.....+..++.|-||| .+|..-..|.+.++-+-+-++|++ ||-+. ...+++-+++
T Consensus 86 ~~~L~~a~~~~dlivIDEIG--------~mEl~s~~F~~~v~~~l~~~~~vl~ti~~~~-~~~~v~~i~~ 146 (168)
T pfam03266 86 LPALRRALEEADLIIIDEIG--------PMELKSPKFREAIEEVLSSNKPVLAVVHRRS-DSPLVERIRR 146 (168)
T ss_pred HHHHHHCCCCCCEEEEECCC--------HHHHHHHHHHHHHHHHHCCCCCEEEEEEECC-CCHHHHHHHC
T ss_conf 99998406689899997631--------4533149999999999669997999997258-9838999741
No 395
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=20.87 E-value=62 Score=13.60 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=37.7
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHHHCCCCCEEECHHH--H-----------H-HHHHHHHHHHHCCCCCCCCEECCCCHHH
Q ss_conf 3322111024-6789999876642044203300023--3-----------3-5799985310003675331121464023
Q gi|254780215|r 99 YHNAHTIEEQ-KVVFLRHIEASRITGIPLVIHSRSA--D-----------D-DMAAILQEEMKKGPFPFVIHCFSSSQKL 163 (262)
Q Consensus 99 ~~~~~~~e~Q-~~vF~~ql~lA~e~~~pv~iH~r~a--~-----------~-~~l~iL~~~~~~~~~~~i~H~FsG~~~~ 163 (262)
+|.......+ .+.-++-.+++++++-|++|+.+-- . + .-+....+.. +.+.++=.=+.+.+.
T Consensus 40 lR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~dlA~~~~AdGVHlGq~D~~~~~ar~~~---~~~~iIG~S~h~~ee 116 (211)
T COG0352 40 LREKDLSDEEYLALAEKLRALCQKYGVPLIINDRVDLALAVGADGVHLGQDDMPLAEARELL---GPGLIIGLSTHDLEE 116 (211)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHCCCCEEEECCCCCCHHHHHHHC---CCCCEEEEECCCHHH
T ss_conf 80289874999999999999999819809966839999767998897087654558899741---999789830499999
Q ss_pred HHHHHCCCC-EEECCCC
Q ss_conf 443210352-0202332
Q gi|254780215|r 164 ADICLELGG-YISFTGM 179 (262)
Q Consensus 164 ~~~~l~~g~-y~S~~g~ 179 (262)
+++..++|. |++|++.
T Consensus 117 a~~A~~~g~DYv~~Gpi 133 (211)
T COG0352 117 ALEAEELGADYVGLGPI 133 (211)
T ss_pred HHHHHHCCCCEEEECCC
T ss_conf 99987639999998886
No 396
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=20.86 E-value=62 Score=13.60 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=11.3
Q ss_pred HHHHHCCCCCEEEC-HHHHHHHHHHHH
Q ss_conf 76642044203300-023335799985
Q gi|254780215|r 117 EASRITGIPLVIHS-RSADDDMAAILQ 142 (262)
Q Consensus 117 ~lA~e~~~pv~iH~-r~a~~~~l~iL~ 142 (262)
+|++..+.|+..-. .....+..+.++
T Consensus 139 ~l~~~~~ipIa~gE~~~~~~~~~~~i~ 165 (229)
T cd00308 139 ALRRRTGIPIAADESVTTVDDALEALE 165 (229)
T ss_pred HHHCCCCCCEECCCCCCCHHHHHHHHH
T ss_conf 996136998637876789999999999
No 397
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=20.81 E-value=62 Score=13.59 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHCCCCCEEECHHHHH---HHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHC
Q ss_conf 8999987664204420330002333---5799985310003675331121464023443210
Q gi|254780215|r 111 VFLRHIEASRITGIPLVIHSRSADD---DMAAILQEEMKKGPFPFVIHCFSSSQKLADICLE 169 (262)
Q Consensus 111 vF~~ql~lA~e~~~pv~iH~r~a~~---~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~ 169 (262)
-+...++.+...+.+|.+...+... +...+|++.......++|++| +.+.+..+++
T Consensus 139 rLq~ll~~~~~~~~~v~~r~~~~~~d~~~~r~~Lkei~~~~~~~IIlDc---~~e~~~~iL~ 197 (372)
T cd06387 139 ILQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDC---EVERINTILE 197 (372)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHH
T ss_conf 9999998764059769999805778725689999997634762799989---8899999999
No 398
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.70 E-value=63 Score=13.58 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=15.3
Q ss_pred CCCEECCCCHHHHHHHHCC--C--CEEECCCC
Q ss_conf 3311214640234432103--5--20202332
Q gi|254780215|r 152 FVIHCFSSSQKLADICLEL--G--GYISFTGM 179 (262)
Q Consensus 152 ~i~H~FsG~~~~~~~~l~~--g--~y~S~~g~ 179 (262)
+-+=.=+-+.+.+++..+. | ||+|.+|+
T Consensus 151 I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~Gv 182 (265)
T COG0159 151 IFLVAPTTPDERLKKIAEAASGFIYYVSRMGV 182 (265)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 98869999989999999747985899966666
No 399
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=20.69 E-value=63 Score=13.58 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=27.8
Q ss_pred CCCCCCEECCCCH-HHHHHHHCCCC-EEECCCCCCHHHHHHHHHHHHC
Q ss_conf 6753311214640-23443210352-0202332211333223333210
Q gi|254780215|r 149 PFPFVIHCFSSSQ-KLADICLELGG-YISFTGMITFPKYDALRAIARG 194 (262)
Q Consensus 149 ~~~~i~H~FsG~~-~~~~~~l~~g~-y~S~~g~i~~~~~~~~~e~v~~ 194 (262)
|.+.|+|.=||.+ +++++.+++|. .+-|+..+-+-=...+|+.+..
T Consensus 245 pipLVLHGgSGvp~e~i~~AI~~GV~KINI~Tdlr~Aft~air~~~~~ 292 (345)
T cd00946 245 PLYFVFHGGSGSTKEEIREAISYGVVKMNIDTDTQWAYWEGVRNYYLK 292 (345)
T ss_pred CCEEEECCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 730785189999999999999839563345708899999999999984
No 400
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase; InterPro: IPR011821 Proteins in this entry are important in the interconversion of the sulphur-containing amino acids L-cysteine and L-methionine in bacteria. In bacteria, inorganic sulphur is reduced to sulphide, which is then used to displace the acetyl group of O-acetyl-L-serine to form the essential amino acid L-cysteine. Biosynthesis of L-methionine then occurs via the transsulphuration pathway which involves the sequential action of two pyridoxal 5'-phosphate (PLP) enzymes, cystathionine gamma-synthase (CGS) and cystathionine beta-lyase (CBL). Firstly CGS catalyses the formation of the intermediate cystathione from a homoserine ester and L-cysteine. This intermediate is then converted by CBL to L-homoserine, which is subsequently methylated by methionine synthase to form L-methionine. For more information see . The CGS enzyme (P00935 from SWISSPROT) from Escherichia coli is, like other CGS enzymes, a homotetramer composed of two catalytically active dimers . The active site of each dimer is found at the interface between the monomers and involves residues from each monomer. Catalysis occurs by alpha,gamma-elimination/replacement reactions..
Probab=20.62 E-value=63 Score=13.57 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=21.0
Q ss_pred EECCCCHHHHHHHHCCCCE-EECCCCCCHHH-HHHHHHHHHCCCCCCEEEEECC
Q ss_conf 1214640234432103520-20233221133-3223333210566717983078
Q gi|254780215|r 155 HCFSSSQKLADICLELGGY-ISFTGMITFPK-YDALRAIARGIPMDRVLVETDS 206 (262)
Q Consensus 155 H~FsG~~~~~~~~l~~g~y-~S~~g~i~~~~-~~~~~e~v~~iPldriLlETDs 206 (262)
=||.|++..++...+.|.| |-|. ..+ .+-++.+++.-..-=+|+||=|
T Consensus 98 DCYGGtYRLl~~lA~kG~~~v~fV----DQ~D~~al~~ALa~kdPKLVlIEtPS 147 (383)
T TIGR02080 98 DCYGGTYRLLNALAKKGQFKVQFV----DQSDEQALEAALAQKDPKLVLIETPS 147 (383)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEE----ECCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 267704888864520783389986----07628999999974698479986799
No 401
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=20.53 E-value=63 Score=13.55 Aligned_cols=105 Identities=7% Similarity=0.035 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHCCCCEEEEECC-------CHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 6899999999869989999167-------987789999999855-72332112445443344678899885310013332
Q gi|254780215|r 17 DRHDVIMRAHQANVLKMIAIAI-------KVKDFVPLIKLCQDY-PSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRV 88 (262)
Q Consensus 17 d~~~~i~~a~~~gv~~~i~~~~-------~~~~~~~~~~l~~~~-p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~ 88 (262)
.+.+.++.....|+..++..|+ +.++..+..+.+.+. .+.+-.-.|+.. ...+..+ +.+.+.+-.+
T Consensus 22 ~~~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~v~~~~~~~~~g~~~vi~g~g~-----~t~~~i~-la~~a~~~Ga 95 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-----GTATAIA-YAQAAEKAGA 95 (289)
T ss_pred HHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC-----HHHHHHH-HHHHHHHCCC
T ss_conf 999999999977999999793300621289999999999999981898517406763-----1999999-9999997599
Q ss_pred CEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH
Q ss_conf 10044677553322111024678999987664204420330002
Q gi|254780215|r 89 VAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS 132 (262)
Q Consensus 89 ~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~ 132 (262)
-||= +-=.||.. ..|..+++..-++|...++|+++.-+.
T Consensus 96 dav~-v~pPy~~~----~~~~~l~~~~~~ia~a~~lpi~lYn~~ 134 (289)
T cd00951 96 DGIL-LLPPYLTE----APQEGLYAHVEAVCKSTDLGVIVYNRA 134 (289)
T ss_pred CEEE-ECCCCCCC----CCHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 9999-76988889----999999999999998469986614887
No 402
>PRK11823 DNA repair protein RadA; Provisional
Probab=20.49 E-value=55 Score=13.96 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCEE--ECHH----HHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHC
Q ss_conf 2467899998766420442033--0002----3335799985310003675331121464023443210
Q gi|254780215|r 107 EQKVVFLRHIEASRITGIPLVI--HSRS----ADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLE 169 (262)
Q Consensus 107 ~Q~~vF~~ql~lA~e~~~pv~i--H~r~----a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~ 169 (262)
+=+++=.+.+++|++.+.|+++ |.-+ |...++|=| - -+|++ |.|+....-+++.
T Consensus 191 QVre~a~~L~~~AK~~~i~~~lVGHVTKdG~iAGPkvLEHm----V----DtVl~-fEGd~~~~~RiLR 250 (454)
T PRK11823 191 QVRECAAELTRLAKQSGIAVFLVGHVTKEGAIAGPRVLEHM----V----DTVLY-FEGDRHSRFRILR 250 (454)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHH----H----CEEEE-ECCCCCCCCEEEE
T ss_conf 99999999999997449828999977267764661452220----1----04687-5157665502456
No 403
>PRK08760 replicative DNA helicase; Provisional
Probab=20.47 E-value=63 Score=13.55 Aligned_cols=130 Identities=16% Similarity=0.148 Sum_probs=70.4
Q ss_pred HHHHHHHHHH--HHHHCCCCCEEECHH--HHHHHHHHHHHHHHCCCCCCCCEECCCC--HHHH-------HHHHCCCCEE
Q ss_conf 4678999987--664204420330002--3335799985310003675331121464--0234-------4321035202
Q gi|254780215|r 108 QKVVFLRHIE--ASRITGIPLVIHSRS--ADDDMAAILQEEMKKGPFPFVIHCFSSS--QKLA-------DICLELGGYI 174 (262)
Q Consensus 108 Q~~vF~~ql~--lA~e~~~pv~iH~r~--a~~~~l~iL~~~~~~~~~~~i~H~FsG~--~~~~-------~~~l~~g~y~ 174 (262)
-|..|.-++. .|.+.++||.+-+-. +..-+.+++........ . +--+|. .+.. .++-++..|+
T Consensus 241 GKTalalnia~~~A~~~~~~V~~fSLEMs~~ql~~Rlls~~s~v~~-~---~i~~g~l~~~e~~~~~~a~~~l~~~~l~i 316 (476)
T PRK08760 241 GKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINA-Q---RLRTGALEDEDWARVTGAIKMLKETKIFI 316 (476)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCH-H---HHHCCCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf 4789999999999983799789970369999999999998338976-7---77648999999999999999986088168
Q ss_pred ECCCCCCHHH-HHHHHHHHHCCCCCCEEEEECCCCCCCC--C--CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 0233221133-3223333210566717983078667877--7--68875882449999999998728998999999
Q gi|254780215|r 175 SFTGMITFPK-YDALRAIARGIPMDRVLVETDSPYIVPV--S--CQGKRNEPAYVVNTAKALAKEKDVSYEDLMEE 245 (262)
Q Consensus 175 S~~g~i~~~~-~~~~~e~v~~iPldriLlETDsP~l~p~--~--~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~ 245 (262)
-=++.++-.. ..+.|.+.+.-+++-+++ | |+--. + ...+..+-+.|..-+..+|+-.++++--+++.
T Consensus 317 dD~~~~t~~~ir~~~R~~k~~~~l~lvvI--D--YLqL~~~~~~~~~r~~~v~~isr~lK~lAkel~vpVi~LsQL 388 (476)
T PRK08760 317 DDTPGVSPEVLRSKCRRLKREHDLGLIVI--D--YLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIALSQL 388 (476)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEE--E--HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 57999999999999999987279987999--7--076415888874488999999999999999979978996315
No 404
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=20.45 E-value=63 Score=13.54 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=33.4
Q ss_pred CCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCC-------CCEEECCCCC----CHHHHHHHHHHHH
Q ss_conf 2033000233357999853100036753311214640234432103-------5202023322----1133322333321
Q gi|254780215|r 125 PLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL-------GGYISFTGMI----TFPKYDALRAIAR 193 (262)
Q Consensus 125 pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~l~~-------g~y~S~~g~i----~~~~~~~~~e~v~ 193 (262)
-+.+|.--+.....++++.....+...++.=.-..+.+.+..+++. +..=||+|.- +++|-.++|+..+
T Consensus 83 ~It~H~Ea~~~~~~~~i~~Ik~~g~k~GlAlnP~Tpi~~i~~~l~~vD~VLvMsV~PGf~GQ~Fi~~~l~KI~~lr~~~~ 162 (227)
T PRK09722 83 FITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVEAIKYYIHLADKVTVMTVDPGFAGQPFIPEMLDKIAELKAWRE 162 (227)
T ss_pred EEEECHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99956565056599999999986997223338999866887667437989999888999876566889999999999998
Q ss_pred CCCCCCEEEEECC
Q ss_conf 0566717983078
Q gi|254780215|r 194 GIPMDRVLVETDS 206 (262)
Q Consensus 194 ~iPldriLlETDs 206 (262)
.-.+ .+.+|-|+
T Consensus 163 ~~~~-~~~I~VDG 174 (227)
T PRK09722 163 REGL-EYEIEVDG 174 (227)
T ss_pred HCCC-CCEEEEEC
T ss_conf 2599-82699989
No 405
>COG2602 Beta-lactamase class D [Defense mechanisms]
Probab=20.05 E-value=65 Score=13.49 Aligned_cols=71 Identities=18% Similarity=0.459 Sum_probs=43.0
Q ss_pred CCCCCCCCCCCCCC----HHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHH
Q ss_conf 44677553322111----02467899998766420442033000233357999853100036753311214640234432
Q gi|254780215|r 92 GETGLDRYHNAHTI----EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADIC 167 (262)
Q Consensus 92 GEiGLD~~~~~~~~----e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~~~~~~~~ 167 (262)
|..| ||..+++ ..|..++++ |+. .++|.+-+.-+ -+-+++- ...++ +-.+|.=||.--....
T Consensus 140 ~~~~---~Wl~~sLkIS~~EQv~fL~r---L~~-~~LPFs~~a~~---~v~~~m~--~~~~~-~~~l~GKTG~~~~~~~- 205 (254)
T COG2602 140 GNPG---FWLESSLKISPKEQVIFLRR---LAQ-NELPFSAKAQD---LVKAIMI--LERGP-NWELHGKTGTGIVNTK- 205 (254)
T ss_pred CCCC---CEECCCCCCCHHHHHHHHHH---HHH-CCCCCCHHHHH---HHHHHHH--HHCCC-CEEEEECCCCCCCCCC-
T ss_conf 8998---11136652277999999999---974-66998878999---9987770--13089-7699840444653788-
Q ss_pred HCCCCEEECC
Q ss_conf 1035202023
Q gi|254780215|r 168 LELGGYISFT 177 (262)
Q Consensus 168 l~~g~y~S~~ 177 (262)
.+|||+|+-
T Consensus 206 -~~GWfVG~v 214 (254)
T COG2602 206 -NLGWFVGWV 214 (254)
T ss_pred -CCEEEEEEE
T ss_conf -750599999
No 406
>PRK13139 consensus
Probab=20.01 E-value=65 Score=13.48 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=9.5
Q ss_pred ECCCCHHHHHHHHCC--C--CEEECCC
Q ss_conf 214640234432103--5--2020233
Q gi|254780215|r 156 CFSSSQKLADICLEL--G--GYISFTG 178 (262)
Q Consensus 156 ~FsG~~~~~~~~l~~--g--~y~S~~g 178 (262)
+=+-+.+-++++.+. | |++|..|
T Consensus 153 aPtt~~~Ri~~i~~~a~gFiY~vs~~G 179 (254)
T PRK13139 153 APTSTDERMGKIAAAADGFIYCVARRG 179 (254)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEEECCC
T ss_conf 589998999999851698699996666
No 407
>pfam06555 consensus
Probab=20.01 E-value=65 Score=13.48 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHCCCCCCCEEC------CCCCC
Q ss_conf 788998853100133321004------46775
Q gi|254780215|r 72 NEVLVDELVCLASHPRVVAIG------ETGLD 97 (262)
Q Consensus 72 ~~~~~~~l~~l~~~~~~~aIG------EiGLD 97 (262)
.++..+.+..++.....|++| |+||.
T Consensus 20 ~eeA~~~~~~lI~~g~sV~~GGS~Tl~e~Gl~ 51 (200)
T pfam06555 20 KEEALELILELIPEGSTVGFGGSMTLFEIGVI 51 (200)
T ss_pred HHHHHHHHHHHCCCCCEEEECCHHHHHHHCCH
T ss_conf 99999999986899899986931718874969
Done!