HHsearch alignment for GI: 254780217 and conserved domain: PRK05648
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed.
Probab=100.00 E-value=0 Score=437.14 Aligned_cols=215 Identities=25% Similarity=0.396 Sum_probs=205.4
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
T Consensus 5 ~lark~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~------ 78 (705)
T PRK05648 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSV------ 78 (705)
T ss_pred HHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 66553178757663281999999999997098630465007898889899999999867789998897877600------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
T Consensus 79 c~~i~~~~~~d~~e~d~as~---------~~v~~~r~~~~~~~~~p~~~~~kv~~idevhmls~~~fnallktleepp~~ 149 (705)
T PRK05648 79 CREIDEGRFVDLIEVDAASR---------TKVEDTRELLDNVQYAPTRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPH 149 (705)
T ss_pred HHHHHCCCCCCEEEECCCCC---------CCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHCCCCCCC
T ss_conf 46662489776344515544---------788999999985551776774579998426541799999998740479754
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 41676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
T Consensus 150 v~f~~att~~~k~p~t~~src~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~g~~rd~ls~~dq 223 (705)
T PRK05648 150 VKFLLATTDPQKLPVTILSRCLQFSLKNMSPERVVEHLSHVLGAENVPFEEDALWLLGRAADGSMRDAMSLTDQ 223 (705)
T ss_pred EEEEEECCCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 59998428735375899976643023689999999999999997599778999999999748967779999999