RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780215|ref|YP_003064628.1| hypothetical protein CLIBASIA_00500 [Candidatus Liberibacter asiaticus str. psy62] (262 letters) >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 Length = 268 Score = 226 bits (576), Expect = 5e-60 Identities = 90/258 (34%), Positives = 143/258 (55%), Gaps = 2/258 (0%) Query: 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSV 61 ++DTH HL FD+DR+ VI + N+ ++ + + ++D + L + IFCSV Sbjct: 13 MVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDR-IFCSV 71 Query: 62 GTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRI 121 G HP A E E ++ L A +VVAIGETGLD + N E QK VF+ IE + Sbjct: 72 GVHPHDAKEVPEDFIEHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGK 131 Query: 122 TGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMIT 181 +PLV+H R A + IL+ E VIH FSS + A ++LG + G +T Sbjct: 132 LNLPLVVHIRDAYSEAYEILRTE-SLPEKRGVIHAFSSDYEWAKKFIDLGFLLGIGGPVT 190 Query: 182 FPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYED 241 +PK +ALR + + + ++ +++ETD P++ P +GKRNEP Y+ + +++ V Sbjct: 191 YPKNEALREVVKRVGLEYIVLETDCPFLPPQPFRGKRNEPKYLKYVVETISQVLGVPEAK 250 Query: 242 LMEETTKNALKLFSKISE 259 + E TT+NA ++F ++ E Sbjct: 251 VDEATTENARRIFLEVKE 268 >2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} Length = 301 Score = 211 bits (537), Expect = 2e-55 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 43/295 (14%) Query: 2 LIDTHCHLLLPDF----------DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQ 51 ID +L P F +D DVI RA + V K + ++D + L Q Sbjct: 3 FIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQ 62 Query: 52 DYPSSIFCSVGTHPCHAHE----ENEVLVDELVCLA--SHPRVVAIGETGLDRYHNAH-T 104 F +VG HP E ++ + EL+ LA + +VVAIGE GLD Sbjct: 63 TNGM-FFSTVGCHPTRCGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCP 121 Query: 105 IEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLA 164 + Q F + E S T +P+ +H R++ + I + + V+H F +++ A Sbjct: 122 KDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDITKRNRDR-CVGGVVHSFDGTKEAA 180 Query: 165 DICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGK------- 217 ++L YI F G + + + + IP +++++ETD+P+ S Sbjct: 181 AALIDLDLYIGFNGCSLKTEAN--LEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTA 238 Query: 218 ---------------RNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKI 257 RNEP +++ + ++ +D +L N +K+F + Sbjct: 239 FPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYNNTIKVFFPV 293 >3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.50A {Saccharomyces cerevisiae YJM789} Length = 401 Score = 174 bits (441), Expect = 2e-44 Identities = 68/379 (17%), Positives = 110/379 (29%), Gaps = 126/379 (33%) Query: 2 LIDTHCHLLLPDF----------DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQ 51 D +L P F D ++ RA Q +V + + + I+L Sbjct: 14 YYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIELVS 73 Query: 52 DY----PSSIFCSVGTHPCHAHEENEVLVDELVC-------------------------- 81 P ++ ++G HPC +E + + Sbjct: 74 SVKDLSPLKLYHTIGVHPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVISNPSF 133 Query: 82 ----------------LASHPRVVAIGETGLDRYH-NAHTIEEQKVVFLRHIEASRITG- 123 +IGE GLD + + E QKV F ++ S + Sbjct: 134 AQGKLKELYDLMNQQAKPHDTSFRSIGEIGLDYDRFHYSSKEMQKVFFEEQLKISCLNDK 193 Query: 124 ---IPLVIHSRSADDDMAAILQEEM-------------------------KKGPFPFVIH 155 PL +H RSA DD IL+ + V+H Sbjct: 194 LSSYPLFLHMRSACDDFVQILERFVVGFTDEKDTFQLQKLGASSSSGFYKFHPDRKLVVH 253 Query: 156 CFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQ 215 F+ S L L I + + A+ + IP +R+L+ETD+P+ Sbjct: 254 SFTGSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCEIKRTH 313 Query: 216 GK----------------------------------------RNEPAYVVNTAKALAKEK 235 RNEP + A +++ K Sbjct: 314 ASFQYLAKYQEVRDFEYPAFKSVKKNKLADKLNAEELYMVKGRNEPCNMEQVAIVVSEVK 373 Query: 236 DVSYEDLMEETTKNALKLF 254 DV L++ T K K+F Sbjct: 374 DVDLATLIDTTWKTTCKIF 392 >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural genomics, PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Length = 265 Score = 164 bits (414), Expect = 2e-41 Identities = 93/255 (36%), Positives = 143/255 (56%), Gaps = 1/255 (0%) Query: 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60 MLIDTH HL +D+D +VI RA +A V +M + +KL +Y ++ Sbjct: 1 MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDF-LYGI 59 Query: 61 VGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASR 120 +G HP A + E ++ + LA HP+V+ IGE GLD + + + QK VF + I ++ Sbjct: 60 IGWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAK 119 Query: 121 ITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMI 180 +P++IH+R A D IL EE + + S + + +L YIS G + Sbjct: 120 RLKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPV 179 Query: 181 TFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYE 240 TF + +A+ + M+R+LVETD+PY+ P +GKRNEPA V A+ +A+ K +SYE Sbjct: 180 TFKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYE 239 Query: 241 DLMEETTKNALKLFS 255 ++ E+TTKNA KLF+ Sbjct: 240 EVCEQTTKNAEKLFN 254 >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 Length = 264 Score = 163 bits (413), Expect = 3e-41 Identities = 74/260 (28%), Positives = 126/260 (48%), Gaps = 7/260 (2%) Query: 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60 + D +L F +DR DV+ A A V ++ +++ KL + Y S + + Sbjct: 4 RMFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSS-CWST 62 Query: 61 VGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASR 120 G HP + + + ++ LA+ P VVAIGE GLD N T EEQ+ F+ + + Sbjct: 63 AGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAA 122 Query: 121 ITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMI 180 +P+ +H R A + +L+ + K P V+HCF+ +++ C+ G YI TG + Sbjct: 123 DLNMPVFMHCRDAHERFMTLLEPWLDKLPG-AVLHCFTGTREEMQACVAHGIYIGITGWV 181 Query: 181 TFPKY-DALRAIARGIPMDRVLVETDSPYIVPVSCQ----GKRNEPAYVVNTAKALAKEK 235 + LR + IP +++L+ETD+PY++P +RNEPA++ + + +A + Sbjct: 182 CDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWR 241 Query: 236 DVSYEDLMEETTKNALKLFS 255 L T N LF Sbjct: 242 GEDAAWLAATTDANVKTLFG 261 >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX research center for structural genomics, NYSGXRC, structural genomics, PSI; 1.90A {Escherichia coli K12} SCOP: c.1.9.12 Length = 265 Score = 162 bits (410), Expect = 8e-41 Identities = 91/258 (35%), Positives = 141/258 (54%), Gaps = 7/258 (2%) Query: 1 MLIDTHCHLLLPDFD---EDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSI 57 L+D+HCHL D++ +D DV+ +A +V +A+A + ++ + L + + + Sbjct: 2 FLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNVV 61 Query: 58 FCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIE 117 F + + L VVA+GETGLD Y+ T Q+ F+ HI+ Sbjct: 62 FSCGVHPLNQNDPYDVEDLRRLAA---EEGVVALGETGLDYYYTPETKVRQQESFIHHIQ 118 Query: 118 ASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT 177 R P+++H+R A D AI E K V+HCF+ ++ A L+LG YISF+ Sbjct: 119 IGRELNKPVIVHTRDARADTLAI-LREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFS 177 Query: 178 GMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDV 237 G++TF + LR AR +P+DR+LVETDSPY+ PV +GK N+PA V + A+ +A K V Sbjct: 178 GIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGV 237 Query: 238 SYEDLMEETTKNALKLFS 255 + E+L + TT N +LF Sbjct: 238 AVEELAQVTTDNFARLFH 255 >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infectious disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} Length = 325 Score = 158 bits (400), Expect = 1e-39 Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 46/296 (15%) Query: 2 LIDTHCHLLLPDF----------DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQ 51 ID +L ++ +ED V+ RA + + +I + + DF I++ Sbjct: 28 FIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIEIIN 87 Query: 52 DYP----SSIFCSVGTHPCHAHEENEVLVDE---LVCLASHPRVVAIGETGLDRYH--NA 102 Y + ++G HP +E + + L+C + +VVAIGE GLD + Sbjct: 88 KYQNLTNIKLVTTIGVHPTRTNELKQEGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFS 147 Query: 103 HTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQK 162 + I + +P H R + D+ + +E+ V+HCF +++ Sbjct: 148 DKETQLSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQL-NKELGYNGCKGVVHCFDGTEE 206 Query: 163 LADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPV---------- 212 + L G I TG + L + + IP++R+ +ETD PY Sbjct: 207 EMNQILNEGWDIGVTGN--SLQSIELLNVMKQIPIERLHIETDCPYCGIKKTSAGFKYLK 264 Query: 213 --------------SCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254 +RNEP+ +++ A ++ K +S + + + N++ ++ Sbjct: 265 EKDFGVKVEKYQRNKYVQRRNEPSNIIDIAIIMSSIKHISLFEFVNKVYSNSMNMY 320 >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 Length = 259 Score = 154 bits (390), Expect = 2e-38 Identities = 71/257 (27%), Positives = 128/257 (49%), Gaps = 5/257 (1%) Query: 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60 IDTHCH P F D + RA QA V K+I A + ++F ++ L ++Y ++ + Sbjct: 4 RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQP-LYAA 62 Query: 61 VGTHPCHAHEENEVLVDELVCL--ASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEA 118 +G HP + ++V +++L +VVA+GE GLD + + E Q+ + ++ Sbjct: 63 LGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKL 122 Query: 119 SRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTG 178 ++ +P+++HSR D +A L+ P V+H FS S + A+ ++LG I G Sbjct: 123 AKRYDLPVILHSRRTHDKLAMHLKRHDL--PRTGVVHGFSGSLQQAERFVQLGYKIGVGG 180 Query: 179 MITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVS 238 IT+P+ R + +P+ +L+ETD+P + QG+ N P L + + Sbjct: 181 TITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRREP 240 Query: 239 YEDLMEETTKNALKLFS 255 +++ + N LF+ Sbjct: 241 ADEIAQALLNNTYTLFN 257 >1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3 Length = 291 Score = 143 bits (362), Expect = 3e-35 Identities = 38/288 (13%), Positives = 80/288 (27%), Gaps = 39/288 (13%) Query: 2 LIDTHCHLL--LPDFDEDRHDVI----------MRAHQANVLKMIAIAIKV--KDFVPLI 47 H HL L F + + V +I + + ++ ++ Sbjct: 7 YTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFML 66 Query: 48 KLCQDYPSSIFCS----------VGTHPCHAHEENEVLVDELVCLASHP--RVVAIGETG 95 + ++ ++ E + +VDE+ + I E G Sbjct: 67 DVMRETGINVVACTGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIG 126 Query: 96 LDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMA---AILQEEMKKGPFPF 152 E+ VF+ A TG P+ H+ + + + + Sbjct: 127 TSEGKITPLEEK---VFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTV 183 Query: 153 VIHCFSSSQKLADICLELGGYISFTGMITFPKY------DALRAIARGIPMDRVLVETDS 206 + ++LG Y+ F + Y L A+ ++RV++ D Sbjct: 184 GHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDI 243 Query: 207 PYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254 + G + L + S D+ +N + F Sbjct: 244 TRRSHLKANGGYGYDYLLTTFIPQLR-QSGFSQADVDVMLRENPSQFF 290 >3f4c_A Organophosphorus hydrolase; alpha-beta barrel, amidohydrolase, binuclear metal enzyme, glycerol-bound; HET: KCX; 2.07A {Geobacillus stearothermophilus 10} PDB: 3f4d_A* Length = 332 Score = 143 bits (361), Expect = 3e-35 Identities = 38/307 (12%), Positives = 81/307 (26%), Gaps = 53/307 (17%) Query: 2 LIDTHCHLLL----------------PDFDEDRHDVIMRAHQANVLKMIAIAIKV--KDF 43 H H L + + + + + ++ ++ Sbjct: 19 KTLIHEHFLFGYPGFQGDVTRGTFREDEALRVAVEAAEKMKRHGIQTVVDPTPNDCGRNP 78 Query: 44 VPLIKLCQDYPSSIFCSVGTHPCHAHEE--------NEVLVDELVCLASHPRVVAIGETG 95 L ++ ++ +I C+ G + D++ + I +TG Sbjct: 79 AFLRRVAEETGLNIICATGYYYEGEGAPPYFQFRRLLGTAEDDIYDMFMAELTEGIADTG 138 Query: 96 LD------RYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQ--EEMKK 147 + E +K+ F A + TG ++ H++ E Sbjct: 139 IKAGVIKLASSKGRITEYEKMFFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGAD 198 Query: 148 GPFPFVIHCFSS-SQKLADICLELGGYISFTGMITFPKYD---------ALRAIARGIPM 197 + H + L G YI+F L A+ R Sbjct: 199 PKKIVIGHMCGNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYE 258 Query: 198 DRVLVETDS-------PYIVPVSCQGKRNEPAYVVNTAKALA--KEKDVSYEDLMEETTK 248 ++++ D+ P+ +P + K + + E L + Sbjct: 259 KQIMLSHDTVNVWLGRPFTLPEPFAEMMKNWHVEHLFVNIIPALKNEGIRDEVLEQMFIG 318 Query: 249 NALKLFS 255 N LFS Sbjct: 319 NPAALFS 325 >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} Length = 254 Score = 140 bits (354), Expect = 3e-34 Identities = 54/259 (20%), Positives = 94/259 (36%), Gaps = 13/259 (5%) Query: 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60 LID H HL D D + RA + L ++++ + + L P ++ + Sbjct: 2 SLIDFHVHL---DLYPDP-VAVARACEERQLTVLSVTTTPAAWRGTLALAAGRPH-VWTA 56 Query: 61 VGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASR 120 +G HP E L P +GE GLD + Q+ +HI Sbjct: 57 LGFHPEVVSERAADLPW---FDRYLPETRFVGEVGLDGSPSLRGTWTQQFAVFQHILRRC 113 Query: 121 ITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMI 180 ++ S + + E ++H +S S + LG + S Sbjct: 114 EDHGGRILSIHSRRAESEVLNCLEANPRSGTPILHWYSGSVTELRRAISLGCWFSVGPT- 172 Query: 181 TFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYE 240 + A+ R +P DRVL ETD P++ G+ P V + + L+K + Sbjct: 173 -MVRTQKGAALIRSMPRDRVLTETDGPFLEL---DGQAALPWDVKSVVEGLSKIWQIPAS 228 Query: 241 DLMEETTKNALKLFSKISE 259 ++ +N +L + E Sbjct: 229 EVERIVKENVSRLLGTVRE 247 >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* Length = 314 Score = 136 bits (343), Expect = 5e-33 Identities = 33/299 (11%), Positives = 80/299 (26%), Gaps = 49/299 (16%) Query: 3 IDTHCHLLL---------PDFDEDRHDV------IMRAHQANVLKMIAIAIKVKDFVP-- 45 H HL + P + + + RA Q V ++ + Sbjct: 19 TLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRF 78 Query: 46 LIKLCQDYPSSIFCSVGTHP--CHAHEENEVLVDELV---------CLASHPRVVAIGET 94 + K+ + ++ G + +DE+ + + Sbjct: 79 MEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKI 138 Query: 95 GLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAI----LQEEMKKGPF 150 D ++ + V A++ T +P++ HS + ++ +E + G Sbjct: 139 AADEPGI---TKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKI 195 Query: 151 PFVIHCFSSSQKLADICLELGGYISFTGMITFPKY------DALRAIARGIPMDRVLVET 204 + + + G +I + + + D++++ Sbjct: 196 LIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISH 255 Query: 205 DSPYIVPVSCQGKRNEP--------AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255 D + +P + K V+ E + +N K FS Sbjct: 256 DYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314 >3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} Length = 261 Score = 124 bits (312), Expect = 2e-29 Identities = 44/270 (16%), Positives = 89/270 (32%), Gaps = 40/270 (14%) Query: 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPL-------------- 46 M D+H H F E +++ + + ++ ++A Sbjct: 1 MYFDSHLHSEGLGFSE-----LVKLKENGIKEVCSLAFFPVKPKYPQTMIDVFRKLTEFE 55 Query: 47 IKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIE 106 C+ + +VG HP + E ++ VA GE GL+ + Sbjct: 56 PLRCEAAGVKMHPAVGIHPRCIPPDYE----FVLGYLEEGEWVAFGEIGLELVTD----- 106 Query: 107 EQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEM--KKGPFPFVIHCFSSSQKLA 164 E+ V +E ++ +P +IH+ + A E+ + + + Sbjct: 107 EEIEVLKSQLELAKRMDVPCIIHTPRGNKLKATRKTLEILESLDFPADLAVIDHVNFETL 166 Query: 165 DICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYV 224 D+ LE +I T + I +R ++ +D+ Y + E V Sbjct: 167 DMVLETEYWIGLTVQPGKLSAEDAARIVAEHGPERFMLNSDAGY--------RDVEITTV 218 Query: 225 VNTAKALAKEKDVSYEDLMEETTKNALKLF 254 A + + V E++ + +NA K Sbjct: 219 AEAAVKIE--EAVGREEMEKVARENARKFL 246 >3ojg_A Phosphotriesterase; (beta/alpha)8 barrel, lactonase, hydrolase; HET: KCX HL4; 1.60A {Geobacillus kaustophilus} PDB: 3f4c_A* 3f4d_A* Length = 330 Score = 121 bits (305), Expect = 1e-28 Identities = 41/307 (13%), Positives = 85/307 (27%), Gaps = 53/307 (17%) Query: 2 LIDTHCHLL--LPDFDEDRH--------------DVIMRAHQANVLKMI--AIAIKVKDF 43 H H L P F D + + + + ++ ++ Sbjct: 23 KTLIHEHFLFGYPGFQGDVTRGTFREDESLRVAVEAAEKMKRHGIQTVVDPTPNDCGRNP 82 Query: 44 VPLIKLCQDYPSSIFCSVGTHP--------CHAHEENEVLVDELVCLASHPRVVAIGETG 95 L ++ ++ +I C+ G + D++ + I +TG Sbjct: 83 AFLRRVAEETGLNIICATGYYYEGEGAPPYFQFRRLLGTAEDDIYDMFMAELTEGIADTG 142 Query: 96 LDRYHNAHTI------EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAA--ILQEEMKK 147 + E +K+ F A + TG ++ H++ L E Sbjct: 143 IKAGVIKLASSKGRITEYEKMFFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGAD 202 Query: 148 GPFPFVIHCFSSSQK-LADICLELGGYISFTGMITFPKYD---------ALRAIARGIPM 197 + H ++ L G YI+F L A+ R Sbjct: 203 PKKIVIGHMCGNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYE 262 Query: 198 DRVLVETDS-------PYIVPVSCQGKRNEPAYVVNTAKALA--KEKDVSYEDLMEETTK 248 ++++ ++ P+ +P + K + + E L + Sbjct: 263 KQIMLSHNTVNVWLGRPFTLPEPFAEMMKNWHVEHLFVNIIPALKNEGIRDEVLEQMFIG 322 Query: 249 NALKLFS 255 N LFS Sbjct: 323 NPAALFS 329 >3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} Length = 364 Score = 114 bits (285), Expect = 3e-26 Identities = 38/279 (13%), Positives = 81/279 (29%), Gaps = 33/279 (11%) Query: 8 HLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIK-LCQDYPSSIFCSVGTHPC 66 ++ L D D +V A + + ++ + + + G + Sbjct: 79 NIALDDLDLAIAEVKQFAAVGGRSIVDPTCRGIGRDPVKLRRISAETGVQVVMGAGYYLA 138 Query: 67 HAHEEN----------EVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHI 116 + E + +V E + G G + T E++ Sbjct: 139 SSMPETAARLSADDIADEIVAEALEGTDGTDARI-GLIGEIGVSSDFT-AEEEKSLRGAA 196 Query: 117 EASRITGIPLVIHSRSADDD---MAAILQEEMKKGPFPFVIHCFSSSQKLADI--CLELG 171 A TG+PL++H + +++EE + H S + G Sbjct: 197 RAQVRTGLPLMVHLPGWFRLAHRVLDLVEEEGADLRHTVLCHMNPSHMDPVYQATLAQRG 256 Query: 172 GYISFTGMITFPKY--------------DALRAIARGIPMDRVLVETDSPYIVPVSCQGK 217 ++ F + Y A+ +A +DR+L+ D + ++ G Sbjct: 257 AFLEFDMIGMDFFYADQGVQCPSDDEVARAILGLADHGYLDRILLSHDVFVKMMLTRYGG 316 Query: 218 RNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256 A+V + + L N ++F Sbjct: 317 NG-YAFVTKHFLPRLRRHGLDDAALETLMVTNPRRVFDA 354 >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* Length = 339 Score = 112 bits (282), Expect = 6e-26 Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 23/223 (10%) Query: 53 YPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVF 112 ++ F + E E++ E+ + + A G L +A T +++ F Sbjct: 118 GATTYFKFRASLGDAESEIYEMMRTEVTEGIAGTGIRA-GVIKLASSRDAIT-PYEQLFF 175 Query: 113 LRHIEASRITGIPLVIHSRSADD--DMAAILQEEMKKGPFPFVIHCFSSSQK-LADICLE 169 R TG+P++ H++ A +L + H ++ L Sbjct: 176 RAAARVQRETGVPIITHTQEGQQGPQQAELLTSLGADPARIMIGHMDGNTDPAYHRETLR 235 Query: 170 LGGYISFTGMITFPKY---------DALRAIARGIPMDRVLVETDSP--YIVPVSCQGKR 218 G I+F + L + DR+L+ DS ++ + Sbjct: 236 HGVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDSIWHWLGRPPAIPEA 295 Query: 219 NEPA-------YVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254 PA ++ + + + ++ E + + T N +LF Sbjct: 296 ALPAVKDWHPLHISDDILPDLRRRGITEEQVGQMTVGNPARLF 338 >2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ... Length = 330 Score = 112 bits (280), Expect = 8e-26 Identities = 46/310 (14%), Positives = 82/310 (26%), Gaps = 55/310 (17%) Query: 2 LIDTHCHLLL---------PDFDEDRHDVI-------MRAHQANVLKMIAIAI--KVKDF 43 TH H+ P+F R + RA A V ++ ++ +D Sbjct: 17 FTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDV 76 Query: 44 VPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGET-----GLDR 98 L ++ + I + G V+EL I +T + Sbjct: 77 SLLAEVSRAADVHIVAATGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKV 136 Query: 99 YHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAI----LQEEMKKGPFPFVI 154 Q++V AS TG+P+ H+ ++ D E + Sbjct: 137 ATTGKATPFQELVLKAAARASLATGVPVTTHTAASQRDGEQQAAIFESEGLSPSRVCIGH 196 Query: 155 HCFSSSQKLADICLELGGYISFTGMITFPKY--------------------DALRAIARG 194 + G I + ++A+ Sbjct: 197 SDDTDDLSYLTALAARGYLIGLDHIPYSAIGLEDNASASALLGIRSWQTRALLIKALIDQ 256 Query: 195 IPMDRVLVETDSPYIVP-----VSCQGKRNEPA---YVVNTAKALAKEKDVSYEDLMEET 246 M ++LV D + + R P ++ +EK V E L T Sbjct: 257 GYMKQILVSNDWTFGFSSYVTNIMDVMDRVNPDGMAFIPLRVIPFLREKGVPQETLAGIT 316 Query: 247 TKNALKLFSK 256 N + S Sbjct: 317 VTNPARFLSP 326 >2qpx_A Predicted metal-dependent hydrolase of the TIM- barrel fold; YP_805737.1, putative metal-dependent hydrolase, structural genomics; HET: KCX MSE; 1.40A {Lactobacillus casei atcc 334} Length = 376 Score = 79.0 bits (194), Expect = 1e-15 Identities = 37/268 (13%), Positives = 71/268 (26%), Gaps = 31/268 (11%) Query: 11 LPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHE 70 P D D+ ++ + ++ A +DF+ + + V A Sbjct: 108 DPILDLDQTAELVGIPVKAIYRLETHA---EDFMLEHDNFAAWWQAFSNDV----KQAKA 160 Query: 71 ENEVLVDELVC----LASHPRVVAIGETGLDRY-HNAHTIEEQKV----VFLRHIEASRI 121 V + L P V G D + H+ K + Sbjct: 161 HGFVGFKSIAAYRVGLHLEPVNVIEAAAGFDTWKHSGEKRLTSKPLIDYMLYHVAPFIIA 220 Query: 122 TGIPLVIHSRSADDD----------MAAILQEEMKKGPFPFVIHCFSSSQKLADICLELG 171 +PL H D D M L+ KKG ++HC+ ++ + Sbjct: 221 QDMPLQFHVGYGDADTDMYLGNPLLMRDYLKAFTKKGLKVVLLHCYPYHREAGYLASVFP 280 Query: 172 GYISFTGMITF----PKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNT 227 ++ P R+L +D+ + R +V Sbjct: 281 NLYFDISLLDNLGPSGASRVFNEAVELAPYTRILFASDASTYPEMYGLAARQFKQALVAH 340 Query: 228 AKALAKEKDVSYEDLMEE-TTKNALKLF 254 L + + + + KL+ Sbjct: 341 FNQLPFVDLAQKKAWINAICWQTSAKLY 368 Score = 26.3 bits (57), Expect = 7.6 Identities = 8/19 (42%), Positives = 11/19 (57%) Query: 2 LIDTHCHLLLPDFDEDRHD 20 L+D HCH L+ +R D Sbjct: 14 LLDHHCHFLIDGKVPNRDD 32 >3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A* Length = 363 Score = 53.1 bits (126), Expect = 6e-08 Identities = 37/308 (12%), Positives = 88/308 (28%), Gaps = 54/308 (17%) Query: 2 LIDTHCHLLL---------PDFDEDRHDVIMRAHQANVLK---------MIAIAIKVKDF 43 + D H H + DF D ++ + + + + V Sbjct: 22 ITDCHDHFIKNGGPEVEEHIDFLMLNVDASIKEFKEFIDRGGSTIVTMDPPNVGRDVLKT 81 Query: 44 VPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAH 103 + + ++ ++ S G H +++ + + VA E G+D Y+ Sbjct: 82 LEIANAVKNLGGNVIMSTGFHKAKFYDKYSSWLAVVPTEEIVKMCVAEIEEGMDEYNYNG 141 Query: 104 TIEEQKV---------------------VFLRHIEASRITGIPLVIHSRSADDDMAAILQ 142 + ++ S +TG P+++H++ + Sbjct: 142 PVVKRSKAKAGIIKAGTGYGAIDRLELKALEVAARTSILTGCPILVHTQLGTMALEVAKH 201 Query: 143 EEMKKGPFPFVI----HCFSSSQKLADICLELGGYISFTGMITFPKY------DALRAIA 192 + + + E G + F G Y + ++ + Sbjct: 202 LIGFGANPDKIQISHLNKNPDKYYYEKVIKETGVTLCFDGPDRVKYYPDSLLAENIKYLV 261 Query: 193 RGIPMDRVLVETDSPYIVPVSCQGKRNE-----PAYVVNTAKALAKEKDVSYEDLMEETT 247 + + D+ I+ G AY+ + L K+ VS E + + Sbjct: 262 DKGLQKHITLSLDAGRILYQRNYGLTKGKQTFGLAYLFDRFLPLLKQVGVSKEAIFDILV 321 Query: 248 KNALKLFS 255 N ++ + Sbjct: 322 NNPKRVLA 329 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 42.2 bits (99), Expect = 1e-04 Identities = 41/220 (18%), Positives = 66/220 (30%), Gaps = 99/220 (45%) Query: 104 TIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPF-PFVI-------- 154 T+ + K + +I A + P S SA L + +G I Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSA-------LFRAVGEGNAQLVAIFGGQGNTD 167 Query: 155 HCFSSSQKLADI-----CLELGGYISFTGMITFPKYDALRAIARGIPMDR---------V 200 F ++L D+ L +G I F+ + L + R +D + Sbjct: 168 DYF---EELRDLYQTYHVL-VGDLIKFSA-------ETLSELIRT-TLDAEKVFTQGLNI 215 Query: 201 LV-----ET--DSPYI--VPVSC------------------------------------Q 215 L D Y+ +P+SC Q Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275 Query: 216 GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALK-LF 254 G +V TA A+A E D S+E + + A+ LF Sbjct: 276 G-------LV-TAVAIA-ETD-SWESF-FVSVRKAITVLF 304 Score = 40.7 bits (95), Expect = 4e-04 Identities = 53/347 (15%), Positives = 88/347 (25%), Gaps = 162/347 (46%) Query: 10 LLPDFDEDRHDVIMRAHQANVLKMIAIAIKV--KDFV-------PLIKLCQ--DYPSSIF 58 L+ D + N+L+ + KD++ PLI + Q Y + Sbjct: 198 LIRT-TLDAEK--VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY--VVT 252 Query: 59 CSV-GTHPC-----------HAH-----------------EENEVLVDELV------CLA 83 + G P H+ + ++ C Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312 Query: 84 SHPRV----------VAIGE---------TGLDRYH--------NAHTIEEQKVVFLRHI 116 ++P + E + L + N+H + + Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG------KQV 366 Query: 117 EAS-----R---ITGIP-----LVIHSR----SADDDMAAILQEEMKKGPF--------- 150 E S + ++G P L + R + D + I PF Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI--------PFSERKLKFSN 418 Query: 151 -------PFVIHCFSSSQKLAD----ICLELGGY-ISFTG-MITFPKYDA-----LRA-- 190 PF H S L I +L +SF I P YD LR Sbjct: 419 RFLPVASPF--H----SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472 Query: 191 ---IARGIPM---DRV----LVETDSPYIV---P--VSCQG---KRN 219 R + V + + +I+ P S G RN Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519 Score = 32.2 bits (73), Expect = 0.13 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 12/57 (21%) Query: 9 LLLPDFD-EDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTH 64 + +P +D D D +R ++ + I I I+L + ++ TH Sbjct: 455 IQIPVYDTFDGSD--LRVLSGSISERIVDCI--------IRLPVKWETTTQFKA-TH 500 >3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824} Length = 272 Score = 39.3 bits (90), Expect = 8e-04 Identities = 32/285 (11%), Positives = 57/285 (20%), Gaps = 56/285 (19%) Query: 1 MLIDTHCHLLLPD-------------------------FDEDRHDVIMRAHQANVLKMIA 35 ++ID H H++LP + DV + N + Sbjct: 3 LIIDGHTHVILPVEKHIKIMDEAGVDKTILFSTSIHPETAVNLRDVKKEMKKLNDVVNGK 62 Query: 36 IAIKVKDFVP----LIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAI 91 + L + Q YPS VG + + Sbjct: 63 TNSMIDVRRNSIKELTNVIQAYPSRY---VGFGNVPVGLSENDTNSYIEENIVNN----- 114 Query: 92 GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMA--AILQEEMKKGP 149 L Q + S +G + + + E K P Sbjct: 115 ---KLVGIGELTPASGQIKSLKPIFKYSMDSGSLPIWIHAFNPLVLQDIKEIAELCKAFP 171 Query: 150 FPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYI 209 VI + + + I + + TD P+ Sbjct: 172 KVPVILGHMGGSNWMTAVELAKEIQNLYLDTSAYFSTFVLKIVINELPLKCIFGTDMPFG 231 Query: 210 VPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254 + K+ N +L Sbjct: 232 DL--------------QLSIEAIKKMSNDSYVANAVLGDNISRLL 262 >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* Length = 390 Score = 34.7 bits (78), Expect = 0.025 Identities = 42/277 (15%), Positives = 72/277 (25%), Gaps = 24/277 (8%) Query: 2 LIDTHCHLLLPDFDEDRHDV--------IMRAHQANVLKMIAIAIKVKDFVPLIKLCQDY 53 ID H HL+ + + A +V+ ++ + L+ + Sbjct: 64 FIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRAL 123 Query: 54 PSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEE--QKVV 111 + + + +A RV+ + D A + Sbjct: 124 NEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIGVKCAISDHRSAAPDVYHLANMAA 183 Query: 112 FLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKG-----PFPFVIHCFSSSQKLADI 166 R V H + + I P ++ + A Sbjct: 184 ESRVGGLLGGKPGVTVFHMGDSKKALQPIYDLLENCDVPISKLLPTHVNRNVPLFEQALE 243 Query: 167 CLELGGYISFTGMITFP---KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAY 223 GG I T I P RA+ GIP+ RV + +D P Sbjct: 244 FARKGGTIDITSSIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLTHIG 303 Query: 224 VV------NTAKALAKEKDVSYEDLMEETTKNALKLF 254 V T + L K+ D S D + T + Sbjct: 304 VAGFETLLETVQVLVKDYDFSISDALRPLTSSVAGFL 340 >2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, tryptophan-NDA metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum WCFS1} SCOP: c.1.9.15 Length = 307 Score = 32.8 bits (73), Expect = 0.092 Identities = 25/204 (12%), Positives = 52/204 (25%), Gaps = 19/204 (9%) Query: 53 YPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVF 112 P++ P + L +A HP AI +D + Sbjct: 123 VPTNSRGLYFGSPVL-ERVYQELDARQAIVALHPNEPAILPKNVDIDLPVPLLG------ 175 Query: 113 LRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGG 172 ++ + L H ++ I+ + + ++ Sbjct: 176 -FFMDTTMTFINMLKYHFFEKYPNIKVIIPHAGAFLGIVDDRIAQYAQKVYQVDVYDVMH 234 Query: 173 YISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALA 232 ++ F L + + +L +D PY ALA Sbjct: 235 HVYFDVAGAVLP-RQLPTLMSLAQPEHLLYGSDIPYT----------PLDGSRQLGHALA 283 Query: 233 KEKDVSYEDLMEETTKNALKLFSK 256 ++ E NA +L ++ Sbjct: 284 TTDLLTNEQKQAIFYDNAHRLLTE 307 >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 Length = 457 Score = 32.1 bits (71), Expect = 0.14 Identities = 22/157 (14%), Positives = 39/157 (24%) Query: 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSV 61 ID H H+ F+ D A A + L + + Sbjct: 53 GIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAG 112 Query: 62 GTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRI 121 G VL + + +G T + + V L + Sbjct: 113 GKSAIDYGYHIIVLDPTDSVIEELEVLPDLGITSFKVFMAYRGMNMIDDVTLLKTLDKAV 172 Query: 122 TGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFS 158 LV+ D + + + +G + H S Sbjct: 173 KTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALS 209 >2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural genomics, PSI, protein structure initiative; 1.80A {Rhodopseudomonas palustris CGA009} SCOP: c.1.9.15 Length = 350 Score = 31.8 bits (70), Expect = 0.15 Identities = 29/243 (11%), Positives = 65/243 (26%), Gaps = 34/243 (13%) Query: 46 LIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTI 105 ++ Q +P F P + + + EL VAI + + Sbjct: 96 CYRVSQLFPD-NFIGAAMLPQSPGVDPKTCIPELEKCVKEYGFVAINLNPDPSGGHWTSP 154 Query: 106 EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHC-----FSSS 160 ++ E IP +IH ++ + + C F Sbjct: 155 PLTDRIWYPIYEKMVELEIPAMIHVSTSCNTCFHTTGAHYLNADTTAFMQCVAGDLFKDF 214 Query: 161 QKLADICLELGGYISFTGMITFPKYD-------------------------ALRAIARGI 195 +L + GG + + + + I Sbjct: 215 PELKFVIPHGGGAVPYHWGRFRGLAQEMKKPLLEDHVLNNIFFDTCVYHQPGIDLLNTVI 274 Query: 196 PMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255 P+D VL ++ Y +T + + ++ E+ + NA +++ Sbjct: 275 PVDNVLFASEMIG---AVRGIDPRTGFYYDDTKRYIEASTILTPEEKQQIYEGNARRVYP 331 Query: 256 KIS 258 ++ Sbjct: 332 RLD 334 >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrolase, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens str} Length = 417 Score = 31.3 bits (69), Expect = 0.21 Identities = 27/262 (10%), Positives = 64/262 (24%), Gaps = 10/262 (3%) Query: 2 LIDTHCHLLLP-DFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60 +D H H+ R L A + + + I Sbjct: 73 WVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAF 132 Query: 61 VGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVV-------FL 113 + N V + R++ + + Sbjct: 133 LNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRASHVITGSWGVTPVK 192 Query: 114 RHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGY 173 + ++I +P+++H +L+ + G S + + Sbjct: 193 LGKKIAKILKVPMMVHVGEPPALYDEVLE-ILGPGDVVTHCFNGKSGSSIMEDEDLFNLA 251 Query: 174 ISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPV-SCQGKRNEPAYVVNTAKALA 232 G A + + P+ + N P + + T + Sbjct: 252 ERCAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLATTMSKL 311 Query: 233 KEKDVSYEDLMEETTKNALKLF 254 D+ +E+++E T+N + Sbjct: 312 LSVDMPFENVVEAVTRNPASVI 333 >1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme, temperature dependent structural changes, hydrolase; HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2 PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C* 1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C ... Length = 567 Score = 30.8 bits (69), Expect = 0.35 Identities = 29/209 (13%), Positives = 50/209 (23%), Gaps = 16/209 (7%) Query: 2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFC 59 IDTH H + P + V A I S+ Sbjct: 130 GIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPV 189 Query: 60 SVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEAS 119 ++G + + VA G GL + + + + Sbjct: 190 NIGLLGKGNVSQ----------PDALREQVAAGVIGLKIHEDWGATPA---AIDCALTVA 236 Query: 120 RITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGM 179 I + +HS + ++ G H + A + + + Sbjct: 237 DEMDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPS 296 Query: 180 ITFPKYD-ALRAIARGIPMDRVLVETDSP 207 T P L I + M V D Sbjct: 297 STNPTLPYTLNTIDEHLDMLMVCHHLDPD 325 >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} Length = 608 Score = 29.8 bits (66), Expect = 0.59 Identities = 36/264 (13%), Positives = 61/264 (23%), Gaps = 31/264 (11%) Query: 2 LIDTHCHLLLPDFDEDRHDVIMRAHQAN----VLKM---IAIAIKVKDFVPLIKLCQDYP 54 LIDTH H+ + A A ++ V K ++ P Sbjct: 91 LIDTHMHI---ESSMITPAAYAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLP 147 Query: 55 SSIF----CSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKV 110 V + P + L L S P + I E N + E+ Sbjct: 148 LRAILLAPSCVPSAPGLERGGADFDAAILADLLSWPEIGGIAE-----IMNMRGVIERDP 202 Query: 111 VFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL 170 ++A + H+R + H S + L Sbjct: 203 RMSGIVQAGLAAEKLVCGHARGLKNAD-----LNAFMAAGVSSDHELVSGEDLMAKLRAG 257 Query: 171 GGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKA 230 G V + TD + + G ++ Sbjct: 258 LTIELRGSHDHLLPEFVAALNTLGHLPQTVTLCTDDVFPDDLLQGGGLDD-------VVR 310 Query: 231 LAKEKDVSYEDLMEETTKNALKLF 254 + E + T NA + Sbjct: 311 RLVRYGLKPEWALRAATLNAAQRL 334 >3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962, cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii} Length = 482 Score = 29.4 bits (66), Expect = 0.81 Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 14/64 (21%) Query: 184 KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNE--PAYVVNTAKALAKEKDVSYED 241 + I + R L+ T + + P+ + K +AKE + + Sbjct: 159 HRKRVTDWLTTIYLIRDLINTPA------------EDMGPSELAQAVKHVAKEFEAKVKI 206 Query: 242 LMEE 245 + + Sbjct: 207 IESK 210 >1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A* Length = 252 Score = 29.1 bits (64), Expect = 1.0 Identities = 5/126 (3%), Positives = 28/126 (22%) Query: 32 KMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAI 91 + + + +++P SV H V+ + + + Sbjct: 41 NIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNG 100 Query: 92 GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFP 151 ++ + + + + ++ + ++ Sbjct: 101 YYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLK 160 Query: 152 FVIHCF 157 + + Sbjct: 161 VIKNLT 166 >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 Length = 376 Score = 28.6 bits (62), Expect = 1.7 Identities = 12/103 (11%), Positives = 26/103 (25%), Gaps = 1/103 (0%) Query: 2 LIDTHCHLLLP-DFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60 +D H H ++ D + + + + ++ + I + Sbjct: 57 FVDPHIHGVVGADTMNCDFSEMEEFLYSQGVTTFLATTVSTSLEKMKEILRKARDYILEN 116 Query: 61 VGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAH 103 T H E + E S + E L + Sbjct: 117 PSTSLLGVHLEGPYISKEKKGAHSEKHIRPPSERELSEIDSPA 159 >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* Length = 458 Score = 28.4 bits (61), Expect = 1.8 Identities = 20/154 (12%), Positives = 41/154 (26%) Query: 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSV 61 ID H H+ LP D +A ++ I++ + Y + Sbjct: 54 FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAE 113 Query: 62 GTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRI 121 G C V + +VA G + + + + Sbjct: 114 GNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFKIFLSYKNFFGVDDGEMYQTLRLAK 173 Query: 122 TGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIH 155 +V + + + Q+ + +G H Sbjct: 174 ELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWH 207 >3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus} Length = 312 Score = 27.8 bits (60), Expect = 2.7 Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 12/107 (11%) Query: 148 GPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSP 207 PF Y+ + P AL+ +D VL TD+P Sbjct: 209 AMVPFFSGRIDHILDEKHAQDFKKFYVDTAILGNTP---ALQLAIDYYGIDHVLFGTDAP 265 Query: 208 YIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254 + V P+ + +S +D + N L Sbjct: 266 FAVM---------PSGADQIITQAINDLTISDKDKQKIFHDNYYSLI 303 >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} Length = 386 Score = 27.1 bits (58), Expect = 3.5 Identities = 24/259 (9%), Positives = 59/259 (22%), Gaps = 9/259 (3%) Query: 2 LIDTHCHLLLPDFDEDR------HDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPS 55 L+DTH H+ D+ + + + K S Sbjct: 63 LLDTHVHVSGGDYAPRQKTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTKALAITLS 122 Query: 56 SIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRH 115 + + H +L L + E Sbjct: 123 KSYYNARPAGVKVHGGAVILEKGLTEEDFIEMKKEGVWIVGEVGLGTIKNPED---AAPM 179 Query: 116 IEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYIS 175 +E + G + +H+ ++ + + P V+ + + Sbjct: 180 VEWAHKHGFKVQMHTGGTSIPGSSTVTADDVIKTKPDVVSHINGGPTAISVQEVDRIMDE 239 Query: 176 FTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEK 235 + + + + + G P ++ +A Sbjct: 240 TDFAMEIVQCGNPKIADYVARRAAEKGQLGRVIFGNDAPSGTGLIPLGILRNMCQIASMS 299 Query: 236 DVSYEDLMEETTKNALKLF 254 D+ E + T N+ ++ Sbjct: 300 DIDPEVAVCMATGNSTAVY 318 >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} Length = 468 Score = 27.3 bits (59), Expect = 3.6 Identities = 18/175 (10%), Positives = 41/175 (23%), Gaps = 5/175 (2%) Query: 2 LIDTHCHLLLPDF-----DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSS 56 ++ H H + F D + + + + I ++ Sbjct: 88 WVNAHGHAAMSLFRGLADDLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTT 147 Query: 57 IFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHI 116 F + +P + E VC A D Y + Sbjct: 148 TFADMYFYPQQSGEAALAAGIRAVCFAPVLDFPTNYAQNADEYIRKAIECNDRFNNHPMN 207 Query: 117 EASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELG 171 E + + D+ + + P IH + ++++ Sbjct: 208 EQGLVQIGFGPHAPYTVSDEPLKEITMLSDQLDMPVQIHLHETDFEVSESLETFN 262 >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Length = 534 Score = 27.1 bits (58), Expect = 3.9 Identities = 25/200 (12%), Positives = 48/200 (24%), Gaps = 6/200 (3%) Query: 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSV 61 D+H HL + D+ V M + +VK I + Sbjct: 97 FFDSHLHLDELGMSLEMVDL------RGVKSMEELVERVKKGRGRIIFGFGWDQDELGRW 150 Query: 62 GTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRI 121 T + V + + I L + I Sbjct: 151 PTREDLDVIDRPVFLYRRCFHVAVMNSKMIDLLNLKPSKDFDESTGIVRERALEESRKII 210 Query: 122 TGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMIT 181 L + + A + F+ + + L ++ E ++ ++ Sbjct: 211 NEKILTVKDYKHYIESAQEHLLSLGVHSVGFMSVGEKALKALFELEREGRLKMNVFAYLS 270 Query: 182 FPKYDALRAIARGIPMDRVL 201 D L + G R L Sbjct: 271 PELLDKLEELNLGKFEGRRL 290 >2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens} Length = 336 Score = 27.1 bits (58), Expect = 4.0 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 12/69 (17%) Query: 186 DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEE 245 +L+ + I D+V++ TD P+ P + K + ++ E + Sbjct: 272 LSLKLLTDVIGKDKVILGTDYPF------------PLGELEPGKLIESMEEFDEETKNKL 319 Query: 246 TTKNALKLF 254 NAL Sbjct: 320 KAGNALAFL 328 Score = 26.3 bits (56), Expect = 6.5 Identities = 6/16 (37%), Positives = 10/16 (62%) Query: 1 MLIDTHCHLLLPDFDE 16 M ID H H+L ++ + Sbjct: 1 MKIDIHSHILPKEWPD 16 >2hc9_A Leucine aminopeptidase 1; zinc, carbonate, structural genomics, PSI, protein structure initiative; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A Length = 491 Score = 26.9 bits (59), Expect = 4.8 Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 14/61 (22%) Query: 187 ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNE--PAYVVNTAKALAKEKDVSYEDLME 244 L ++ + L++T + N +V+ A + + Sbjct: 162 FLTDLSESVRETARLIDTPA------------NILTTDALVDEAVKVGNATGSKITVIRG 209 Query: 245 E 245 E Sbjct: 210 E 210 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.9 bits (58), Expect = 4.8 Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 7/23 (30%) Query: 23 MRAHQANVLKMIA------IAIK 39 ++ QA+ LK+ A +AIK Sbjct: 22 LKKLQAS-LKLYADDSAPALAIK 43 >1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genomics, JCSG, PSI, protein structure initiative; 2.00A {Thermotoga maritima} SCOP: c.82.1.1 Length = 427 Score = 26.7 bits (58), Expect = 5.1 Identities = 8/106 (7%), Positives = 19/106 (17%), Gaps = 6/106 (5%) Query: 35 AIAIKVKDFVPLIK-LCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGE 93 I ++ ++ + +++ Sbjct: 153 TILLRGGSDALNSNKAIVSAIREALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVI 212 Query: 94 TGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAA 139 + + V L G + SAD A Sbjct: 213 PRGGYGLISFVRDNATVPVLETGV-----GNCHIFVDESADLKKAV 253 >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* Length = 480 Score = 26.8 bits (57), Expect = 5.4 Identities = 14/160 (8%), Positives = 33/160 (20%), Gaps = 4/160 (2%) Query: 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKM----IAIAIKVKDFVPLIKLCQDYPSSI 57 ID H H L ++ V+ A + Sbjct: 62 FIDVHGHDDLMFVEKPDLRWKTSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLF 121 Query: 58 FCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIE 117 + + V LV A+ +++ L Sbjct: 122 ADVPAYFAALDAQRPMINVAALVGHANLRLAAMRDPQAAPTAAEQQAMQDMLQAALEAGA 181 Query: 118 ASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCF 157 TG+ + + ++ + + ++ Sbjct: 182 VGFSTGLAYQPGAVAQAAELEGLARVAAERRRLHTSHIRN 221 >2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putative; TIM-barrel protein., structural genomics, PSI, protein structure initiative; 2.61A {Pseudomonas putida KT2440} SCOP: c.1.9.15 Length = 288 Score = 26.6 bits (57), Expect = 5.5 Identities = 27/225 (12%), Positives = 61/225 (27%), Gaps = 19/225 (8%) Query: 3 IDTHCHL------------LLPDFDEDRHDVIMRAHQANVLKMIAI--AIKVKDFVPLIK 48 ID+H H+ P++D D + + + + + D L+ Sbjct: 15 IDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFLGTDNRYLLS 74 Query: 49 LCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYH--NAHTIE 106 Q P + V + V + I Sbjct: 75 ALQTVPGQLRGVVMLERDVEQATLAEMARLGVRGVRLNLMGQDMPDLTGAQWRPLLERIG 134 Query: 107 EQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADI 166 EQ H + + I + + D + + + ++G + + Sbjct: 135 EQGWHVELHRQVADIPVLVRALQPYGLDIVIDHFGRPDARRGLGQPGFAELLTLSGRGKV 194 Query: 167 CLELGGYISFTGMITFPKYDALRAIARGIPM---DRVLVETDSPY 208 +++ G G A +A+ +R++ +D P+ Sbjct: 195 WVKVSGIYRLQGSPEENLAFARQALCALEAHYGAERLMWGSDWPH 239 >3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TIM-barrel protein; HET: GOL; 1.76A {Bordetella bronchiseptica} Length = 291 Score = 26.4 bits (57), Expect = 6.1 Identities = 20/173 (11%), Positives = 41/173 (23%), Gaps = 12/173 (6%) Query: 46 LIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTI 105 + + + YP E + L R+V + + Sbjct: 82 VAAVAKAYPDKFHPVGSIEA---ATRKEAMAQMQEILDLGIRIVNLEPGVWATPMHVD-- 136 Query: 106 EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAI--LQEEMKKGPFPFVIHCFSSSQKL 163 + + E + I I + + D + + P V+ + + Sbjct: 137 DRRLYPLYAFCEDNGIPVIMMTGGNAGPDITYTNPEHIDRVLGDFPDLTVVSSHGNWPWV 196 Query: 164 ADICLELGGY-----ISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVP 211 +I + P + A DR+L T P Sbjct: 197 QEIIHVAFRRPNLYLSPDMYLYNLPGHADFIQAANSFLADRMLFGTAYPMCPL 249 >1e9y_B Urease beta subunit; hydrolase, dodecamer, acetohydroxamic acid; HET: KCX; 3.0A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* Length = 569 Score = 26.2 bits (57), Expect = 6.8 Identities = 23/199 (11%), Positives = 48/199 (24%), Gaps = 16/199 (8%) Query: 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIA--IAIKVKDFVPLIKLCQDYPSSIFC 59 IDTH H + P + A + +K Sbjct: 132 GIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSM 191 Query: 60 SVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEAS 119 ++G + L D++ E G + ++ + Sbjct: 192 NLGFLAKGNASNDASLADQI-------------EAGAIGFKIHEDWGTTPSAINHALDVA 238 Query: 120 RITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGM 179 + + IH+ + ++ G H + A +++ G + Sbjct: 239 DKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPA 298 Query: 180 ITFPKYDALR-AIARGIPM 197 T P A + M Sbjct: 299 STNPTIPFTVNTEAEHMDM 317 >1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, zinc, metallo- enzyme, structure 2 function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A Length = 245 Score = 26.5 bits (57), Expect = 6.8 Identities = 22/226 (9%), Positives = 56/226 (24%), Gaps = 22/226 (9%) Query: 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAI--------AIKVKDFVPLIKLCQD 52 +D H H + + + +K+ AI +++ Sbjct: 2 YPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDMEDAPHHWHFINMRIWPR 61 Query: 53 YPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHT-------I 105 + G + + E+ + + + E + A I Sbjct: 62 VVDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLIIAGFHEPVFAPHDKATNTQAMIATI 121 Query: 106 EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLAD 165 V + H + + +A +A E + +++A Sbjct: 122 ASGNVHIISHPGNPKYEIDVKAVAEAAAKHQVAL---EINNSSFLHSRKGSEDNCREVAA 178 Query: 166 ICLELGGYISFTGMITFPK----YDALRAIARGIPMDRVLVETDSP 207 + GG+++ ++ I + + SP Sbjct: 179 AVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPERILNVSP 224 >1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.85A {Thermotoga maritima} SCOP: c.1.9.8 Length = 463 Score = 26.0 bits (57), Expect = 8.1 Identities = 6/18 (33%), Positives = 10/18 (55%) Query: 2 LIDTHCHLLLPDFDEDRH 19 ++D H HL D E++ Sbjct: 38 IVDPHNHLDAKDIVENKP 55 >3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* Length = 528 Score = 26.1 bits (57), Expect = 8.3 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 10/57 (17%) Query: 189 RAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEE 245 R G L+ S Y P + N A LA++ ++ Y+ L + Sbjct: 202 RVYYFGTYYASQLIAAPSNYCNP----------VSLSNAAVELAQKLNLEYKILGVK 248 >1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A Length = 883 Score = 25.9 bits (56), Expect = 9.1 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Query: 60 SVGTHPCHAHEENEVLVDELVCL-ASHPRVVAIGETGLDRYHNAHTIEEQKV 110 S GT P A + + + +V S + + D+ H + + + Sbjct: 813 SFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPAL 864 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.137 0.409 Gapped Lambda K H 0.267 0.0432 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,318,508 Number of extensions: 107546 Number of successful extensions: 584 Number of sequences better than 10.0: 1 Number of HSP's gapped: 521 Number of HSP's successfully gapped: 72 Length of query: 262 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 171 Effective length of database: 3,487,026 Effective search space: 596281446 Effective search space used: 596281446 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 56 (26.1 bits)