HHsearch alignment for GI: 254780217 and conserved domain: PRK05022
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional.
Probab=97.70 E-value=0.0013 Score=48.73 Aligned_cols=188 Identities=16% Similarity=0.213 Sum_probs=97.9
Q ss_pred HHHHCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH--HCCCCCCCHHHHHHH
Q ss_conf 65610929999999999982---8898166311798988899999999998177998864312--101267886799996
Q gi|254780217|r 11 NQRLFGHEDIEKFLSQYYCS---GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR--MCNPDPCSPFVKQMA 85 (347)
Q Consensus 11 ~~~i~G~~~~~~~L~~~~~~---~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~--~~~~~~~~~~~~~i~ 85 (347)
T Consensus 185 ~~elIG~S~~m~~l~~~i~~vA~sd~p--VLI~GEtGTGKelvAr~IH~----~S~R~~~Pfv~vNCaalpe~----l~E 254 (510)
T PRK05022 185 QGEMIGQSPAMQQLKKEIEVVAASDLN--VLITGETGVGKELVARAIHQ----ASPRAVKPLVYLNCAALPES----LAE 254 (510)
T ss_pred CCCEEECCHHHHHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHHHH----CCCCCCCCCEEEECCCCCHH----HHH
T ss_conf 897520899999999999999689998--89889898139999999996----68878998578889999856----789
Q ss_pred CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC--------
Q ss_conf 789875453001000101342123237887554431022211112103532205542400014567776630--------
Q gi|254780217|r 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP-------- 157 (347)
Q Consensus 86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP-------- 157 (347)
T Consensus 255 s----eLF--Gh---~k-GaFtGA-----~~~r~G~fe~--A~gG--TLfLDEI~~Lpl~~Q~KLLrvLq~g~iqrvG~~ 315 (510)
T PRK05022 255 S----ELF--GH---VK-GAFTGA-----ISNRSGKFEL--ADGG--TLFLDEIGELPLALQAKLLRVLQYGEIQRVGSD 315 (510)
T ss_pred H----HHC--CC---CC-CCCCCC-----CCCCCCCEEE--CCCC--EEEEECHHHCCHHHHHHHHHHHHCCEEEECCCC
T ss_conf 9----865--97---77-886886-----5567881017--7898--798757454999999999999847958855899
Q ss_pred ---CCCCCEEEEECCCCCCCHHHHC-----------EEEEEECCCCCH--HHHHH----HHHHH-------CCCCCHHHH
Q ss_conf ---3434167650443357302520-----------369886479998--99999----99972-------788896789
Q gi|254780217|r 158 ---PQKVLFILISHASPTILSTIRS-----------RCLSIKFNSLSE--NNLYK----ALEQL-------KIMGWDSKR 210 (347)
Q Consensus 158 ---p~~t~fiLit~~~~~il~TI~S-----------Rc~~i~f~~l~~--~~~~~----~L~~~-------~~~~~~~~~ 210 (347)
T Consensus 316 ~~~~vdvRIIAATnr--dL~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl 393 (510)
T PRK05022 316 RSLRVDVRVIAATNR--DLREEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQ 393 (510)
T ss_pred CEEEEEEEEEEECCC--CHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 466666899960783--599998839638999987620403480865555409999999999999982989898889999
Q ss_pred HHHHHHC-CCCHHHHHHHHC
Q ss_conf 9999975-989789998814
Q gi|254780217|r 211 DFVKIAA-YGSVARAIKILH 229 (347)
Q Consensus 211 ~~~~~~s-~Gs~~~A~~ll~ 229 (347)
T Consensus 394 ~~L~~Y~WPGNVRELenvIe 413 (510)
T PRK05022 394 AALLQYDWPGNVRELEHVIS 413 (510)
T ss_pred HHHHCCCCCCHHHHHHHHHH
T ss_conf 99970999978999999999