HHsearch alignment for GI: 254780217 and conserved domain: COG1466

>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair].
Probab=97.36  E-value=0.023  Score=38.71  Aligned_cols=168  Identities=13%  Similarity=0.082  Sum_probs=108.6

Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf             99999982889816631179898889999999999817799886431210126788679999678987545300100010
Q gi|254780217|r   23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK  102 (347)
Q Consensus        23 ~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k  102 (347)
T Consensus         5 ~~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~---------------------------~~~~~~~~~~~~-~~-   55 (334)
T COG1466           5 ELAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRAL---------------------------ADGFDENYSFFD-DS-   55 (334)
T ss_pred             HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---------------------------HCCCCEEEEECC-CC-
T ss_conf             8999861478751899966864689999999999734---------------------------315661345436-55-


Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-HHHHHHHHHHHHHCC-CCCCEEEEECCCC---CCCHHH
Q ss_conf             13421232378875544310222111121035322055424-000145677766303-4341676504433---573025
Q gi|254780217|r  103 TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-RNAANALLKSLEEPP-QKVLFILISHASP---TILSTI  177 (347)
Q Consensus       103 ~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-~~AaNALLK~LEEPp-~~t~fiLit~~~~---~il~TI  177 (347)
T Consensus        56 ---------~~~~~~~~~~~~s~~lF~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~  126 (334)
T COG1466          56 ---------ELDWADLLSELESPSLFGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWL  126 (334)
T ss_pred             ---------CCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf             ---------56899999886276877888579987765456642789999985368978689999618875277878988


Q ss_pred             HCE--EEEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             203--69886479998999999997----2788896789999997598978999881
Q gi|254780217|r  178 RSR--CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKIL  228 (347)
Q Consensus       178 ~SR--c~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll  228 (347)
T Consensus       127 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei  183 (334)
T COG1466         127 KKLAKAVVVECKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEI  183 (334)
T ss_pred             HHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             874447346625887788999999999991898899999999998588299999999