HHsearch alignment for GI: 254780217 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=97.97 E-value=0.00028 Score=54.09 Aligned_cols=194 Identities=13% Similarity=0.083 Sum_probs=121.0
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCC
Q ss_conf 56561092999999999998288981663117989888999999999981779988643121012678867999967898
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~h 89 (347)
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNN-PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L--~~~----------------- 227 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNN-PVLVGEPGVGKTAIVEGLAQRIVNGDVPESL--KDK----------------- 227 (786)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCC-CEEECCCCCCHHHHHHHHHHHHHCCCCCHHH--CCC-----------------
T ss_conf 98877374799999999983568899-8476689888999998999997469999787--588-----------------
Q ss_pred CCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC---------HHHHHHHHHHHHHCCCC
Q ss_conf 754530010001013421232378875544310222111121035322055424---------00014567776630343
Q gi|254780217|r 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN---------RNAANALLKSLEEPPQK 160 (347)
Q Consensus 90 pd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln---------~~AaNALLK~LEEPp~~ 160 (347)
T Consensus 228 -~i~sLD~g~LvAGakyRGe-FEeRlk~vl~ev~~~~----~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLA---RG 298 (786)
T COG0542 228 -RIYSLDLGSLVAGAKYRGE-FEERLKAVLKEVEKSK----NVILFIDEIHTIVGAGATEGGAMDAANLLKPALA---RG 298 (786)
T ss_pred -EEEEECHHHHHCCCCCCCC-HHHHHHHHHHHHHCCC----CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHH---CC
T ss_conf -7997148767464653573-8999999999985179----8499982355405777666665125664677874---58
Q ss_pred CCEEEE-EC-CCCC-C---CHHHHCEEEEEECCCCCHHHHHHHHHH--------HCCCCCHHHHHHHHHHCCC------C
Q ss_conf 416765-04-4335-7---302520369886479998999999997--------2788896789999997598------9
Q gi|254780217|r 161 VLFILI-SH-ASPT-I---LSTIRSRCLSIKFNSLSENNLYKALEQ--------LKIMGWDSKRDFVKIAAYG------S 220 (347)
Q Consensus 161 t~fiLi-t~-~~~~-i---l~TI~SRc~~i~f~~l~~~~~~~~L~~--------~~~~~~~~~~~~~~~~s~G------s 220 (347)
T Consensus 299 eL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~L 378 (786)
T COG0542 299 ELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFL 378 (786)
T ss_pred CEEEEEECCHHHHHHHHHHCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHCCCCCC
T ss_conf 73799735589998873306677846751027998989999999877888877069643379999999999864556789
Q ss_pred HHHHHHHHCCCH
Q ss_conf 789998814577
Q gi|254780217|r 221 VARAIKILHYDC 232 (347)
Q Consensus 221 ~~~A~~ll~~~~ 232 (347)
T Consensus 379 PDKAIDLiDeA~ 390 (786)
T COG0542 379 PDKAIDLLDEAG 390 (786)
T ss_pred CCHHHHHHHHHH
T ss_conf 946777889999