HHsearch results for GI: 254780215 and protein with PDBid: 1j6o_A
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12
Probab=100.00 E-value=0 Score=528.69 Aligned_cols=257 Identities=35% Similarity=0.568 Sum_probs=246.2
Q ss_pred CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 91686138887565226899999999869989999167987789999999855723321124454433446788998853
Q gi|254780215|r 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELV 80 (262)
Q Consensus 1 M~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~ 80 (262)
||||+||||+...|++|+++++++|.++||.+++++|+++++|.+++++++++| .+++|+|+|||++.+..+++++.+.
T Consensus 12 ~lIDtH~HL~~~~~~~d~~~vl~~a~~~gv~~ii~~~~~~~~~~~~~~l~~~~~-~v~~a~GiHP~~~~~~~~~~~~~l~ 90 (268)
T 1j6o_A 12 HMVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSD-RIFCSVGVHPHDAKEVPEDFIEHLE 90 (268)
T ss_dssp CEEEEEECTTSGGGTTTHHHHHHTTTTTTEEEEEEECSSHHHHHHHHHHHTTCT-TEEEEECCCGGGGGGCCTTHHHHHH
T ss_pred CEEEECCCCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 779853478972446599999999998899889990599999999999984589-6688746898863657677899999
Q ss_pred HHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCCC
Q ss_conf 10013332100446775533221110246789999876642044203300023335799985310003675331121464
Q gi|254780215|r 81 CLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSS 160 (262)
Q Consensus 81 ~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG~ 160 (262)
.++..++++|||||||||+++.++.+.|+++|++||++|+++++||+||||+|+++++++|+++.. ...++|+|||+|+
T Consensus 91 ~~~~~~~~vaIGEiGLD~~~~~~~~~~Q~~~F~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~-~~~~~i~H~fsG~ 169 (268)
T 1j6o_A 91 KFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIRDAYSEAYEILRTESL-PEKRGVIHAFSSD 169 (268)
T ss_dssp HHTTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHHHHHHHHHHSCC-CSSCEEETTCCSC
T ss_pred HHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCC-CCCCEEEEECCCC
T ss_conf 987308789983466664545237899999999999999861998799710068999999998258-7667589854898
Q ss_pred HHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
Q ss_conf 02344321035202023322113332233332105667179830786678777688758824499999999987289989
Q gi|254780215|r 161 QKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYE 240 (262)
Q Consensus 161 ~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~e 240 (262)
.+++++++++||||||||.+|++++++++++++.+|+||||+||||||++|.|+||++|+|++|+.|++.+|+++|++.+
T Consensus 170 ~e~~~~~l~~G~y~s~~g~~~~~~~~~~~~~v~~iPldrlLlETDaP~l~p~~~~g~~n~P~~l~~v~~~iA~i~~~~~e 249 (268)
T 1j6o_A 170 YEWAKKFIDLGFLLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFLPPQPFRGKRNEPKYLKYVVETISQVLGVPEA 249 (268)
T ss_dssp HHHHHHHHHHTEEEEECGGGGCTTCHHHHHHHHHHCGGGEEECCCBTSCCCGGGTTSCCCGGGHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 99999999789959855764400089999999847865068745898777655578879759999999999988498999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998425687
Q gi|254780215|r 241 DLMEETTKNALKLFSKISE 259 (262)
Q Consensus 241 ei~~~~~~N~~~~f~~~~~ 259 (262)
++++++++|+++||+++++
T Consensus 250 ~v~~~~~~N~~~lF~~~k~ 268 (268)
T 1j6o_A 250 KVDEATTENARRIFLEVKE 268 (268)
T ss_dssp HHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999998429