HHsearch alignment for GI: 254780217 and conserved domain: PRK00080
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=99.62 E-value=1.2e-14 Score=137.70 Aligned_cols=181 Identities=19% Similarity=0.277 Sum_probs=128.9
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHCCC-----CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC
Q ss_conf 655558756561092999999999998288-----981663117989888999999999981779988643121012678
Q gi|254780217|r 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGR-----MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 (347)
Q Consensus 3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~-----l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~ 77 (347)
T Consensus 16 ~~~lRP~~l~efiGQ~~i~~~L~v~i~Aak~r~e~ldH-~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~le------ 88 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDH-VLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------ 88 (328)
T ss_pred CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCC------
T ss_conf 00559885766359599999999999999964999880-57658899889999999999868881562450016------
Q ss_pred CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH-
Q ss_conf 8679999678987545300100010134212323788755443102221111210353220554240001456777663-
Q gi|254780217|r 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE- 156 (347)
Q Consensus 78 ~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE- 156 (347)
T Consensus 89 ------------------------k---------~~DL~~iLt~------l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf 129 (328)
T PRK00080 89 ------------------------K---------AGDLAALLTN------LEEGDVLFIDEIHRLSPVVEEILYPAMEDF 129 (328)
T ss_pred ------------------------C---------HHHHHHHHHH------CCCCCEEEEHHHHHCCHHHHHHHHHHHHHC
T ss_conf ------------------------7---------4789999960------887876765065324888998857987752
Q ss_pred ---------CCCC--------CCEEEEECCCCCCCHHHHCEE-EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHH
Q ss_conf ---------0343--------416765044335730252036-9886479998999999997----27888967899999
Q gi|254780217|r 157 ---------PPQK--------VLFILISHASPTILSTIRSRC-LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVK 214 (347)
Q Consensus 157 ---------Pp~~--------t~fiLit~~~~~il~TI~SRc-~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~ 214 (347)
T Consensus 130 ~iDi~iG~g~~Ar~~~i~L~pFTLIGATTr~g~Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa~~l~i~i~~~~~~eIA 209 (328)
T PRK00080 130 RLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGIEIDEEGALEIA 209 (328)
T ss_pred EEEEEECCCCCCEEEECCCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 34578647865324555899834740136766577678975793366345899999999999999839887899999999
Q ss_pred HHCCCCHHHHHHHHC
Q ss_conf 975989789998814
Q gi|254780217|r 215 IAAYGSVARAIKILH 229 (347)
Q Consensus 215 ~~s~Gs~~~A~~ll~ 229 (347)
T Consensus 210 ~rSRGTPRiAnrLLr 224 (328)
T PRK00080 210 RRSRGTPRIANRLLR 224 (328)
T ss_pred HHCCCCCHHHHHHHH
T ss_conf 863898399999999