HHsearch alignment for GI: 254780217 and conserved domain: PRK04132

>PRK04132 replication factor C small subunit; Provisional.
Probab=91.31  E-value=0.21  Score=30.91  Aligned_cols=145  Identities=26%  Similarity=0.421  Sum_probs=112.1

Q ss_pred             CCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHH
Q ss_conf             55558756561092999999999998288981663117989888999999999981779988643121012678867999
Q gi|254780217|r    4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ   83 (347)
Q Consensus         4 ~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~   83 (347)
T Consensus        17 EKYRPk~LddIVgQehIVkRLK~YVk~~smPH-LLFaGPPGvGKt~~al~lar~l~ge~------------------wr-   76 (863)
T PRK04132         17 EKYRPQRLDEIVGQDHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGEN------------------WR-   76 (863)
T ss_pred             HHCCCCCHHHHCCHHHHHHHHHHHHCCCCCCC-EEECCCCCCCCHHHHHHHHHHHHCCH------------------HH-
T ss_conf             53187616552274999999998862388854-43048998771447888888761431------------------45-


Q ss_pred             HHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCC-CCC-CCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf             96789875453001000101342123237887554431022-211-1121035322055424000145677766303434
Q gi|254780217|r   84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL-TAN-TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV  161 (347)
Q Consensus        84 i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~-~~~-~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t  161 (347)
T Consensus        77 ------~nflelna-s~~~--------~~~~~~~~v~~~~~~~p~~~~~~k~~~~de~~~l~~d~~~~~r~~~e~~~~~~  141 (863)
T PRK04132         77 ------HNFLELNA-SDER--------GINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNV  141 (863)
T ss_pred             ------HHHHHHCC-CCCC--------CCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             ------55664144-2123--------63488887775068664578654246443656401011577876677742124


Q ss_pred             CEEEEECCCCCCCHHHHCEEEE
Q ss_conf             1676504433573025203698
Q gi|254780217|r  162 LFILISHASPTILSTIRSRCLS  183 (347)
Q Consensus       162 ~fiLit~~~~~il~TI~SRc~~  183 (347)
T Consensus       142 ~~~~~~~t~~~ki~t~~~relk  163 (863)
T PRK04132        142 RFILSCLTGDAKIYTPDERELK  163 (863)
T ss_pred             HHHHHHCCCCCEEECCCCCEEE
T ss_conf             4433313465126603564566