HHsearch alignment for GI: 254780217 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=99.93 E-value=3.1e-24 Score=214.77 Aligned_cols=183 Identities=23% Similarity=0.324 Sum_probs=155.6
Q ss_pred CCCCCCCCCHHHHCCHHHHHH---HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 665555875656109299999---99999982889816631179898889999999999817799886431210126788
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEK---FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~---~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~ 78 (347)
T Consensus 14 LA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~S-mIl~GPPG~GKTTlA~liA~~~~~------------------ 74 (436)
T COG2256 14 LAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHS-MILWGPPGTGKTTLARLIAGTTNA------------------ 74 (436)
T ss_pred HHHHHCCCCHHHHCCHHHHHCCCCHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCC------------------
T ss_conf 6777097778785571866189943899996499860-577789998888999999876177------------------
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 67999967898754530010001013421232378875544310222111121035322055424000145677766303
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp 158 (347)
T Consensus 75 ------------~f~~~sAv----------~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~-- 130 (436)
T COG2256 75 ------------AFEALSAV----------TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN-- 130 (436)
T ss_pred ------------CEEEECCC----------CCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHCC--
T ss_conf ------------66995152----------346799999999999987258834998722533374456551033248--
Q ss_pred CCCCEEEE---ECCCC-CCCHHHHCEEEEEECCCCCHHHHHHHHHHH------C-----CCCCHHHHHHHHHHCCCCHHH
Q ss_conf 43416765---04433-573025203698864799989999999972------7-----888967899999975989789
Q gi|254780217|r 159 QKVLFILI---SHASP-TILSTIRSRCLSIKFNSLSENNLYKALEQL------K-----IMGWDSKRDFVKIAAYGSVAR 223 (347)
Q Consensus 159 ~~t~fiLi---t~~~~-~il~TI~SRc~~i~f~~l~~~~~~~~L~~~------~-----~~~~~~~~~~~~~~s~Gs~~~ 223 (347)
T Consensus 131 --G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 131 --GTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred --CEEEEEECCCCCCCEEECHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHH
T ss_conf --868999626789871403888611041565169989999999999865413777655668889999999862861999
Q ss_pred HHHHHC
Q ss_conf 998814
Q gi|254780217|r 224 AIKILH 229 (347)
Q Consensus 224 A~~ll~ 229 (347)
T Consensus 209 aLN~LE 214 (436)
T COG2256 209 ALNLLE 214 (436)
T ss_pred HHHHHH
T ss_conf 988999