HHsearch alignment for GI: 254780217 and conserved domain: COG0593

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair].
Probab=98.31  E-value=0.00043  Score=52.60  Aligned_cols=191  Identities=15%  Similarity=0.138  Sum_probs=115.4

Q ss_pred             CCCCCCCCHHHHCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHH
Q ss_conf             6555587565610929999999999982-889816631179898889999999999817799886431210126788679
Q gi|254780217|r    3 DRAFDPVYNQRLFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV   81 (347)
Q Consensus         3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~   81 (347)
T Consensus        81 ~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~-------------------  141 (408)
T COG0593          81 NPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANG-------------------  141 (408)
T ss_pred             CCCCCHHHEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-------------------
T ss_conf             9888554220477449999999998756688689579987999978999999999998629-------------------


Q ss_pred             HHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHH--HHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHC
Q ss_conf             999678987545300100010134212323788755--443102221111210353220554240--0014567776630
Q gi|254780217|r   82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEP  157 (347)
Q Consensus        82 ~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~--l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEP  157 (347)
T Consensus       142 ------~~a~v~y~~se--~f~~~-----~v~a~~~~~~~~F---k~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l  204 (408)
T COG0593         142 ------PNARVVYLTSE--DFTND-----FVKALRDNEMEKF---KEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNAL  204 (408)
T ss_pred             ------CCCEEEECCHH--HHHHH-----HHHHHHHHHHHHH---HHHH-CCCEEEECHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             ------98648850489--98999-----9999885048888---8764-267355513867567715799999999988


Q ss_pred             CCCC-CEEEEECCC-C---CCCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf             3434-167650443-3---5730252036---9886479998999999997----2788896789999997598978999
Q gi|254780217|r  158 PQKV-LFILISHAS-P---TILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAI  225 (347)
Q Consensus       158 p~~t-~fiLit~~~-~---~il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~  225 (347)
T Consensus       205 ~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLe  284 (408)
T COG0593         205 LENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELE  284 (408)
T ss_pred             HHCCCEEEEECCCCCHHHCCCCHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHH
T ss_conf             85088799970788322110358899898630577527988899999999999865888887999999997003099999


Q ss_pred             HHHC
Q ss_conf             8814
Q gi|254780217|r  226 KILH  229 (347)
Q Consensus       226 ~ll~  229 (347)
T Consensus       285 gaL~  288 (408)
T COG0593         285 GALN  288 (408)
T ss_pred             HHHH
T ss_conf             9999