HHsearch alignment for GI: 254780217 and conserved domain: CHL00195

>CHL00195 ycf46 Ycf46; Provisional.
Probab=98.67  E-value=7.1e-07  Score=74.98  Aligned_cols=187  Identities=11%  Similarity=0.080  Sum_probs=115.9

Q ss_pred             CCCCCCCCCCHHHHCCHHHHHHHHHH---HHHC-----C-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf             96655558756561092999999999---9982-----8-8981663117989888999999999981779988643121
Q gi|254780217|r    1 MIDRAFDPVYNQRLFGHEDIEKFLSQ---YYCS-----G-RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM   71 (347)
Q Consensus         1 ~~~~~~~p~~~~~i~G~~~~~~~L~~---~~~~-----~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~   71 (347)
T Consensus       217 ~Le~~~~~~~~~~vGGl~~lK~wl~~r~~~f~~~a~~~gl~~PkGvLL~GpPG~GKtl~AKAvA~e~~~-------p~l~  289 (491)
T CHL00195        217 ILEFYSVNEKISDIGGLDNLKDWLKKRSTSFSKQAENYGLPTPRGLLLVGIQGTGKSLTAKAIANEWNL-------PLLR  289 (491)
T ss_pred             CEEEEECCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------CEEE
T ss_conf             658874899804146889999999998898623366459999987999799998789999999866389-------4699


Q ss_pred             CCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--------
Q ss_conf             012678867999967898754530010001013421232378875544310222111121035322055424--------
Q gi|254780217|r   72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN--------  143 (347)
Q Consensus        72 ~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln--------  143 (347)
T Consensus       290 l~~-------~~l~~~------~vG-----e--------sE~~~r~~f~~A~~----~aP~ilfiDEidk~~~~~~~~~d  339 (491)
T CHL00195        290 LDV-------GKLFGG------IVG-----E--------SESRMRQMIQLAET----ISPCILWIDEIDKAFSGLDSKGD  339 (491)
T ss_pred             EEH-------HHHHHH------HCC-----H--------HHHHHHHHHHHHHH----HCCEEEEEEHHHHHCCCCCCCCC
T ss_conf             667-------997560------067-----0--------49999999999986----19858997465454258888888


Q ss_pred             ----HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHC--EEE-EEECCCCCHHHHHHHHHHH----CCC-CCHHHHH
Q ss_conf             ----000145677766303434167650443357302520--369-8864799989999999972----788-8967899
Q gi|254780217|r  144 ----RNAANALLKSLEEPPQKVLFILISHASPTILSTIRS--RCL-SIKFNSLSENNLYKALEQL----KIM-GWDSKRD  211 (347)
Q Consensus       144 ----~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~S--Rc~-~i~f~~l~~~~~~~~L~~~----~~~-~~~~~~~  211 (347)
T Consensus       340 ~g~s~rv~~~~Lt~m~e~~~~VfViattN~~~~L~pellR~GRFD~~~~v~lP~~~~R~~I~~ihl~~~~~~~~~~~d~~  419 (491)
T CHL00195        340 SGTSNRVLATFITWLSEKKSPVFVVATANNIDSLPLELLRKGRFDEIFFLDLPNLEERELIFKIHLKRFRPNSWQNYDIE  419 (491)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf             72328999999998646899769999589975589877089877704764895989999999999854478875546999


Q ss_pred             HHHHHCCCCHHHH
Q ss_conf             9999759897899
Q gi|254780217|r  212 FVKIAAYGSVARA  224 (347)
Q Consensus       212 ~~~~~s~Gs~~~A  224 (347)
T Consensus       420 ~la~~t~gfsGAe  432 (491)
T CHL00195        420 ILSQLTNKFSGAE  432 (491)
T ss_pred             HHHHHCCCCCHHH
T ss_conf             9997685988899