HHsearch alignment for GI: 254780217 and conserved domain: COG5635
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms].
Probab=91.79 E-value=0.26 Score=30.19 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=71.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH-H
Q ss_conf 663117989888999999999981779988643121012678867999967898754530010001013421232378-8
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD-E 114 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd-~ 114 (347)
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~---------------------~~~~vpi~~~l~~-~~~~~~~~~q-~~~~~~ 280 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTL---------------------EPEDVPIFLLLNA-FALARKFEKQ-LSLIDY 280 (824)
T ss_pred HEEEECCCCCCHHHHHHHHHHHHHHCCC---------------------CCCCCCEEEEECC-HHHHHHHHHC-CCHHHH
T ss_conf 3334468887626799999999741525---------------------6656773444231-5654444521-649999
Q ss_pred HHHHHHHCC---------CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH----HCCCCCCEEEEECCCCCCCHHHHCEE
Q ss_conf 755443102---------22111121035322055424000145677766----30343416765044335730252036
Q gi|254780217|r 115 IRRIRYFLS---------LTANTGYWRVIMIDPVDGMNRNAANALLKSLE----EPPQKVLFILISHASPTILSTIRSRC 181 (347)
Q Consensus 115 IR~l~~~~~---------~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE----EPp~~t~fiLit~~~~~il~TI~SRc 181 (347)
T Consensus 281 l~~~~~~~~~~~~~~~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~-~~~~iltc-R~~~-~~~~~~~f 357 (824)
T COG5635 281 LAEELFSQGIAKQLIEAHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYP-DAQVLLTC-RPDT-YKEEFKGF 357 (824)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCHHCCCCHHHHHHHHHHHHHCCC-CCCEEEEE-CCCC-CHHHHHHH
T ss_conf 999985146765004689999842775764033330122333789999987753057-77279982-6631-02156543
Q ss_pred EEEECCCCCHHHHHHHHH
Q ss_conf 988647999899999999
Q gi|254780217|r 182 LSIKFNSLSENNLYKALE 199 (347)
Q Consensus 182 ~~i~f~~l~~~~~~~~L~ 199 (347)
T Consensus 358 ~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 358 AVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHHHHCCHHHHHHHHH
T ss_conf 231024244788998999