HHsearch alignment for GI: 254780217 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=95.67 E-value=0.037 Score=37.00 Aligned_cols=131 Identities=16% Similarity=0.139 Sum_probs=63.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHH-HHHC-CCCCCEEEECCCCHHHCCCCCC
Q ss_conf 8898166311798988899999999998177998864312101267886799-9967-8987545300100010134212
Q gi|254780217|r 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK-QMAS-HALHDFLYLSYSLNPKTGKWRT 108 (347)
Q Consensus 31 ~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~-~i~~-~~hpd~~~i~~~~~~k~~~~~~ 108 (347)
T Consensus 94 ~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g---~k-v~lvaaDt~RpaA~eQL~~la~~~~v~~~~~~----~~~d-- 163 (433)
T PRK00771 94 LLKPQTILLVGLQGSGKTTTAAKLARYFQKKG---LK-VGVICADTWRPGAYEQLKQLCEKINVPFYGDP----KEKD-- 163 (433)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CC-EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCC----CCCC--
T ss_conf 68985899973788978999999999999779---94-67850678836899999999986388731788----9999--
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHH--HHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHC
Q ss_conf 323788755443102221111210353220554240001--456777663-03434167650443357302520
Q gi|254780217|r 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA--NALLKSLEE-PPQKVLFILISHASPTILSTIRS 179 (347)
Q Consensus 109 ~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~Aa--NALLK~LEE-Pp~~t~fiLit~~~~~il~TI~S 179 (347)
T Consensus 164 --p~~i~~~a~~~~k------~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~ 229 (433)
T PRK00771 164 --AVKIVKEGLEKLK------KVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIGQQASEQAKA 229 (433)
T ss_pred --HHHHHHHHHHHHC------CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH
T ss_conf --9999999999845------69889997765210409999999999877579768998654422678999999