HHsearch alignment for GI: 254780217 and conserved domain: COG3899

Probab=95.98  E-value=0.085  Score=34.11  Aligned_cols=211  Identities=16%  Similarity=0.137  Sum_probs=113.0

Q ss_pred             HHCCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCC---C-CCCHHHHHH--
Q ss_conf             61092999999999998288--981663117989888999999999981779988643121012---6-788679999--
Q gi|254780217|r   13 RLFGHEDIEKFLSQYYCSGR--MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP---D-PCSPFVKQM--   84 (347)
Q Consensus        13 ~i~G~~~~~~~L~~~~~~~~--l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~---~-~~~~~~~~i--   84 (347)
T Consensus         1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~--~~~~i~~~f~q~~~~ipl~~lvq~~r~   78 (849)
T COG3899           1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ--RGYFIKGKFDQFERNIPLSPLVQAFRD   78 (849)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             978707689999999999837771699987558774899999999987424--006417104765689855899999999


Q ss_pred             -HC--CCCCCEEEECCCCHHHC---CCCCCCCCHHH-----------------------HH---HHHHHCCCCCCCCCCH
Q ss_conf             -67--89875453001000101---34212323788-----------------------75---5443102221111210
Q gi|254780217|r   85 -AS--HALHDFLYLSYSLNPKT---GKWRTVITVDE-----------------------IR---RIRYFLSLTANTGYWR  132 (347)
Q Consensus        85 -~~--~~hpd~~~i~~~~~~k~---~~~~~~I~vd~-----------------------IR---~l~~~~~~~~~~~~~K  132 (347)
T Consensus        79 l~~~ll~~~~~~~--~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl  156 (849)
T COG3899          79 LMGQLLSESDTRI--LSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL  156 (849)
T ss_pred             HHHHHHHCCCCHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             9987752566057--99999999862644303786269897304888511005822467899999999999997355984


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHCC-----CCCCEEEEECCCCCCCHHHHCEE--EEEECCCCCHHHHHHHHHHHCC--
Q ss_conf             35322055424000145677766303-----43416765044335730252036--9886479998999999997278--
Q gi|254780217|r  133 VIMIDPVDGMNRNAANALLKSLEEPP-----QKVLFILISHASPTILSTIRSRC--LSIKFNSLSENNLYKALEQLKI--  203 (347)
Q Consensus       133 i~IId~ad~ln~~AaNALLK~LEEPp-----~~t~fiLit~~~~~il~TI~SRc--~~i~f~~l~~~~~~~~L~~~~~--  203 (347)
T Consensus       157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v-~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~  235 (849)
T COG3899         157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEV-LLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT  235 (849)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCHHHHHCCCC-CCCCCCCCCHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCC
T ss_conf             99971455357668999999999631003323641-03677763026776347864357516677366999999982776


Q ss_pred             -CCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             -8896789999997598978999881
Q gi|254780217|r  204 -MGWDSKRDFVKIAAYGSVARAIKIL  228 (347)
Q Consensus       204 -~~~~~~~~~~~~~s~Gs~~~A~~ll  228 (347)
T Consensus       236 ~~~~~p~~~~i~~kt~GnPfFi~e~l  261 (849)
T COG3899         236 KLLPAPLLELIFEKTKGNPFFIEEFL  261 (849)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCHHHHH
T ss_conf             54565579999998358976599999