HHsearch alignment for GI: 254780217 and conserved domain: PRK04296
>PRK04296 thymidine kinase; Provisional.
Probab=90.42 E-value=0.52 Score=27.78 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=53.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHH---------CCCCC
Q ss_conf 631179898889999999999817799886431210126788679999678987545300100010---------13421
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK---------TGKWR 107 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k---------~~~~~ 107 (347)
T Consensus 5 ~~i~GpMfSGKTteLi~~~~~~~~~-------------------------g--kkvl~~kp~~D~Ry~~~~I~Sh~g~~~ 57 (197)
T PRK04296 5 YFIYGAMNSGKSTELLQRAYNYEER-------------------------G--MKVLVFTPAIDDRYGEGKVVSRIGLSR 57 (197)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHC-------------------------C--CEEEEEEECCCCCCCCCCEECCCCCEE
T ss_conf 9999342788899999999999987-------------------------9--959999853446577785786789834
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 23237887554431022211112103532205542400014567776630343
Q gi|254780217|r 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 108 ~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
T Consensus 58 ~~~~v~~~~~i~~~~~~~~~~~~~dvI~IDEaQFf~~~~i~~~~~~~~~~~~~ 110 (197)
T PRK04296 58 EAILISSDTDIFELIEEEHEGGKIDCVLIDEAQFLDKEQVVQLAEVVDDLGIP 110 (197)
T ss_pred EEEEECCHHHHHHHHHHHHCCCCCCEEEECCHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 68994878999999987630478568997202127989999999999831858