HHsearch results for GI: 254780215 and protein with PDBid: 1yix_A

>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX research center for structural genomics, NYSGXRC, structural genomics, PSI; 1.90A {Escherichia coli K12} SCOP: c.1.9.12
Probab=100.00  E-value=0  Score=508.59  Aligned_cols=253  Identities=39%  Similarity=0.620  Sum_probs=236.4

Q ss_pred             CEEEEECCCCCH---HHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             916861388875---65226899999999869989999167987789999999855723321124454433446788998
Q gi|254780215|r    1 MLIDTHCHLLLP---DFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVD   77 (262)
Q Consensus         1 M~iD~H~HL~~~---~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~   77 (262)
                      ||||+||||+..   .+.+|+++++++|..+||.+++++|+++++|.++.+++++|| .+++++|+|||++....+  ++
T Consensus         2 ~liDtH~Hl~~~~~e~~~~d~~~vi~~a~~~gv~~ii~~~~~~~~~~~~~~l~~~~~-~i~~~~GiHP~~~~~~~~--~e   78 (265)
T 1yix_A            2 FLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERD-NVVFSCGVHPLNQNDPYD--VE   78 (265)
T ss_dssp             CEEEEEECGGGSCTTTTCSSHHHHHHHHHHTTEEEEEECCSSHHHHHHHHHHHCSCT-TEEEEECCCTTCCSSCCC--HH
T ss_pred             EEEEEECCCCCCCCCHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCHHH--HH
T ss_conf             699860258863343012389999999998599899994289999999999997489-848997478632178778--99


Q ss_pred             HHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEEC
Q ss_conf             85310013332100446775533221110246789999876642044203300023335799985310003675331121
Q gi|254780215|r   78 ELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCF  157 (262)
Q Consensus        78 ~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~F  157 (262)
                      .+.+++.+++++|||||||||+++..+.+.|+++|++||++|+++++||+||||+|+++++++++++.. ...++|+|||
T Consensus        79 ~l~~l~~~~~~vaiGEiGLD~~~~~~~~~~Q~~~f~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~-~~~~~i~H~f  157 (265)
T 1yix_A           79 DLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKV-TDCGGVLHCF  157 (265)
T ss_dssp             HHHHHHTSTTEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHHHHHHHHHHTTG-GGTCEEETTC
T ss_pred             HHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC-CCCCEEEEEE
T ss_conf             999974257715765305886644331688999999999999874998411331158999999998347-8865389840


Q ss_pred             CCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             46402344321035202023322113332233332105667179830786678777688758824499999999987289
Q gi|254780215|r  158 SSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDV  237 (262)
Q Consensus       158 sG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~  237 (262)
                      ||+.+++++++++||||||||.+++++++++|++++.+|+||||+||||||++|.|+||++|+|++++.|++++|++||+
T Consensus       158 sG~~~~a~~~l~~g~~isi~g~~~~~~~~~~~~~v~~iPldrlLlETD~P~~~p~~~rg~~n~P~~l~~v~~~iA~l~~~  237 (265)
T 1yix_A          158 TEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGV  237 (265)
T ss_dssp             CSCHHHHHHHHTTTCEEEECGGGGSTTCHHHHHHHHHSCGGGEEECCCBTSCCCTTCTTSCCCGGGHHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             69999999999869879125544413479999999850434457613786567655589888569999999999988498


Q ss_pred             CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             989999999999999842568
Q gi|254780215|r  238 SYEDLMEETTKNALKLFSKIS  258 (262)
Q Consensus       238 ~~eei~~~~~~N~~~~f~~~~  258 (262)
                      +.+++++++++|+++||| ++
T Consensus       238 ~~eel~~~~~~N~~~lf~-i~  257 (265)
T 1yix_A          238 AVEELAQVTTDNFARLFH-ID  257 (265)
T ss_dssp             CHHHHHHHHHHHHHHHTT-CC
T ss_pred             CHHHHHHHHHHHHHHHHC-CC
T ss_conf             999999999999999959-99