HHsearch alignment for GI: 254780217 and conserved domain: COG0466

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=98.44  E-value=1.5e-06  Score=72.39  Aligned_cols=159  Identities=20%  Similarity=0.275  Sum_probs=94.8

Q ss_pred             HHCCHHHHHHHHHHHHHC----CCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCC
Q ss_conf             610929999999999982----8898-16631179898889999999999817799886431210126788679999678
Q gi|254780217|r   13 RLFGHEDIEKFLSQYYCS----GRMH-HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH   87 (347)
Q Consensus        13 ~i~G~~~~~~~L~~~~~~----~~l~-ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~   87 (347)
T Consensus       324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv--R~sLGGvrDEAEIRGHRRTYIG  401 (782)
T COG0466         324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV--RISLGGVRDEAEIRGHRRTYIG  401 (782)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE--EEECCCCCCHHHHCCCCCCCCC
T ss_conf             55671168999999999998614678857999789988701189999999589779--9954765427775355312335


Q ss_pred             CCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH----HHHHHHHHHHH--------
Q ss_conf             987545300100010134212323788755443102221111210353220554240----00145677766--------
Q gi|254780217|r   88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR----NAANALLKSLE--------  155 (347)
Q Consensus        88 ~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~----~AaNALLK~LE--------  155 (347)
T Consensus       402 aMPGr-------------------------IiQ~mkka~~~--NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~  454 (782)
T COG0466         402 AMPGK-------------------------IIQGMKKAGVK--NPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFS  454 (782)
T ss_pred             CCCHH-------------------------HHHHHHHHCCC--CCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHH
T ss_conf             68728-------------------------99999986776--8747864033316777788688888626976567612


Q ss_pred             -----HCC--CCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHH
Q ss_conf             -----303--434167650443357302520369886479998999999997
Q gi|254780217|r  156 -----EPP--QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ  200 (347)
Q Consensus       156 -----EPp--~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~  200 (347)
T Consensus       455 DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~  506 (782)
T COG0466         455 DHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKR  506 (782)
T ss_pred             HCCCCCCCCHHHEEEEEECCCCCCCCHHHHCCEEEEEECCCCHHHHHHHHHH
T ss_conf             2201676644325888603751329867843030564268886999999998