HHsearch alignment for GI: 254780217 and conserved domain: PRK00149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed.
Probab=98.21 E-value=0.00046 Score=52.36 Aligned_cols=183 Identities=14% Similarity=0.220 Sum_probs=110.9
Q ss_pred HHH-HCCHHHHHHHHH-HHH--HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHC
Q ss_conf 656-109299999999-999--8288981663117989888999999999981779988643121012678867999967
Q gi|254780217|r 11 NQR-LFGHEDIEKFLS-QYY--CSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMAS 86 (347)
Q Consensus 11 ~~~-i~G~~~~~~~L~-~~~--~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (347)
T Consensus 118 FdnFVvG~sN~lA~aAA~~Va~~pg~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~--------------------- 176 (447)
T PRK00149 118 FDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNA--------------------- 176 (447)
T ss_pred CCCCEECCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC---------------------
T ss_conf 32622269859999999999837676778558977998878899999999999858997---------------------
Q ss_pred CCCCCEEEECCCCHHHCCCCCCCC---CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--HHHHHHHHHHHHHCC-CC
Q ss_conf 898754530010001013421232---378875544310222111121035322055424--000145677766303-43
Q gi|254780217|r 87 HALHDFLYLSYSLNPKTGKWRTVI---TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN--RNAANALLKSLEEPP-QK 160 (347)
Q Consensus 87 ~~hpd~~~i~~~~~~k~~~~~~~I---~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln--~~AaNALLK~LEEPp-~~ 160 (347)
T Consensus 177 ----~v~Y~tae--~F~~~~v~al~~~~~~~Fr~---~y--r----~~DvLliDDiqfl~gk~~tqeeff~~fn~l~~~~ 241 (447)
T PRK00149 177 ----KVVYVSSE--KFTNDFVKALRNNAMEEFKE---KY--R----SVDVLLIDDIQFLAGKEKTQEEFFHTFNALHENN 241 (447)
T ss_pred ----EEEEEEHH--HHHHHHHHHHHCCCHHHHHH---HH--H----CCCEEEECHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf ----28995499--99999999985186999999---99--7----2885432148886055779999999999999849
Q ss_pred CCEEEEECCCC----CCCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 41676504433----5730252036---9886479998999999997----27888967899999975989789998814
Q gi|254780217|r 161 VLFILISHASP----TILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 161 t~fiLit~~~~----~il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
T Consensus 242 kqiv~tsd~~P~~l~~l~~rL~SRf~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~l~~~v~~~iA~~~~~nvR~LeGal~ 321 (447)
T PRK00149 242 KQIVITSDRPPKELEGLEDRLRSRFEWGLTVDIEPPDLETRVAILQKKAEEEGINLPNEVLEFIAKRIRSNIRELEGALN 321 (447)
T ss_pred CEEEEECCCCHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 96899578896765651177886763762651059999999999999999728999989999999712688999999999