HHsearch alignment for GI: 254780217 and conserved domain: CHL00195
>CHL00195 ycf46 Ycf46; Provisional.
Probab=98.67 E-value=7.1e-07 Score=74.98 Aligned_cols=187 Identities=11% Similarity=0.080 Sum_probs=115.9
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHH---HHHC-----C-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 96655558756561092999999999---9982-----8-8981663117989888999999999981779988643121
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQ---YYCS-----G-RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~---~~~~-----~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~ 71 (347)
T Consensus 217 ~Le~~~~~~~~~~vGGl~~lK~wl~~r~~~f~~~a~~~gl~~PkGvLL~GpPG~GKtl~AKAvA~e~~~-------p~l~ 289 (491)
T CHL00195 217 ILEFYSVNEKISDIGGLDNLKDWLKKRSTSFSKQAENYGLPTPRGLLLVGIQGTGKSLTAKAIANEWNL-------PLLR 289 (491)
T ss_pred CEEEEECCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------CEEE
T ss_conf 658874899804146889999999998898623366459999987999799998789999999866389-------4699
Q ss_pred CCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--------
Q ss_conf 012678867999967898754530010001013421232378875544310222111121035322055424--------
Q gi|254780217|r 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-------- 143 (347)
Q Consensus 72 ~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-------- 143 (347)
T Consensus 290 l~~-------~~l~~~------~vG-----e--------sE~~~r~~f~~A~~----~aP~ilfiDEidk~~~~~~~~~d 339 (491)
T CHL00195 290 LDV-------GKLFGG------IVG-----E--------SESRMRQMIQLAET----ISPCILWIDEIDKAFSGLDSKGD 339 (491)
T ss_pred EEH-------HHHHHH------HCC-----H--------HHHHHHHHHHHHHH----HCCEEEEEEHHHHHCCCCCCCCC
T ss_conf 667-------997560------067-----0--------49999999999986----19858997465454258888888
Q ss_pred ----HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHC--EEE-EEECCCCCHHHHHHHHHHH----CCC-CCHHHHH
Q ss_conf ----000145677766303434167650443357302520--369-8864799989999999972----788-8967899
Q gi|254780217|r 144 ----RNAANALLKSLEEPPQKVLFILISHASPTILSTIRS--RCL-SIKFNSLSENNLYKALEQL----KIM-GWDSKRD 211 (347)
Q Consensus 144 ----~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~S--Rc~-~i~f~~l~~~~~~~~L~~~----~~~-~~~~~~~ 211 (347)
T Consensus 340 ~g~s~rv~~~~Lt~m~e~~~~VfViattN~~~~L~pellR~GRFD~~~~v~lP~~~~R~~I~~ihl~~~~~~~~~~~d~~ 419 (491)
T CHL00195 340 SGTSNRVLATFITWLSEKKSPVFVVATANNIDSLPLELLRKGRFDEIFFLDLPNLEERELIFKIHLKRFRPNSWQNYDIE 419 (491)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 72328999999998646899769999589975589877089877704764895989999999999854478875546999
Q ss_pred HHHHHCCCCHHHH
Q ss_conf 9999759897899
Q gi|254780217|r 212 FVKIAAYGSVARA 224 (347)
Q Consensus 212 ~~~~~s~Gs~~~A 224 (347)
T Consensus 420 ~la~~t~gfsGAe 432 (491)
T CHL00195 420 ILSQLTNKFSGAE 432 (491)
T ss_pred HHHHHCCCCCHHH
T ss_conf 9997685988899