HHsearch alignment for GI: 254780217 and conserved domain: COG2256

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=99.93  E-value=3.1e-24  Score=214.77  Aligned_cols=183  Identities=23%  Similarity=0.324  Sum_probs=155.6

Q ss_pred             CCCCCCCCCHHHHCCHHHHHH---HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf             665555875656109299999---99999982889816631179898889999999999817799886431210126788
Q gi|254780217|r    2 IDRAFDPVYNQRLFGHEDIEK---FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS   78 (347)
Q Consensus         2 ~~~~~~p~~~~~i~G~~~~~~---~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~   78 (347)
T Consensus        14 LA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~S-mIl~GPPG~GKTTlA~liA~~~~~------------------   74 (436)
T COG2256          14 LAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHS-MILWGPPGTGKTTLARLIAGTTNA------------------   74 (436)
T ss_pred             HHHHHCCCCHHHHCCHHHHHCCCCHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCC------------------
T ss_conf             6777097778785571866189943899996499860-577789998888999999876177------------------


Q ss_pred             HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf             67999967898754530010001013421232378875544310222111121035322055424000145677766303
Q gi|254780217|r   79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP  158 (347)
Q Consensus        79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp  158 (347)
T Consensus        75 ------------~f~~~sAv----------~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~--  130 (436)
T COG2256          75 ------------AFEALSAV----------TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN--  130 (436)
T ss_pred             ------------CEEEECCC----------CCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHCC--
T ss_conf             ------------66995152----------346799999999999987258834998722533374456551033248--


Q ss_pred             CCCCEEEE---ECCCC-CCCHHHHCEEEEEECCCCCHHHHHHHHHHH------C-----CCCCHHHHHHHHHHCCCCHHH
Q ss_conf             43416765---04433-573025203698864799989999999972------7-----888967899999975989789
Q gi|254780217|r  159 QKVLFILI---SHASP-TILSTIRSRCLSIKFNSLSENNLYKALEQL------K-----IMGWDSKRDFVKIAAYGSVAR  223 (347)
Q Consensus       159 ~~t~fiLi---t~~~~-~il~TI~SRc~~i~f~~l~~~~~~~~L~~~------~-----~~~~~~~~~~~~~~s~Gs~~~  223 (347)
T Consensus       131 --G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~  208 (436)
T COG2256         131 --GTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR  208 (436)
T ss_pred             --CEEEEEECCCCCCCEEECHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHH
T ss_conf             --868999626789871403888611041565169989999999999865413777655668889999999862861999


Q ss_pred             HHHHHC
Q ss_conf             998814
Q gi|254780217|r  224 AIKILH  229 (347)
Q Consensus       224 A~~ll~  229 (347)
T Consensus       209 aLN~LE  214 (436)
T COG2256         209 ALNLLE  214 (436)
T ss_pred             HHHHHH
T ss_conf             988999