HHsearch alignment for GI: 254780217 and conserved domain: PRK00771

>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=95.67  E-value=0.037  Score=37.00  Aligned_cols=131  Identities=16%  Similarity=0.139  Sum_probs=63.5

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHH-HHHC-CCCCCEEEECCCCHHHCCCCCC
Q ss_conf             8898166311798988899999999998177998864312101267886799-9967-8987545300100010134212
Q gi|254780217|r   31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK-QMAS-HALHDFLYLSYSLNPKTGKWRT  108 (347)
Q Consensus        31 ~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~-~i~~-~~hpd~~~i~~~~~~k~~~~~~  108 (347)
T Consensus        94 ~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g---~k-v~lvaaDt~RpaA~eQL~~la~~~~v~~~~~~----~~~d--  163 (433)
T PRK00771         94 LLKPQTILLVGLQGSGKTTTAAKLARYFQKKG---LK-VGVICADTWRPGAYEQLKQLCEKINVPFYGDP----KEKD--  163 (433)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CC-EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCC----CCCC--
T ss_conf             68985899973788978999999999999779---94-67850678836899999999986388731788----9999--


Q ss_pred             CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHH--HHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHC
Q ss_conf             323788755443102221111210353220554240001--456777663-03434167650443357302520
Q gi|254780217|r  109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA--NALLKSLEE-PPQKVLFILISHASPTILSTIRS  179 (347)
Q Consensus       109 ~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~Aa--NALLK~LEE-Pp~~t~fiLit~~~~~il~TI~S  179 (347)
T Consensus       164 --p~~i~~~a~~~~k------~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~  229 (433)
T PRK00771        164 --AVKIVKEGLEKLK------KVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIGQQASEQAKA  229 (433)
T ss_pred             --HHHHHHHHHHHHC------CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH
T ss_conf             --9999999999845------69889997765210409999999999877579768998654422678999999