HHsearch alignment for GI: 254780217 and conserved domain: COG1466
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair].
Probab=97.36 E-value=0.023 Score=38.71 Aligned_cols=168 Identities=13% Similarity=0.082 Sum_probs=108.6
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf 99999982889816631179898889999999999817799886431210126788679999678987545300100010
Q gi|254780217|r 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK 102 (347)
Q Consensus 23 ~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k 102 (347)
T Consensus 5 ~~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~---------------------------~~~~~~~~~~~~-~~- 55 (334)
T COG1466 5 ELAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRAL---------------------------ADGFDENYSFFD-DS- 55 (334)
T ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---------------------------HCCCCEEEEECC-CC-
T ss_conf 8999861478751899966864689999999999734---------------------------315661345436-55-
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-HHHHHHHHHHHHHCC-CCCCEEEEECCCC---CCCHHH
Q ss_conf 13421232378875544310222111121035322055424-000145677766303-4341676504433---573025
Q gi|254780217|r 103 TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-RNAANALLKSLEEPP-QKVLFILISHASP---TILSTI 177 (347)
Q Consensus 103 ~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-~~AaNALLK~LEEPp-~~t~fiLit~~~~---~il~TI 177 (347)
T Consensus 56 ---------~~~~~~~~~~~~s~~lF~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~ 126 (334)
T COG1466 56 ---------ELDWADLLSELESPSLFGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWL 126 (334)
T ss_pred ---------CCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf ---------56899999886276877888579987765456642789999985368978689999618875277878988
Q ss_pred HCE--EEEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 203--69886479998999999997----2788896789999997598978999881
Q gi|254780217|r 178 RSR--CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKIL 228 (347)
Q Consensus 178 ~SR--c~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll 228 (347)
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei 183 (334)
T COG1466 127 KKLAKAVVVECKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEI 183 (334)
T ss_pred HHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 874447346625887788999999999991898899999999998588299999999