HHsearch alignment for GI: 254780217 and conserved domain: COG4988

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].
Probab=93.29  E-value=0.22  Score=30.80  Aligned_cols=63  Identities=13%  Similarity=0.199  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHH-HHHHCCCCCCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf             12323788755-44310222111121035322055-424000145677766303434167650443357
Q gi|254780217|r  107 RTVITVDEIRR-IRYFLSLTANTGYWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTI  173 (347)
Q Consensus       107 ~~~I~vd~IR~-l~~~~~~~~~~~~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~i  173 (347)
T Consensus       454 G~~LSgGQ~QRlaLARAll~----~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~  518 (559)
T COG4988         454 GAGLSGGQAQRLALARALLS----PASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDA  518 (559)
T ss_pred             CCCCCHHHHHHHHHHHHHCC----CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCHHHH
T ss_conf             88778999999999998558----888898548756798767999999999997278699997673778