HHsearch alignment for GI: 254780217 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=95.22 E-value=0.01 Score=41.55 Aligned_cols=146 Identities=17% Similarity=0.144 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHCC---------CCCEEEEECCCCCCCHHHHHHHHHH-HHHCCCCCCCCCHHHCCCCCCCHH-HHHHHC
Q ss_conf 99999999999828---------8981663117989888999999999-981779988643121012678867-999967
Q gi|254780217|r 18 EDIEKFLSQYYCSG---------RMHHALLFEGEQGIGKATLGFRYAG-HVLQNPDFSKAPVRMCNPDPCSPF-VKQMAS 86 (347)
Q Consensus 18 ~~~~~~L~~~~~~~---------~l~ha~Lf~Gp~GiGK~~~A~~~A~-~llc~~~~~~~~~~~~~~~~~~~~-~~~i~~ 86 (347)
T Consensus 185 ~~~~~~l~~~L~~~l~~~~~~~~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~---kV~lIT~DtyRigA~eQLk~ 261 (412)
T PRK05703 185 REAWRYLLELLANMLPTRVEDILEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKD---KVALITLDTYRIGAVEQLKT 261 (412)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC---EEEEEEECCCCHHHHHHHHH
T ss_conf 999999999999757888766545673699988888756769999999999972998---17999837677779999999
Q ss_pred ---CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-HHHHHHHH-HHH-HCCCC
Q ss_conf ---8987545300100010134212323788755443102221111210353220554240-00145677-766-30343
Q gi|254780217|r 87 ---HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-NAANALLK-SLE-EPPQK 160 (347)
Q Consensus 87 ---~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-~AaNALLK-~LE-EPp~~ 160 (347)
T Consensus 262 Ya~ilgvp~~v~~--------------~~~~l~~al~~------~~~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~~~~ 321 (412)
T PRK05703 262 YAKIMGIPVKVAY--------------DPKELAKALEQ------LANCDLILIDTAGRSQRDPRLISELKALIENSKPID 321 (412)
T ss_pred HHHHCCCEEEEEC--------------CHHHHHHHHHH------HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9997197379847--------------99999999987------158997999689889789999999999986248871
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 41676504433573025203698864
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
T Consensus 322 ~~LVlsat~~~~dl~~i~~~f~~~~~ 347 (412)
T PRK05703 322 VYLVLSATTKYRDLKDIVKHFSRLPL 347 (412)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 89997598998999999998467999