HHsearch alignment for GI: 254780217 and conserved domain: PRK05642

>PRK05642 DNA replication initiation factor; Validated.
Probab=98.42  E-value=1.6e-05  Score=64.03  Aligned_cols=177  Identities=16%  Similarity=0.210  Sum_probs=109.3

Q ss_pred             CCHHHHC-C-HHHHHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf             7565610-9-299999999999828--89816631179898889999999999817799886431210126788679999
Q gi|254780217|r    9 VYNQRLF-G-HEDIEKFLSQYYCSG--RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQM   84 (347)
Q Consensus         9 ~~~~~i~-G-~~~~~~~L~~~~~~~--~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i   84 (347)
T Consensus        16 ~tfdnFi~g~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~------------------------   71 (234)
T PRK05642         16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQ------------------------   71 (234)
T ss_pred             CCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH------------------------
T ss_conf             77303571875999999999876067877883899889999889999999999980------------------------


Q ss_pred             HCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHCC-CCC
Q ss_conf             678987545300100010134212323788755443102221111210353220554240--00145677766303-434
Q gi|254780217|r   85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEPP-QKV  161 (347)
Q Consensus        85 ~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEPp-~~t  161 (347)
T Consensus        72 ---~~~~~~yl~~~~~-----------~~~~~~~~~~------l~~~d~l~IDDi~~i~g~~~~e~~lF~l~N~~~~~~~  131 (234)
T PRK05642         72 ---RGEPAVYLPLAEL-----------LDRGPELLDN------LEQYELVCIDDLDVIAGKADWEEALFHLFNRLRDSGR  131 (234)
T ss_pred             ---CCCCEEEEEHHHH-----------HHHHHHHHHH------HHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             ---7996799789998-----------7544999862------4227989893645546885999999999999998399


Q ss_pred             CEEEEECCCC----CCCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf             1676504433----5730252036---9886479998999999997----27888967899999975989789998814
Q gi|254780217|r  162 LFILISHASP----TILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH  229 (347)
Q Consensus       162 ~fiLit~~~~----~il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~  229 (347)
T Consensus       132 ~llits~~~P~~l~~~l~DL~SRl~~~~~~~i~~l~d~~~~~iL~~~a~~rgi~l~~~v~~yl~~r~~R~~~~L~~~l~  210 (234)
T PRK05642        132 RLLLAASKSPRELPVKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLE  210 (234)
T ss_pred             EEEEECCCCHHHHCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             5999578795552300167999995781275148998999999999977546899989999999973588999999999