HHsearch alignment for GI: 254780217 and conserved domain: PRK04132
>PRK04132 replication factor C small subunit; Provisional.
Probab=91.31 E-value=0.21 Score=30.91 Aligned_cols=145 Identities=26% Similarity=0.421 Sum_probs=112.1
Q ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHH
Q ss_conf 55558756561092999999999998288981663117989888999999999981779988643121012678867999
Q gi|254780217|r 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 (347)
Q Consensus 4 ~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~ 83 (347)
T Consensus 17 EKYRPk~LddIVgQehIVkRLK~YVk~~smPH-LLFaGPPGvGKt~~al~lar~l~ge~------------------wr- 76 (863)
T PRK04132 17 EKYRPQRLDEIVGQDHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGEN------------------WR- 76 (863)
T ss_pred HHCCCCCHHHHCCHHHHHHHHHHHHCCCCCCC-EEECCCCCCCCHHHHHHHHHHHHCCH------------------HH-
T ss_conf 53187616552274999999998862388854-43048998771447888888761431------------------45-
Q ss_pred HHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCC-CCC-CCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 96789875453001000101342123237887554431022-211-1121035322055424000145677766303434
Q gi|254780217|r 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL-TAN-TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 (347)
Q Consensus 84 i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~-~~~-~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t 161 (347)
T Consensus 77 ------~nflelna-s~~~--------~~~~~~~~v~~~~~~~p~~~~~~k~~~~de~~~l~~d~~~~~r~~~e~~~~~~ 141 (863)
T PRK04132 77 ------HNFLELNA-SDER--------GINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNV 141 (863)
T ss_pred ------HHHHHHCC-CCCC--------CCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf ------55664144-2123--------63488887775068664578654246443656401011577876677742124
Q ss_pred CEEEEECCCCCCCHHHHCEEEE
Q ss_conf 1676504433573025203698
Q gi|254780217|r 162 LFILISHASPTILSTIRSRCLS 183 (347)
Q Consensus 162 ~fiLit~~~~~il~TI~SRc~~ 183 (347)
T Consensus 142 ~~~~~~~t~~~ki~t~~~relk 163 (863)
T PRK04132 142 RFILSCLTGDAKIYTPDERELK 163 (863)
T ss_pred HHHHHHCCCCCEEECCCCCEEE
T ss_conf 4433313465126603564566