RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780215|ref|YP_003064628.1| hypothetical protein
CLIBASIA_00500 [Candidatus Liberibacter asiaticus str. psy62]
         (262 letters)



>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
           PSI, protein structure initiative, joint center for
           structural genomics; 1.80A {Thermotoga maritima} SCOP:
           c.1.9.12
          Length = 268

 Score =  226 bits (576), Expect = 5e-60
 Identities = 90/258 (34%), Positives = 143/258 (55%), Gaps = 2/258 (0%)

Query: 2   LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSV 61
           ++DTH HL    FD+DR+ VI    + N+  ++ + + ++D    + L +     IFCSV
Sbjct: 13  MVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDR-IFCSV 71

Query: 62  GTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRI 121
           G HP  A E  E  ++ L   A   +VVAIGETGLD + N    E QK VF+  IE +  
Sbjct: 72  GVHPHDAKEVPEDFIEHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGK 131

Query: 122 TGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMIT 181
             +PLV+H R A  +   IL+ E        VIH FSS  + A   ++LG  +   G +T
Sbjct: 132 LNLPLVVHIRDAYSEAYEILRTE-SLPEKRGVIHAFSSDYEWAKKFIDLGFLLGIGGPVT 190

Query: 182 FPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYED 241
           +PK +ALR + + + ++ +++ETD P++ P   +GKRNEP Y+    + +++   V    
Sbjct: 191 YPKNEALREVVKRVGLEYIVLETDCPFLPPQPFRGKRNEPKYLKYVVETISQVLGVPEAK 250

Query: 242 LMEETTKNALKLFSKISE 259
           + E TT+NA ++F ++ E
Sbjct: 251 VDEATTENARRIFLEVKE 268


>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
          Length = 301

 Score =  211 bits (537), Expect = 2e-55
 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 43/295 (14%)

Query: 2   LIDTHCHLLLPDF----------DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQ 51
            ID   +L  P F           +D  DVI RA +  V K +     ++D    + L Q
Sbjct: 3   FIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQ 62

Query: 52  DYPSSIFCSVGTHPCHAHE----ENEVLVDELVCLA--SHPRVVAIGETGLDRYHNAH-T 104
                 F +VG HP    E      ++ + EL+ LA  +  +VVAIGE GLD        
Sbjct: 63  TNGM-FFSTVGCHPTRCGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCP 121

Query: 105 IEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLA 164
            + Q   F +  E S  T +P+ +H R++  +   I +    +     V+H F  +++ A
Sbjct: 122 KDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDITKRNRDR-CVGGVVHSFDGTKEAA 180

Query: 165 DICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGK------- 217
              ++L  YI F G     + +    + + IP +++++ETD+P+    S           
Sbjct: 181 AALIDLDLYIGFNGCSLKTEAN--LEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTA 238

Query: 218 ---------------RNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKI 257
                          RNEP +++   + ++  +D    +L      N +K+F  +
Sbjct: 239 FPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYNNTIKVFFPV 293


>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
           structure initiative; 1.50A {Saccharomyces cerevisiae
           YJM789}
          Length = 401

 Score =  174 bits (441), Expect = 2e-44
 Identities = 68/379 (17%), Positives = 110/379 (29%), Gaps = 126/379 (33%)

Query: 2   LIDTHCHLLLPDF----------DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQ 51
             D   +L  P F            D   ++ RA Q +V   +     + +    I+L  
Sbjct: 14  YYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIELVS 73

Query: 52  DY----PSSIFCSVGTHPCHAHEENEVLVDELVC-------------------------- 81
                 P  ++ ++G HPC  +E  +    +                             
Sbjct: 74  SVKDLSPLKLYHTIGVHPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVISNPSF 133

Query: 82  ----------------LASHPRVVAIGETGLDRYH-NAHTIEEQKVVFLRHIEASRITG- 123
                                   +IGE GLD    +  + E QKV F   ++ S +   
Sbjct: 134 AQGKLKELYDLMNQQAKPHDTSFRSIGEIGLDYDRFHYSSKEMQKVFFEEQLKISCLNDK 193

Query: 124 ---IPLVIHSRSADDDMAAILQEEM-------------------------KKGPFPFVIH 155
               PL +H RSA DD   IL+  +                                V+H
Sbjct: 194 LSSYPLFLHMRSACDDFVQILERFVVGFTDEKDTFQLQKLGASSSSGFYKFHPDRKLVVH 253

Query: 156 CFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQ 215
            F+ S       L L   I         + +   A+ + IP +R+L+ETD+P+       
Sbjct: 254 SFTGSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCEIKRTH 313

Query: 216 GK----------------------------------------RNEPAYVVNTAKALAKEK 235
                                                     RNEP  +   A  +++ K
Sbjct: 314 ASFQYLAKYQEVRDFEYPAFKSVKKNKLADKLNAEELYMVKGRNEPCNMEQVAIVVSEVK 373

Query: 236 DVSYEDLMEETTKNALKLF 254
           DV    L++ T K   K+F
Sbjct: 374 DVDLATLIDTTWKTTCKIF 392


>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
           structural genomics, PSI, protein structure initiative;
           2.20A {Staphylococcus aureus subsp}
          Length = 265

 Score =  164 bits (414), Expect = 2e-41
 Identities = 93/255 (36%), Positives = 143/255 (56%), Gaps = 1/255 (0%)

Query: 1   MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60
           MLIDTH HL    +D+D  +VI RA +A V +M  +          +KL  +Y   ++  
Sbjct: 1   MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDF-LYGI 59

Query: 61  VGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASR 120
           +G HP  A +  E  ++ +  LA HP+V+ IGE GLD + +    + QK VF + I  ++
Sbjct: 60  IGWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAK 119

Query: 121 ITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMI 180
              +P++IH+R A  D   IL EE  +     +     S +    +  +L  YIS  G +
Sbjct: 120 RLKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPV 179

Query: 181 TFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYE 240
           TF      + +A+ + M+R+LVETD+PY+ P   +GKRNEPA V   A+ +A+ K +SYE
Sbjct: 180 TFKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYE 239

Query: 241 DLMEETTKNALKLFS 255
           ++ E+TTKNA KLF+
Sbjct: 240 EVCEQTTKNAEKLFN 254


>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
           structural genomics, PSI, protein structure initiative;
           2.00A {Escherichia coli} SCOP: c.1.9.12
          Length = 264

 Score =  163 bits (413), Expect = 3e-41
 Identities = 74/260 (28%), Positives = 126/260 (48%), Gaps = 7/260 (2%)

Query: 1   MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60
            + D   +L    F +DR DV+  A  A V  ++     +++     KL + Y S  + +
Sbjct: 4   RMFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSS-CWST 62

Query: 61  VGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASR 120
            G HP  + +      + ++ LA+ P VVAIGE GLD   N  T EEQ+  F+  +  + 
Sbjct: 63  AGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAA 122

Query: 121 ITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMI 180
              +P+ +H R A +    +L+  + K P   V+HCF+ +++    C+  G YI  TG +
Sbjct: 123 DLNMPVFMHCRDAHERFMTLLEPWLDKLPG-AVLHCFTGTREEMQACVAHGIYIGITGWV 181

Query: 181 TFPKY-DALRAIARGIPMDRVLVETDSPYIVPVSCQ----GKRNEPAYVVNTAKALAKEK 235
              +    LR +   IP +++L+ETD+PY++P         +RNEPA++ +  + +A  +
Sbjct: 182 CDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWR 241

Query: 236 DVSYEDLMEETTKNALKLFS 255
                 L   T  N   LF 
Sbjct: 242 GEDAAWLAATTDANVKTLFG 261


>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX research
           center for structural genomics, NYSGXRC, structural
           genomics, PSI; 1.90A {Escherichia coli K12} SCOP:
           c.1.9.12
          Length = 265

 Score =  162 bits (410), Expect = 8e-41
 Identities = 91/258 (35%), Positives = 141/258 (54%), Gaps = 7/258 (2%)

Query: 1   MLIDTHCHLLLPDFD---EDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSI 57
            L+D+HCHL   D++   +D  DV+ +A   +V   +A+A  +  ++ +  L  +  + +
Sbjct: 2   FLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNVV 61

Query: 58  FCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIE 117
           F             +   +  L        VVA+GETGLD Y+   T   Q+  F+ HI+
Sbjct: 62  FSCGVHPLNQNDPYDVEDLRRLAA---EEGVVALGETGLDYYYTPETKVRQQESFIHHIQ 118

Query: 118 ASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT 177
             R    P+++H+R A  D  AI   E K      V+HCF+  ++ A   L+LG YISF+
Sbjct: 119 IGRELNKPVIVHTRDARADTLAI-LREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFS 177

Query: 178 GMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDV 237
           G++TF   + LR  AR +P+DR+LVETDSPY+ PV  +GK N+PA V + A+ +A  K V
Sbjct: 178 GIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGV 237

Query: 238 SYEDLMEETTKNALKLFS 255
           + E+L + TT N  +LF 
Sbjct: 238 AVEELAQVTTDNFARLFH 255


>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
           genomics center for infectious disease, dysentery, liver
           abcess; 1.95A {Entamoeba histolytica hm-1}
          Length = 325

 Score =  158 bits (400), Expect = 1e-39
 Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 46/296 (15%)

Query: 2   LIDTHCHLLLPDF----------DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQ 51
            ID   +L   ++          +ED   V+ RA +  +  +I  +  + DF   I++  
Sbjct: 28  FIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIEIIN 87

Query: 52  DYP----SSIFCSVGTHPCHAHEENEVLVDE---LVCLASHPRVVAIGETGLDRYH--NA 102
            Y       +  ++G HP   +E  +    +   L+C  +  +VVAIGE GLD      +
Sbjct: 88  KYQNLTNIKLVTTIGVHPTRTNELKQEGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFS 147

Query: 103 HTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQK 162
               +        I   +   +P   H R +  D+  +  +E+       V+HCF  +++
Sbjct: 148 DKETQLSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQL-NKELGYNGCKGVVHCFDGTEE 206

Query: 163 LADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPV---------- 212
             +  L  G  I  TG     +   L  + + IP++R+ +ETD PY              
Sbjct: 207 EMNQILNEGWDIGVTGN--SLQSIELLNVMKQIPIERLHIETDCPYCGIKKTSAGFKYLK 264

Query: 213 --------------SCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254
                             +RNEP+ +++ A  ++  K +S  + + +   N++ ++
Sbjct: 265 EKDFGVKVEKYQRNKYVQRRNEPSNIIDIAIIMSSIKHISLFEFVNKVYSNSMNMY 320


>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
           genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
           c.1.9.12
          Length = 259

 Score =  154 bits (390), Expect = 2e-38
 Identities = 71/257 (27%), Positives = 128/257 (49%), Gaps = 5/257 (1%)

Query: 1   MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60
             IDTHCH   P F  D    + RA QA V K+I  A + ++F  ++ L ++Y   ++ +
Sbjct: 4   RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQP-LYAA 62

Query: 61  VGTHPCHAHEENEVLVDELVCL--ASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEA 118
           +G HP    + ++V +++L         +VVA+GE GLD + +    E Q+ +    ++ 
Sbjct: 63  LGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKL 122

Query: 119 SRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTG 178
           ++   +P+++HSR   D +A  L+      P   V+H FS S + A+  ++LG  I   G
Sbjct: 123 AKRYDLPVILHSRRTHDKLAMHLKRHDL--PRTGVVHGFSGSLQQAERFVQLGYKIGVGG 180

Query: 179 MITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVS 238
            IT+P+    R +   +P+  +L+ETD+P +     QG+ N P         L + +   
Sbjct: 181 TITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRREP 240

Query: 239 YEDLMEETTKNALKLFS 255
            +++ +    N   LF+
Sbjct: 241 ADEIAQALLNNTYTLFN 257


>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A
           {Escherichia coli} SCOP: c.1.9.3
          Length = 291

 Score =  143 bits (362), Expect = 3e-35
 Identities = 38/288 (13%), Positives = 80/288 (27%), Gaps = 39/288 (13%)

Query: 2   LIDTHCHLL--LPDFDEDRHDVI----------MRAHQANVLKMIAIAIKV--KDFVPLI 47
               H HL   L  F  +    +                 V  +I +  +   ++   ++
Sbjct: 7   YTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFML 66

Query: 48  KLCQDYPSSIFCS----------VGTHPCHAHEENEVLVDELVCLASHP--RVVAIGETG 95
            + ++   ++                      E  + +VDE+         +   I E G
Sbjct: 67  DVMRETGINVVACTGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIG 126

Query: 96  LDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMA---AILQEEMKKGPFPF 152
                     E+   VF+    A   TG P+  H+  +   +     +    +       
Sbjct: 127 TSEGKITPLEEK---VFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTV 183

Query: 153 VIHCFSSSQKLADICLELGGYISFTGMITFPKY------DALRAIARGIPMDRVLVETDS 206
                  +       ++LG Y+ F  +     Y        L A+     ++RV++  D 
Sbjct: 184 GHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDI 243

Query: 207 PYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254
                +   G       +      L  +   S  D+     +N  + F
Sbjct: 244 TRRSHLKANGGYGYDYLLTTFIPQLR-QSGFSQADVDVMLRENPSQFF 290


>3f4c_A Organophosphorus hydrolase; alpha-beta barrel, amidohydrolase,
           binuclear metal enzyme, glycerol-bound; HET: KCX; 2.07A
           {Geobacillus stearothermophilus 10} PDB: 3f4d_A*
          Length = 332

 Score =  143 bits (361), Expect = 3e-35
 Identities = 38/307 (12%), Positives = 81/307 (26%), Gaps = 53/307 (17%)

Query: 2   LIDTHCHLLL----------------PDFDEDRHDVIMRAHQANVLKMIAIAIKV--KDF 43
               H H L                  +      +   +  +  +  ++        ++ 
Sbjct: 19  KTLIHEHFLFGYPGFQGDVTRGTFREDEALRVAVEAAEKMKRHGIQTVVDPTPNDCGRNP 78

Query: 44  VPLIKLCQDYPSSIFCSVGTHPCHAHEE--------NEVLVDELVCLASHPRVVAIGETG 95
             L ++ ++   +I C+ G +                    D++  +        I +TG
Sbjct: 79  AFLRRVAEETGLNIICATGYYYEGEGAPPYFQFRRLLGTAEDDIYDMFMAELTEGIADTG 138

Query: 96  LD------RYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQ--EEMKK 147
           +               E +K+ F     A + TG  ++ H++             E    
Sbjct: 139 IKAGVIKLASSKGRITEYEKMFFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGAD 198

Query: 148 GPFPFVIHCFSS-SQKLADICLELGGYISFTGMITFPKYD---------ALRAIARGIPM 197
                + H   +         L  G YI+F                    L A+ R    
Sbjct: 199 PKKIVIGHMCGNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYE 258

Query: 198 DRVLVETDS-------PYIVPVSCQGKRNEPAYVVNTAKALA--KEKDVSYEDLMEETTK 248
            ++++  D+       P+ +P                   +   K + +  E L +    
Sbjct: 259 KQIMLSHDTVNVWLGRPFTLPEPFAEMMKNWHVEHLFVNIIPALKNEGIRDEVLEQMFIG 318

Query: 249 NALKLFS 255
           N   LFS
Sbjct: 319 NPAALFS 325


>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown
           function, plasmid, PSI-2, protein structure initiative;
           1.50A {Deinococcus radiodurans}
          Length = 254

 Score =  140 bits (354), Expect = 3e-34
 Identities = 54/259 (20%), Positives = 94/259 (36%), Gaps = 13/259 (5%)

Query: 1   MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60
            LID H HL   D   D    + RA +   L ++++      +   + L    P  ++ +
Sbjct: 2   SLIDFHVHL---DLYPDP-VAVARACEERQLTVLSVTTTPAAWRGTLALAAGRPH-VWTA 56

Query: 61  VGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASR 120
           +G HP    E    L          P    +GE GLD   +      Q+    +HI    
Sbjct: 57  LGFHPEVVSERAADLPW---FDRYLPETRFVGEVGLDGSPSLRGTWTQQFAVFQHILRRC 113

Query: 121 ITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMI 180
                 ++   S   +   +   E        ++H +S S       + LG + S     
Sbjct: 114 EDHGGRILSIHSRRAESEVLNCLEANPRSGTPILHWYSGSVTELRRAISLGCWFSVGPT- 172

Query: 181 TFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYE 240
              +     A+ R +P DRVL ETD P++      G+   P  V +  + L+K   +   
Sbjct: 173 -MVRTQKGAALIRSMPRDRVLTETDGPFLEL---DGQAALPWDVKSVVEGLSKIWQIPAS 228

Query: 241 DLMEETTKNALKLFSKISE 259
           ++     +N  +L   + E
Sbjct: 229 EVERIVKENVSRLLGTVRE 247


>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities,
           enzyme evolution, hyperthermophilic, lactonase,
           hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus
           solfataricus} PDB: 2vc5_A*
          Length = 314

 Score =  136 bits (343), Expect = 5e-33
 Identities = 33/299 (11%), Positives = 80/299 (26%), Gaps = 49/299 (16%)

Query: 3   IDTHCHLLL---------PDFDEDRHDV------IMRAHQANVLKMIAIAIKVKDFVP-- 45
              H HL +         P    +  +       + RA Q  V  ++   +         
Sbjct: 19  TLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRF 78

Query: 46  LIKLCQDYPSSIFCSVGTHP--CHAHEENEVLVDELV---------CLASHPRVVAIGET 94
           + K+ +    ++    G +             +DE+           +          + 
Sbjct: 79  MEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKI 138

Query: 95  GLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAI----LQEEMKKGPF 150
             D        ++ + V      A++ T +P++ HS + ++          +E +  G  
Sbjct: 139 AADEPGI---TKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKI 195

Query: 151 PFVIHCFSSSQKLADICLELGGYISFTGMITFPKY------DALRAIARGIPMDRVLVET 204
                  + +        + G +I                 +    + +    D++++  
Sbjct: 196 LIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISH 255

Query: 205 DSPYIVPVSCQGKRNEP--------AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255
           D    +         +P          +        K   V+ E +     +N  K FS
Sbjct: 256 DYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314


>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
           genomics, PSI-2, protein structure initiative; 3.20A
           {Archaeoglobus fulgidus dsm 4304}
          Length = 261

 Score =  124 bits (312), Expect = 2e-29
 Identities = 44/270 (16%), Positives = 89/270 (32%), Gaps = 40/270 (14%)

Query: 1   MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPL-------------- 46
           M  D+H H     F E     +++  +  + ++ ++A                       
Sbjct: 1   MYFDSHLHSEGLGFSE-----LVKLKENGIKEVCSLAFFPVKPKYPQTMIDVFRKLTEFE 55

Query: 47  IKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIE 106
              C+     +  +VG HP     + E     ++        VA GE GL+   +     
Sbjct: 56  PLRCEAAGVKMHPAVGIHPRCIPPDYE----FVLGYLEEGEWVAFGEIGLELVTD----- 106

Query: 107 EQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEM--KKGPFPFVIHCFSSSQKLA 164
           E+  V    +E ++   +P +IH+   +   A     E+         +      + +  
Sbjct: 107 EEIEVLKSQLELAKRMDVPCIIHTPRGNKLKATRKTLEILESLDFPADLAVIDHVNFETL 166

Query: 165 DICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYV 224
           D+ LE   +I  T        +    I      +R ++ +D+ Y        +  E   V
Sbjct: 167 DMVLETEYWIGLTVQPGKLSAEDAARIVAEHGPERFMLNSDAGY--------RDVEITTV 218

Query: 225 VNTAKALAKEKDVSYEDLMEETTKNALKLF 254
              A  +   + V  E++ +   +NA K  
Sbjct: 219 AEAAVKIE--EAVGREEMEKVARENARKFL 246


>3ojg_A Phosphotriesterase; (beta/alpha)8 barrel, lactonase, hydrolase;
           HET: KCX HL4; 1.60A {Geobacillus kaustophilus} PDB:
           3f4c_A* 3f4d_A*
          Length = 330

 Score =  121 bits (305), Expect = 1e-28
 Identities = 41/307 (13%), Positives = 85/307 (27%), Gaps = 53/307 (17%)

Query: 2   LIDTHCHLL--LPDFDEDRH--------------DVIMRAHQANVLKMI--AIAIKVKDF 43
               H H L   P F  D                +   +  +  +  ++        ++ 
Sbjct: 23  KTLIHEHFLFGYPGFQGDVTRGTFREDESLRVAVEAAEKMKRHGIQTVVDPTPNDCGRNP 82

Query: 44  VPLIKLCQDYPSSIFCSVGTHP--------CHAHEENEVLVDELVCLASHPRVVAIGETG 95
             L ++ ++   +I C+ G +                    D++  +        I +TG
Sbjct: 83  AFLRRVAEETGLNIICATGYYYEGEGAPPYFQFRRLLGTAEDDIYDMFMAELTEGIADTG 142

Query: 96  LDRYHNAHTI------EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAA--ILQEEMKK 147
           +               E +K+ F     A + TG  ++ H++           L E    
Sbjct: 143 IKAGVIKLASSKGRITEYEKMFFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGAD 202

Query: 148 GPFPFVIHCFSSSQK-LADICLELGGYISFTGMITFPKYD---------ALRAIARGIPM 197
                + H   ++        L  G YI+F                    L A+ R    
Sbjct: 203 PKKIVIGHMCGNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYE 262

Query: 198 DRVLVETDS-------PYIVPVSCQGKRNEPAYVVNTAKALA--KEKDVSYEDLMEETTK 248
            ++++  ++       P+ +P                   +   K + +  E L +    
Sbjct: 263 KQIMLSHNTVNVWLGRPFTLPEPFAEMMKNWHVEHLFVNIIPALKNEGIRDEVLEQMFIG 322

Query: 249 NALKLFS 255
           N   LFS
Sbjct: 323 NPAALFS 329


>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM
           barrel, binuclear zinc, protein structure initiative II
           (PSI II); 1.80A {Rhodobacter sphaeroides 2}
          Length = 364

 Score =  114 bits (285), Expect = 3e-26
 Identities = 38/279 (13%), Positives = 81/279 (29%), Gaps = 33/279 (11%)

Query: 8   HLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIK-LCQDYPSSIFCSVGTHPC 66
           ++ L D D    +V   A       +      +      ++ +  +    +    G +  
Sbjct: 79  NIALDDLDLAIAEVKQFAAVGGRSIVDPTCRGIGRDPVKLRRISAETGVQVVMGAGYYLA 138

Query: 67  HAHEEN----------EVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHI 116
            +  E           + +V E +           G  G     +  T  E++       
Sbjct: 139 SSMPETAARLSADDIADEIVAEALEGTDGTDARI-GLIGEIGVSSDFT-AEEEKSLRGAA 196

Query: 117 EASRITGIPLVIHSRSADDD---MAAILQEEMKKGPFPFVIHCFSSSQKLADI--CLELG 171
            A   TG+PL++H          +  +++EE        + H   S           + G
Sbjct: 197 RAQVRTGLPLMVHLPGWFRLAHRVLDLVEEEGADLRHTVLCHMNPSHMDPVYQATLAQRG 256

Query: 172 GYISFTGMITFPKY--------------DALRAIARGIPMDRVLVETDSPYIVPVSCQGK 217
            ++ F  +     Y               A+  +A    +DR+L+  D    + ++  G 
Sbjct: 257 AFLEFDMIGMDFFYADQGVQCPSDDEVARAILGLADHGYLDRILLSHDVFVKMMLTRYGG 316

Query: 218 RNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256
               A+V        +   +    L      N  ++F  
Sbjct: 317 NG-YAFVTKHFLPRLRRHGLDDAALETLMVTNPRRVFDA 354


>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta
           barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB:
           2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A*
           3fdk_A* 3htw_A*
          Length = 339

 Score =  112 bits (282), Expect = 6e-26
 Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 23/223 (10%)

Query: 53  YPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVF 112
             ++ F    +      E  E++  E+    +   + A G   L    +A T   +++ F
Sbjct: 118 GATTYFKFRASLGDAESEIYEMMRTEVTEGIAGTGIRA-GVIKLASSRDAIT-PYEQLFF 175

Query: 113 LRHIEASRITGIPLVIHSRSADD--DMAAILQEEMKKGPFPFVIHCFSSSQK-LADICLE 169
                  R TG+P++ H++        A +L           + H   ++        L 
Sbjct: 176 RAAARVQRETGVPIITHTQEGQQGPQQAELLTSLGADPARIMIGHMDGNTDPAYHRETLR 235

Query: 170 LGGYISFTGMITFPKY---------DALRAIARGIPMDRVLVETDSP--YIVPVSCQGKR 218
            G  I+F  +                 L  +      DR+L+  DS   ++       + 
Sbjct: 236 HGVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDSIWHWLGRPPAIPEA 295

Query: 219 NEPA-------YVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254
             PA       ++ +      + + ++ E + + T  N  +LF
Sbjct: 296 ALPAVKDWHPLHISDDILPDLRRRGITEEQVGQMTVGNPARLF 338


>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET:
           KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A*
           1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A
           1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A*
           1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
          Length = 330

 Score =  112 bits (280), Expect = 8e-26
 Identities = 46/310 (14%), Positives = 82/310 (26%), Gaps = 55/310 (17%)

Query: 2   LIDTHCHLLL---------PDFDEDRHDVI-------MRAHQANVLKMIAIAI--KVKDF 43
              TH H+           P+F   R  +         RA  A V  ++ ++     +D 
Sbjct: 17  FTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDV 76

Query: 44  VPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGET-----GLDR 98
             L ++ +     I  + G             V+EL           I +T      +  
Sbjct: 77  SLLAEVSRAADVHIVAATGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKV 136

Query: 99  YHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAI----LQEEMKKGPFPFVI 154
                    Q++V      AS  TG+P+  H+ ++  D          E +         
Sbjct: 137 ATTGKATPFQELVLKAAARASLATGVPVTTHTAASQRDGEQQAAIFESEGLSPSRVCIGH 196

Query: 155 HCFSSSQKLADICLELGGYISFTGMITFPKY--------------------DALRAIARG 194
              +            G  I    +                            ++A+   
Sbjct: 197 SDDTDDLSYLTALAARGYLIGLDHIPYSAIGLEDNASASALLGIRSWQTRALLIKALIDQ 256

Query: 195 IPMDRVLVETDSPYIVP-----VSCQGKRNEPA---YVVNTAKALAKEKDVSYEDLMEET 246
             M ++LV  D  +        +     R  P    ++        +EK V  E L   T
Sbjct: 257 GYMKQILVSNDWTFGFSSYVTNIMDVMDRVNPDGMAFIPLRVIPFLREKGVPQETLAGIT 316

Query: 247 TKNALKLFSK 256
             N  +  S 
Sbjct: 317 VTNPARFLSP 326


>2qpx_A Predicted metal-dependent hydrolase of the TIM- barrel fold;
           YP_805737.1, putative metal-dependent hydrolase,
           structural genomics; HET: KCX MSE; 1.40A {Lactobacillus
           casei atcc 334}
          Length = 376

 Score = 79.0 bits (194), Expect = 1e-15
 Identities = 37/268 (13%), Positives = 71/268 (26%), Gaps = 31/268 (11%)

Query: 11  LPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHE 70
            P  D D+   ++      + ++   A   +DF+        +  +    V      A  
Sbjct: 108 DPILDLDQTAELVGIPVKAIYRLETHA---EDFMLEHDNFAAWWQAFSNDV----KQAKA 160

Query: 71  ENEVLVDELVC----LASHPRVVAIGETGLDRY-HNAHTIEEQKV----VFLRHIEASRI 121
              V    +      L   P  V     G D + H+       K     +          
Sbjct: 161 HGFVGFKSIAAYRVGLHLEPVNVIEAAAGFDTWKHSGEKRLTSKPLIDYMLYHVAPFIIA 220

Query: 122 TGIPLVIHSRSADDD----------MAAILQEEMKKGPFPFVIHCFSSSQKLADICLELG 171
             +PL  H    D D          M   L+   KKG    ++HC+   ++   +     
Sbjct: 221 QDMPLQFHVGYGDADTDMYLGNPLLMRDYLKAFTKKGLKVVLLHCYPYHREAGYLASVFP 280

Query: 172 GYISFTGMITF----PKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNT 227
                  ++                   P  R+L  +D+     +     R     +V  
Sbjct: 281 NLYFDISLLDNLGPSGASRVFNEAVELAPYTRILFASDASTYPEMYGLAARQFKQALVAH 340

Query: 228 AKALAKEKDVSYEDLMEE-TTKNALKLF 254
              L        +  +     + + KL+
Sbjct: 341 FNQLPFVDLAQKKAWINAICWQTSAKLY 368



 Score = 26.3 bits (57), Expect = 7.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 2  LIDTHCHLLLPDFDEDRHD 20
          L+D HCH L+     +R D
Sbjct: 14 LLDHHCHFLIDGKVPNRDD 32


>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure
           initiative, NE SGX research center for structural
           genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma
           synoviae} PDB: 3msr_A*
          Length = 363

 Score = 53.1 bits (126), Expect = 6e-08
 Identities = 37/308 (12%), Positives = 88/308 (28%), Gaps = 54/308 (17%)

Query: 2   LIDTHCHLLL---------PDFDEDRHDVIMRAHQANVLK---------MIAIAIKVKDF 43
           + D H H +           DF     D  ++  +  + +            +   V   
Sbjct: 22  ITDCHDHFIKNGGPEVEEHIDFLMLNVDASIKEFKEFIDRGGSTIVTMDPPNVGRDVLKT 81

Query: 44  VPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAH 103
           + +    ++   ++  S G H    +++    +  +         VA  E G+D Y+   
Sbjct: 82  LEIANAVKNLGGNVIMSTGFHKAKFYDKYSSWLAVVPTEEIVKMCVAEIEEGMDEYNYNG 141

Query: 104 TIEEQKV---------------------VFLRHIEASRITGIPLVIHSRSADDDMAAILQ 142
            + ++                               S +TG P+++H++     +     
Sbjct: 142 PVVKRSKAKAGIIKAGTGYGAIDRLELKALEVAARTSILTGCPILVHTQLGTMALEVAKH 201

Query: 143 EEMKKGPFPFVI----HCFSSSQKLADICLELGGYISFTGMITFPKY------DALRAIA 192
                     +     +          +  E G  + F G      Y      + ++ + 
Sbjct: 202 LIGFGANPDKIQISHLNKNPDKYYYEKVIKETGVTLCFDGPDRVKYYPDSLLAENIKYLV 261

Query: 193 RGIPMDRVLVETDSPYIVPVSCQGKRNE-----PAYVVNTAKALAKEKDVSYEDLMEETT 247
                  + +  D+  I+     G          AY+ +    L K+  VS E + +   
Sbjct: 262 DKGLQKHITLSLDAGRILYQRNYGLTKGKQTFGLAYLFDRFLPLLKQVGVSKEAIFDILV 321

Query: 248 KNALKLFS 255
            N  ++ +
Sbjct: 322 NNPKRVLA 329


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 41/220 (18%), Positives = 66/220 (30%), Gaps = 99/220 (45%)

Query: 104 TIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPF-PFVI-------- 154
           T+ + K +   +I A  +   P    S SA       L   + +G      I        
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSA-------LFRAVGEGNAQLVAIFGGQGNTD 167

Query: 155 HCFSSSQKLADI-----CLELGGYISFTGMITFPKYDALRAIARGIPMDR---------V 200
             F   ++L D+      L +G  I F+        + L  + R   +D          +
Sbjct: 168 DYF---EELRDLYQTYHVL-VGDLIKFSA-------ETLSELIRT-TLDAEKVFTQGLNI 215

Query: 201 LV-----ET--DSPYI--VPVSC------------------------------------Q 215
           L          D  Y+  +P+SC                                    Q
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275

Query: 216 GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALK-LF 254
           G       +V TA A+A E D S+E     + + A+  LF
Sbjct: 276 G-------LV-TAVAIA-ETD-SWESF-FVSVRKAITVLF 304



 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 53/347 (15%), Positives = 88/347 (25%), Gaps = 162/347 (46%)

Query: 10  LLPDFDEDRHDVIMRAHQANVLKMIAIAIKV--KDFV-------PLIKLCQ--DYPSSIF 58
           L+     D     +     N+L+ +        KD++       PLI + Q   Y   + 
Sbjct: 198 LIRT-TLDAEK--VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY--VVT 252

Query: 59  CSV-GTHPC-----------HAH-----------------EENEVLVDELV------CLA 83
             + G  P            H+                    +      ++      C  
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312

Query: 84  SHPRV----------VAIGE---------TGLDRYH--------NAHTIEEQKVVFLRHI 116
           ++P            +   E         + L +          N+H          + +
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG------KQV 366

Query: 117 EAS-----R---ITGIP-----LVIHSR----SADDDMAAILQEEMKKGPF--------- 150
           E S     +   ++G P     L +  R     +  D + I        PF         
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI--------PFSERKLKFSN 418

Query: 151 -------PFVIHCFSSSQKLAD----ICLELGGY-ISFTG-MITFPKYDA-----LRA-- 190
                  PF  H    S  L      I  +L    +SF    I  P YD      LR   
Sbjct: 419 RFLPVASPF--H----SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472

Query: 191 ---IARGIPM---DRV----LVETDSPYIV---P--VSCQG---KRN 219
                R +       V      +  + +I+   P   S  G    RN
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519



 Score = 32.2 bits (73), Expect = 0.13
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 12/57 (21%)

Query: 9   LLLPDFD-EDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTH 64
           + +P +D  D  D  +R    ++ + I   I        I+L   + ++      TH
Sbjct: 455 IQIPVYDTFDGSD--LRVLSGSISERIVDCI--------IRLPVKWETTTQFKA-TH 500


>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural
           genomics, protein structure initiative; 1.85A
           {Clostridium acetobutylicum atcc 824}
          Length = 272

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 32/285 (11%), Positives = 57/285 (20%), Gaps = 56/285 (19%)

Query: 1   MLIDTHCHLLLPD-------------------------FDEDRHDVIMRAHQANVLKMIA 35
           ++ID H H++LP                             +  DV     + N +    
Sbjct: 3   LIIDGHTHVILPVEKHIKIMDEAGVDKTILFSTSIHPETAVNLRDVKKEMKKLNDVVNGK 62

Query: 36  IAIKVKDFVP----LIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAI 91
               +         L  + Q YPS     VG                +     +      
Sbjct: 63  TNSMIDVRRNSIKELTNVIQAYPSRY---VGFGNVPVGLSENDTNSYIEENIVNN----- 114

Query: 92  GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMA--AILQEEMKKGP 149
               L           Q        + S  +G   +         +     + E  K  P
Sbjct: 115 ---KLVGIGELTPASGQIKSLKPIFKYSMDSGSLPIWIHAFNPLVLQDIKEIAELCKAFP 171

Query: 150 FPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYI 209
              VI                    +     +      +  I       + +  TD P+ 
Sbjct: 172 KVPVILGHMGGSNWMTAVELAKEIQNLYLDTSAYFSTFVLKIVINELPLKCIFGTDMPFG 231

Query: 210 VPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254
                             +    K+              N  +L 
Sbjct: 232 DL--------------QLSIEAIKKMSNDSYVANAVLGDNISRLL 262


>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase,
           metalloprotease; HET: KCX; 1.65A {Escherichia coli}
           SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A*
           1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*
          Length = 390

 Score = 34.7 bits (78), Expect = 0.025
 Identities = 42/277 (15%), Positives = 72/277 (25%), Gaps = 24/277 (8%)

Query: 2   LIDTHCHLLLPDFDEDRHDV--------IMRAHQANVLKMIAIAIKVKDFVPLIKLCQDY 53
            ID H HL+    +              +  A   +V+ ++      +    L+   +  
Sbjct: 64  FIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRAL 123

Query: 54  PSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEE--QKVV 111
                 +      +      +       +A   RV+ +     D    A  +        
Sbjct: 124 NEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIGVKCAISDHRSAAPDVYHLANMAA 183

Query: 112 FLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKG-----PFPFVIHCFSSSQKLADI 166
             R            V H   +   +  I               P  ++      + A  
Sbjct: 184 ESRVGGLLGGKPGVTVFHMGDSKKALQPIYDLLENCDVPISKLLPTHVNRNVPLFEQALE 243

Query: 167 CLELGGYISFTGMITFP---KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAY 223
               GG I  T  I  P        RA+  GIP+ RV + +D     P            
Sbjct: 244 FARKGGTIDITSSIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLTHIG 303

Query: 224 VV------NTAKALAKEKDVSYEDLMEETTKNALKLF 254
           V        T + L K+ D S  D +   T +     
Sbjct: 304 VAGFETLLETVQVLVKDYDFSISDALRPLTSSVAGFL 340


>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2,
           ACMDS, ACMS, tryptophan-NDA metabolism, quinolinic acid,
           QUIN; 2.50A {Lactobacillus plantarum WCFS1} SCOP:
           c.1.9.15
          Length = 307

 Score = 32.8 bits (73), Expect = 0.092
 Identities = 25/204 (12%), Positives = 52/204 (25%), Gaps = 19/204 (9%)

Query: 53  YPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVF 112
            P++        P       + L      +A HP   AI    +D       +       
Sbjct: 123 VPTNSRGLYFGSPVL-ERVYQELDARQAIVALHPNEPAILPKNVDIDLPVPLLG------ 175

Query: 113 LRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGG 172
              ++ +      L  H      ++  I+                 + +       ++  
Sbjct: 176 -FFMDTTMTFINMLKYHFFEKYPNIKVIIPHAGAFLGIVDDRIAQYAQKVYQVDVYDVMH 234

Query: 173 YISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALA 232
           ++ F           L  +      + +L  +D PY                     ALA
Sbjct: 235 HVYFDVAGAVLP-RQLPTLMSLAQPEHLLYGSDIPYT----------PLDGSRQLGHALA 283

Query: 233 KEKDVSYEDLMEETTKNALKLFSK 256
               ++ E        NA +L ++
Sbjct: 284 TTDLLTNEQKQAIFYDNAHRLLTE 307


>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
           pickettii} SCOP: b.92.1.3 c.1.9.6
          Length = 457

 Score = 32.1 bits (71), Expect = 0.14
 Identities = 22/157 (14%), Positives = 39/157 (24%)

Query: 2   LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSV 61
            ID H H+    F+    D    A  A         +          L +        + 
Sbjct: 53  GIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAG 112

Query: 62  GTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRI 121
           G           VL      +     +  +G T    +     +     V L       +
Sbjct: 113 GKSAIDYGYHIIVLDPTDSVIEELEVLPDLGITSFKVFMAYRGMNMIDDVTLLKTLDKAV 172

Query: 122 TGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFS 158
               LV+      D    +  + + +G    + H  S
Sbjct: 173 KTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALS 209


>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural
           genomics, PSI, protein structure initiative; 1.80A
           {Rhodopseudomonas palustris CGA009} SCOP: c.1.9.15
          Length = 350

 Score = 31.8 bits (70), Expect = 0.15
 Identities = 29/243 (11%), Positives = 65/243 (26%), Gaps = 34/243 (13%)

Query: 46  LIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTI 105
             ++ Q +P   F      P     + +  + EL         VAI         +  + 
Sbjct: 96  CYRVSQLFPD-NFIGAAMLPQSPGVDPKTCIPELEKCVKEYGFVAINLNPDPSGGHWTSP 154

Query: 106 EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHC-----FSSS 160
                ++    E      IP +IH  ++ +                  + C     F   
Sbjct: 155 PLTDRIWYPIYEKMVELEIPAMIHVSTSCNTCFHTTGAHYLNADTTAFMQCVAGDLFKDF 214

Query: 161 QKLADICLELGGYISFTGMITFPKYD-------------------------ALRAIARGI 195
            +L  +    GG + +                                    +  +   I
Sbjct: 215 PELKFVIPHGGGAVPYHWGRFRGLAQEMKKPLLEDHVLNNIFFDTCVYHQPGIDLLNTVI 274

Query: 196 PMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255
           P+D VL  ++                 Y  +T + +     ++ E+  +    NA +++ 
Sbjct: 275 PVDNVLFASEMIG---AVRGIDPRTGFYYDDTKRYIEASTILTPEEKQQIYEGNARRVYP 331

Query: 256 KIS 258
           ++ 
Sbjct: 332 RLD 334


>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex,
           amido hydrolase, structural genomics, PSI-2; HET: KCX;
           2.62A {Agrobacterium tumefaciens str}
          Length = 417

 Score = 31.3 bits (69), Expect = 0.21
 Identities = 27/262 (10%), Positives = 64/262 (24%), Gaps = 10/262 (3%)

Query: 2   LIDTHCHLLLP-DFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60
            +D H H+         R            L     A +         + +     I   
Sbjct: 73  WVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAF 132

Query: 61  VGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVV-------FL 113
           +          N V     +      R++       +            +          
Sbjct: 133 LNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRASHVITGSWGVTPVK 192

Query: 114 RHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGY 173
              + ++I  +P+++H          +L+  +  G          S   + +        
Sbjct: 193 LGKKIAKILKVPMMVHVGEPPALYDEVLE-ILGPGDVVTHCFNGKSGSSIMEDEDLFNLA 251

Query: 174 ISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPV-SCQGKRNEPAYVVNTAKALA 232
               G           A       +  +     P+ +         N P + + T  +  
Sbjct: 252 ERCAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLATTMSKL 311

Query: 233 KEKDVSYEDLMEETTKNALKLF 254
              D+ +E+++E  T+N   + 
Sbjct: 312 LSVDMPFENVVEAVTRNPASVI 333


>1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme,
           temperature dependent structural changes, hydrolase;
           HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1
           c.1.9.2 PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A*
           1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C*
           1fwi_C* 1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C*
           1a5k_C ...
          Length = 567

 Score = 30.8 bits (69), Expect = 0.35
 Identities = 29/209 (13%), Positives = 50/209 (23%), Gaps = 16/209 (7%)

Query: 2   LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFC 59
            IDTH H + P    +     V               A         I        S+  
Sbjct: 130 GIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPV 189

Query: 60  SVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEAS 119
           ++G        +            +    VA G  GL  + +              +  +
Sbjct: 190 NIGLLGKGNVSQ----------PDALREQVAAGVIGLKIHEDWGATPA---AIDCALTVA 236

Query: 120 RITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGM 179
               I + +HS + ++            G      H   +    A   +    + +    
Sbjct: 237 DEMDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPS 296

Query: 180 ITFPKYD-ALRAIARGIPMDRVLVETDSP 207
            T P     L  I   + M  V    D  
Sbjct: 297 STNPTLPYTLNTIDEHLDMLMVCHHLDPD 325


>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
           initiative, N SGX research center for structural
           genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
          Length = 608

 Score = 29.8 bits (66), Expect = 0.59
 Identities = 36/264 (13%), Positives = 61/264 (23%), Gaps = 31/264 (11%)

Query: 2   LIDTHCHLLLPDFDEDRHDVIMRAHQAN----VLKM---IAIAIKVKDFVPLIKLCQDYP 54
           LIDTH H+   +           A  A     ++           V       K  ++ P
Sbjct: 91  LIDTHMHI---ESSMITPAAYAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLP 147

Query: 55  SSIF----CSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKV 110
                     V + P       +     L  L S P +  I E       N   + E+  
Sbjct: 148 LRAILLAPSCVPSAPGLERGGADFDAAILADLLSWPEIGGIAE-----IMNMRGVIERDP 202

Query: 111 VFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL 170
                ++A       +  H+R   +                   H   S + L       
Sbjct: 203 RMSGIVQAGLAAEKLVCGHARGLKNAD-----LNAFMAAGVSSDHELVSGEDLMAKLRAG 257

Query: 171 GGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKA 230
                                  G     V + TD  +   +   G  ++          
Sbjct: 258 LTIELRGSHDHLLPEFVAALNTLGHLPQTVTLCTDDVFPDDLLQGGGLDD-------VVR 310

Query: 231 LAKEKDVSYEDLMEETTKNALKLF 254
                 +  E  +   T NA +  
Sbjct: 311 RLVRYGLKPEWALRAATLNAAQRL 334


>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962,
           cytoplasm, hydrolase, manganese, metal-binding,
           protease, structural genomics; HET: PGE PG4; 1.80A
           {Coxiella burnetii}
          Length = 482

 Score = 29.4 bits (66), Expect = 0.81
 Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 14/64 (21%)

Query: 184 KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNE--PAYVVNTAKALAKEKDVSYED 241
               +      I + R L+ T +             +  P+ +    K +AKE +   + 
Sbjct: 159 HRKRVTDWLTTIYLIRDLINTPA------------EDMGPSELAQAVKHVAKEFEAKVKI 206

Query: 242 LMEE 245
           +  +
Sbjct: 207 IESK 210


>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
           1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
           1qxw_A* 1qxz_A*
          Length = 252

 Score = 29.1 bits (64), Expect = 1.0
 Identities = 5/126 (3%), Positives = 28/126 (22%)

Query: 32  KMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAI 91
            +     +    +      +++P     SV     H      V+ +  +       +   
Sbjct: 41  NIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNG 100

Query: 92  GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFP 151
                         ++     +  +           +   +   ++   +    ++    
Sbjct: 101 YYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLK 160

Query: 152 FVIHCF 157
            + +  
Sbjct: 161 VIKNLT 166


>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics,
           TM0814, JCSG, PSI, protein structure initiative; 2.50A
           {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10
          Length = 376

 Score = 28.6 bits (62), Expect = 1.7
 Identities = 12/103 (11%), Positives = 26/103 (25%), Gaps = 1/103 (0%)

Query: 2   LIDTHCHLLLP-DFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60
            +D H H ++  D        +     +  +              + ++ +     I  +
Sbjct: 57  FVDPHIHGVVGADTMNCDFSEMEEFLYSQGVTTFLATTVSTSLEKMKEILRKARDYILEN 116

Query: 61  VGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAH 103
             T     H E   +  E     S   +    E  L    +  
Sbjct: 117 PSTSLLGVHLEGPYISKEKKGAHSEKHIRPPSERELSEIDSPA 159


>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET:
           KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB:
           1gkq_A*
          Length = 458

 Score = 28.4 bits (61), Expect = 1.8
 Identities = 20/154 (12%), Positives = 41/154 (26%)

Query: 2   LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSV 61
            ID H H+ LP       D      +A ++      I++          + Y      + 
Sbjct: 54  FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAE 113

Query: 62  GTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRI 121
           G   C       V   +         +VA G +    + +           +        
Sbjct: 114 GNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFKIFLSYKNFFGVDDGEMYQTLRLAK 173

Query: 122 TGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIH 155
               +V       + +  + Q+ + +G      H
Sbjct: 174 ELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWH 207


>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics,
           amidohydrolase, PSI-2, protein structure initiative;
           2.00A {Lactobacillus acidophilus}
          Length = 312

 Score = 27.8 bits (60), Expect = 2.7
 Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 12/107 (11%)

Query: 148 GPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSP 207
              PF                    Y+    +   P   AL+       +D VL  TD+P
Sbjct: 209 AMVPFFSGRIDHILDEKHAQDFKKFYVDTAILGNTP---ALQLAIDYYGIDHVLFGTDAP 265

Query: 208 YIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254
           + V          P+           +  +S +D  +    N   L 
Sbjct: 266 FAVM---------PSGADQIITQAINDLTISDKDKQKIFHDNYYSLI 303


>2vun_A Enamidase; nicotinate degradation, binuclear metal center,
           amidohydrolases, stereospecificity, hydrolase; 1.89A
           {Eubacterium barkeri}
          Length = 386

 Score = 27.1 bits (58), Expect = 3.5
 Identities = 24/259 (9%), Positives = 59/259 (22%), Gaps = 9/259 (3%)

Query: 2   LIDTHCHLLLPDFDEDR------HDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPS 55
           L+DTH H+   D+   +         +       +                 K      S
Sbjct: 63  LLDTHVHVSGGDYAPRQKTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTKALAITLS 122

Query: 56  SIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRH 115
             + +        H    +L   L                 +         E        
Sbjct: 123 KSYYNARPAGVKVHGGAVILEKGLTEEDFIEMKKEGVWIVGEVGLGTIKNPED---AAPM 179

Query: 116 IEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYIS 175
           +E +   G  + +H+       ++ +  +      P V+   +       +         
Sbjct: 180 VEWAHKHGFKVQMHTGGTSIPGSSTVTADDVIKTKPDVVSHINGGPTAISVQEVDRIMDE 239

Query: 176 FTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEK 235
               +   +    +             +         +  G    P  ++     +A   
Sbjct: 240 TDFAMEIVQCGNPKIADYVARRAAEKGQLGRVIFGNDAPSGTGLIPLGILRNMCQIASMS 299

Query: 236 DVSYEDLMEETTKNALKLF 254
           D+  E  +   T N+  ++
Sbjct: 300 DIDPEVAVCMATGNSTAVY 318


>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel,
           beta-fold, structural genomics, PSI-2, protein structure
           initiative; HET: MSE; 2.10A {Oleispira antarctica}
          Length = 468

 Score = 27.3 bits (59), Expect = 3.6
 Identities = 18/175 (10%), Positives = 41/175 (23%), Gaps = 5/175 (2%)

Query: 2   LIDTHCHLLLPDF-----DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSS 56
            ++ H H  +  F     D      +         + +      +     I       ++
Sbjct: 88  WVNAHGHAAMSLFRGLADDLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTT 147

Query: 57  IFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHI 116
            F  +  +P  + E         VC A             D Y         +       
Sbjct: 148 TFADMYFYPQQSGEAALAAGIRAVCFAPVLDFPTNYAQNADEYIRKAIECNDRFNNHPMN 207

Query: 117 EASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELG 171
           E   +          +  D+    +     +   P  IH   +  ++++      
Sbjct: 208 EQGLVQIGFGPHAPYTVSDEPLKEITMLSDQLDMPVQIHLHETDFEVSESLETFN 262


>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics,
           amidohydrolase, PSI-2, protein structure initiative;
           HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A*
           3igh_X*
          Length = 534

 Score = 27.1 bits (58), Expect = 3.9
 Identities = 25/200 (12%), Positives = 48/200 (24%), Gaps = 6/200 (3%)

Query: 2   LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSV 61
             D+H HL       +  D+        V  M  +  +VK     I     +        
Sbjct: 97  FFDSHLHLDELGMSLEMVDL------RGVKSMEELVERVKKGRGRIIFGFGWDQDELGRW 150

Query: 62  GTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRI 121
            T       +  V +       +      I    L    +                   I
Sbjct: 151 PTREDLDVIDRPVFLYRRCFHVAVMNSKMIDLLNLKPSKDFDESTGIVRERALEESRKII 210

Query: 122 TGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMIT 181
               L +       + A      +      F+     + + L ++  E    ++    ++
Sbjct: 211 NEKILTVKDYKHYIESAQEHLLSLGVHSVGFMSVGEKALKALFELEREGRLKMNVFAYLS 270

Query: 182 FPKYDALRAIARGIPMDRVL 201
               D L  +  G    R L
Sbjct: 271 PELLDKLEELNLGKFEGRRL 290


>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase;
           neurological disorders, metal-dependent amidohydrolase,
           kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}
          Length = 336

 Score = 27.1 bits (58), Expect = 4.0
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 12/69 (17%)

Query: 186 DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEE 245
            +L+ +   I  D+V++ TD P+            P   +   K +   ++   E   + 
Sbjct: 272 LSLKLLTDVIGKDKVILGTDYPF------------PLGELEPGKLIESMEEFDEETKNKL 319

Query: 246 TTKNALKLF 254
              NAL   
Sbjct: 320 KAGNALAFL 328



 Score = 26.3 bits (56), Expect = 6.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 1  MLIDTHCHLLLPDFDE 16
          M ID H H+L  ++ +
Sbjct: 1  MKIDIHSHILPKEWPD 16


>2hc9_A Leucine aminopeptidase 1; zinc, carbonate, structural genomics,
           PSI, protein structure initiative; 1.85A {Caenorhabditis
           elegans} PDB: 2hb6_A
          Length = 491

 Score = 26.9 bits (59), Expect = 4.8
 Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 14/61 (22%)

Query: 187 ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNE--PAYVVNTAKALAKEKDVSYEDLME 244
            L  ++  +     L++T +            N      +V+ A  +          +  
Sbjct: 162 FLTDLSESVRETARLIDTPA------------NILTTDALVDEAVKVGNATGSKITVIRG 209

Query: 245 E 245
           E
Sbjct: 210 E 210


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 7/23 (30%)

Query: 23 MRAHQANVLKMIA------IAIK 39
          ++  QA+ LK+ A      +AIK
Sbjct: 22 LKKLQAS-LKLYADDSAPALAIK 43


>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genomics,
           JCSG, PSI, protein structure initiative; 2.00A
           {Thermotoga maritima} SCOP: c.82.1.1
          Length = 427

 Score = 26.7 bits (58), Expect = 5.1
 Identities = 8/106 (7%), Positives = 19/106 (17%), Gaps = 6/106 (5%)

Query: 35  AIAIKVKDFVPLIK-LCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGE 93
            I ++                                        ++ +      +++  
Sbjct: 153 TILLRGGSDALNSNKAIVSAIREALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVI 212

Query: 94  TGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAA 139
                   +   +   V  L         G   +    SAD   A 
Sbjct: 213 PRGGYGLISFVRDNATVPVLETGV-----GNCHIFVDESADLKKAV 253


>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase;
           1.50A {Bordetella bronchiseptica} PDB: 3giq_A*
          Length = 480

 Score = 26.8 bits (57), Expect = 5.4
 Identities = 14/160 (8%), Positives = 33/160 (20%), Gaps = 4/160 (2%)

Query: 2   LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKM----IAIAIKVKDFVPLIKLCQDYPSSI 57
            ID H H  L   ++             V+       A    +                 
Sbjct: 62  FIDVHGHDDLMFVEKPDLRWKTSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLF 121

Query: 58  FCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIE 117
                       +   + V  LV  A+                    +++     L    
Sbjct: 122 ADVPAYFAALDAQRPMINVAALVGHANLRLAAMRDPQAAPTAAEQQAMQDMLQAALEAGA 181

Query: 118 ASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCF 157
               TG+     + +   ++  + +   ++          
Sbjct: 182 VGFSTGLAYQPGAVAQAAELEGLARVAAERRRLHTSHIRN 221


>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putative; TIM-barrel
           protein., structural genomics, PSI, protein structure
           initiative; 2.61A {Pseudomonas putida KT2440} SCOP:
           c.1.9.15
          Length = 288

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 27/225 (12%), Positives = 61/225 (27%), Gaps = 19/225 (8%)

Query: 3   IDTHCHL------------LLPDFDEDRHDVIMRAHQANVLKMIAI--AIKVKDFVPLIK 48
           ID+H H+              P++D    D + +         + +  +    D   L+ 
Sbjct: 15  IDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFLGTDNRYLLS 74

Query: 49  LCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYH--NAHTIE 106
             Q  P  +   V             +    V       +                  I 
Sbjct: 75  ALQTVPGQLRGVVMLERDVEQATLAEMARLGVRGVRLNLMGQDMPDLTGAQWRPLLERIG 134

Query: 107 EQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADI 166
           EQ      H + + I  +   +     D  +    + + ++G          +      +
Sbjct: 135 EQGWHVELHRQVADIPVLVRALQPYGLDIVIDHFGRPDARRGLGQPGFAELLTLSGRGKV 194

Query: 167 CLELGGYISFTGMITFPKYDALRAIARGIPM---DRVLVETDSPY 208
            +++ G     G        A +A+         +R++  +D P+
Sbjct: 195 WVKVSGIYRLQGSPEENLAFARQALCALEAHYGAERLMWGSDWPH 239


>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein
           structure initiative, TIM-barrel protein; HET: GOL;
           1.76A {Bordetella bronchiseptica}
          Length = 291

 Score = 26.4 bits (57), Expect = 6.1
 Identities = 20/173 (11%), Positives = 41/173 (23%), Gaps = 12/173 (6%)

Query: 46  LIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTI 105
           +  + + YP                  E +      L    R+V +         +    
Sbjct: 82  VAAVAKAYPDKFHPVGSIEA---ATRKEAMAQMQEILDLGIRIVNLEPGVWATPMHVD-- 136

Query: 106 EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAI--LQEEMKKGPFPFVIHCFSSSQKL 163
           + +        E + I  I +   +   D        +   +   P   V+    +   +
Sbjct: 137 DRRLYPLYAFCEDNGIPVIMMTGGNAGPDITYTNPEHIDRVLGDFPDLTVVSSHGNWPWV 196

Query: 164 ADICLELGGY-----ISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVP 211
            +I                 +   P +      A     DR+L  T  P    
Sbjct: 197 QEIIHVAFRRPNLYLSPDMYLYNLPGHADFIQAANSFLADRMLFGTAYPMCPL 249


>1e9y_B Urease beta subunit; hydrolase, dodecamer, acetohydroxamic acid;
           HET: KCX; 3.0A {Helicobacter pylori} SCOP: b.92.1.1
           c.1.9.2 PDB: 1e9z_B*
          Length = 569

 Score = 26.2 bits (57), Expect = 6.8
 Identities = 23/199 (11%), Positives = 48/199 (24%), Gaps = 16/199 (8%)

Query: 2   LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIA--IAIKVKDFVPLIKLCQDYPSSIFC 59
            IDTH H + P          +               A  +      +K           
Sbjct: 132 GIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSM 191

Query: 60  SVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEAS 119
           ++G         +  L D++             E G   +                ++ +
Sbjct: 192 NLGFLAKGNASNDASLADQI-------------EAGAIGFKIHEDWGTTPSAINHALDVA 238

Query: 120 RITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGM 179
               + + IH+ + ++            G      H   +    A   +++ G  +    
Sbjct: 239 DKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPA 298

Query: 180 ITFPKYDALR-AIARGIPM 197
            T P         A  + M
Sbjct: 299 STNPTIPFTVNTEAEHMDM 317


>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel,
           zinc, metallo- enzyme, structure 2 function project,
           S2F, unknown function; 1.57A {Escherichia coli} SCOP:
           c.6.3.1 PDB: 1m68_A 1pb0_A
          Length = 245

 Score = 26.5 bits (57), Expect = 6.8
 Identities = 22/226 (9%), Positives = 56/226 (24%), Gaps = 22/226 (9%)

Query: 1   MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAI--------AIKVKDFVPLIKLCQD 52
             +D H H +            +   +   +K+ AI                  +++   
Sbjct: 2   YPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDMEDAPHHWHFINMRIWPR 61

Query: 53  YPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHT-------I 105
               +    G      + + E+     +  +    +    E     +  A         I
Sbjct: 62  VVDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLIIAGFHEPVFAPHDKATNTQAMIATI 121

Query: 106 EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLAD 165
               V  + H    +       +   +A   +A    E               + +++A 
Sbjct: 122 ASGNVHIISHPGNPKYEIDVKAVAEAAAKHQVAL---EINNSSFLHSRKGSEDNCREVAA 178

Query: 166 ICLELGGYISFTGMITFPK----YDALRAIARGIPMDRVLVETDSP 207
              + GG+++             ++    I   +      +   SP
Sbjct: 179 AVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPERILNVSP 224


>1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI,
          protein structure initiative, joint center for
          structural genomics; 2.85A {Thermotoga maritima} SCOP:
          c.1.9.8
          Length = 463

 Score = 26.0 bits (57), Expect = 8.1
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 2  LIDTHCHLLLPDFDEDRH 19
          ++D H HL   D  E++ 
Sbjct: 38 IVDPHNHLDAKDIVENKP 55


>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A
           {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A*
          Length = 528

 Score = 26.1 bits (57), Expect = 8.3
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 10/57 (17%)

Query: 189 RAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEE 245
           R    G      L+   S Y  P            + N A  LA++ ++ Y+ L  +
Sbjct: 202 RVYYFGTYYASQLIAAPSNYCNP----------VSLSNAAVELAQKLNLEYKILGVK 248


>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP
           elongation complex, transcription/DNA/RNA complex; 2.10A
           {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A
           1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A*
           3e3j_C* 1aro_P 2pi4_A* 2pi5_A
          Length = 883

 Score = 25.9 bits (56), Expect = 9.1
 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 60  SVGTHPCHAHEENEVLVDELVCL-ASHPRVVAIGETGLDRYHNAHTIEEQKV 110
           S GT P  A    + + + +V    S   +    +   D+ H +   +   +
Sbjct: 813 SFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPAL 864


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0432    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,318,508
Number of extensions: 107546
Number of successful extensions: 584
Number of sequences better than 10.0: 1
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 72
Length of query: 262
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 171
Effective length of database: 3,487,026
Effective search space: 596281446
Effective search space used: 596281446
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.1 bits)