HHsearch alignment for GI: 254780217 and conserved domain: COG0593
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair].
Probab=98.31 E-value=0.00043 Score=52.60 Aligned_cols=191 Identities=15% Similarity=0.138 Sum_probs=115.4
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 6555587565610929999999999982-889816631179898889999999999817799886431210126788679
Q gi|254780217|r 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 (347)
Q Consensus 3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~ 81 (347)
T Consensus 81 ~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~------------------- 141 (408)
T COG0593 81 NPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANG------------------- 141 (408)
T ss_pred CCCCCHHHEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-------------------
T ss_conf 9888554220477449999999998756688689579987999978999999999998629-------------------
Q ss_pred HHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHH--HHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHC
Q ss_conf 999678987545300100010134212323788755--443102221111210353220554240--0014567776630
Q gi|254780217|r 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEP 157 (347)
Q Consensus 82 ~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~--l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEP 157 (347)
T Consensus 142 ------~~a~v~y~~se--~f~~~-----~v~a~~~~~~~~F---k~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l 204 (408)
T COG0593 142 ------PNARVVYLTSE--DFTND-----FVKALRDNEMEKF---KEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNAL 204 (408)
T ss_pred ------CCCEEEECCHH--HHHHH-----HHHHHHHHHHHHH---HHHH-CCCEEEECHHHHHCCCHHHHHHHHHHHHHH
T ss_conf ------98648850489--98999-----9999885048888---8764-267355513867567715799999999988
Q ss_pred CCCC-CEEEEECCC-C---CCCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 3434-167650443-3---5730252036---9886479998999999997----2788896789999997598978999
Q gi|254780217|r 158 PQKV-LFILISHAS-P---TILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAI 225 (347)
Q Consensus 158 p~~t-~fiLit~~~-~---~il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~ 225 (347)
T Consensus 205 ~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLe 284 (408)
T COG0593 205 LENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELE 284 (408)
T ss_pred HHCCCEEEEECCCCCHHHCCCCHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHH
T ss_conf 85088799970788322110358899898630577527988899999999999865888887999999997003099999
Q ss_pred HHHC
Q ss_conf 8814
Q gi|254780217|r 226 KILH 229 (347)
Q Consensus 226 ~ll~ 229 (347)
T Consensus 285 gaL~ 288 (408)
T COG0593 285 GALN 288 (408)
T ss_pred HHHH
T ss_conf 9999