HHsearch alignment for GI: 254780217 and conserved domain: PRK05563

>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00  E-value=0  Score=461.63  Aligned_cols=215  Identities=28%  Similarity=0.438  Sum_probs=204.8

Q ss_pred             CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf             96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r    1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF   80 (347)
Q Consensus         1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~   80 (347)
T Consensus         5 aLyrkyRP~~f~dvvgQ~~v~~~L~n~i~~~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~------   78 (541)
T PRK05563          5 ALYREWRPRTFEDVVGQEHITTTLKNQIINNRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEI------   78 (541)
T ss_pred             HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf             78876489977662484999999999998499320453038799589999999999957999888985751488------


Q ss_pred             HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf             99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r   81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK  160 (347)
Q Consensus        81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~  160 (347)
T Consensus        79 C~~i~~g~~~Dv~Eidaas~---------~gvd~iR~~~~~~~~~p~~~~~Kv~IiDEvhmls~~a~nallKtlEePp~~  149 (541)
T PRK05563         79 CKKINEGLLMDVIEIDAASN---------NGVDDIREIIENVKYPPQEGKYKVYIMDEVHMLSQGAVNAFLKTLEEPPSN  149 (541)
T ss_pred             HHHHHCCCCCCEEEECCCCC---------CCHHHHHHHHHHCEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             99985689887366244444---------788999999976104876787059999772338999999999998548777


Q ss_pred             CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHH----HHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf             416765044335730252036988647999899999999----7278889678999999759897899988145
Q gi|254780217|r  161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY  230 (347)
Q Consensus       161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~----~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~  230 (347)
T Consensus       150 ~~Filatte~~ki~~tI~SRcq~f~f~~i~~~~i~~~L~~I~~~E~i~~~~~al~lIa~~s~GsmRDAlslLdQ  223 (541)
T PRK05563        150 VIFILATTDPQKLPITILSRCQRFDFKRIKVKDIFKRLRKIVEEQGIFADDKSLNLIARMSDGAMRDALSILDQ  223 (541)
T ss_pred             CEEEEECCCCCCCCHHHHHHEEEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             56999769844274556742135775438999999999999998499987899999997459977889999999