HHsearch alignment for GI: 254780217 and conserved domain: COG0466
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=98.44 E-value=1.5e-06 Score=72.39 Aligned_cols=159 Identities=20% Similarity=0.275 Sum_probs=94.8
Q ss_pred HHCCHHHHHHHHHHHHHC----CCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCC
Q ss_conf 610929999999999982----8898-16631179898889999999999817799886431210126788679999678
Q gi|254780217|r 13 RLFGHEDIEKFLSQYYCS----GRMH-HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 (347)
Q Consensus 13 ~i~G~~~~~~~L~~~~~~----~~l~-ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (347)
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv--R~sLGGvrDEAEIRGHRRTYIG 401 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV--RISLGGVRDEAEIRGHRRTYIG 401 (782)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE--EEECCCCCCHHHHCCCCCCCCC
T ss_conf 55671168999999999998614678857999789988701189999999589779--9954765427775355312335
Q ss_pred CCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH----HHHHHHHHHHH--------
Q ss_conf 987545300100010134212323788755443102221111210353220554240----00145677766--------
Q gi|254780217|r 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR----NAANALLKSLE-------- 155 (347)
Q Consensus 88 ~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~----~AaNALLK~LE-------- 155 (347)
T Consensus 402 aMPGr-------------------------IiQ~mkka~~~--NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~ 454 (782)
T COG0466 402 AMPGK-------------------------IIQGMKKAGVK--NPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFS 454 (782)
T ss_pred CCCHH-------------------------HHHHHHHHCCC--CCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHH
T ss_conf 68728-------------------------99999986776--8747864033316777788688888626976567612
Q ss_pred -----HCC--CCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHH
Q ss_conf -----303--434167650443357302520369886479998999999997
Q gi|254780217|r 156 -----EPP--QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 (347)
Q Consensus 156 -----EPp--~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~ 200 (347)
T Consensus 455 DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~ 506 (782)
T COG0466 455 DHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKR 506 (782)
T ss_pred HCCCCCCCCHHHEEEEEECCCCCCCCHHHHCCEEEEEECCCCHHHHHHHHHH
T ss_conf 2201676644325888603751329867843030564268886999999998