HHsearch alignment for GI: 254780217 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=98.42 E-value=1.6e-05 Score=64.03 Aligned_cols=177 Identities=16% Similarity=0.210 Sum_probs=109.3
Q ss_pred CCHHHHC-C-HHHHHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 7565610-9-299999999999828--89816631179898889999999999817799886431210126788679999
Q gi|254780217|r 9 VYNQRLF-G-HEDIEKFLSQYYCSG--RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQM 84 (347)
Q Consensus 9 ~~~~~i~-G-~~~~~~~L~~~~~~~--~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i 84 (347)
T Consensus 16 ~tfdnFi~g~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~------------------------ 71 (234)
T PRK05642 16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQ------------------------ 71 (234)
T ss_pred CCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH------------------------
T ss_conf 77303571875999999999876067877883899889999889999999999980------------------------
Q ss_pred HCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHCC-CCC
Q ss_conf 678987545300100010134212323788755443102221111210353220554240--00145677766303-434
Q gi|254780217|r 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEPP-QKV 161 (347)
Q Consensus 85 ~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEPp-~~t 161 (347)
T Consensus 72 ---~~~~~~yl~~~~~-----------~~~~~~~~~~------l~~~d~l~IDDi~~i~g~~~~e~~lF~l~N~~~~~~~ 131 (234)
T PRK05642 72 ---RGEPAVYLPLAEL-----------LDRGPELLDN------LEQYELVCIDDLDVIAGKADWEEALFHLFNRLRDSGR 131 (234)
T ss_pred ---CCCCEEEEEHHHH-----------HHHHHHHHHH------HHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf ---7996799789998-----------7544999862------4227989893645546885999999999999998399
Q ss_pred CEEEEECCCC----CCCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 1676504433----5730252036---9886479998999999997----27888967899999975989789998814
Q gi|254780217|r 162 LFILISHASP----TILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 162 ~fiLit~~~~----~il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
T Consensus 132 ~llits~~~P~~l~~~l~DL~SRl~~~~~~~i~~l~d~~~~~iL~~~a~~rgi~l~~~v~~yl~~r~~R~~~~L~~~l~ 210 (234)
T PRK05642 132 RLLLAASKSPRELPVKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred EEEEECCCCHHHHCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 5999578795552300167999995781275148998999999999977546899989999999973588999999999